organic compounds
N-(4-Chlorophenyl)-3-nitropyridin-2-amine
aDepartment of Chemistry, University of Malaya, 50603 Kuala Lumpur, Malaysia, and bChemistry Department, Faculty of Science, King Abdulaziz University, PO Box 80203 Jeddah, Saudi Arabia
*Correspondence e-mail: edward.tiekink@gmail.com
In the title compound, C11H8ClN3O2, the presence of intramolecular N—H⋯O and C—H⋯N interactions help to establish an almost planar molecule [dihedral angle between the pyridine and benzene rings = 9.89 (8)° and r.m.s. deviation for all 17 non-H atoms = 0.120 Å]. Supramolecular tapes feature in the crystal packing whereby dimeric aggregates sustained by pairs of C—H⋯O interactions are connected by π–π interactions occurring between translationally related pyridine rings and between translationally related benzene rings along the b axis [centroid–centroid distance = length of b axis = 3.8032 (4) Å].
Related literature
For the structure of a related pyrimidine amine derivative, see: Aznan Akhmad et al. (2010).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2009); cell SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997) and DIAMOND (Brandenburg, 2006); software used to prepare material for publication: publCIF (Westrip, 2010).
Supporting information
https://doi.org/10.1107/S1600536811045570/hb6473sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536811045570/hb6473Isup2.hkl
Supporting information file. DOI: https://doi.org/10.1107/S1600536811045570/hb6473Isup3.cml
2-Chloro-3-nitro-pyridine (0.906 g, 0.0057 mol) and p-chloroaniline (0.730 g, 0.0057 mol) were refluxed in ethanol (5 ml) for 4 h at 385 K. After cooling the mixture, the residue was dissolved in a minimum volume of water (10 ml) and extracted with ether (3 x 10 ml). The ethereal layer was washed with water and dried over anhydrous sodium sulfate. Evaporation gave a red solid and recrystallization from its diethyl ether solution yielded red-brown prisms of (I) after a few days.
Carbon-bound hydrogen atoms were placed at calculated positions (C—H 0.95 Å) and were treated as riding on their parent carbon atoms, with U(H) set to 1.2 times Ueq(C). The amine-H atom was refined with N—H = 0.86±0.01 Å with refined Uiso.
In connection with synthetic and structural studies of nitro-pyridine/pyrimidine derivatives (Aznan Akhmad et al., 2010), the title compound, (I), was investigated. A small twist is evident in (I), Fig. 1, as seen in the value of the dihedral angle between the pyridyl and benzene rings of 9.89 (8) Å. The nitro group is co-planar with the pyridyl ring to which it is connected: the O1—N3—C2—C1 torsion angle is 5.0 (2)°. The observed conformation is stabilized by an intramolecular N—H···O hydrogen bond as well as a C—H···N interaction, Table 1. Overall, the molecule is close to planar with the r.m.s. deviation for all 17 non-hydrogen atoms being 0.120 Å.
In the π–π interactions between translationally related pyridyl rings and between translationally related benzene rings with the centroid···centroid separation corresponding to the length of the b axis, i.e. 3.8032 (4) Å, Fig. 2. The columns are connected by weak C—H···Cl [closest contact: C5—H5···Cl1i = 3.97 Å, C5···Cl1i = 3.6112 (19) Å and angle at H5 = 124° for i: 1/2 - x, 3/2 - y, 1 - z] and Cl···Cl [Cl1···Cl1ii = 3.4366 (7) Å for ii: 1/2 - x, -1/2 + y, 1/2 - z] contacts. A view of the unit-cell contents is given in Fig. 3.
centrosymmetrically related molecules are connected into dimeric aggregates via C—H···O interactions, Table 1. These are connected into a supramolecular tape along the b axis byFor the structure of a related pyrimidine amine derivative, see: Aznan Akhmad et al. (2010).
