organic compounds
5-Chloro-1-nonyl-1H-benzimidazol-2(3H)-one
aLaboratoire de Chimie Organique Appliquée, Université Sidi Mohamed Ben Abdallah, Faculté des Sciences et Techniques, Route d'immouzzer, BP 2202, Fès, Morocco, bLaboratoire de Chimie Organique Hétérocyclique URAC21, Faculté des Sciences, Université Mohammed V-Agdal, Av. Ibn Battouta, BP 1014, Rabat, Morocco, cDepartamento de Quimica Inorganica & Organica, ESTCE, Universitat Jaume I, E-12080 Castellon, Spain, dInstitut für Anorganische Chemie, J.W. Goethe-Universität Frankfurt, Max-von-Laue-Strasse 7, 60438 Frankfurt/Main, Germany, and eLaboratoire de Chimie du Solide Appliquée, Faculté des Sciences, Université Mohammed V-Agdal, Avenue Ibn Battouta, BP 1014, Rabat, Morocco
*Correspondence e-mail: ouazzani_chahid@yahoo.fr
The 16H23ClN2O, comtains two independent molecules in which the fused-ring systems are essentially planar, the largest deviation from the mean plane of each molecule being 0.011 (2) Å and 0.016 (2) Å. The benzimidazole rings of the two molecules make a dihedral angle of 66.65 (7)°. The nonyl substituents are almost perpendicular to the benzimidazole planes [C—N—C—C tosrsion angles = 96.0 (3) and 81.0 (2)°]. In the crystal, each independent molecule forms an inversion dimer via a pair of N—H⋯O hydrogen bonds. In one of the independent molecules, the terminal –CH2–CH3 group of the alkyl chain is disordered over two sets of sites with a refined occupancy ratio of 0.746 (7):0.254 (7).
of the title compound, CRelated literature
For the pharmacological, biochemical and structural properties of benzimidazolones, see: Al Muhaimeed (1997); Nakano et al. (2000); Scott et al. (2002); Zarrinmayeh et al. (1998); Zhu et al. (2000); Ouzidan et al. (2011a,b).
Experimental
Crystal data
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Refinement
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Data collection: CrysAlis PRO (Agilent, 2011); cell CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: XP (Sheldrick, 2008); software used to prepare material for publication: SHELXL97.
Supporting information
https://doi.org/10.1107/S1600536811047829/im2336sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536811047829/im2336Isup2.hkl
Supporting information file. DOI: https://doi.org/10.1107/S1600536811047829/im2336Isup3.cml
To 5-chloro-1,3-dihydrobenzimidazol-2-one (0.2 g, 1.18 mmol), potassium carbonate (0.33 g, 2.38 mmol), and tetra-n-butylammonium bromide (0.04 g, 0.11 mmol) in DMF (15 ml) was added nonyl bromide (0.34 ml, 1.78 mmol). Stirring was continued at room temperature for 6 h. The salts were removed by filtration and the filtrate concentrated under reduced pressure. The residue was separated by
on a column of silica gel with ethyl acetate/hexane (1/2) as (Yield: 34%). Single crystals were isolated when the solvent was allowed to evaporate at room temperature.The nonyl group of the first molecule shows a disordered –CH2—CH3 terminus as shown in the high values of the atomic displacement parameters. This group is refined with C18–C19 distance restraints to 1.510 Å. H atoms were located in a difference map and treated as riding with N—H = 0.86 Å, C—H = 0.93 Å (aromatic), C—H = 0.97 Å (methylene) and C—H = 0.96 Å (methyl) with Uiso(H) = 1.2 Ueq(aromatic, methylene) and Uiso(H) = 1.5 Ueq(methyl). The nitrogen bonded H atom was refined without fixed thermal parameters.
Benzimidazoles and their derivatives exhibit a number of important pharmacological properties, such as antihistaminic (Al Muhaimeed, 1997) anti-ulcerative (Scott et al., 2002) and antiallergic (Nakano et al., 2000). In addition, benzimidazole derivatives are effective against the human cytomegalovirus (HCMV) (Zhu et al., 2000) and are also efficient selective neuropeptide Y Y1 receptor antagonists (Zarrinmayeh et al., 1998).
As a continuation of our research work devoted to the development of substituted benzimidazol-2-one derivatives (Ouzidan et al., 2011a, 2011b), we report the synthesis of a new benzimidazol-2-one derivative by action of nonyl bromide with 5-chloro-1,3-dihydrobenzimidazol-2-one. The reaction provided the title compound (Scheme 1).
The
of the title compound, C16H23ClN2O is built up from two independent molecules with different orientations as shown in Fig.1. The two fused five and six-membered rings building each molecule are almost planar with the maximum deviation of 0.011 (2) Å and 0.016 (2) Å for N2 in the first molecule (C1 to C19) and for C1A in the second molecule (C1A to C19A), respectively. The dihedral angle between the two benzimidazole rings is 66.65 (7)°. The nonyl groups are almost perpendicular to the benzimidazole planes as indicated by the torsion angles of C1—N1—C11—C12 = 96.0 (3) ° and C1A—N1A—C11A—C12A = 81.0 (2) °.In the
each molecule forms a hydrogen bonded centrosymmetrical dimer as shown in Fig.2.For the pharmacological, biochemical and structural properties of benzimidazolones, see: Al Muhaimeed (1997); Nakano et al. (2000); Scott et al. (2002); Zarrinmayeh et al. (1998); Zhu et al. (2000); Ouzidan et al. (2011a,b).
