metal-organic compounds
Aqua{tris[(1H-benzimidazol-2-yl-κN3)methyl]amine}zinc 5-(dimethylamino)naphthalene-1-sulfonate perchlorate 2.5-hydrate
aSchool of Chemical Engineering and Food Science, Xiangfan University, Xiangfan 441053, People's Republic of China
*Correspondence e-mail: blueice8250@yahoo.com.cn
In the title compound, [Zn(C24H21N7)(H2O)](C12H12NO3S)(ClO4)·2.5H2O, the ZnII ion is in a distorted trigonal–bipyramidal coordination geometry. In the crystal, N—H⋯O and O—H⋯O hydrogen bonds connect the components into a two-dimensional network parallel to (001). In addition, there are weak C—H⋯O hydrogen bonds.
Related literature
For the biological and biochemical applications of benzimidazole compounds, see: Sundberg et al. (1977); Santoro et al. (2000). For the properties of tris(1H-benzimidazol-2-ylmethyl)amine, see: Main (1992). For related structures, see: Tian et al. (2004); Wu et al. (2004); Li et al. (2005).
Experimental
Crystal data
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Refinement
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Data collection: SMART (Bruker, 2001); cell SAINT (Bruker, 2001); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: PLATON (Spek, 2009); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).
Supporting information
https://doi.org/10.1107/S1600536811047453/lh5361sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536811047453/lh5361Isup2.hkl
Zn(ClO4)2.6H2O (370 mg, 1 mmol) was dissolved in water (5 ml), dansyl acid (251 mg, 1 mmol) and NTB (407 mg, 1 mmol) were dissolved in ethanol (40 ml), then the two solutions were mixed and stirred at 333 k for 8 h. The pH of the mixture was maintained between 7–8 by addition of 1 mol.L-1 NaOH. The solution was filtered, yellow crystals suitable for X-ray diffraction studies were obtained after a week. Elemental analysis calculated: C 48.33, H 4.62, N 12.52%; found: C 48.66, H 4.49, N 12.84%.
All Hydrogen atoms were placed in calculated positions [C—H(methylene) = 0.97 Å, N—H(amine) = 0.86Å and C—H(aromatic) = 0.93 Å] and included in the
in a riding-motion approximation, with Uiso(H)=1.5Ueq(methyl C) and Uiso(H)=1.2Ueq(amine, methylene and aromatic C). Hydrogen atoms bonded to oxygen atoms were calculated and placed at their indicated positions in the difference maps and refined with O-H=0.82-0.83Å and Uiso(H)=1.5Ueq(O). The half occupancy water molecule is close to a twofold rotation axis.Imidazole (Im) and benzimidazole (Bzim) are common species in biological and biochemical structure and function (Sundberg et al.,1977; Santoro et al., 2000). Tris(1H-benzimidazol-2-ylmethyl)-amine (NTB) is a benzimidazole-rich ligand, which has the advantage that the basicity of the coordinating group approximates to that of histidine (pKb: histidine = 7.96 and benzimidazole = 8.47; Main, 1992). Several examples of NTB-metal compounds have been reported (Tian et al., 2004; Wu et al., 2004; Li et al., 2005), and the title compound, (I), is part of our effort in order to contribute to this research. Herein we report its crystal structure.
In (I) (Fig .1), the ZnII ion is coordinated by four benzimidazole (bzim) N atoms of the NTB ligand and one O atom of H2O ligand, forming a five-coordinated distorted bipyramidal geometry. One amino N atom (N1) and one O atom (O1) of the H2O ligand occupy the axial positions, the other three bzim-N atoms (N2, N4 and N6) are located in the equatorial plane. All bond lengths and bond angles are as expected. In the crystal, N—H···O and O—H···O hydrogen bonds connect the components into a two-dimensional network parallel to (001). In addition there are weak intermolecular C—H···O hydrogen bonds (Fig. 2).
For the biological and biochemical applications of benzimidazole compounds, see: Sundberg et al. (1977); Santoro et al. (2000). For the properties of tris(1H-benzimidazol-2-ylmethyl)amine, see: Main (1992). For related structures, see: Tian et al. (2004); Wu et al. (2004); Li et al. (2005).