Data collection: APEX2 (Bruker, 2009); cell
SAINT (Bruker, 2009); data reduction: SAINT (Bruker, 2009); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997) and DIAMOND (Brandenburg, 2006); software used to prepare material for publication: publCIF (Westrip, 2010).C11H8ClN3O2 | F(000) = 1024 |
Mr = 249.65 | Dx = 1.605 Mg m−3 |
Monoclinic, C2/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -C 2yc | Cell parameters from 2586 reflections |
a = 30.472 (3) Å | θ = 2.3–28.0° |
b = 3.8032 (4) Å | µ = 0.36 mm−1 |
c = 21.300 (2) Å | T = 100 K |
β = 123.153 (1)° | Prism, red-brown |
V = 2066.7 (4) Å3 | 0.40 × 0.15 × 0.05 mm |
Z = 8 |
Bruker SMART APEX CCD diffractometer | 2347 independent reflections |
Radiation source: fine-focus sealed tube | 1912 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.042 |
ω scans | θmax = 27.5°, θmin = 1.6° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −36→38 |
Tmin = 0.869, Tmax = 0.982 | k = −4→4 |
8919 measured reflections | l = −27→27 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.034 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.091 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.00 | w = 1/[σ2(Fo2) + (0.0483P)2 + 1.1995P] where P = (Fo2 + 2Fc2)/3 |
2347 reflections | (Δ/σ)max = 0.001 |
158 parameters | Δρmax = 0.33 e Å−3 |
0 restraints | Δρmin = −0.22 e Å−3 |
C11H8ClN3O2 | V = 2066.7 (4) Å3 |
Mr = 249.65 | Z = 8 |
Monoclinic, C2/c | Mo Kα radiation |
a = 30.472 (3) Å | µ = 0.36 mm−1 |
b = 3.8032 (4) Å | T = 100 K |
c = 21.300 (2) Å | 0.40 × 0.15 × 0.05 mm |
β = 123.153 (1)° |
Bruker SMART APEX CCD diffractometer | 2347 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | 1912 reflections with I > 2σ(I) |
Tmin = 0.869, Tmax = 0.982 | Rint = 0.042 |
8919 measured reflections |
R[F2 > 2σ(F2)] = 0.034 | 0 restraints |
wR(F2) = 0.091 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.00 | Δρmax = 0.33 e Å−3 |
2347 reflections | Δρmin = −0.22 e Å−3 |
158 parameters |
Refinement. Refinement of F^2^ against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F^2^, conventional R-factors R are based on F, with F set to zero for negative F^2^. The threshold expression of F^2^ > 2σ(F^2^) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F^2^ are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Cl1 | 0.223442 (15) | 0.15167 (11) | 0.28841 (2) | 0.01760 (13) | |
O1 | 0.00287 (5) | 1.1095 (3) | 0.32850 (6) | 0.0239 (3) | |
O2 | −0.01657 (5) | 1.3711 (4) | 0.40019 (7) | 0.0271 (3) | |
N1 | 0.09477 (5) | 0.8069 (4) | 0.38672 (8) | 0.0151 (3) | |
H1n | 0.0640 (8) | 0.866 (5) | 0.3481 (11) | 0.021 (5)* | |
N2 | 0.14771 (5) | 0.8205 (4) | 0.51652 (7) | 0.0155 (3) | |
N3 | 0.01356 (5) | 1.1930 (4) | 0.39171 (8) | 0.0180 (3) | |
C1 | 0.10203 (6) | 0.9037 (4) | 0.45291 (9) | 0.0141 (3) | |