Data collection: CrysAlis PRO (Agilent, 2011); cell
CrysAlis PRO (Agilent, 2011); data reduction: CrysAlis PRO (Agilent, 2011); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: XP (Sheldrick, 2008); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).C16H23ClN2O | Z = 4 |
Mr = 294.81 | F(000) = 632 |
Triclinic, P1 | Dx = 1.207 Mg m−3 |
Hall symbol: -P 1 | Cu Kα radiation, λ = 1.54184 Å |
a = 5.51441 (17) Å | Cell parameters from 5000 reflections |
b = 15.6507 (4) Å | θ = 5–50° |
c = 20.0540 (6) Å | µ = 2.06 mm−1 |
α = 71.807 (3)° | T = 296 K |
β = 86.612 (2)° | Block, yellow |
γ = 80.709 (2)° | 0.43 × 0.20 × 0.16 mm |
V = 1622.59 (8) Å3 |
Agilent SuperNova Dual (Cu at zero) Atlas diffractometer | 6416 independent reflections |
Radiation source: SuperNova (Cu) X-ray Source | 5705 reflections with I > 2σ(I) |
Mirror monochromator | Rint = 0.031 |
Detector resolution: 10.4051 pixels mm-1 | θmax = 73.5°, θmin = 3.0° |
ω scans | h = −6→6 |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | k = −19→19 |
Tmin = 0.640, Tmax = 0.720 | l = −24→24 |
31859 measured reflections |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.044 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.124 | w = 1/[σ2(Fo2) + (0.0609P)2 + 0.658P] where P = (Fo2 + 2Fc2)/3 |
S = 1.03 | (Δ/σ)max < 0.001 |
6416 reflections | Δρmax = 0.46 e Å−3 |
379 parameters | Δρmin = −0.32 e Å−3 |
9 restraints | Extinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0031 (3) |
C16H23ClN2O | γ = 80.709 (2)° |
Mr = 294.81 | V = 1622.59 (8) Å3 |
Triclinic, P1 | Z = 4 |
a = 5.51441 (17) Å | Cu Kα radiation |
b = 15.6507 (4) Å | µ = 2.06 mm−1 |
c = 20.0540 (6) Å | T = 296 K |
α = 71.807 (3)° | 0.43 × 0.20 × 0.16 mm |
β = 86.612 (2)° |
Agilent SuperNova Dual (Cu at zero) Atlas diffractometer | 6416 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | 5705 reflections with I > 2σ(I) |
Tmin = 0.640, Tmax = 0.720 | Rint = 0.031 |
31859 measured reflections |
R[F2 > 2σ(F2)] = 0.044 | 9 restraints |
wR(F2) = 0.124 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.03 | Δρmax = 0.46 e Å−3 |
6416 reflections | Δρmin = −0.32 e Å−3 |
379 parameters |
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
Refinement. Refinement of F2 against all reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on all data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
Cl1 | 0.25688 (10) | 1.14681 (4) | 0.21378 (3) | 0.05904 (16) | |
O1 | 0.9124 (2) | 0.88615 (9) | 0.54464 (7) | 0.0510 (3) | |
N1 | 0.6002 (3) | 0.87446 (10) | 0.47672 (8) | 0.0432 (3) | |
N2 | 0.7802 (3) | 0.99710 (11) | 0.44015 (8) | 0.0434 (3) | |
H2 | 0.873 (4) | 1.0339 (15) | 0.4395 (11) | 0.049 (6)* | |
C1 | 0.4881 (3) | 0.92923 (12) | 0.41404 (9) | 0.0409 (4) | |
C2 | 0.6050 (3) | 1.00686 (12) | 0.39072 (9) | 0.0400 (4) | |
C3 | 0.5395 (3) | 1.07491 (12) | 0.32944 (9) | 0.0434 (4) | |
H3 | 0.6185 | 1.1259 | 0.3135 | 0.052* | |
C4 | 0.3486 (3) | 1.06323 (13) | 0.29259 (9) | 0.0441 (4) | |
C5 | 0.2297 (3) | 0.98786 (14) | 0.31460 (10) | 0.0469 (4) | |
H5 | 0.1026 | 0.9832 | 0.2881 | 0.056* | |
C6 | 0.2996 (3) | 0.91879 (13) | 0.37635 (10) | 0.0463 (4) | |
H6 | 0.2220 | 0.8674 | 0.3917 | 0.056* | |
C7 | 0.7793 (3) | 0.91679 (13) | 0.49246 (9) | 0.0430 (4) | |
C11 | 0.5279 (4) | 0.79200 (14) | 0.52610 (10) | 0.0521 (5) | |
H11A | 0.3529 | 0.7936 | 0.5218 | 0.063* | |
H11B | 0.5576 | 0.7914 | 0.5734 | 0.063* | |
C12 | 0.6626 (4) | 0.70491 (14) | 0.51532 (11) | 0.0555 (5) | |
H12A | 0.8369 | 0.7087 | 0.5110 | 0.067* | |