Data collection: SMART (Bruker, 2001); cell
SAINT (Bruker, 2001); data reduction: SAINT (Bruker, 2001); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: PLATON (Spek, 2009); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).Fig. 1. The molecular structure of (I), with displacement ellipsoids drawn at the 10% probability level. Hydrogen atoms are omitted for clarity. | |
Fig. 2. The crystal packing showing the hydrogen bonds shown as dashed lines. |
[Zn(C24H21N7)(H2O)](C12H12NO3S)(ClO4)·2.5H2O | F(000) = 3672 |
Mr = 885.64 | Dx = 1.450 Mg m−3 |
Monoclinic, C2/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -C 2yc | Cell parameters from 7269 reflections |
a = 26.327 (2) Å | θ = 2.4–23.2° |
b = 12.4462 (10) Å | µ = 0.79 mm−1 |
c = 25.166 (2) Å | T = 298 K |
β = 100.242 (2)° | Block, yellow |
V = 8115.0 (11) Å3 | 0.30 × 0.20 × 0.10 mm |
Z = 8 |
Bruker SMART CCD diffractometer | 7146 independent reflections |
Radiation source: fine-focus sealed tube | 5127 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.079 |
φ and ω scans | θmax = 25.0°, θmin = 1.6° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −31→31 |
Tmin = 0.788, Tmax = 0.925 | k = −14→14 |
32018 measured reflections | l = −29→29 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.062 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.180 | H-atom parameters constrained |
S = 0.99 | w = 1/[σ2(Fo2) + (0.1174P)2] where P = (Fo2 + 2Fc2)/3 |
7146 reflections | (Δ/σ)max = 0.001 |
525 parameters | Δρmax = 0.96 e Å−3 |
21 restraints | Δρmin = −0.51 e Å−3 |
[Zn(C24H21N7)(H2O)](C12H12NO3S)(ClO4)·2.5H2O | V = 8115.0 (11) Å3 |
Mr = 885.64 | Z = 8 |
Monoclinic, C2/c | Mo Kα radiation |
a = 26.327 (2) Å | µ = 0.79 mm−1 |
b = 12.4462 (10) Å | T = 298 K |
c = 25.166 (2) Å | 0.30 × 0.20 × 0.10 mm |
β = 100.242 (2)° |
Bruker SMART CCD diffractometer | 7146 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | 5127 reflections with I > 2σ(I) |
Tmin = 0.788, Tmax = 0.925 | Rint = 0.079 |
32018 measured reflections |
R[F2 > 2σ(F2)] = 0.062 | 21 restraints |
wR(F2) = 0.180 | H-atom parameters constrained |
S = 0.99 | Δρmax = 0.96 e Å−3 |
7146 reflections | Δρmin = −0.51 e Å−3 |
525 parameters |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
Zn1 | 0.368534 (15) | 0.67112 (3) | 0.425319 (17) | 0.04460 (18) | |
C1 | 0.40414 (18) | 0.8930 (3) | 0.3887 (2) | 0.0747 (14) | |
H1A | 0.4331 | 0.9415 | 0.3893 | 0.090* | |
H1B | 0.3726 | 0.9338 | 0.3781 | 0.090* | |
C2 | 0.40665 (16) | 0.8048 (4) | 0.3486 (2) | 0.0657 (13) | |
C3 | 0.39395 (15) | 0.6491 (4) | 0.30729 (18) | 0.0640 (13) | |
C4 | 0.38204 (17) | 0.5451 (4) | 0.29224 (18) | 0.0680 (13) | |
H4 | 0.3674 | 0.4991 | 0.3144 | 0.082* | |
C5 | 0.3924 (2) | 0.5108 (6) | 0.2435 (2) | 0.0934 (18) | |
H5 | 0.3852 | 0.4406 | 0.2318 | 0.112* | |
C6 | 0.4145 (3) | 0.5854 (9) | 0.2110 (3) | 0.124 (3) | |
H6 | 0.4207 | 0.5615 | 0.1777 | 0.149* | |
C7 | 0.4267 (3) | 0.6842 (7) | 0.2244 (3) | 0.103 (2) | |
H7 | 0.4419 | 0.7295 | 0.2024 | 0.124* | |
C8 | 0.41569 (18) | 0.7176 (6) | 0.2735 (2) | 0.0799 (15) | |
C9 | 0.37145 (17) | 0.8994 (3) | 0.4741 (2) | 0.0653 (12) | |
H9A | 0.3721 | 0.9766 | 0.4688 | 0.078* | |
H9B | 0.3834 | 0.8847 | 0.5121 | 0.078* | |
C10 | 0.31871 (16) | 0.8594 (3) | 0.45783 (18) | 0.0577 (11) | |
C11 | 0.25419 (15) | 0.7558 (3) | 0.42260 (16) | 0.0498 (9) | |
C12 | 0.22274 (16) | 0.6785 (3) | 0.39532 (19) | 0.0618 (11) | |
H12 | 0.2364 | 0.6171 | 0.3822 | 0.074* | |
C13 | 0.16983 (18) | 0.6951 (4) | 0.3880 (2) | 0.0768 (14) | |
H13 | 0.1475 | 0.6439 | 0.3698 | 0.092* | |
C14 | 0.14966 (19) | 0.7880 (5) | 0.4078 (2) | 0.0857 (15) | |
H14 | 0.1141 | 0.7973 | 0.4021 | 0.103* | |
C15 | 0.18053 (19) | 0.8651 (4) | 0.4350 (2) | 0.0770 (14) | |
H15 | 0.1669 | 0.9263 | 0.4482 | 0.092* | |