C2 | 0.06265 (6) | 1.0832 (4) | 0.45711 (9) | 0.0148 (3) | |
C3 | 0.07133 (7) | 1.1672 (4) | 0.52649 (9) | 0.0175 (3) | |
H3 | 0.0452 | 1.2859 | 0.5296 | 0.021* | |
C4 | 0.11814 (7) | 1.0768 (4) | 0.59046 (9) | 0.0181 (4) | |
H4 | 0.1252 | 1.1299 | 0.6388 | 0.022* | |
C5 | 0.15475 (6) | 0.9047 (4) | 0.58188 (9) | 0.0172 (3) | |
H5 | 0.1872 | 0.8427 | 0.6261 | 0.021* | |
C6 | 0.12870 (6) | 0.6443 (4) | 0.36965 (9) | 0.0137 (3) | |
C7 | 0.18163 (6) | 0.5712 (4) | 0.42051 (9) | 0.0161 (3) | |
H7 | 0.1978 | 0.6249 | 0.4722 | 0.019* | |
C8 | 0.21055 (6) | 0.4195 (4) | 0.39510 (9) | 0.0163 (3) | |
H8 | 0.2467 | 0.3708 | 0.4294 | 0.020* | |
C9 | 0.18699 (6) | 0.3393 (4) | 0.32026 (9) | 0.0149 (3) | |
C10 | 0.13421 (6) | 0.4065 (4) | 0.26931 (9) | 0.0161 (3) | |
H10 | 0.1181 | 0.3478 | 0.2179 | 0.019* | |
C11 | 0.10550 (6) | 0.5593 (4) | 0.29426 (9) | 0.0158 (3) | |
H11 | 0.0694 | 0.6076 | 0.2596 | 0.019* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cl1 | 0.0176 (2) | 0.0184 (2) | 0.0213 (2) | 0.00078 (16) | 0.01348 (17) | −0.00104 (16) |
O1 | 0.0167 (6) | 0.0340 (8) | 0.0164 (6) | 0.0051 (5) | 0.0062 (5) | −0.0024 (5) |
O2 | 0.0182 (6) | 0.0350 (8) | 0.0279 (7) | 0.0118 (6) | 0.0125 (5) | −0.0006 (6) |
N1 | 0.0103 (7) | 0.0182 (7) | 0.0148 (6) | 0.0020 (6) | 0.0056 (6) | −0.0004 (6) |
N2 | 0.0130 (7) | 0.0168 (7) | 0.0157 (6) | 0.0005 (6) | 0.0071 (6) | 0.0011 (5) |
N3 | 0.0148 (7) | 0.0186 (7) | 0.0213 (7) | 0.0018 (6) | 0.0103 (6) | −0.0002 (6) |
C1 | 0.0148 (8) | 0.0107 (8) | 0.0176 (7) | −0.0025 (6) | 0.0094 (6) | −0.0004 (6) |
C2 | 0.0115 (8) | 0.0141 (8) | 0.0184 (8) | −0.0007 (6) | 0.0079 (6) | −0.0003 (6) |
C3 | 0.0197 (8) | 0.0143 (8) | 0.0234 (8) | 0.0004 (7) | 0.0148 (7) | 0.0006 (6) |
C4 | 0.0225 (9) | 0.0167 (8) | 0.0178 (8) | −0.0018 (7) | 0.0128 (7) | −0.0008 (6) |
C5 | 0.0157 (8) | 0.0178 (9) | 0.0161 (7) | −0.0009 (7) | 0.0073 (6) | 0.0013 (6) |
C6 | 0.0145 (8) | 0.0104 (8) | 0.0178 (7) | −0.0013 (6) | 0.0098 (6) | 0.0000 (6) |
C7 | 0.0157 (8) | 0.0170 (8) | 0.0152 (7) | −0.0004 (7) | 0.0082 (7) | −0.0016 (6) |
C8 | 0.0115 (8) | 0.0174 (8) | 0.0183 (8) | 0.0000 (6) | 0.0070 (6) | −0.0001 (6) |
C9 | 0.0168 (8) | 0.0114 (8) | 0.0206 (8) | 0.0000 (6) | 0.0129 (7) | 0.0004 (6) |
C10 | 0.0163 (8) | 0.0158 (8) | 0.0149 (7) | −0.0015 (6) | 0.0078 (6) | −0.0006 (6) |
C11 | 0.0129 (8) | 0.0148 (8) | 0.0169 (7) | −0.0004 (6) | 0.0065 (6) | 0.0003 (6) |
Cl1—C9 | 1.7400 (16) | C4—C5 | 1.389 (2) |
O1—N3 | 1.2408 (18) | C4—H4 | 0.9500 |
O2—N3 | 1.2312 (18) | C5—H5 | 0.9500 |
N1—C1 | 1.353 (2) | C6—C11 | 1.393 (2) |
N1—C6 | 1.412 (2) | C6—C7 | 1.393 (2) |
N1—H1n | 0.87 (2) | C7—C8 | 1.387 (2) |
N2—C5 | 1.327 (2) | C7—H7 | 0.9500 |
N2—C1 | 1.346 (2) | C8—C9 | 1.378 (2) |
N3—C2 | 1.440 (2) | C8—H8 | 0.9500 |
C1—C2 | 1.426 (2) | C9—C10 | 1.386 (2) |