H12B | 0.6391 | 0.6548 | 0.5570 | 0.067* | |
C13 | 0.5848 (4) | 0.68309 (13) | 0.45206 (11) | 0.0526 (5) | |
H13A | 0.6122 | 0.7321 | 0.4100 | 0.063* | |
H13B | 0.4102 | 0.6797 | 0.4557 | 0.063* | |
C14 | 0.7238 (4) | 0.59384 (14) | 0.44517 (12) | 0.0573 (5) | |
H14A | 0.8975 | 0.5986 | 0.4395 | 0.069* | |
H14B | 0.7032 | 0.5457 | 0.4884 | 0.069* | |
C15 | 0.6427 (4) | 0.56742 (13) | 0.38457 (12) | 0.0578 (5) | |
H15A | 0.6546 | 0.6168 | 0.3415 | 0.069* | |
H15B | 0.4716 | 0.5589 | 0.3916 | 0.069* | |
C16 | 0.7941 (5) | 0.48115 (16) | 0.37656 (15) | 0.0746 (7) | |
H16A | 0.9640 | 0.4908 | 0.3680 | 0.090* | |
H16B | 0.7876 | 0.4326 | 0.4205 | 0.090* | |
C17 | 0.7129 (7) | 0.4510 (2) | 0.31899 (18) | 0.0965 (10) | |
H17A | 0.7396 | 0.4950 | 0.2739 | 0.116* | 0.746 (7) |
H17B | 0.5388 | 0.4469 | 0.3241 | 0.116* | 0.746 (7) |
H17C | 0.6367 | 0.5062 | 0.2847 | 0.116* | 0.254 (7) |
H17D | 0.5809 | 0.4166 | 0.3392 | 0.116* | 0.254 (7) |
C18 | 0.8622 (12) | 0.3558 (3) | 0.3220 (2) | 0.118 (2) | 0.746 (7) |
H18A | 1.0352 | 0.3620 | 0.3170 | 0.141* | 0.746 (7) |
H18B | 0.8392 | 0.3142 | 0.3684 | 0.141* | 0.746 (7) |
C19 | 0.8116 (13) | 0.3189 (4) | 0.2768 (4) | 0.167 (3) | 0.746 (7) |
H19A | 0.9265 | 0.2645 | 0.2810 | 0.250* | 0.746 (7) |
H19B | 0.8222 | 0.3606 | 0.2304 | 0.250* | 0.746 (7) |
H19C | 0.6481 | 0.3040 | 0.2853 | 0.250* | 0.746 (7) |
C18' | 0.869 (2) | 0.3959 (10) | 0.2756 (8) | 0.095 (4)* | 0.254 (7) |
H18C | 0.7580 | 0.3612 | 0.2632 | 0.115* | 0.254 (7) |
H18D | 0.9086 | 0.4405 | 0.2321 | 0.115* | 0.254 (7) |
C19' | 1.056 (2) | 0.3440 (8) | 0.2934 (7) | 0.084 (4)* | 0.254 (7) |
H19D | 1.1224 | 0.3233 | 0.2548 | 0.126* | 0.254 (7) |
H19E | 1.0224 | 0.2929 | 0.3321 | 0.126* | 0.254 (7) |
H19F | 1.1727 | 0.3744 | 0.3073 | 0.126* | 0.254 (7) |
Cl1A | 1.08169 (10) | −0.26825 (3) | 0.31097 (3) | 0.06033 (16) | |
O1A | 1.2494 (2) | 0.09656 (8) | −0.01986 (6) | 0.0430 (3) | |
N1A | 0.9635 (2) | 0.06117 (9) | 0.07076 (7) | 0.0368 (3) | |
N2A | 1.3088 (2) | −0.03410 (9) | 0.07700 (7) | 0.0367 (3) | |
H2A | 1.445 (4) | −0.0579 (13) | 0.0637 (10) | 0.042 (5)* | |
C1A | 0.9508 (3) | −0.01099 (11) | 0.13176 (9) | 0.0347 (3) | |
C2A | 1.1701 (3) | −0.07145 (11) | 0.13562 (9) | 0.0345 (3) | |
C3A | 1.2157 (3) | −0.15133 (11) | 0.18992 (9) | 0.0386 (4) | |
H3A | 1.3617 | −0.1914 | 0.1927 | 0.046* | |
C4A | 1.0307 (3) | −0.16868 (12) | 0.24037 (9) | 0.0414 (4) | |
C5A | 0.8119 (3) | −0.11037 (13) | 0.23750 (9) | 0.0425 (4) | |
H5A | 0.6934 | −0.1251 | 0.2724 | 0.051* | |
C6A | 0.7689 (3) | −0.02980 (12) | 0.18245 (9) | 0.0395 (4) | |
H6A | 0.6228 | 0.0102 | 0.1798 | 0.047* | |
C7A | 1.1823 (3) | 0.04634 (11) | 0.03651 (9) | 0.0358 (3) | |
C11A | 0.7749 (3) | 0.13966 (11) | 0.04375 (9) | 0.0394 (4) | |
H11C | 0.6153 | 0.1195 | 0.0505 | 0.047* | |
H11D | 0.8009 | 0.1657 | −0.0063 | 0.047* | |
C12A | 0.7736 (3) | 0.21293 (11) | 0.07887 (10) | 0.0403 (4) | |
H12C | 0.9238 | 0.2394 | 0.0667 | 0.048* | |
H12D | 0.7690 | 0.1857 | 0.1294 | 0.048* | |
C13A | 0.5537 (3) | 0.28753 (11) | 0.05638 (10) | 0.0416 (4) | |
H13C | 0.4042 | 0.2603 | 0.0661 | 0.050* | |
H13D | 0.5634 | 0.3166 | 0.0061 | 0.050* | |
C14A | 0.5394 (3) | 0.35946 (12) | 0.09357 (11) | 0.0477 (4) | |
H14C | 0.5532 | 0.3293 | 0.1437 | 0.057* | |
H14D | 0.6785 | 0.3920 | 0.0788 | 0.057* | |
C15A | 0.3046 (3) | 0.42779 (12) | 0.07968 (11) | 0.0486 (4) | |
H15C | 0.1654 | 0.3954 | 0.0950 | 0.058* | |
H15D | 0.2899 | 0.4577 | 0.0295 | 0.058* | |
C16A | 0.2936 (4) | 0.49973 (13) | 0.11649 (12) | 0.0521 (5) | |