C16 | 0.23340 (17) | 0.8479 (3) | 0.44196 (19) | 0.0593 (11) | |
C17 | 0.45856 (16) | 0.8302 (3) | 0.4718 (2) | 0.0640 (12) | |
H17A | 0.4686 | 0.8894 | 0.4966 | 0.077* | |
H17B | 0.4825 | 0.8269 | 0.4467 | 0.077* | |
C18 | 0.45987 (14) | 0.7271 (3) | 0.50249 (16) | 0.0478 (9) | |
C19 | 0.44282 (13) | 0.5649 (3) | 0.52476 (14) | 0.0407 (8) | |
C20 | 0.42248 (15) | 0.4624 (3) | 0.52827 (16) | 0.0468 (9) | |
H20 | 0.3933 | 0.4392 | 0.5046 | 0.056* | |
C21 | 0.44819 (15) | 0.3965 (3) | 0.56908 (16) | 0.0535 (10) | |
H21 | 0.4359 | 0.3274 | 0.5729 | 0.064* | |
C22 | 0.49164 (16) | 0.4313 (4) | 0.60412 (18) | 0.0627 (11) | |
H22 | 0.5076 | 0.3845 | 0.6307 | 0.075* | |
C23 | 0.51212 (16) | 0.5323 (4) | 0.60114 (18) | 0.0594 (11) | |
H23 | 0.5412 | 0.5552 | 0.6251 | 0.071* | |
C24 | 0.48661 (13) | 0.5985 (3) | 0.55993 (15) | 0.0459 (9) | |
C25 | 0.2954 (2) | −0.0119 (4) | 0.2644 (2) | 0.0736 (14) | |
C26 | 0.3384 (3) | 0.0095 (4) | 0.2441 (2) | 0.0859 (16) | |
H26 | 0.3434 | −0.0244 | 0.2125 | 0.103* | |
C27 | 0.3762 (2) | 0.0826 (5) | 0.2699 (2) | 0.0878 (15) | |
H27 | 0.4053 | 0.0962 | 0.2547 | 0.105* | |
C28 | 0.37068 (18) | 0.1332 (4) | 0.31654 (19) | 0.0664 (12) | |
H28 | 0.3964 | 0.1787 | 0.3340 | 0.080* | |
C29 | 0.32507 (15) | 0.1158 (3) | 0.33825 (16) | 0.0526 (10) | |
C30 | 0.31580 (15) | 0.1641 (3) | 0.38677 (17) | 0.0504 (10) | |
C31 | 0.26929 (18) | 0.1555 (3) | 0.4027 (2) | 0.0655 (12) | |
H31 | 0.2639 | 0.1882 | 0.4345 | 0.079* | |
C32 | 0.22930 (18) | 0.0971 (4) | 0.3709 (2) | 0.0803 (15) | |
H32 | 0.1968 | 0.0953 | 0.3804 | 0.096* | |
C33 | 0.23784 (18) | 0.0439 (4) | 0.3270 (2) | 0.0744 (14) | |
H33 | 0.2113 | 0.0037 | 0.3072 | 0.089* | |
C34 | 0.28571 (18) | 0.0474 (3) | 0.31021 (17) | 0.0591 (11) | |
C35 | 0.2530 (3) | −0.1812 (5) | 0.2739 (3) | 0.128 (3) | |
H35A | 0.2784 | −0.2337 | 0.2689 | 0.192* | |
H35B | 0.2191 | −0.2115 | 0.2637 | 0.192* | |
H35C | 0.2582 | −0.1601 | 0.3112 | 0.192* | |
C36 | 0.2610 (3) | −0.1220 (6) | 0.1863 (3) | 0.142 (3) | |
H36A | 0.2666 | −0.0605 | 0.1650 | 0.212* | |
H36B | 0.2294 | −0.1567 | 0.1704 | 0.212* | |
H36C | 0.2892 | −0.1713 | 0.1874 | 0.212* | |
N1 | 0.40553 (13) | 0.8473 (2) | 0.44208 (15) | 0.0571 (9) | |
N2 | 0.38907 (12) | 0.7073 (3) | 0.35422 (14) | 0.0554 (9) | |
N3 | 0.42293 (16) | 0.8138 (4) | 0.30098 (19) | 0.0860 (14) | |
H3 | 0.4359 | 0.8708 | 0.2895 | 0.103* | |
N4 | 0.30780 (12) | 0.7648 (2) | 0.43334 (13) | 0.0518 (8) | |
N5 | 0.27473 (13) | 0.9102 (3) | 0.46409 (15) | 0.0638 (9) | |
H5A | 0.2730 | 0.9715 | 0.4794 | 0.077* | |
N6 | 0.42641 (11) | 0.6488 (2) | 0.48872 (12) | 0.0413 (7) | |
N7 | 0.49602 (12) | 0.7020 (3) | 0.54441 (14) | 0.0547 (8) | |
H7A | 0.5209 | 0.7428 | 0.5593 | 0.066* | |
N8 | 0.25788 (19) | −0.0879 (3) | 0.24062 (17) | 0.0942 (15) | |
O1 | 0.33343 (10) | 0.52475 (19) | 0.41288 (11) | 0.0534 (7) | |
H1C | 0.3493 | 0.4753 | 0.4021 | 0.080* | |
H1D | 0.3093 | 0.5013 | 0.4258 | 0.080* | |
O2 | 0.37520 (12) | 0.3336 (2) | 0.39794 (13) | 0.0652 (8) | |
O3 | 0.34350 (12) | 0.2669 (2) | 0.47625 (12) | 0.0702 (8) | |
O4 | 0.40978 (12) | 0.1702 (2) | 0.43981 (15) | 0.0760 (9) | |
Cl1 | 0.45345 (7) | 0.03484 (16) | 0.63565 (10) | 0.1208 (6) | |
O5 | 0.4653 (2) | 0.1378 (4) | 0.6203 (3) | 0.163 (2) | |
O6 | 0.4032 (2) | 0.0348 (6) | 0.6411 (3) | 0.205 (3) | |
O7 | 0.4865 (3) | 0.0216 (7) | 0.6843 (3) | 0.296 (6) | |
O8 | 0.4623 (4) | −0.0368 (7) | 0.6007 (4) | 0.289 (6) | |
O9 | 0.26915 (15) | 0.4297 (3) | 0.47110 (14) | 0.0938 (11) | |
H9C | 0.2412 | 0.3977 | 0.4653 | 0.141* | |
H9D | 0.2921 | 0.3842 | 0.4718 | 0.141* | |
O10 | 0.1726 (2) | 0.3805 (6) | 0.4467 (3) | 0.192 (3) | |
H10A | 0.1695 | 0.3348 | 0.4699 | 0.288* | |
H10B | 0.1445 | 0.3977 | 0.4279 | 0.288* | |
S1 | 0.36503 (4) | 0.23897 (8) | 0.42816 (4) | 0.0558 (3) | |
O11 | 0.5051 (9) | 0.2749 (12) | 0.2823 (7) | 0.254 (10) | 0.50 |
