organic compounds
7′-[4-(Trifluoromethyl)phenyl]-5′,6′,7′,7a'-tetrahydrodispiro[indan-2,5′-pyrrolo[1,2-c][1,3]thiazole-6′,2′′-indan]-1,3,1′′-trione
aInstitute for Research in Molecular Medicine, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia, and bX-ray Crystallography Unit, School of Physics, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia
*Correspondence e-mail: hkfun@usm.my
In the title compound, C29H20F3NO3S, the thiazolidine ringadopts a half-chair conformation. The pyrrolidine and two five-membered carbocyclic rings are in envelope conformations with the spiro C atoms at the flaps. The trifluoromethyl-substituted benzene ring forms dihedral angles of 62.37 (14) and 87.40 (14)° with the benzene rings of the dihydro-1H-indene units. The two benzene rings form a dihedral angle of 36.94 (15)°. The molecular structure is stabilized by intramolecular C—H⋯O hydrogen bonds, which generate S(6) ring motifs. In the crystal, molecules are linked into inversion dimers by pairs of intermolecular C—H⋯O hydrogen bonds, generating R22(10) ring motifs.
Related literature
For related structures, see: Wei, Ali, Choon et al. (2011a,b); Wei, Ali, Ismail et al. (2011); Wei, Ali, Yoon et al. (2011); Kumar et al. (2010). For hydrogen-bond motifs, see: Bernstein et al. (1995). For ring conformations, see: Cremer & Pople (1975). For bond-length data, see: Allen et al. (1987).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2009); cell SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009).
Supporting information
https://doi.org/10.1107/S1600536811047118/is5003sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536811047118/is5003Isup2.hkl
A mixture of (Z)-2-(4-trifluoromethylbenzylidene)-2,3-dihydro-1 H-indene-1-one (0.001 mmol), ninhydrin (0.001 mmol) and thiazolidine -4-carboxylic acid (0.002 mmol) (1:1:2) were dissolved in methanol (10 ml) and refluxed for 4 h. After completion of the reaction as evident from TLC, the mixture was poured into crushed ice. The precipitated solid was filtered, washed with water and recrystallised from petroleum ether-ethyl acetate mixture (1:1) to reveal the title compound as yellow crystals.
All H atoms were positioned geometrically and refined using a riding model with C—H = 0.93–0.98 Å and Uiso(H) = 1.2Ueq(C).
As part of our ongoing search for novel
with antitubercular activity (Wei, Ali, Choon et al., 2011a,b; Wei, Ali, Ismail et al., 2011; Wei, Ali, Yoon et al., 2011), our group has synthesized the title compound as described below.The molecular structure is shown in Fig. 1. The thiazolidine (S1/N1/C27-C29) ring is twisted about the S1—C28 bond, with puckering parameters (Cremer & Pople, 1975) Q = 0.405 (3) Å and φ = 204.5 (4)°, thereby adopting a half-chair conformation. The pyrrolidine (N1/C9/C10/C19/C27) and two five-membered carbocyclic (C1/C2/C7-C9 and C10-C12/C17/C18) rings are in envelope conformations, puckering parameters (Cremer & Pople, 1975) Q = 0.458 (2) Å and φ = 65.6 (3)° with atom C10 at the flap; Q = 0.178 (3) Å and φ = 322.2 (8)° with atom C9 at the flap; and Q = 0.202 (3) Å and φ = 352.7 (8)° with atom C10 at the flap, respectively. Bond lengths (Allen et al., 1987) and angles are within normal ranges and are comparable to related structures (Kumar et al., 2010; Wei, Ali, Choon et al., 2011a,b; Wei, Ali, Ismail et al., 2011; Wei, Ali, Yoon et al., 2011). The trifluoromethyl-bound benzene (C20–C25) ring forms dihedral angles of 62.37 (14) and 87.40 (14)° with the other two benzene (C2–C7 and C12–C17) rings, respectively. The two benzene rings form a dihedral angle of 36.94 (15)°. The molecular structure is stabilized by intramolecular C18—H18A···O2 and C19—H19A···O1 hydrogen bonds (Table 1), which generate S(6) ring motifs (Fig. 1; Bernstein et al., 1995).
In the crystal (Fig. 2), molecules are linked into inversion dimers by pairs of intermolecular C3—H3A···O1 hydrogen bonds (Table 1), generating ten-membered R22(10) ring motifs (Bernstein et al., 1995).
For related structures, see: Wei, Ali, Choon et al. (2011a,b); Wei, Ali, Ismail et al. (2011); Wei, Ali, Yoon et al. (2011); Kumar et al. (2010). For hydrogen-bond motifs, see: Bernstein et al. (1995). For ring conformations, see: Cremer & Pople (1975). For bond-length data, see: Allen et al. (1987).