H16C | 0.4253 | 0.5352 | 0.0984 | 0.062* | |
H16D | 0.3220 | 0.4696 | 0.1662 | 0.062* | |
C17A | 0.0511 (4) | 0.56397 (13) | 0.10765 (12) | 0.0513 (5) | |
H17E | 0.0253 | 0.5955 | 0.0581 | 0.062* | |
H17F | −0.0811 | 0.5283 | 0.1244 | 0.062* | |
C18A | 0.0374 (4) | 0.63392 (15) | 0.14628 (14) | 0.0618 (6) | |
H18E | 0.0751 | 0.6027 | 0.1953 | 0.074* | |
H18F | 0.1612 | 0.6728 | 0.1271 | 0.074* | |
C19A | −0.2113 (4) | 0.69262 (15) | 0.14139 (15) | 0.0666 (6) | |
H19G | −0.2089 | 0.7353 | 0.1668 | 0.100* | |
H19H | −0.3346 | 0.6548 | 0.1613 | 0.100* | |
H19I | −0.2483 | 0.7250 | 0.0930 | 0.100* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cl1 | 0.0582 (3) | 0.0627 (3) | 0.0485 (3) | 0.0098 (2) | −0.0121 (2) | −0.0134 (2) |
O1 | 0.0467 (7) | 0.0585 (8) | 0.0468 (7) | −0.0017 (6) | −0.0114 (6) | −0.0160 (6) |
N1 | 0.0388 (8) | 0.0488 (8) | 0.0421 (8) | −0.0026 (6) | −0.0022 (6) | −0.0155 (6) |
N2 | 0.0385 (8) | 0.0489 (8) | 0.0446 (8) | −0.0044 (7) | −0.0046 (6) | −0.0173 (7) |
C1 | 0.0345 (8) | 0.0476 (9) | 0.0414 (9) | 0.0018 (7) | 0.0004 (7) | −0.0191 (7) |
C2 | 0.0326 (8) | 0.0486 (9) | 0.0417 (9) | 0.0009 (7) | −0.0006 (7) | −0.0216 (7) |
C3 | 0.0403 (9) | 0.0458 (9) | 0.0444 (9) | 0.0003 (7) | 0.0009 (7) | −0.0180 (8) |
C4 | 0.0389 (9) | 0.0520 (10) | 0.0409 (9) | 0.0072 (7) | −0.0030 (7) | −0.0199 (8) |
C5 | 0.0350 (9) | 0.0607 (11) | 0.0495 (10) | 0.0022 (8) | −0.0059 (7) | −0.0269 (9) |
C6 | 0.0378 (9) | 0.0531 (10) | 0.0513 (10) | −0.0031 (8) | −0.0009 (8) | −0.0225 (8) |
C7 | 0.0361 (9) | 0.0513 (10) | 0.0429 (9) | 0.0024 (7) | −0.0026 (7) | −0.0202 (8) |
C11 | 0.0491 (11) | 0.0587 (11) | 0.0450 (10) | −0.0084 (9) | 0.0010 (8) | −0.0111 (9) |
C12 | 0.0517 (11) | 0.0519 (11) | 0.0547 (11) | −0.0041 (9) | −0.0080 (9) | −0.0050 (9) |
C13 | 0.0498 (11) | 0.0475 (10) | 0.0527 (11) | −0.0016 (8) | −0.0024 (9) | −0.0068 (8) |
C14 | 0.0552 (12) | 0.0441 (10) | 0.0616 (12) | −0.0007 (9) | −0.0009 (10) | −0.0037 (9) |
C15 | 0.0588 (12) | 0.0414 (10) | 0.0664 (13) | −0.0022 (9) | 0.0010 (10) | −0.0098 (9) |
C16 | 0.0811 (17) | 0.0474 (12) | 0.0872 (17) | 0.0025 (11) | 0.0077 (14) | −0.0166 (12) |
C17 | 0.119 (3) | 0.0678 (17) | 0.111 (2) | −0.0117 (16) | 0.022 (2) | −0.0447 (17) |
C18 | 0.199 (6) | 0.065 (2) | 0.074 (3) | 0.010 (3) | 0.041 (3) | −0.023 (2) |
C19 | 0.153 (6) | 0.113 (5) | 0.272 (9) | −0.012 (4) | 0.016 (6) | −0.119 (6) |
Cl1A | 0.0607 (3) | 0.0530 (3) | 0.0560 (3) | −0.0081 (2) | 0.0013 (2) | −0.0012 (2) |
O1A | 0.0374 (6) | 0.0425 (6) | 0.0453 (7) | −0.0005 (5) | 0.0027 (5) | −0.0113 (5) |
N1A | 0.0302 (7) | 0.0375 (7) | 0.0436 (7) | 0.0013 (5) | −0.0006 (6) | −0.0170 (6) |
N2A | 0.0275 (7) | 0.0388 (7) | 0.0432 (8) | 0.0019 (5) | 0.0023 (6) | −0.0156 (6) |
C1A | 0.0293 (8) | 0.0379 (8) | 0.0411 (8) | −0.0019 (6) | −0.0028 (6) | −0.0193 (7) |
C2A | 0.0279 (7) | 0.0385 (8) | 0.0415 (8) | −0.0033 (6) | −0.0005 (6) | −0.0195 (7) |
C3A | 0.0311 (8) | 0.0373 (8) | 0.0486 (9) | −0.0009 (6) | −0.0024 (7) | −0.0169 (7) |
C4A | 0.0403 (9) | 0.0410 (9) | 0.0438 (9) | −0.0081 (7) | −0.0021 (7) | −0.0131 (7) |
C5A | 0.0347 (9) | 0.0524 (10) | 0.0443 (9) | −0.0101 (7) | 0.0051 (7) | −0.0196 (8) |
C6A | 0.0277 (8) | 0.0484 (9) | 0.0462 (9) | −0.0004 (7) | 0.0000 (7) | −0.0229 (8) |
C7A | 0.0307 (8) | 0.0373 (8) | 0.0428 (9) | −0.0025 (6) | −0.0016 (7) | −0.0180 (7) |
C11A | 0.0311 (8) | 0.0411 (9) | 0.0470 (9) | 0.0034 (6) | −0.0060 (7) | −0.0182 (7) |