H11A | 0.5000 | 0.2489 | 0.2500 | 0.380* | |
H11B | 0.4937 | 0.2463 | 0.3071 | 0.380* | 0.50 |
U11 | U22 | U33 | U12 | U13 | U23 | |
Zn1 | 0.0437 (3) | 0.0331 (3) | 0.0559 (3) | 0.00009 (17) | 0.0058 (2) | 0.00499 (19) |
C1 | 0.061 (3) | 0.048 (3) | 0.112 (4) | −0.004 (2) | 0.005 (3) | 0.033 (3) |
C2 | 0.050 (2) | 0.063 (3) | 0.082 (3) | 0.002 (2) | 0.007 (2) | 0.032 (3) |
C3 | 0.041 (2) | 0.099 (4) | 0.051 (3) | 0.010 (2) | 0.006 (2) | 0.023 (3) |
C4 | 0.054 (3) | 0.093 (4) | 0.053 (3) | 0.007 (2) | 0.000 (2) | −0.001 (3) |
C5 | 0.067 (3) | 0.142 (5) | 0.070 (4) | 0.010 (3) | 0.009 (3) | −0.010 (4) |
C6 | 0.080 (4) | 0.230 (10) | 0.065 (4) | 0.003 (6) | 0.020 (3) | −0.001 (5) |
C7 | 0.087 (4) | 0.152 (7) | 0.077 (4) | −0.010 (4) | 0.032 (3) | 0.021 (4) |
C8 | 0.054 (3) | 0.111 (5) | 0.074 (4) | 0.002 (3) | 0.007 (3) | 0.028 (3) |
C9 | 0.069 (3) | 0.031 (2) | 0.092 (3) | −0.0013 (19) | 0.004 (2) | −0.007 (2) |
C10 | 0.065 (3) | 0.034 (2) | 0.075 (3) | 0.0037 (19) | 0.013 (2) | 0.004 (2) |
C11 | 0.049 (2) | 0.045 (2) | 0.056 (2) | 0.0040 (17) | 0.0124 (18) | 0.0076 (18) |
C12 | 0.053 (2) | 0.054 (3) | 0.078 (3) | 0.0000 (19) | 0.008 (2) | −0.004 (2) |
C13 | 0.058 (3) | 0.086 (4) | 0.087 (4) | −0.008 (2) | 0.012 (3) | 0.000 (3) |
C14 | 0.050 (3) | 0.104 (4) | 0.106 (4) | 0.008 (3) | 0.022 (3) | 0.006 (4) |
C15 | 0.065 (3) | 0.069 (3) | 0.103 (4) | 0.015 (3) | 0.031 (3) | −0.002 (3) |
C16 | 0.060 (3) | 0.049 (2) | 0.073 (3) | 0.0052 (19) | 0.023 (2) | 0.005 (2) |
C17 | 0.050 (2) | 0.045 (2) | 0.094 (3) | −0.0103 (18) | 0.004 (2) | 0.009 (2) |
C18 | 0.040 (2) | 0.040 (2) | 0.063 (3) | −0.0027 (16) | 0.0072 (18) | −0.0046 (18) |
C19 | 0.0393 (18) | 0.0397 (19) | 0.044 (2) | 0.0057 (15) | 0.0108 (16) | −0.0011 (16) |
C20 | 0.047 (2) | 0.041 (2) | 0.053 (2) | −0.0013 (16) | 0.0093 (18) | −0.0009 (17) |
C21 | 0.059 (2) | 0.044 (2) | 0.059 (3) | 0.0096 (18) | 0.016 (2) | 0.0112 (19) |
C22 | 0.052 (2) | 0.070 (3) | 0.065 (3) | 0.016 (2) | 0.008 (2) | 0.021 (2) |
C23 | 0.044 (2) | 0.069 (3) | 0.061 (3) | 0.0081 (19) | −0.0021 (19) | 0.006 (2) |
C24 | 0.0383 (19) | 0.048 (2) | 0.052 (2) | 0.0010 (16) | 0.0094 (17) | −0.0071 (18) |
C25 | 0.095 (4) | 0.050 (3) | 0.067 (3) | 0.000 (3) | −0.011 (3) | 0.006 (2) |
C26 | 0.117 (5) | 0.070 (3) | 0.067 (3) | 0.007 (3) | 0.008 (3) | −0.015 (3) |
C27 | 0.094 (4) | 0.085 (4) | 0.088 (4) | 0.001 (3) | 0.028 (3) | −0.004 (3) |
C28 | 0.070 (3) | 0.053 (2) | 0.075 (3) | −0.005 (2) | 0.010 (2) | −0.005 (2) |
C29 | 0.058 (2) | 0.037 (2) | 0.059 (3) | −0.0003 (17) | −0.002 (2) | 0.0085 (18) |
C30 | 0.050 (2) | 0.034 (2) | 0.064 (3) | 0.0002 (16) | 0.0020 (19) | 0.0069 (18) |
C31 | 0.066 (3) | 0.059 (3) | 0.070 (3) | −0.011 (2) | 0.009 (2) | 0.003 (2) |
C32 | 0.053 (3) | 0.087 (4) | 0.095 (4) | −0.017 (3) | −0.001 (3) | 0.010 (3) |
C33 | 0.059 (3) | 0.071 (3) | 0.083 (4) | −0.019 (2) | −0.014 (3) | 0.000 (3) |
C34 | 0.069 (3) | 0.046 (2) | 0.054 (3) | −0.0046 (19) | −0.012 (2) | 0.004 (2) |
C35 | 0.177 (7) | 0.070 (4) | 0.115 (5) | −0.042 (4) | −0.035 (5) | 0.012 (4) |
C36 | 0.215 (9) | 0.098 (5) | 0.092 (5) | −0.017 (5) | −0.030 (5) | −0.035 (4) |
N1 | 0.0526 (19) | 0.0345 (17) | 0.083 (3) | 0.0009 (14) | 0.0096 (18) | 0.0141 (16) |
N2 | 0.0480 (18) | 0.058 (2) | 0.060 (2) | 0.0033 (15) | 0.0080 (16) | 0.0203 (17) |
N3 | 0.072 (3) | 0.103 (4) | 0.086 (3) | −0.005 (2) | 0.021 (2) | 0.048 (3) |
N4 | 0.0472 (18) | 0.0351 (17) | 0.072 (2) | 0.0036 (14) | 0.0066 (16) | 0.0016 (15) |
N5 | 0.067 (2) | 0.0442 (19) | 0.082 (3) | 0.0065 (17) | 0.018 (2) | −0.0101 (18) |
N6 | 0.0400 (16) | 0.0330 (15) | 0.0501 (18) | −0.0022 (12) | 0.0054 (14) | 0.0021 (13) |
N7 | 0.0394 (17) | 0.0464 (19) | 0.075 (2) | −0.0033 (14) | 0.0022 (17) | −0.0067 (17) |
N8 | 0.128 (4) | 0.066 (3) | 0.072 (3) | −0.015 (3) | −0.030 (3) | −0.010 (2) |
O1 | 0.0514 (15) | 0.0389 (14) | 0.0686 (18) | −0.0043 (11) | 0.0076 (13) | 0.0018 (12) |