C2—C3 | 1.389 (2) | C10—C11 | 1.376 (2) |
C3—C4 | 1.372 (2) | C10—H10 | 0.9500 |
C3—H3 | 0.9500 | C11—H11 | 0.9500 |
C1—N1—C6 | 131.43 (14) | N2—C5—H5 | 117.6 |
C1—N1—H1n | 113.1 (12) | C4—C5—H5 | 117.6 |
C6—N1—H1n | 115.4 (12) | C11—C6—C7 | 119.45 (15) |
C5—N2—C1 | 118.99 (14) | C11—C6—N1 | 114.64 (14) |
O2—N3—O1 | 121.71 (14) | C7—C6—N1 | 125.90 (14) |
O2—N3—C2 | 118.75 (13) | C8—C7—C6 | 119.47 (14) |
O1—N3—C2 | 119.54 (13) | C8—C7—H7 | 120.3 |
N2—C1—N1 | 118.36 (14) | C6—C7—H7 | 120.3 |
N2—C1—C2 | 119.48 (14) | C9—C8—C7 | 120.22 (15) |
N1—C1—C2 | 122.15 (14) | C9—C8—H8 | 119.9 |
C3—C2—C1 | 120.01 (15) | C7—C8—H8 | 119.9 |
C3—C2—N3 | 117.09 (14) | C8—C9—C10 | 120.84 (15) |
C1—C2—N3 | 122.88 (14) | C8—C9—Cl1 | 120.15 (13) |
C4—C3—C2 | 119.25 (15) | C10—C9—Cl1 | 119.02 (12) |
C4—C3—H3 | 120.4 | C11—C10—C9 | 119.08 (15) |
C2—C3—H3 | 120.4 | C11—C10—H10 | 120.5 |
C3—C4—C5 | 117.45 (15) | C9—C10—H10 | 120.5 |
C3—C4—H4 | 121.3 | C10—C11—C6 | 120.93 (15) |
C5—C4—H4 | 121.3 | C10—C11—H11 | 119.5 |
N2—C5—C4 | 124.83 (15) | C6—C11—H11 | 119.5 |
C5—N2—C1—N1 | −178.05 (15) | C1—N2—C5—C4 | −0.2 (3) |
C5—N2—C1—C2 | 0.7 (2) | C3—C4—C5—N2 | −0.2 (3) |
C6—N1—C1—N2 | −4.5 (3) | C1—N1—C6—C11 | 175.03 (16) |
C6—N1—C1—C2 | 176.74 (16) | C1—N1—C6—C7 | −6.0 (3) |
N2—C1—C2—C3 | −0.7 (2) | C11—C6—C7—C8 | 0.9 (2) |
N1—C1—C2—C3 | 177.97 (16) | N1—C6—C7—C8 | −178.01 (15) |
N2—C1—C2—N3 | 177.63 (14) | C6—C7—C8—C9 | −0.5 (3) |
N1—C1—C2—N3 | −3.7 (3) | C7—C8—C9—C10 | −0.3 (3) |
O2—N3—C2—C3 | 4.2 (2) | C7—C8—C9—Cl1 | 179.57 (13) |
O1—N3—C2—C3 | −176.53 (15) | C8—C9—C10—C11 | 0.8 (2) |
O2—N3—C2—C1 | −174.27 (15) | Cl1—C9—C10—C11 | −179.10 (13) |
O1—N3—C2—C1 | 5.0 (2) | C9—C10—C11—C6 | −0.4 (3) |
C1—C2—C3—C4 | 0.3 (3) | C7—C6—C11—C10 | −0.4 (2) |
N3—C2—C3—C4 | −178.19 (15) | N1—C6—C11—C10 | 178.60 (15) |
C2—C3—C4—C5 | 0.2 (3) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1n···O1 | 0.87 (2) | 1.91 (2) | 2.6280 (18) | 138.2 (17) |
C7—H7···N2 | 0.95 | 2.31 | 2.909 (2) | 120 |
C3—H3···O2i | 0.95 | 2.48 | 3.340 (3) | 152 |
Symmetry code: (i) −x, −y+3, −z+1. |
Experimental details
Crystal data | |
Chemical formula | C11H8ClN3O2 |
Mr | 249.65 |
Crystal system, space group | Monoclinic, C2/c |
Temperature (K) | 100 |
a, b, c (Å) | 30.472 (3), 3.8032 (4), 21.300 (2) |
β (°) | 123.153 (1) |
V (Å3) | 2066.7 (4) |
Z | 8 |
Radiation type | Mo Kα |
µ (mm−1) | 0.36 |
Crystal size (mm) | 0.40 × 0.15 × 0.05 |
Data collection | |
Diffractometer | Bruker SMART APEX CCD |
Absorption correction | Multi-scan (SADABS; Sheldrick, 1996) |
Tmin, Tmax | 0.869, 0.982 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 8919, 2347, 1912 |
Rint | 0.042 |
(sin θ/λ)max (Å−1) | 0.650 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.034, 0.091, 1.00 |
No. of reflections | 2347 |