C12A | 0.0327 (8) | 0.0385 (8) | 0.0512 (10) | 0.0006 (6) | −0.0060 (7) | −0.0180 (7) |
C13A | 0.0365 (9) | 0.0385 (9) | 0.0480 (10) | 0.0032 (7) | −0.0047 (7) | −0.0146 (7) |
C14A | 0.0437 (10) | 0.0408 (9) | 0.0598 (11) | 0.0029 (7) | −0.0064 (8) | −0.0206 (8) |
C15A | 0.0428 (10) | 0.0432 (9) | 0.0617 (12) | 0.0037 (8) | −0.0047 (8) | −0.0229 (9) |
C16A | 0.0442 (10) | 0.0466 (10) | 0.0686 (13) | 0.0046 (8) | −0.0058 (9) | −0.0270 (9) |
C17A | 0.0435 (10) | 0.0449 (10) | 0.0684 (13) | 0.0037 (8) | −0.0053 (9) | −0.0260 (9) |
C18A | 0.0461 (11) | 0.0578 (12) | 0.0918 (16) | 0.0046 (9) | −0.0058 (10) | −0.0428 (12) |
C19A | 0.0532 (12) | 0.0552 (12) | 0.1005 (18) | 0.0067 (9) | −0.0053 (12) | −0.0434 (13) |
Cl1—C4 | 1.7478 (19) | C18'—H18D | 0.9700 |
O1—C7 | 1.236 (2) | C19'—H19D | 0.9600 |
N1—C7 | 1.376 (2) | C19'—H19E | 0.9600 |
N1—C1 | 1.395 (2) | C19'—H19F | 0.9600 |
N1—C11 | 1.458 (2) | Cl1A—C4A | 1.7435 (18) |
N2—C7 | 1.363 (2) | O1A—C7A | 1.234 (2) |
N2—C2 | 1.382 (2) | N1A—C7A | 1.376 (2) |
N2—H2 | 0.83 (2) | N1A—C1A | 1.389 (2) |
C1—C6 | 1.379 (3) | N1A—C11A | 1.457 (2) |
C1—C2 | 1.405 (3) | N2A—C7A | 1.370 (2) |
C2—C3 | 1.373 (3) | N2A—C2A | 1.385 (2) |
C3—C4 | 1.388 (3) | N2A—H2A | 0.85 (2) |
C3—H3 | 0.9300 | C1A—C6A | 1.383 (2) |
C4—C5 | 1.381 (3) | C1A—C2A | 1.400 (2) |
C5—C6 | 1.392 (3) | C2A—C3A | 1.376 (2) |
C5—H5 | 0.9300 | C3A—C4A | 1.391 (2) |
C6—H6 | 0.9300 | C3A—H3A | 0.9300 |
C11—C12 | 1.515 (3) | C4A—C5A | 1.383 (2) |
C11—H11A | 0.9700 | C5A—C6A | 1.389 (3) |
C11—H11B | 0.9700 | C5A—H5A | 0.9300 |
C12—C13 | 1.514 (3) | C6A—H6A | 0.9300 |
C12—H12A | 0.9700 | C11A—C12A | 1.521 (2) |
C12—H12B | 0.9700 | C11A—H11C | 0.9700 |
C13—C14 | 1.523 (3) | C11A—H11D | 0.9700 |
C13—H13A | 0.9700 | C12A—C13A | 1.522 (2) |
C13—H13B | 0.9700 | C12A—H12C | 0.9700 |
C14—C15 | 1.512 (3) | C12A—H12D | 0.9700 |
C14—H14A | 0.9700 | C13A—C14A | 1.523 (2) |
C14—H14B | 0.9700 | C13A—H13C | 0.9700 |
C15—C16 | 1.517 (3) | C13A—H13D | 0.9700 |
C15—H15A | 0.9700 | C14A—C15A | 1.519 (2) |
C15—H15B | 0.9700 | C14A—H14C | 0.9700 |
C16—C17 | 1.492 (4) | C14A—H14D | 0.9700 |
C16—H16A | 0.9700 | C15A—C16A | 1.519 (3) |
C16—H16B | 0.9700 | C15A—H15C | 0.9700 |
C17—C18' | 1.543 (11) | C15A—H15D | 0.9700 |
C17—C18 | 1.566 (5) | C16A—C17A | 1.521 (2) |
C17—H17A | 0.9700 | C16A—H16C | 0.9700 |
C17—H17B | 0.9700 | C16A—H16D | 0.9700 |
C17—H17C | 0.9700 | C17A—C18A | 1.517 (3) |
C17—H17D | 0.9700 | C17A—H17E | 0.9700 |
C18—C19 | 1.282 (7) | C17A—H17F | 0.9700 |
C18—H18A | 0.9700 | C18A—C19A | 1.512 (3) |
C18—H18B | 0.9700 | C18A—H18E | 0.9700 |
C19—H19A | 0.9600 | C18A—H18F | 0.9700 |
C19—H19B | 0.9600 | C19A—H19G | 0.9600 |
C19—H19C | 0.9600 | C19A—H19H | 0.9600 |
C18'—C19' | 1.202 (12) | C19A—H19I | 0.9600 |
C18'—H18C | 0.9700 | ||
C7—N1—C1 | 109.15 (15) | H19B—C19—H19C | 109.5 |
C7—N1—C11 | 121.78 (16) | C19'—C18'—C17 | 126.9 (12) |
C1—N1—C11 | 128.50 (16) | C19'—C18'—H18C | 105.6 |
C7—N2—C2 | 110.23 (16) | C17—C18'—H18C | 105.6 |
C7—N2—H2 | 123.3 (15) | C19'—C18'—H18D | 105.6 |
C2—N2—H2 | 126.5 (15) | C17—C18'—H18D | 105.6 |
C6—C1—N1 | 132.18 (18) | H18C—C18'—H18D | 106.1 |
C6—C1—C2 | 121.04 (17) | C18'—C19'—H19D | 109.5 |
N1—C1—C2 | 106.78 (15) | C18'—C19'—H19E | 109.5 |
C3—C2—N2 | 131.50 (17) | H19D—C19'—H19E | 109.5 |
C3—C2—C1 | 121.83 (16) | C18'—C19'—H19F | 109.5 |
N2—C2—C1 | 106.67 (16) | H19D—C19'—H19F | 109.5 |
C2—C3—C4 | 116.14 (17) | H19E—C19'—H19F | 109.5 |
C2—C3—H3 | 121.9 | C7A—N1A—C1A | 109.46 (13) |
C4—C3—H3 | 121.9 | C7A—N1A—C11A | 123.64 (14) |