O2 | 0.076 (2) | 0.0407 (16) | 0.080 (2) | −0.0132 (13) | 0.0163 (17) | −0.0001 (14) |
O3 | 0.087 (2) | 0.0583 (19) | 0.0651 (19) | −0.0154 (16) | 0.0136 (17) | −0.0074 (15) |
O4 | 0.0563 (17) | 0.0536 (18) | 0.106 (2) | −0.0028 (13) | −0.0171 (17) | −0.0031 (16) |
Cl1 | 0.0852 (11) | 0.1234 (15) | 0.1551 (17) | −0.0241 (9) | 0.0248 (12) | 0.0337 (13) |
O5 | 0.158 (5) | 0.146 (4) | 0.203 (6) | −0.020 (4) | 0.081 (4) | 0.062 (4) |
O6 | 0.126 (5) | 0.250 (8) | 0.255 (7) | −0.067 (5) | 0.081 (5) | 0.008 (6) |
O7 | 0.244 (9) | 0.271 (10) | 0.299 (10) | −0.114 (7) | −0.154 (8) | 0.169 (8) |
O8 | 0.322 (13) | 0.240 (10) | 0.294 (11) | 0.017 (8) | 0.025 (10) | −0.150 (9) |
O9 | 0.123 (3) | 0.064 (2) | 0.105 (3) | −0.008 (2) | 0.047 (2) | −0.0104 (19) |
O10 | 0.106 (4) | 0.253 (7) | 0.229 (6) | 0.007 (4) | 0.060 (4) | 0.135 (6) |
S1 | 0.0561 (6) | 0.0382 (5) | 0.0695 (7) | −0.0089 (4) | 0.0012 (5) | −0.0028 (5) |
O11 | 0.217 (15) | 0.153 (11) | 0.39 (3) | 0.016 (13) | 0.04 (3) | −0.078 (12) |
Zn1—N2 | 2.010 (3) | C21—H21 | 0.9300 |
Zn1—N4 | 2.018 (3) | C22—C23 | 1.375 (6) |
Zn1—N6 | 2.020 (3) | C22—H22 | 0.9300 |
Zn1—O1 | 2.042 (2) | C23—C24 | 1.399 (5) |
Zn1—N1 | 2.406 (3) | C23—H23 | 0.9300 |
C1—N1 | 1.454 (6) | C24—N7 | 1.381 (5) |
C1—C2 | 1.499 (7) | C25—C26 | 1.350 (8) |
C1—H1A | 0.9700 | C25—N8 | 1.420 (6) |
C1—H1B | 0.9700 | C25—C34 | 1.430 (7) |
C2—N2 | 1.315 (5) | C26—C27 | 1.418 (8) |
C2—N3 | 1.348 (6) | C26—H26 | 0.9300 |
C3—C4 | 1.369 (7) | C27—C28 | 1.363 (7) |
C3—C8 | 1.397 (7) | C27—H27 | 0.9300 |
C3—N2 | 1.411 (6) | C28—C29 | 1.422 (6) |
C4—C5 | 1.372 (7) | C28—H28 | 0.9300 |
C4—H4 | 0.9300 | C29—C30 | 1.421 (6) |
C5—C6 | 1.429 (10) | C29—C34 | 1.427 (6) |
C5—H5 | 0.9300 | C30—C31 | 1.358 (6) |
C6—C7 | 1.300 (10) | C30—S1 | 1.775 (4) |
C6—H6 | 0.9300 | C31—C32 | 1.406 (6) |
C7—C8 | 1.382 (8) | C31—H31 | 0.9300 |
C7—H7 | 0.9300 | C32—C33 | 1.340 (7) |
C8—N3 | 1.379 (7) | C32—H32 | 0.9300 |
C9—N1 | 1.460 (5) | C33—C34 | 1.400 (7) |
C9—C10 | 1.463 (6) | C33—H33 | 0.9300 |
C9—H9A | 0.9700 | C35—N8 | 1.451 (7) |
C9—H9B | 0.9700 | C35—H35A | 0.9600 |
C10—N4 | 1.337 (5) | C35—H35B | 0.9600 |
C10—N5 | 1.353 (5) | C35—H35C | 0.9600 |
C11—C12 | 1.371 (6) | C36—N8 | 1.448 (7) |
C11—N4 | 1.393 (5) | C36—H36A | 0.9600 |
C11—C16 | 1.395 (5) | C36—H36B | 0.9600 |
C12—C13 | 1.388 (6) | C36—H36C | 0.9600 |
C12—H12 | 0.9300 | N3—H3 | 0.8600 |
C13—C14 | 1.400 (7) | N5—H5A | 0.8600 |
C13—H13 | 0.9300 | N7—H7A | 0.8600 |
C14—C15 | 1.361 (8) | O1—H1C | 0.8168 |
C14—H14 | 0.9300 | O1—H1D | 0.8171 |
C15—C16 | 1.388 (6) | O2—S1 | 1.452 (3) |
C15—H15 | 0.9300 | O3—S1 | 1.467 (3) |
C16—N5 | 1.371 (5) | O4—S1 | 1.444 (3) |
C17—N1 | 1.478 (5) | Cl1—O8 | 1.303 (7) |
C17—C18 | 1.494 (5) | Cl1—O6 | 1.353 (5) |
C17—H17A | 0.9700 | Cl1—O7 | 1.380 (6) |
C17—H17B | 0.9700 | Cl1—O5 | 1.390 (5) |
C18—N6 | 1.319 (4) | O9—H9C | 0.8265 |
C18—N7 | 1.327 (5) | O9—H9D | 0.8267 |
C19—C24 | 1.387 (5) | O10—H10A | 0.8292 |
C19—C20 | 1.393 (5) | O10—H10B | 0.8329 |
C19—N6 | 1.399 (4) | O11—H11B | 0.8200 |
C20—C21 | 1.392 (5) | O11—O11i | 1.60 (3) |
C20—H20 | 0.9300 | O11—H11A | 0.8634 |
C21—C22 | 1.384 (6) | O11—H11B | 0.8200 |
N2—Zn1—N4 | 107.63 (13) | C26—C25—N8 | 122.7 (5) |
N2—Zn1—N6 | 116.72 (12) | C26—C25—C34 | 119.0 (5) |
N4—Zn1—N6 | 120.03 (12) | N8—C25—C34 | 118.3 (5) |
N2—Zn1—O1 | 104.45 (13) | C25—C26—C27 | 121.5 (5) |
N4—Zn1—O1 | 100.71 (11) | C25—C26—H26 | 119.3 |
N6—Zn1—O1 | 104.80 (11) | C27—C26—H26 | 119.3 |
N2—Zn1—N1 | 77.72 (14) | C28—C27—C26 | 121.1 (5) |
N4—Zn1—N1 | 76.06 (12) | C28—C27—H27 | 119.4 |
N6—Zn1—N1 | 76.24 (11) | C26—C27—H27 | 119.4 |
O1—Zn1—N1 | 176.60 (11) | C27—C28—C29 | 119.2 (5) |
N1—C1—C2 | 109.7 (3) | C27—C28—H28 | 120.4 |
N1—C1—H1A | 109.7 | C29—C28—H28 | 120.4 |
C2—C1—H1A | 109.7 | C30—C29—C28 | 123.5 (4) |
N1—C1—H1B | 109.7 | C30—C29—C34 | 117.2 (4) |
C2—C1—H1B | 109.7 | C28—C29—C34 | 119.3 (4) |