No. of parameters | 158 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.33, −0.22 |
Computer programs: APEX2 (Bruker, 2009), SAINT (Bruker, 2009), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 (Farrugia, 1997) and DIAMOND (Brandenburg, 2006), publCIF (Westrip, 2010).
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1n···O1 | 0.87 (2) | 1.91 (2) | 2.6280 (18) | 138.2 (17) |
C7—H7···N2 | 0.95 | 2.31 | 2.909 (2) | 120 |
C3—H3···O2i | 0.95 | 2.48 | 3.340 (3) | 152 |
Symmetry code: (i) −x, −y+3, −z+1. |
Footnotes
‡Additional correspondence author, e-mail: zana@um.edu.my.
Acknowledgements
We thank the University of Malaya (grant No. RG027/ 09AFR) for supporting this study.
References
Aznan Akhmad, M. A., Abdullah, Z., Fairuz, Z. A., Ng, S. W. & Tiekink, E. R. T. (2010). Acta Cryst. E66, o2400. Web of Science CSD CrossRef IUCr Journals Google Scholar
Brandenburg, K. (2006). DIAMOND. Crystal Impact GbR, Bonn, Germany. Google Scholar
Bruker (2009). APEX2 and SAINT. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Farrugia, L. J. (1997). J. Appl. Cryst. 30, 565. CrossRef IUCr Journals Google Scholar
Sheldrick, G. M. (1996). SADABS. University of Göttingen, Germany. Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Westrip, S. P. (2010). J. Appl. Cryst. 43, 920–925. Web of Science CrossRef CAS IUCr Journals Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
In connection with synthetic and structural studies of nitro-pyridine/pyrimidine derivatives (Aznan Akhmad et al., 2010), the title compound, (I), was investigated. A small twist is evident in (I), Fig. 1, as seen in the value of the dihedral angle between the pyridyl and benzene rings of 9.89 (8) Å. The nitro group is co-planar with the pyridyl ring to which it is connected: the O1—N3—C2—C1 torsion angle is 5.0 (2)°. The observed conformation is stabilized by an intramolecular N—H···O hydrogen bond as well as a C—H···N interaction, Table 1. Overall, the molecule is close to planar with the r.m.s. deviation for all 17 non-hydrogen atoms being 0.120 Å.
In the crystal structure, centrosymmetrically related molecules are connected into dimeric aggregates via C—H···O interactions, Table 1. These are connected into a supramolecular tape along the b axis by π–π interactions between translationally related pyridyl rings and between translationally related benzene rings with the centroid···centroid separation corresponding to the length of the b axis, i.e. 3.8032 (4) Å, Fig. 2. The columns are connected by weak C—H···Cl [closest contact: C5—H5···Cl1i = 3.97 Å, C5···Cl1i = 3.6112 (19) Å and angle at H5 = 124° for i: 1/2 - x, 3/2 - y, 1 - z] and Cl···Cl [Cl1···Cl1ii = 3.4366 (7) Å for ii: 1/2 - x, -1/2 + y, 1/2 - z] contacts. A view of the unit-cell contents is given in Fig. 3.