C5—C4—C3 | 123.14 (17) | C1A—N1A—C11A | 126.86 (13) |
C5—C4—Cl1 | 118.22 (14) | C7A—N2A—C2A | 109.97 (13) |
C3—C4—Cl1 | 118.63 (15) | C7A—N2A—H2A | 122.0 (13) |
C4—C5—C6 | 120.23 (17) | C2A—N2A—H2A | 127.7 (13) |
C4—C5—H5 | 119.9 | C6A—C1A—N1A | 131.97 (15) |
C6—C5—H5 | 119.9 | C6A—C1A—C2A | 121.06 (15) |
C1—C6—C5 | 117.62 (18) | N1A—C1A—C2A | 106.96 (13) |
C1—C6—H6 | 121.2 | C3A—C2A—N2A | 131.38 (14) |
C5—C6—H6 | 121.2 | C3A—C2A—C1A | 121.85 (15) |
O1—C7—N2 | 127.51 (18) | N2A—C2A—C1A | 106.77 (14) |
O1—C7—N1 | 125.34 (18) | C2A—C3A—C4A | 116.09 (15) |
N2—C7—N1 | 107.16 (15) | C2A—C3A—H3A | 122.0 |
N1—C11—C12 | 113.94 (16) | C4A—C3A—H3A | 122.0 |
N1—C11—H11A | 108.8 | C5A—C4A—C3A | 123.16 (16) |
C12—C11—H11A | 108.8 | C5A—C4A—Cl1A | 118.98 (14) |
N1—C11—H11B | 108.8 | C3A—C4A—Cl1A | 117.85 (13) |
C12—C11—H11B | 108.8 | C4A—C5A—C6A | 120.05 (16) |
H11A—C11—H11B | 107.7 | C4A—C5A—H5A | 120.0 |
C13—C12—C11 | 115.51 (17) | C6A—C5A—H5A | 120.0 |
C13—C12—H12A | 108.4 | C1A—C6A—C5A | 117.78 (15) |
C11—C12—H12A | 108.4 | C1A—C6A—H6A | 121.1 |
C13—C12—H12B | 108.4 | C5A—C6A—H6A | 121.1 |
C11—C12—H12B | 108.4 | O1A—C7A—N2A | 127.19 (15) |
H12A—C12—H12B | 107.5 | O1A—C7A—N1A | 125.98 (15) |
C12—C13—C14 | 112.76 (17) | N2A—C7A—N1A | 106.83 (14) |
C12—C13—H13A | 109.0 | N1A—C11A—C12A | 113.23 (14) |
C14—C13—H13A | 109.0 | N1A—C11A—H11C | 108.9 |
C12—C13—H13B | 109.0 | C12A—C11A—H11C | 108.9 |
C14—C13—H13B | 109.0 | N1A—C11A—H11D | 108.9 |
H13A—C13—H13B | 107.8 | C12A—C11A—H11D | 108.9 |
C15—C14—C13 | 114.34 (17) | H11C—C11A—H11D | 107.7 |
C15—C14—H14A | 108.7 | C11A—C12A—C13A | 111.52 (14) |
C13—C14—H14A | 108.7 | C11A—C12A—H12C | 109.3 |
C15—C14—H14B | 108.7 | C13A—C12A—H12C | 109.3 |
C13—C14—H14B | 108.7 | C11A—C12A—H12D | 109.3 |
H14A—C14—H14B | 107.6 | C13A—C12A—H12D | 109.3 |
C14—C15—C16 | 113.1 (2) | H12C—C12A—H12D | 108.0 |
C14—C15—H15A | 109.0 | C12A—C13A—C14A | 112.85 (15) |
C16—C15—H15A | 109.0 | C12A—C13A—H13C | 109.0 |
C14—C15—H15B | 109.0 | C14A—C13A—H13C | 109.0 |
C16—C15—H15B | 109.0 | C12A—C13A—H13D | 109.0 |
H15A—C15—H15B | 107.8 | C14A—C13A—H13D | 109.0 |
C17—C16—C15 | 114.6 (2) | H13C—C13A—H13D | 107.8 |
C17—C16—H16A | 108.6 | C15A—C14A—C13A | 114.10 (16) |
C15—C16—H16A | 108.6 | C15A—C14A—H14C | 108.7 |
C17—C16—H16B | 108.6 | C13A—C14A—H14C | 108.7 |
C15—C16—H16B | 108.6 | C15A—C14A—H14D | 108.7 |
H16A—C16—H16B | 107.6 | C13A—C14A—H14D | 108.7 |
C16—C17—C18' | 128.3 (6) | H14C—C14A—H14D | 107.6 |
C16—C17—C18 | 109.5 (3) | C14A—C15A—C16A | 113.61 (16) |
C18'—C17—C18 | 35.5 (5) | C14A—C15A—H15C | 108.8 |
C16—C17—H17A | 109.8 | C16A—C15A—H15C | 108.8 |
C18'—C17—H17A | 74.6 | C14A—C15A—H15D | 108.8 |
C18—C17—H17A | 109.8 | C16A—C15A—H15D | 108.8 |
C16—C17—H17B | 109.8 | H15C—C15A—H15D | 107.7 |
C18'—C17—H17B | 117.5 | C15A—C16A—C17A | 114.03 (16) |
C18—C17—H17B | 109.8 | C15A—C16A—H16C | 108.7 |
H17A—C17—H17B | 108.2 | C17A—C16A—H16C | 108.7 |
C16—C17—H17C | 105.2 | C15A—C16A—H16D | 108.7 |
C18'—C17—H17C | 105.2 | C17A—C16A—H16D | 108.7 |
C18—C17—H17C | 139.6 | H16C—C16A—H16D | 107.6 |
H17A—C17—H17C | 36.9 | C18A—C17A—C16A | 114.01 (17) |
H17B—C17—H17C | 76.1 | C18A—C17A—H17E | 108.8 |
C16—C17—H17D | 105.2 | C16A—C17A—H17E | 108.8 |
C18'—C17—H17D | 105.2 | C18A—C17A—H17F | 108.8 |
C18—C17—H17D | 84.3 | C16A—C17A—H17F | 108.8 |
H17A—C17—H17D | 134.3 | H17E—C17A—H17F | 107.6 |
H17B—C17—H17D | 30.1 | C19A—C18A—C17A | 113.28 (18) |
H17C—C17—H17D | 105.9 | C19A—C18A—H18E | 108.9 |
C19—C18—C17 | 117.6 (5) | C17A—C18A—H18E | 108.9 |