H1A—C1—H1B | 108.2 | C31—C30—C29 | 121.4 (4) |
N2—C2—N3 | 110.2 (5) | C31—C30—S1 | 118.1 (3) |
N2—C2—C1 | 123.0 (4) | C29—C30—S1 | 120.5 (3) |
N3—C2—C1 | 126.6 (4) | C30—C31—C32 | 119.7 (5) |
C4—C3—C8 | 120.4 (5) | C30—C31—H31 | 120.1 |
C4—C3—N2 | 131.8 (4) | C32—C31—H31 | 120.1 |
C8—C3—N2 | 107.7 (5) | C33—C32—C31 | 120.4 (5) |
C3—C4—C5 | 118.0 (5) | C33—C32—H32 | 119.8 |
C3—C4—H4 | 121.0 | C31—C32—H32 | 119.8 |
C5—C4—H4 | 121.0 | C32—C33—C34 | 121.7 (4) |
C4—C5—C6 | 118.4 (7) | C32—C33—H33 | 119.1 |
C4—C5—H5 | 120.8 | C34—C33—H33 | 119.1 |
C6—C5—H5 | 120.8 | C33—C34—C29 | 118.9 (4) |
C7—C6—C5 | 125.0 (7) | C33—C34—C25 | 121.8 (4) |
C7—C6—H6 | 117.5 | C29—C34—C25 | 119.3 (4) |
C5—C6—H6 | 117.5 | N8—C35—H35A | 109.5 |
C6—C7—C8 | 115.8 (6) | N8—C35—H35B | 109.5 |
C6—C7—H7 | 122.1 | H35A—C35—H35B | 109.5 |
C8—C7—H7 | 122.1 | N8—C35—H35C | 109.5 |
N3—C8—C7 | 132.6 (6) | H35A—C35—H35C | 109.5 |
N3—C8—C3 | 105.0 (5) | H35B—C35—H35C | 109.5 |
C7—C8—C3 | 122.4 (7) | N8—C36—H36A | 109.5 |
N1—C9—C10 | 109.9 (3) | N8—C36—H36B | 109.5 |
N1—C9—H9A | 109.7 | H36A—C36—H36B | 109.5 |
C10—C9—H9A | 109.7 | N8—C36—H36C | 109.5 |
N1—C9—H9B | 109.7 | H36A—C36—H36C | 109.5 |
C10—C9—H9B | 109.7 | H36B—C36—H36C | 109.5 |
H9A—C9—H9B | 108.2 | C1—N1—C9 | 114.8 (3) |
N4—C10—N5 | 110.3 (4) | C1—N1—C17 | 113.0 (3) |
N4—C10—C9 | 122.9 (4) | C9—N1—C17 | 113.7 (4) |
N5—C10—C9 | 126.7 (4) | C1—N1—Zn1 | 104.6 (3) |
C12—C11—N4 | 130.9 (4) | C9—N1—Zn1 | 103.4 (2) |
C12—C11—C16 | 120.8 (4) | C17—N1—Zn1 | 105.9 (2) |
N4—C11—C16 | 108.2 (3) | C2—N2—C3 | 107.4 (4) |
C11—C12—C13 | 117.7 (4) | C2—N2—Zn1 | 117.2 (3) |
C11—C12—H12 | 121.1 | C3—N2—Zn1 | 135.1 (3) |
C13—C12—H12 | 121.1 | C2—N3—C8 | 109.7 (4) |
C12—C13—C14 | 120.7 (5) | C2—N3—H3 | 125.1 |
C12—C13—H13 | 119.7 | C8—N3—H3 | 125.1 |
C14—C13—H13 | 119.7 | C10—N4—C11 | 106.7 (3) |
C15—C14—C13 | 122.1 (5) | C10—N4—Zn1 | 116.5 (3) |
C15—C14—H14 | 119.0 | C11—N4—Zn1 | 136.6 (3) |
C13—C14—H14 | 119.0 | C10—N5—C16 | 108.8 (3) |
C14—C15—C16 | 116.8 (5) | C10—N5—H5A | 125.6 |
C14—C15—H15 | 121.6 | C16—N5—H5A | 125.6 |
C16—C15—H15 | 121.6 | C18—N6—C19 | 105.4 (3) |
N5—C16—C15 | 132.0 (4) | C18—N6—Zn1 | 118.7 (2) |
N5—C16—C11 | 105.9 (3) | C19—N6—Zn1 | 135.8 (2) |
C15—C16—C11 | 121.9 (4) | C18—N7—C24 | 107.8 (3) |
N1—C17—C18 | 108.5 (3) | C18—N7—H7A | 126.1 |
N1—C17—H17A | 110.0 | C24—N7—H7A | 126.1 |
C18—C17—H17A | 110.0 | C25—N8—C36 | 116.1 (5) |
N1—C17—H17B | 110.0 | C25—N8—C35 | 114.6 (4) |
C18—C17—H17B | 110.0 | C36—N8—C35 | 109.6 (5) |
H17A—C17—H17B | 108.4 | Zn1—O1—H1C | 118.6 |
N6—C18—N7 | 112.7 (3) | Zn1—O1—H1D | 128.4 |
N6—C18—C17 | 123.1 (4) | H1C—O1—H1D | 110.0 |
N7—C18—C17 | 124.1 (3) | O8—Cl1—O6 | 111.4 (6) |
C24—C19—C20 | 121.4 (3) | O8—Cl1—O7 | 110.9 (6) |
C24—C19—N6 | 108.4 (3) | O6—Cl1—O7 | 112.5 (6) |
C20—C19—N6 | 130.3 (3) | O8—Cl1—O5 | 111.5 (6) |
C21—C20—C19 | 116.4 (4) | O6—Cl1—O5 | 107.5 (4) |
C21—C20—H20 | 121.8 | O7—Cl1—O5 | 102.7 (4) |
C19—C20—H20 | 121.8 | H9C—O9—H9D | 107.4 |
C22—C21—C20 | 121.6 (4) | H10A—O10—H10B | 112.9 |
C22—C21—H21 | 119.2 | O4—S1—O2 | 111.5 (2) |
C20—C21—H21 | 119.2 | O4—S1—O3 | 113.2 (2) |
C23—C22—C21 | 122.6 (4) | O2—S1—O3 | 111.96 (18) |
C23—C22—H22 | 118.7 | O4—S1—C30 | 107.01 (18) |
C21—C22—H22 | 118.7 | O2—S1—C30 | 107.56 (18) |
C22—C23—C24 | 116.0 (4) | O3—S1—C30 | 105.05 (19) |
C22—C23—H23 | 122.0 | H11B—O11—O11i | 139.0 |
C24—C23—H23 | 122.0 | H11B—O11—H11A | 122.5 |
N7—C24—C19 | 105.7 (3) | O11i—O11—H11B | 139.0 |
N7—C24—C23 | 132.2 (4) | H11A—O11—H11B | 122.5 |
C19—C24—C23 | 122.0 (4) | ||
N1—C1—C2—N2 | 28.6 (6) | N4—Zn1—N1—C9 | 28.2 (3) |
N1—C1—C2—N3 | −156.6 (4) | N6—Zn1—N1—C9 | −98.0 (3) |
C8—C3—C4—C5 | 0.4 (6) | N2—Zn1—N1—C17 | −100.0 (3) |
N2—C3—C4—C5 | −178.8 (4) | N4—Zn1—N1—C17 | 148.1 (3) |
C3—C4—C5—C6 | −0.5 (7) | N6—Zn1—N1—C17 | 21.9 (3) |
C4—C5—C6—C7 | 1.3 (10) | N3—C2—N2—C3 | −0.2 (5) |