Data collection: APEX2 (Bruker, 2009); cell
SAINT (Bruker, 2009); data reduction: SAINT (Bruker, 2009); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).C29H20F3NO3S | Z = 2 |
Mr = 519.52 | F(000) = 536 |
Triclinic, P1 | Dx = 1.445 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 8.5894 (9) Å | Cell parameters from 5253 reflections |
b = 12.3144 (13) Å | θ = 2.9–28.1° |
c = 12.6109 (15) Å | µ = 0.19 mm−1 |
α = 68.181 (1)° | T = 296 K |
β = 87.589 (2)° | Block, yellow |
γ = 74.960 (2)° | 0.23 × 0.22 × 0.09 mm |
V = 1193.7 (2) Å3 |
Bruker SMART APEXII DUO CCD area-detector diffractometer | 6922 independent reflections |
Radiation source: fine-focus sealed tube | 4508 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.038 |
φ and ω scans | θmax = 30.1°, θmin = 1.7° |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | h = −12→12 |
Tmin = 0.957, Tmax = 0.983 | k = −17→17 |
25475 measured reflections | l = −17→17 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.063 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.216 | H-atom parameters constrained |
S = 1.05 | w = 1/[σ2(Fo2) + (0.1159P)2 + 0.3319P] where P = (Fo2 + 2Fc2)/3 |
6922 reflections | (Δ/σ)max = 0.001 |
334 parameters | Δρmax = 0.73 e Å−3 |
0 restraints | Δρmin = −0.69 e Å−3 |
C29H20F3NO3S | γ = 74.960 (2)° |
Mr = 519.52 | V = 1193.7 (2) Å3 |
Triclinic, P1 | Z = 2 |
a = 8.5894 (9) Å | Mo Kα radiation |
b = 12.3144 (13) Å | µ = 0.19 mm−1 |
c = 12.6109 (15) Å | T = 296 K |
α = 68.181 (1)° | 0.23 × 0.22 × 0.09 mm |
β = 87.589 (2)° |
Bruker SMART APEXII DUO CCD area-detector diffractometer | 6922 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | 4508 reflections with I > 2σ(I) |
Tmin = 0.957, Tmax = 0.983 | Rint = 0.038 |
25475 measured reflections |
R[F2 > 2σ(F2)] = 0.063 | 0 restraints |
wR(F2) = 0.216 | H-atom parameters constrained |
S = 1.05 | Δρmax = 0.73 e Å−3 |
6922 reflections | Δρmin = −0.69 e Å−3 |
334 parameters |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
S1 | 0.96436 (9) | 0.35285 (8) | 0.03916 (7) | 0.0605 (2) | |
F1 | 0.0800 (4) | 0.0579 (3) | −0.1089 (2) | 0.1228 (12) | |
F2 | 0.0364 (3) | 0.23905 (19) | −0.2219 (2) | 0.0861 (7) | |
F3 | 0.2346 (3) | 0.1062 (3) | −0.2398 (2) | 0.1037 (9) | |
O1 | 0.8556 (2) | 0.10792 (17) | 0.32038 (17) | 0.0543 (5) | |
O2 | 0.5498 (3) | 0.48429 (15) | 0.31011 (16) | 0.0504 (5) | |
O3 | 0.4883 (2) | 0.07066 (15) | 0.36158 (15) | 0.0499 (4) | |
N1 | 0.7039 (2) | 0.36282 (17) | 0.15914 (15) | 0.0335 (4) | |
C1 | 0.7605 (3) | 0.1814 (2) | 0.34956 (19) | 0.0360 (5) | |
C2 | 0.7386 (3) | 0.1793 (2) | 0.46658 (19) | 0.0371 (5) | |
C3 | 0.8044 (3) | 0.0862 (2) | 0.5701 (2) | 0.0469 (6) | |
H3A | 0.8676 | 0.0115 | 0.5723 | 0.056* | |
C4 | 0.7723 (4) | 0.1090 (3) | 0.6684 (2) | 0.0622 (8) | |