C19—C18—H18A | 107.9 | C19A—C18A—H18F | 108.9 |
C17—C18—H18A | 107.9 | C17A—C18A—H18F | 108.9 |
C19—C18—H18B | 107.9 | H18E—C18A—H18F | 107.7 |
C17—C18—H18B | 107.9 | C18A—C19A—H19G | 109.5 |
H18A—C18—H18B | 107.2 | C18A—C19A—H19H | 109.5 |
C18—C19—H19A | 109.5 | H19G—C19A—H19H | 109.5 |
C18—C19—H19B | 109.5 | C18A—C19A—H19I | 109.5 |
H19A—C19—H19B | 109.5 | H19G—C19A—H19I | 109.5 |
C18—C19—H19C | 109.5 | H19H—C19A—H19I | 109.5 |
H19A—C19—H19C | 109.5 | ||
C7—N1—C1—C6 | −179.22 (18) | C16—C17—C18'—C19' | 26 (2) |
C11—N1—C1—C6 | −7.9 (3) | C18—C17—C18'—C19' | −42.3 (13) |
C7—N1—C1—C2 | 0.62 (18) | C7A—N1A—C1A—C6A | −177.64 (17) |
C11—N1—C1—C2 | 171.91 (16) | C11A—N1A—C1A—C6A | −0.1 (3) |
C7—N2—C2—C3 | −179.52 (17) | C7A—N1A—C1A—C2A | 0.82 (18) |
C7—N2—C2—C1 | 0.68 (18) | C11A—N1A—C1A—C2A | 178.39 (14) |
C6—C1—C2—C3 | −0.7 (3) | C7A—N2A—C2A—C3A | 178.36 (17) |
N1—C1—C2—C3 | 179.40 (14) | C7A—N2A—C2A—C1A | −0.95 (18) |
C6—C1—C2—N2 | 179.08 (15) | C6A—C1A—C2A—C3A | −0.6 (2) |
N1—C1—C2—N2 | −0.78 (18) | N1A—C1A—C2A—C3A | −179.32 (14) |
N2—C2—C3—C4 | −178.71 (17) | C6A—C1A—C2A—N2A | 178.74 (15) |
C1—C2—C3—C4 | 1.1 (2) | N1A—C1A—C2A—N2A | 0.07 (17) |
C2—C3—C4—C5 | −0.7 (2) | N2A—C2A—C3A—C4A | −178.81 (16) |
C2—C3—C4—Cl1 | −179.55 (12) | C1A—C2A—C3A—C4A | 0.4 (2) |
C3—C4—C5—C6 | −0.1 (3) | C2A—C3A—C4A—C5A | 0.0 (3) |
Cl1—C4—C5—C6 | 178.81 (13) | C2A—C3A—C4A—Cl1A | −179.05 (12) |
N1—C1—C6—C5 | 179.77 (17) | C3A—C4A—C5A—C6A | −0.3 (3) |
C2—C1—C6—C5 | 0.0 (2) | Cl1A—C4A—C5A—C6A | 178.81 (13) |
C4—C5—C6—C1 | 0.4 (3) | N1A—C1A—C6A—C5A | 178.69 (16) |
C2—N2—C7—O1 | 179.57 (17) | C2A—C1A—C6A—C5A | 0.4 (2) |
C2—N2—C7—N1 | −0.30 (19) | C4A—C5A—C6A—C1A | 0.0 (3) |
C1—N1—C7—O1 | 179.92 (16) | C2A—N2A—C7A—O1A | −178.60 (16) |
C11—N1—C7—O1 | 7.9 (3) | C2A—N2A—C7A—N1A | 1.45 (18) |
C1—N1—C7—N2 | −0.20 (18) | C1A—N1A—C7A—O1A | 178.65 (15) |
C11—N1—C7—N2 | −172.19 (15) | C11A—N1A—C7A—O1A | 1.0 (3) |
C7—N1—C11—C12 | −93.8 (2) | C1A—N1A—C7A—N2A | −1.40 (18) |
C1—N1—C11—C12 | 95.8 (2) | C11A—N1A—C7A—N2A | −179.06 (14) |
N1—C11—C12—C13 | −73.8 (2) | C7A—N1A—C11A—C12A | −101.69 (18) |
C11—C12—C13—C14 | −178.88 (17) | C1A—N1A—C11A—C12A | 81.1 (2) |
C12—C13—C14—C15 | 177.21 (18) | N1A—C11A—C12A—C13A | −172.36 (14) |
C13—C14—C15—C16 | 176.70 (19) | C11A—C12A—C13A—C14A | 176.96 (15) |
C14—C15—C16—C17 | 177.7 (2) | C12A—C13A—C14A—C15A | −172.27 (16) |
C15—C16—C17—C18' | 151.9 (8) | C13A—C14A—C15A—C16A | −179.44 (17) |
C15—C16—C17—C18 | −173.2 (3) | C14A—C15A—C16A—C17A | −175.42 (18) |
C16—C17—C18—C19 | 178.6 (6) | C15A—C16A—C17A—C18A | 178.20 (19) |
C18'—C17—C18—C19 | −51.9 (10) | C16A—C17A—C18A—C19A | −175.7 (2) |
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2···O1i | 0.83 (2) | 1.96 (2) | 2.778 (2) | 170 (2) |
N2A—H2A···O1Aii | 0.85 (2) | 1.95 (2) | 2.7937 (18) | 171.1 (19) |
Symmetry codes: (i) −x+2, −y+2, −z+1; (ii) −x+3, −y, −z. |
Experimental details
Crystal data | |
Chemical formula | C16H23ClN2O |
Mr | 294.81 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 296 |
a, b, c (Å) | 5.51441 (17), 15.6507 (4), 20.0540 (6) |
α, β, γ (°) | 71.807 (3), 86.612 (2), 80.709 (2) |
V (Å3) | 1622.59 (8) |
Z | 4 |
Radiation type | Cu Kα |
µ (mm−1) | 2.06 |
Crystal size (mm) | 0.43 × 0.20 × 0.16 |
Data collection | |
Diffractometer | Agilent SuperNova Dual (Cu at zero) Atlas |
Absorption correction | Multi-scan (SADABS; Sheldrick, 1996) |
Tmin, Tmax | 0.640, 0.720 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 31859, 6416, 5705 |
Rint | 0.031 |