C5—C6—C7—C8 | −1.7 (11) | C1—C2—N2—C3 | 175.3 (4) |
C6—C7—C8—N3 | 179.7 (6) | N3—C2—N2—Zn1 | 174.6 (3) |
C6—C7—C8—C3 | 1.5 (9) | C1—C2—N2—Zn1 | −9.9 (5) |
C4—C3—C8—N3 | −179.5 (4) | C4—C3—N2—C2 | 179.5 (5) |
N2—C3—C8—N3 | −0.1 (5) | C8—C3—N2—C2 | 0.2 (5) |
C4—C3—C8—C7 | −0.9 (7) | C4—C3—N2—Zn1 | 5.9 (7) |
N2—C3—C8—C7 | 178.5 (5) | C8—C3—N2—Zn1 | −173.3 (3) |
N1—C9—C10—N4 | 22.6 (6) | N4—Zn1—N2—C2 | 64.8 (3) |
N1—C9—C10—N5 | −156.5 (4) | N6—Zn1—N2—C2 | −73.6 (3) |
N4—C11—C12—C13 | −175.8 (4) | O1—Zn1—N2—C2 | 171.3 (3) |
C16—C11—C12—C13 | −0.3 (6) | N1—Zn1—N2—C2 | −6.1 (3) |
C11—C12—C13—C14 | 0.3 (7) | N4—Zn1—N2—C3 | −122.1 (4) |
C12—C13—C14—C15 | −0.4 (9) | N6—Zn1—N2—C3 | 99.5 (4) |
C13—C14—C15—C16 | 0.5 (8) | O1—Zn1—N2—C3 | −15.7 (4) |
C14—C15—C16—N5 | 175.7 (5) | N1—Zn1—N2—C3 | 167.0 (4) |
C14—C15—C16—C11 | −0.6 (7) | N2—C2—N3—C8 | 0.2 (5) |
C12—C11—C16—N5 | −176.6 (4) | C1—C2—N3—C8 | −175.1 (4) |
N4—C11—C16—N5 | −0.2 (5) | C7—C8—N3—C2 | −178.4 (6) |
C12—C11—C16—C15 | 0.5 (7) | C3—C8—N3—C2 | 0.0 (5) |
N4—C11—C16—C15 | 176.9 (4) | N5—C10—N4—C11 | 1.1 (5) |
N1—C17—C18—N6 | 23.6 (6) | C9—C10—N4—C11 | −178.1 (4) |
N1—C17—C18—N7 | −160.1 (4) | N5—C10—N4—Zn1 | −175.5 (3) |
C24—C19—C20—C21 | 0.5 (5) | C9—C10—N4—Zn1 | 5.3 (5) |
N6—C19—C20—C21 | 179.7 (3) | C12—C11—N4—C10 | 175.4 (4) |
C19—C20—C21—C22 | −0.1 (6) | C16—C11—N4—C10 | −0.5 (4) |
C20—C21—C22—C23 | 0.1 (6) | C12—C11—N4—Zn1 | −9.1 (7) |
C21—C22—C23—C24 | −0.6 (6) | C16—C11—N4—Zn1 | 175.0 (3) |
C20—C19—C24—N7 | 179.1 (3) | N2—Zn1—N4—C10 | −90.6 (3) |
N6—C19—C24—N7 | −0.2 (4) | N6—Zn1—N4—C10 | 46.2 (3) |
C20—C19—C24—C23 | −1.0 (5) | O1—Zn1—N4—C10 | 160.4 (3) |
N6—C19—C24—C23 | 179.7 (3) | N1—Zn1—N4—C10 | −18.5 (3) |
C22—C23—C24—N7 | −179.2 (4) | N2—Zn1—N4—C11 | 94.3 (4) |
C22—C23—C24—C19 | 1.0 (6) | N6—Zn1—N4—C11 | −129.0 (4) |
N8—C25—C26—C27 | −177.5 (5) | O1—Zn1—N4—C11 | −14.8 (4) |
C34—C25—C26—C27 | 5.5 (8) | N1—Zn1—N4—C11 | 166.3 (4) |
C25—C26—C27—C28 | 0.6 (9) | N4—C10—N5—C16 | −1.3 (5) |
C26—C27—C28—C29 | −2.8 (8) | C9—C10—N5—C16 | 177.9 (4) |
C27—C28—C29—C30 | 179.5 (4) | C15—C16—N5—C10 | −175.8 (5) |
C27—C28—C29—C34 | −1.3 (6) | C11—C16—N5—C10 | 0.9 (5) |
C28—C29—C30—C31 | 172.0 (4) | N7—C18—N6—C19 | −0.6 (4) |
C34—C29—C30—C31 | −7.2 (6) | C17—C18—N6—C19 | 176.0 (4) |
C28—C29—C30—S1 | −7.4 (5) | N7—C18—N6—Zn1 | −179.6 (2) |
C34—C29—C30—S1 | 173.4 (3) | C17—C18—N6—Zn1 | −2.9 (5) |
C29—C30—C31—C32 | 0.4 (6) | C24—C19—N6—C18 | 0.5 (4) |
S1—C30—C31—C32 | 179.9 (3) | C20—C19—N6—C18 | −178.7 (4) |
C30—C31—C32—C33 | 4.4 (7) | C24—C19—N6—Zn1 | 179.2 (3) |
C31—C32—C33—C34 | −2.2 (8) | C20—C19—N6—Zn1 | −0.1 (6) |
C32—C33—C34—C29 | −4.8 (7) | N2—Zn1—N6—C18 | 57.5 (3) |
C32—C33—C34—C25 | 178.0 (4) | N4—Zn1—N6—C18 | −75.5 (3) |
C30—C29—C34—C33 | 9.2 (6) | O1—Zn1—N6—C18 | 172.5 (3) |
C28—C29—C34—C33 | −170.0 (4) | N1—Zn1—N6—C18 | −10.9 (3) |
C30—C29—C34—C25 | −173.5 (4) | N2—Zn1—N6—C19 | −121.0 (3) |
C28—C29—C34—C25 | 7.3 (6) | N4—Zn1—N6—C19 | 106.0 (3) |
C26—C25—C34—C33 | 167.9 (5) | O1—Zn1—N6—C19 | −6.0 (4) |
N8—C25—C34—C33 | −9.3 (6) | N1—Zn1—N6—C19 | 170.6 (3) |
C26—C25—C34—C29 | −9.4 (7) | N6—C18—N7—C24 | 0.5 (4) |
N8—C25—C34—C29 | 173.4 (4) | C17—C18—N7—C24 | −176.1 (4) |
C2—C1—N1—C9 | −140.5 (4) | C19—C24—N7—C18 | −0.2 (4) |
C2—C1—N1—C17 | 86.9 (4) | C23—C24—N7—C18 | 180.0 (4) |
C2—C1—N1—Zn1 | −27.9 (4) | C26—C25—N8—C36 | −14.9 (8) |
C10—C9—N1—C1 | 80.9 (4) | C34—C25—N8—C36 | 162.1 (5) |
C10—C9—N1—C17 | −146.7 (3) | C26—C25—N8—C35 | 114.6 (7) |
C10—C9—N1—Zn1 | −32.4 (4) | C34—C25—N8—C35 | −68.4 (7) |
C18—C17—N1—C1 | −141.5 (4) | C31—C30—S1—O4 | 126.5 (3) |
C18—C17—N1—C9 | 85.3 (4) | C29—C30—S1—O4 | −54.1 (4) |
C18—C17—N1—Zn1 | −27.6 (4) | C31—C30—S1—O2 | −113.5 (3) |
N2—Zn1—N1—C1 | 19.7 (3) | C29—C30—S1—O2 | 65.9 (3) |
N4—Zn1—N1—C1 | −92.2 (3) | C31—C30—S1—O3 | 5.9 (4) |
N6—Zn1—N1—C1 | 141.5 (3) | C29—C30—S1—O3 | −174.7 (3) |
N2—Zn1—N1—C9 | 140.2 (3) |