H4A | 0.8148 | 0.0483 | 0.7383 | 0.075* | |
C5 | 0.6787 (5) | 0.2192 (3) | 0.6666 (2) | 0.0678 (9) | |
H5A | 0.6596 | 0.2312 | 0.7351 | 0.081* | |
C6 | 0.6127 (4) | 0.3124 (3) | 0.5648 (2) | 0.0565 (7) | |
H6A | 0.5489 | 0.3865 | 0.5638 | 0.068* | |
C7 | 0.6452 (3) | 0.2912 (2) | 0.46404 (19) | 0.0384 (5) | |
C8 | 0.6005 (3) | 0.3756 (2) | 0.34347 (19) | 0.0361 (5) | |
C9 | 0.6437 (2) | 0.29994 (18) | 0.26748 (17) | 0.0303 (4) | |
C10 | 0.4929 (2) | 0.27225 (18) | 0.22533 (16) | 0.0297 (4) | |
C11 | 0.4296 (3) | 0.1790 (2) | 0.32498 (17) | 0.0346 (4) | |
C12 | 0.2880 (3) | 0.2481 (2) | 0.36452 (19) | 0.0386 (5) | |
C13 | 0.2053 (4) | 0.2083 (3) | 0.4635 (2) | 0.0522 (7) | |
H13A | 0.2355 | 0.1281 | 0.5145 | 0.063* | |
C14 | 0.0782 (4) | 0.2912 (3) | 0.4831 (3) | 0.0622 (8) | |
H14A | 0.0208 | 0.2669 | 0.5482 | 0.075* | |
C15 | 0.0340 (4) | 0.4113 (3) | 0.4068 (3) | 0.0624 (8) | |
H15A | −0.0526 | 0.4660 | 0.4218 | 0.075* | |
C16 | 0.1164 (3) | 0.4511 (3) | 0.3090 (2) | 0.0496 (6) | |
H16A | 0.0868 | 0.5316 | 0.2588 | 0.060* | |
C17 | 0.2450 (3) | 0.3672 (2) | 0.28753 (19) | 0.0362 (5) | |
C18 | 0.3494 (3) | 0.3862 (2) | 0.18652 (18) | 0.0352 (4) | |
H18A | 0.3856 | 0.4589 | 0.1694 | 0.042* | |
H18B | 0.2912 | 0.3927 | 0.1192 | 0.042* | |
C19 | 0.5698 (3) | 0.22744 (19) | 0.13116 (17) | 0.0319 (4) | |
H19A | 0.6447 | 0.1477 | 0.1703 | 0.038* | |
C20 | 0.4566 (3) | 0.21104 (19) | 0.05324 (17) | 0.0329 (4) | |
C21 | 0.4027 (3) | 0.1066 (2) | 0.09141 (19) | 0.0422 (5) | |
H21A | 0.4346 | 0.0500 | 0.1651 | 0.051* | |
C22 | 0.3029 (4) | 0.0844 (2) | 0.0232 (2) | 0.0468 (6) | |
H22A | 0.2671 | 0.0144 | 0.0513 | 0.056* | |
C23 | 0.2565 (3) | 0.1670 (2) | −0.08730 (19) | 0.0388 (5) | |
C24 | 0.3089 (3) | 0.2709 (2) | −0.1275 (2) | 0.0464 (6) | |
H24A | 0.2788 | 0.3262 | −0.2019 | 0.056* | |
C25 | 0.4062 (3) | 0.2935 (2) | −0.0577 (2) | 0.0438 (6) | |
H25A | 0.4385 | 0.3650 | −0.0853 | 0.053* | |
C26 | 0.1537 (4) | 0.1431 (2) | −0.1638 (2) | 0.0507 (6) | |
C27 | 0.6737 (3) | 0.3150 (2) | 0.07265 (18) | 0.0363 (5) | |
H27A | 0.6121 | 0.3817 | 0.0059 | 0.044* | |
C28 | 0.8365 (4) | 0.2580 (3) | 0.0364 (3) | 0.0570 (7) | |
H28A | 0.8261 | 0.2578 | −0.0398 | 0.068* | |
H28B | 0.8801 | 0.1753 | 0.0894 | 0.068* | |
C29 | 0.8651 (3) | 0.3807 (3) | 0.1593 (2) | 0.0479 (6) | |
H29A | 0.9261 | 0.3252 | 0.2302 | 0.058* | |
H29B | 0.8578 | 0.4629 | 0.1526 | 0.058* |
U11 | U22 | U33 | U12 | U13 | U23 | |
S1 | 0.0445 (4) | 0.0840 (6) | 0.0729 (5) | −0.0327 (4) | 0.0244 (3) | −0.0430 (4) |
F1 | 0.182 (3) | 0.124 (2) | 0.0866 (16) | −0.110 (2) | −0.0369 (17) | −0.0150 (14) |
F2 | 0.0781 (14) | 0.0770 (13) | 0.1073 (17) | 0.0055 (11) | −0.0465 (13) | −0.0507 (12) |
F3 | 0.0924 (16) | 0.151 (2) | 0.0966 (17) | 0.0001 (15) | −0.0160 (13) | −0.0971 (17) |