(sin θ/λ)max (Å−1) | 0.622 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.044, 0.124, 1.03 |
No. of reflections | 6416 |
No. of parameters | 379 |
No. of restraints | 9 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.46, −0.32 |
Computer programs: CrysAlis PRO (Agilent, 2011), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), XP (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2···O1i | 0.83 (2) | 1.96 (2) | 2.778 (2) | 170 (2) |
N2A—H2A···O1Aii | 0.85 (2) | 1.95 (2) | 2.7937 (18) | 171.1 (19) |
Symmetry codes: (i) −x+2, −y+2, −z+1; (ii) −x+3, −y, −z. |
References
Agilent (2011). CrysAlis PRO. Agilent Technologies, Yarnton, England. Google Scholar
Al Muhaimeed, H. (1997). J. Int. Med. Res. 25, 175–181. CAS PubMed Web of Science Google Scholar
Nakano, H., Inoue, T., Kawasaki, N., Miyataka, H., Matsumoto, H., Taguchi, T., Inagaki, N., Nagai, H. & Satoh, T. (2000). Bioorg. Med. Chem. 8, 373–380. Web of Science CrossRef PubMed CAS Google Scholar
Ouzidan, Y., Kandri Rodi, Y., Butcher, R. J., Essassi, E. M. & El Ammari, L. (2011a). Acta Cryst. E67, o283. Web of Science CSD CrossRef IUCr Journals Google Scholar
Ouzidan, Y., Kandri Rodi, Y., Saffon, N., Essassi, E. M. & Ng, S. W. (2011b). Acta Cryst. E67, o520. Web of Science CSD CrossRef IUCr Journals Google Scholar
Scott, L. J., Dunn, C. J., Mallarkey, G. & Sharpe, M. (2002). Drugs, 62, 1503–1538. Web of Science CrossRef PubMed CAS Google Scholar
Sheldrick, G. M. (1996). SADABS. University of Göttingen, Germany. Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Zarrinmayeh, H., Nunes, A. M., Ornstein, P. L., Zimmerman, D. M., Arnold, M. B., Schober, D. A., Gackenheimer, S. L., Bruns, R. F., Hipskind, P. A., Britton, T. C., Cantrell, B. E. & Gehlert, D. R. (1998). J. Med. Chem. 41, 2709–2719. Web of Science CSD CrossRef CAS PubMed Google Scholar
Zhu, Z., Lippa, B., Drach, J. C. & Townsend, L. B. (2000). J. Med. Chem. 43, 2430–2437. Web of Science CrossRef PubMed CAS Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Benzimidazoles and their derivatives exhibit a number of important pharmacological properties, such as antihistaminic (Al Muhaimeed, 1997) anti-ulcerative (Scott et al., 2002) and antiallergic (Nakano et al., 2000). In addition, benzimidazole derivatives are effective against the human cytomegalovirus (HCMV) (Zhu et al., 2000) and are also efficient selective neuropeptide Y Y1 receptor antagonists (Zarrinmayeh et al., 1998).
As a continuation of our research work devoted to the development of substituted benzimidazol-2-one derivatives (Ouzidan et al., 2011a, 2011b), we report the synthesis of a new benzimidazol-2-one derivative by action of nonyl bromide with 5-chloro-1,3-dihydrobenzimidazol-2-one. The reaction provided the title compound (Scheme 1).
The asymmetric unit of the title compound, C16H23ClN2O is built up from two independent molecules with different orientations as shown in Fig.1. The two fused five and six-membered rings building each molecule are almost planar with the maximum deviation of 0.011 (2) Å and 0.016 (2) Å for N2 in the first molecule (C1 to C19) and for C1A in the second molecule (C1A to C19A), respectively. The dihedral angle between the two benzimidazole rings is 66.65 (7)°. The nonyl groups are almost perpendicular to the benzimidazole planes as indicated by the torsion angles of C1—N1—C11—C12 = 96.0 (3) ° and C1A—N1A—C11A—C12A = 81.0 (2) °.
In the crystal structure, each molecule forms a hydrogen bonded centrosymmetrical dimer as shown in Fig.2.