Symmetry code: (i) −x+1, y, −z+1/2. |
D—H···A | D—H | H···A | D···A | D—H···A |
O10—H10B···O6ii | 0.83 | 2.13 | 2.901 (10) | 155 |
O10—H10A···O3ii | 0.83 | 1.93 | 2.756 (6) | 175 |
N5—H5A···O9iii | 0.86 | 2.19 | 2.938 (5) | 146 |
N7—H7A···O4iv | 0.86 | 2.12 | 2.914 (4) | 153 |
N3—H3···O7iv | 0.86 | 2.43 | 3.115 (9) | 137 |
O9—H9D···O3 | 0.83 | 1.98 | 2.804 (5) | 175 |
O9—H9C···O10 | 0.83 | 1.80 | 2.580 (7) | 158 |
O1—H1D···O9 | 0.82 | 1.91 | 2.700 (4) | 163 |
O1—H1C···O2 | 0.82 | 1.90 | 2.675 (4) | 158 |
C13—H13···O6ii | 0.93 | 2.58 | 3.453 (9) | 156 |
C17—H17B···O5iv | 0.97 | 2.40 | 3.347 (7) | 166 |
Symmetry codes: (ii) −x+1/2, −y+1/2, −z+1; (iii) −x+1/2, −y+3/2, −z+1; (iv) −x+1, −y+1, −z+1. |
Experimental details
Crystal data | |
Chemical formula | [Zn(C24H21N7)(H2O)](C12H12NO3S)(ClO4)·2.5H2O |
Mr | 885.64 |
Crystal system, space group | Monoclinic, C2/c |
Temperature (K) | 298 |
a, b, c (Å) | 26.327 (2), 12.4462 (10), 25.166 (2) |
β (°) | 100.242 (2) |
V (Å3) | 8115.0 (11) |
Z | 8 |
Radiation type | Mo Kα |
µ (mm−1) | 0.79 |
Crystal size (mm) | 0.30 × 0.20 × 0.10 |
Data collection | |
Diffractometer | Bruker SMART CCD |
Absorption correction | Multi-scan (SADABS; Sheldrick, 1996) |
Tmin, Tmax | 0.788, 0.925 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 32018, 7146, 5127 |
Rint | 0.079 |
(sin θ/λ)max (Å−1) | 0.595 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.062, 0.180, 0.99 |
No. of reflections | 7146 |
No. of parameters | 525 |
No. of restraints | 21 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.96, −0.51 |
Computer programs: SMART (Bruker, 2001), SAINT (Bruker, 2001), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), PLATON (Spek, 2009), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
O10—H10B···O6i | 0.83 | 2.13 | 2.901 (10) | 154.5 |
O10—H10A···O3i | 0.83 | 1.93 | 2.756 (6) | 175.1 |
N5—H5A···O9ii | 0.86 | 2.19 | 2.938 (5) | 145.8 |
N7—H7A···O4iii | 0.86 | 2.12 | 2.914 (4) | 153.4 |
N3—H3···O7iii | 0.86 | 2.43 | 3.115 (9) | 136.6 |
O9—H9D···O3 | 0.83 | 1.98 | 2.804 (5) | 175.3 |
O9—H9C···O10 | 0.83 | 1.80 | 2.580 (7) | 157.8 |
O1—H1D···O9 | 0.82 | 1.91 | 2.700 (4) | 163.3 |
O1—H1C···O2 | 0.82 | 1.90 | 2.675 (4) | 157.9 |
C13—H13···O6i | 0.93 | 2.58 | 3.453 (9) | 155.7 |
C17—H17B···O5iii | 0.97 | 2.40 | 3.347 (7) | 166.1 |
Symmetry codes: (i) −x+1/2, −y+1/2, −z+1; (ii) −x+1/2, −y+3/2, −z+1; (iii) −x+1, −y+1, −z+1. |
Acknowledgements
The authors are grateful to the Science Technology Research Programme of the Education Office of Hubei Province (grant No. Q20092503) for financial support.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Imidazole (Im) and benzimidazole (Bzim) are common species in biological and biochemical structure and function (Sundberg et al.,1977; Santoro et al., 2000). Tris(1H-benzimidazol-2-ylmethyl)-amine (NTB) is a benzimidazole-rich ligand, which has the advantage that the basicity of the coordinating group approximates to that of histidine (pKb: histidine = 7.96 and benzimidazole = 8.47; Main, 1992). Several examples of NTB-metal compounds have been reported (Tian et al., 2004; Wu et al., 2004; Li et al., 2005), and the title compound, (I), is part of our effort in order to contribute to this research. Herein we report its crystal structure.
In (I) (Fig .1), the ZnII ion is coordinated by four benzimidazole (bzim) N atoms of the NTB ligand and one O atom of H2O ligand, forming a five-coordinated distorted bipyramidal geometry. One amino N atom (N1) and one O atom (O1) of the H2O ligand occupy the axial positions, the other three bzim-N atoms (N2, N4 and N6) are located in the equatorial plane. All bond lengths and bond angles are as expected. In the crystal, N—H···O and O—H···O hydrogen bonds connect the components into a two-dimensional network parallel to (001). In addition there are weak intermolecular C—H···O hydrogen bonds (Fig. 2).