O1 | 0.0494 (10) | 0.0514 (11) | 0.0527 (11) | 0.0130 (9) | −0.0126 (9) | −0.0248 (9) |
O2 | 0.0688 (12) | 0.0320 (9) | 0.0500 (10) | −0.0087 (8) | 0.0040 (9) | −0.0178 (7) |
O3 | 0.0666 (12) | 0.0343 (9) | 0.0400 (9) | −0.0134 (8) | 0.0011 (8) | −0.0038 (7) |
N1 | 0.0341 (9) | 0.0377 (9) | 0.0316 (8) | −0.0148 (8) | 0.0040 (7) | −0.0127 (7) |
C1 | 0.0337 (11) | 0.0358 (11) | 0.0367 (11) | −0.0051 (9) | −0.0052 (9) | −0.0134 (9) |
C2 | 0.0371 (11) | 0.0405 (12) | 0.0341 (10) | −0.0127 (9) | −0.0038 (9) | −0.0120 (9) |
C3 | 0.0472 (14) | 0.0457 (13) | 0.0394 (12) | −0.0132 (11) | −0.0091 (10) | −0.0047 (10) |
C4 | 0.072 (2) | 0.071 (2) | 0.0339 (13) | −0.0281 (17) | −0.0066 (13) | −0.0021 (13) |
C5 | 0.085 (2) | 0.090 (2) | 0.0337 (13) | −0.030 (2) | 0.0109 (14) | −0.0248 (14) |
C6 | 0.0712 (19) | 0.0616 (17) | 0.0434 (14) | −0.0172 (15) | 0.0099 (13) | −0.0280 (13) |
C7 | 0.0431 (12) | 0.0413 (12) | 0.0334 (10) | −0.0130 (10) | 0.0018 (9) | −0.0156 (9) |
C8 | 0.0391 (11) | 0.0354 (11) | 0.0350 (11) | −0.0090 (9) | 0.0023 (9) | −0.0149 (9) |
C9 | 0.0304 (10) | 0.0296 (9) | 0.0296 (9) | −0.0064 (8) | −0.0007 (7) | −0.0102 (8) |
C10 | 0.0300 (9) | 0.0288 (9) | 0.0260 (9) | −0.0065 (8) | −0.0003 (7) | −0.0062 (7) |
C11 | 0.0410 (11) | 0.0351 (11) | 0.0254 (9) | −0.0144 (9) | −0.0002 (8) | −0.0056 (8) |
C12 | 0.0415 (12) | 0.0496 (13) | 0.0311 (10) | −0.0207 (10) | 0.0053 (9) | −0.0166 (9) |
C13 | 0.0595 (16) | 0.0697 (18) | 0.0379 (12) | −0.0341 (15) | 0.0137 (11) | −0.0216 (12) |
C14 | 0.0572 (17) | 0.102 (3) | 0.0465 (15) | −0.0369 (18) | 0.0211 (13) | −0.0405 (17) |
C15 | 0.0451 (15) | 0.097 (2) | 0.0654 (19) | −0.0165 (16) | 0.0124 (13) | −0.0555 (19) |
C16 | 0.0370 (12) | 0.0615 (16) | 0.0567 (15) | −0.0074 (11) | 0.0008 (11) | −0.0327 (13) |
C17 | 0.0303 (10) | 0.0467 (12) | 0.0350 (10) | −0.0114 (9) | 0.0004 (8) | −0.0180 (9) |
C18 | 0.0312 (10) | 0.0339 (10) | 0.0335 (10) | −0.0046 (8) | −0.0018 (8) | −0.0070 (8) |
C19 | 0.0330 (10) | 0.0330 (10) | 0.0289 (9) | −0.0097 (8) | 0.0006 (8) | −0.0101 (8) |
C20 | 0.0352 (10) | 0.0347 (10) | 0.0293 (9) | −0.0115 (9) | 0.0023 (8) | −0.0108 (8) |
C21 | 0.0542 (14) | 0.0390 (12) | 0.0321 (10) | −0.0201 (11) | −0.0032 (10) | −0.0059 (9) |
C22 | 0.0642 (16) | 0.0409 (13) | 0.0417 (12) | −0.0262 (12) | −0.0007 (11) | −0.0137 (10) |
C23 | 0.0413 (12) | 0.0410 (12) | 0.0376 (11) | −0.0089 (10) | −0.0019 (9) | −0.0194 (9) |
C24 | 0.0577 (15) | 0.0471 (13) | 0.0304 (11) | −0.0175 (12) | −0.0057 (10) | −0.0067 (9) |
C25 | 0.0559 (14) | 0.0404 (12) | 0.0336 (11) | −0.0233 (11) | −0.0052 (10) | −0.0042 (9) |
C26 | 0.0620 (17) | 0.0474 (14) | 0.0468 (14) | −0.0112 (13) | −0.0080 (12) | −0.0232 (11) |
C27 | 0.0381 (11) | 0.0443 (12) | 0.0313 (10) | −0.0175 (10) | 0.0048 (8) | −0.0152 (9) |
C28 | 0.0521 (15) | 0.0745 (19) | 0.0665 (18) | −0.0302 (15) | 0.0277 (13) | −0.0445 (16) |
C29 | 0.0423 (13) | 0.0613 (16) | 0.0507 (14) | −0.0265 (12) | 0.0071 (11) | −0.0245 (12) |
S1—C29 | 1.807 (3) | C13—C14 | 1.372 (5) |
S1—C28 | 1.809 (3) | C13—H13A | 0.9300 |
F1—C26 | 1.322 (4) | C14—C15 | 1.393 (5) |
F2—C26 | 1.323 (3) | C14—H14A | 0.9300 |
F3—C26 | 1.308 (4) | C15—C16 | 1.386 (4) |
O1—C1 | 1.209 (3) | C15—H15A | 0.9300 |
O2—C8 | 1.205 (3) | C16—C17 | 1.396 (4) |
O3—C11 | 1.208 (3) | C16—H16A | 0.9300 |
N1—C9 | 1.447 (3) | C17—C18 | 1.508 (3) |
N1—C29 | 1.458 (3) | C18—H18A | 0.9700 |
N1—C27 | 1.478 (3) | C18—H18B | 0.9700 |
C1—C2 | 1.471 (3) | C19—C20 | 1.510 (3) |
C1—C9 | 1.553 (3) | C19—C27 | 1.534 (3) |
C2—C7 | 1.393 (3) | C19—H19A | 0.9800 |
C2—C3 | 1.397 (3) | C20—C21 | 1.389 (3) |
C3—C4 | 1.371 (4) | C20—C25 | 1.394 (3) |
C3—H3A | 0.9300 | C21—C22 | 1.382 (3) |
C4—C5 | 1.379 (5) | C21—H21A | 0.9300 |
C4—H4A | 0.9300 | C22—C23 | 1.384 (3) |
C5—C6 | 1.383 (4) | C22—H22A | 0.9300 |
C5—H5A | 0.9300 | C23—C24 | 1.377 (3) |
C6—C7 | 1.393 (3) | C23—C26 | 1.488 (3) |
C6—H6A | 0.9300 | C24—C25 | 1.384 (3) |
C7—C8 | 1.485 (3) | C24—H24A | 0.9300 |
C8—C9 | 1.542 (3) | C25—H25A | 0.9300 |
C9—C10 | 1.581 (3) | C27—C28 | 1.528 (4) |
C10—C18 | 1.540 (3) | C27—H27A | 0.9800 |
C10—C19 | 1.544 (3) | C28—H28A | 0.9700 |
C10—C11 | 1.545 (3) | C28—H28B | 0.9700 |
C11—C12 | 1.476 (3) | C29—H29A | 0.9700 |
C12—C17 | 1.386 (3) | C29—H29B | 0.9700 |
C12—C13 | 1.398 (3) | ||
C29—S1—C28 | 91.51 (12) | C12—C17—C16 | 119.6 (2) |
C9—N1—C29 | 118.30 (18) | C12—C17—C18 | 111.7 (2) |
C9—N1—C27 | 110.40 (16) | C16—C17—C18 | 128.7 (2) |
C29—N1—C27 | 113.82 (18) | C17—C18—C10 | 104.01 (17) |
O1—C1—C2 | 127.1 (2) | C17—C18—H18A | 111.0 |
O1—C1—C9 | 125.3 (2) | C10—C18—H18A | 111.0 |
C2—C1—C9 | 107.46 (18) | C17—C18—H18B | 111.0 |
C7—C2—C3 | 120.8 (2) | C10—C18—H18B | 111.0 |
C7—C2—C1 | 110.33 (19) | H18A—C18—H18B | 109.0 |
C3—C2—C1 | 128.8 (2) | C20—C19—C27 | 116.21 (17) |
C4—C3—C2 | 117.6 (3) | C20—C19—C10 | 116.84 (18) |
C4—C3—H3A | 121.2 | C27—C19—C10 | 103.12 (16) |
C2—C3—H3A | 121.2 | C20—C19—H19A | 106.6 |
C3—C4—C5 | 121.9 (3) | C27—C19—H19A | 106.6 |
C3—C4—H4A | 119.0 | C10—C19—H19A | 106.6 |
C5—C4—H4A | 119.0 | C21—C20—C25 | 117.3 (2) |
C4—C5—C6 | 121.2 (3) | C21—C20—C19 | 119.05 (18) |
C4—C5—H5A | 119.4 | C25—C20—C19 | 123.65 (19) |
C6—C5—H5A | 119.4 | C22—C21—C20 | 121.9 (2) |
C5—C6—C7 | 117.6 (3) | C22—C21—H21A | 119.0 |
C5—C6—H6A | 121.2 | C20—C21—H21A | 119.0 |
C7—C6—H6A | 121.2 | C21—C22—C23 | 119.6 (2) |
C6—C7—C2 | 120.8 (2) | C21—C22—H22A | 120.2 |
C6—C7—C8 | 129.5 (2) | C23—C22—H22A | 120.2 |
C2—C7—C8 | 109.64 (19) | C24—C23—C22 | 119.6 (2) |
O2—C8—C7 | 126.4 (2) | C24—C23—C26 | 119.7 (2) |
O2—C8—C9 | 126.0 (2) | C22—C23—C26 | 120.6 (2) |
C7—C8—C9 | 107.47 (18) | C23—C24—C25 | 120.3 (2) |
N1—C9—C8 | 113.35 (17) | C23—C24—H24A | 119.9 |
N1—C9—C1 | 116.89 (18) | C25—C24—H24A | 119.9 |
C8—C9—C1 | 101.91 (16) | C24—C25—C20 | 121.2 (2) |
N1—C9—C10 | 100.82 (15) | C24—C25—H25A | 119.4 |
C8—C9—C10 | 113.59 (17) | C20—C25—H25A | 119.4 |
C1—C9—C10 | 110.80 (16) | F3—C26—F1 | 104.7 (3) |
C18—C10—C19 | 116.52 (16) | F3—C26—F2 | 106.1 (2) |
C18—C10—C11 | 104.02 (17) | F1—C26—F2 | 104.9 (3) |
C19—C10—C11 | 115.45 (17) | F3—C26—C23 | 113.3 (3) |
C18—C10—C9 | 110.58 (16) | F1—C26—C23 | 113.7 (2) |
C19—C10—C9 | 99.45 (16) | F2—C26—C23 | 113.3 (2) |
C11—C10—C9 | 110.96 (16) | N1—C27—C28 | 108.28 (19) |
O3—C11—C12 | 128.1 (2) | N1—C27—C19 | 104.79 (16) |
O3—C11—C10 | 125.1 (2) | C28—C27—C19 | 115.4 (2) |
C12—C11—C10 | 106.86 (18) | N1—C27—H27A | 109.4 |
C17—C12—C13 | 121.9 (3) | C28—C27—H27A | 109.4 |
C17—C12—C11 | 109.28 (19) | C19—C27—H27A | 109.4 |
C13—C12—C11 | 128.8 (2) | C27—C28—S1 | 104.62 (18) |
C14—C13—C12 | 117.9 (3) | C27—C28—H28A | 110.8 |
C14—C13—H13A | 121.0 | S1—C28—H28A | 110.8 |
C12—C13—H13A | 121.0 | C27—C28—H28B | 110.8 |
C13—C14—C15 | 120.8 (3) | S1—C28—H28B | 110.8 |
C13—C14—H14A | 119.6 | H28A—C28—H28B | 108.9 |
C15—C14—H14A | 119.6 | N1—C29—S1 | 108.05 (16) |
C16—C15—C14 | 121.4 (3) | N1—C29—H29A | 110.1 |
C16—C15—H15A | 119.3 | S1—C29—H29A | 110.1 |
C14—C15—H15A | 119.3 | N1—C29—H29B | 110.1 |
C15—C16—C17 | 118.4 (3) | S1—C29—H29B | 110.1 |
C15—C16—H16A | 120.8 | H29A—C29—H29B | 108.4 |
C17—C16—H16A | 120.8 | ||
O1—C1—C2—C7 | 166.6 (2) | C17—C12—C13—C14 | 0.0 (4) |
C9—C1—C2—C7 | −10.8 (2) | C11—C12—C13—C14 | 178.4 (2) |
O1—C1—C2—C3 | −9.7 (4) | C12—C13—C14—C15 | −0.3 (4) |
C9—C1—C2—C3 | 173.0 (2) | C13—C14—C15—C16 | 0.0 (4) |
C7—C2—C3—C4 | 0.6 (4) | C14—C15—C16—C17 | 0.6 (4) |
C1—C2—C3—C4 | 176.5 (2) | C13—C12—C17—C16 | 0.6 (3) |
C2—C3—C4—C5 | 0.0 (4) | C11—C12—C17—C16 | −178.1 (2) |
C3—C4—C5—C6 | 0.0 (5) | C13—C12—C17—C18 | −178.3 (2) |
C4—C5—C6—C7 | −0.5 (5) | C11—C12—C17—C18 | 3.0 (2) |
C5—C6—C7—C2 | 1.1 (4) | C15—C16—C17—C12 | −0.9 (3) |
C5—C6—C7—C8 | −175.6 (3) | C15—C16—C17—C18 | 177.8 (2) |
C3—C2—C7—C6 | −1.2 (4) | C12—C17—C18—C10 | −14.8 (2) |
C1—C2—C7—C6 | −177.8 (2) | C16—C17—C18—C10 | 166.4 (2) |
C3—C2—C7—C8 | 176.1 (2) | C19—C10—C18—C17 | 148.04 (17) |
C1—C2—C7—C8 | −0.5 (3) | C11—C10—C18—C17 | 19.8 (2) |
C6—C7—C8—O2 | 13.2 (4) | C9—C10—C18—C17 | −99.42 (18) |
C2—C7—C8—O2 | −163.8 (2) | C18—C10—C19—C20 | −50.9 (2) |
C6—C7—C8—C9 | −171.4 (3) | C11—C10—C19—C20 | 71.6 (2) |
C2—C7—C8—C9 | 11.7 (2) | C9—C10—C19—C20 | −169.66 (17) |
C29—N1—C9—C8 | 72.0 (3) | C18—C10—C19—C27 | 77.9 (2) |
C27—N1—C9—C8 | −154.43 (18) | C11—C10—C19—C27 | −159.62 (17) |
C29—N1—C9—C1 | −46.1 (3) | C9—C10—C19—C27 | −40.89 (18) |
C27—N1—C9—C1 | 87.5 (2) | C27—C19—C20—C21 | 157.7 (2) |
C29—N1—C9—C10 | −166.28 (19) | C10—C19—C20—C21 | −80.1 (3) |
C27—N1—C9—C10 | −32.7 (2) | C27—C19—C20—C25 | −20.1 (3) |
O2—C8—C9—N1 | 32.0 (3) | C10—C19—C20—C25 | 102.1 (3) |
C7—C8—C9—N1 | −143.50 (18) | C25—C20—C21—C22 | −0.1 (4) |
O2—C8—C9—C1 | 158.5 (2) | C19—C20—C21—C22 | −178.0 (2) |
C7—C8—C9—C1 | −17.0 (2) | C20—C21—C22—C23 | 1.0 (4) |
O2—C8—C9—C10 | −82.3 (3) | C21—C22—C23—C24 | −0.7 (4) |
C7—C8—C9—C10 | 102.2 (2) | C21—C22—C23—C26 | 177.9 (3) |
O1—C1—C9—N1 | −36.5 (3) | C22—C23—C24—C25 | −0.6 (4) |
C2—C1—C9—N1 | 140.89 (18) | C26—C23—C24—C25 | −179.2 (3) |
O1—C1—C9—C8 | −160.6 (2) | C23—C24—C25—C20 | 1.6 (4) |
C2—C1—C9—C8 | 16.8 (2) | C21—C20—C25—C24 | −1.2 (4) |
O1—C1—C9—C10 | 78.2 (3) | C19—C20—C25—C24 | 176.6 (2) |
C2—C1—C9—C10 | −104.41 (19) | C24—C23—C26—F3 | 76.1 (3) |
N1—C9—C10—C18 | −78.39 (19) | C22—C23—C26—F3 | −102.5 (3) |
C8—C9—C10—C18 | 43.2 (2) | C24—C23—C26—F1 | −164.5 (3) |
C1—C9—C10—C18 | 157.20 (17) | C22—C23—C26—F1 | 16.9 (4) |
N1—C9—C10—C19 | 44.70 (18) | C24—C23—C26—F2 | −44.9 (4) |
C8—C9—C10—C19 | 166.29 (16) | C22—C23—C26—F2 | 136.5 (3) |
C1—C9—C10—C19 | −79.71 (19) | C9—N1—C27—C28 | −116.7 (2) |
N1—C9—C10—C11 | 166.72 (17) | C29—N1—C27—C28 | 19.2 (3) |
C8—C9—C10—C11 | −71.7 (2) | C9—N1—C27—C19 | 7.0 (2) |
C1—C9—C10—C11 | 42.3 (2) | C29—N1—C27—C19 | 142.8 (2) |
C18—C10—C11—O3 | 161.5 (2) | C20—C19—C27—N1 | 151.74 (19) |
C19—C10—C11—O3 | 32.5 (3) | C10—C19—C27—N1 | 22.6 (2) |
C9—C10—C11—O3 | −79.6 (3) | C20—C19—C27—C28 | −89.3 (3) |
C18—C10—C11—C12 | −18.8 (2) | C10—C19—C27—C28 | 141.6 (2) |
C19—C10—C11—C12 | −147.68 (18) | N1—C27—C28—S1 | −35.5 (2) |
C9—C10—C11—C12 | 100.17 (19) | C19—C27—C28—S1 | −152.48 (17) |
O3—C11—C12—C17 | −170.0 (2) | C29—S1—C28—C27 | 34.0 (2) |
C10—C11—C12—C17 | 10.3 (2) | C9—N1—C29—S1 | 138.59 (17) |
O3—C11—C12—C13 | 11.5 (4) | C27—N1—C29—S1 | 6.5 (3) |
C10—C11—C12—C13 | −168.3 (2) | C28—S1—C29—N1 | −24.1 (2) |
D—H···A | D—H | H···A | D···A | D—H···A |
C3—H3A···O1i | 0.93 | 2.57 | 3.227 (3) | 128 |
C18—H18A···O2 | 0.97 | 2.47 | 3.091 (3) | 122 |
C19—H19A···O1 | 0.98 | 2.50 | 3.145 (3) | 123 |
Symmetry code: (i) −x+2, −y, −z+1. |
Experimental details
Crystal data | |
Chemical formula | C29H20F3NO3S |
Mr | 519.52 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 296 |
a, b, c (Å) | 8.5894 (9), 12.3144 (13), 12.6109 (15) |
α, β, γ (°) | 68.181 (1), 87.589 (2), 74.960 (2) |
V (Å3) | 1193.7 (2) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.19 |
Crystal size (mm) | 0.23 × 0.22 × 0.09 |
Data collection | |
Diffractometer | Bruker SMART APEXII DUO CCD area-detector |
Absorption correction | Multi-scan (SADABS; Bruker, 2009) |
Tmin, Tmax | 0.957, 0.983 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 25475, 6922, 4508 |
Rint | 0.038 |
(sin θ/λ)max (Å−1) | 0.705 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.063, 0.216, 1.05 |
No. of reflections | 6922 |
No. of parameters | 334 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.73, −0.69 |
Computer programs: APEX2 (Bruker, 2009), SAINT (Bruker, 2009), SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
C3—H3A···O1i | 0.9300 | 2.5700 | 3.227 (3) | 128.00 |
C18—H18A···O2 | 0.9700 | 2.4700 | 3.091 (3) | 122.00 |
C19—H19A···O1 | 0.9800 | 2.5000 | 3.145 (3) | 123.00 |
Symmetry code: (i) −x+2, −y, −z+1. |
Acknowledgements
The authors thank Pharmacogenetic and Novel Therapeutic Research, Institute for Research in Molecular Medicine, Universiti Sains Malysia (USM), Penang. This work was funded through Research Grant No. RUC (1001/PSK/8620012). HKF and CKQ also thank USM for the Research University Grant (No. 1001/PFIZIK/811160).
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
As part of our ongoing search for novel heterocyclic compounds with antitubercular activity (Wei, Ali, Choon et al., 2011a,b; Wei, Ali, Ismail et al., 2011; Wei, Ali, Yoon et al., 2011), our group has synthesized the title compound as described below.
The molecular structure is shown in Fig. 1. The thiazolidine (S1/N1/C27-C29) ring is twisted about the S1—C28 bond, with puckering parameters (Cremer & Pople, 1975) Q = 0.405 (3) Å and φ = 204.5 (4)°, thereby adopting a half-chair conformation. The pyrrolidine (N1/C9/C10/C19/C27) and two five-membered carbocyclic (C1/C2/C7-C9 and C10-C12/C17/C18) rings are in envelope conformations, puckering parameters (Cremer & Pople, 1975) Q = 0.458 (2) Å and φ = 65.6 (3)° with atom C10 at the flap; Q = 0.178 (3) Å and φ = 322.2 (8)° with atom C9 at the flap; and Q = 0.202 (3) Å and φ = 352.7 (8)° with atom C10 at the flap, respectively. Bond lengths (Allen et al., 1987) and angles are within normal ranges and are comparable to related structures (Kumar et al., 2010; Wei, Ali, Choon et al., 2011a,b; Wei, Ali, Ismail et al., 2011; Wei, Ali, Yoon et al., 2011). The trifluoromethyl-bound benzene (C20–C25) ring forms dihedral angles of 62.37 (14) and 87.40 (14)° with the other two benzene (C2–C7 and C12–C17) rings, respectively. The two benzene rings form a dihedral angle of 36.94 (15)°. The molecular structure is stabilized by intramolecular C18—H18A···O2 and C19—H19A···O1 hydrogen bonds (Table 1), which generate S(6) ring motifs (Fig. 1; Bernstein et al., 1995).
In the crystal (Fig. 2), molecules are linked into inversion dimers by pairs of intermolecular C3—H3A···O1 hydrogen bonds (Table 1), generating ten-membered R22(10) ring motifs (Bernstein et al., 1995).