metal-organic compounds
Di-μ-azido-κ4N:N-bis{aqua[bis(1H-benzimidazol-2-ylmethyl)amine]copper(II)} dinitrate
aKey Laboratory of Pesticide & Chemical Biology, Ministry of Education, College of Chemistry, Central China Normal University, Wuhan 430079, People's Republic of China
*Correspondence e-mail: yuanyuan_luo1@126.com
In the centrosymmetric dinuclear title complex, [Cu2(N3)2(C16H15N5)2(H2O)2](NO3)2, the CuII ion is in a distorted octahedral coordination environment with long axial Cu—Nazide [2.821 (6) Å] and Cu—Owater [2.747 (5) Å] bonds as a result of the Jahn–Teller effect. Two symmetry-related azide ligands bridge in μ2-modes giving a Cu⋯Cu distance of 3.533 (2) Å. In the crystal, N—H⋯O and O—H⋯O hydrogen bonds link the components into a three-dimensional network. In addition, there are weak intermolecular C—H⋯N hydrogen bonds and π–π stacking interactions with centroid–centroid distances ranging from 3.562 (2) to 3.974 (2) Å.
Related literature
For the biological applications of polybenzimidazole metal coordination compounds, see: Liao et al. (2001); Girasolo et al. (2000); Young et al. (1995). For details of the Jahn–Teller effect, see: Brown et al. (1967). For the preparation of bis[N-(benzimidazole-2-ylmethyl)] amine, see: Adams et al. (1990).
Experimental
Crystal data
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Refinement
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Data collection: SMART (Bruker, 2001); cell SAINT (Bruker, 2001); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: PLATON (Spek, 2009); software used to prepare material for publication: PLATON.
Supporting information
https://doi.org/10.1107/S1600536811045909/lh5362sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536811045909/lh5362Isup2.hkl
All the reagents and solvents were used as obtained without further purification. Bis(benzimidazol-2-yl-methyl) amine (IDB) was prepared according to the method described by Adams et al. (1990). IDB (0.277 g, 1.0 mmol), NaN3 (0.065 g, 1.0 mmol) and Cu(NO3)2.3H2O (0.242 g, 1.0 mmol) was dissolved in 15 ml me thanol and stirred for half an hour. The resulting solution was filtered and the resulting solution was stand at room temperature for two weeks. Then blue block-shaped crystals of (I) suitable for for X-ray diffraction were obtained at the bottom of the vessel.
H atoms bonded to C atoms were placed in ideal positions refined in a riding-model appoximation with C–H distances of 0.93Å (aromatic), 0.97Å (methylene) and with Uiso(H) = 1.2Ueq(C). H atoms bonded to N and O atoms were found in difference maps and refined with constraints of N—H = 0.86 (2)Å and O—H = 0.82 (2) Å, and Uiso(H) = 1.2Ueq(N) or 1.5Ueq(O).
Polybenzimidazole (Polybzim) metal coordination compounds have been often used to mimic some biological activities, such as superoxide dismutase (Liao et al., 2001), DNA probe (Girasolo et al., 2000), alkaline phosphatase (Young et al., 1995). In this paper, we report the
of a polybzim copper complex (I), ([Cu(IDB)(µ-N3).H2O]2.(NO3)2), formed by bis[N-(benzimidazol-2-ylmethyl)]amine, sodium azide and copper nitrate in 95% methanol solution.In (I), the long Cu—N6a (2.820 (5) Å, symmetry code (a): - x, 1 - y, - z) and Cu—O4 (2.747 (4) Å) bond distances are due to the Jahn-Teller effect (Brown et al., 1967). In the centrosymmetric dinuclear complex, the unique CuII ion is in a distorted octahedral coordination environment. Two azide ligands bridgein µ2– modes giving a Cu···Cu distance of 3.533 (2)Å. In the crystal, cations and nitrate anions are linked into a three-dimensional network (Fig.2) by a combination of N—H···O, O—H···O and weak C—H···O hydrogen bonds (Table 2). In addtion, π–π stacking interactions with centroid to centroid distances ranging from 3.562 (2)Å to 3.974 (2) Å are also observed.
For the biological applications of polybenzimidazole metal coordination compounds, see: Liao et al. (2001); Girasolo et al. (2000); Young et al. (1995). For details of the Jahn–Teller effect, see: Brown et al. (1967). For the preparation of bis[N-(benzimidazole-2-ylmethyl)] amine, see: Adams et al. (1990).
Data collection: SMART (Bruker, 2001); cell
SAINT (Bruker, 2001); data reduction: SAINT (Bruker, 2001); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: PLATON (Spek, 2009); software used to prepare material for publication: PLATON (Spek, 2009).Fig. 1. The molecular structure of (I) with displacement ellipsoids drawn at the 30% probability level (symmetry code (a): - x, 1 - y, - z). | |
Fig. 2. Part of the crystal structure of (I), showing the formation of the three-dimensional network by hydrogen bonds (dashed lines). Hydrogen atoms not involved in the motif have been omitted for clarity. |
[Cu2(N3)2(C16H15N5)2(H2O)2](NO3)2 | F(000) = 948 |
Mr = 925.85 | Dx = 1.657 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2yn | Cell parameters from 1625 reflections |
a = 11.1435 (10) Å | θ = 2.3–19.7° |
b = 14.1942 (12) Å | µ = 1.23 mm−1 |
c = 12.6567 (11) Å | T = 289 K |
β = 112.046 (1)° | Block, blue |
V = 1855.6 (3) Å3 | 0.20 × 0.20 × 0.10 mm |
Z = 2 |
Bruker SMART APEX CCD diffractometer | 3269 independent reflections |
Radiation source: fine focus sealed Siemens Mo tube | 2307 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.071 |
0.3° wide ω exposures scans | θmax = 25.0°, θmin = 2.1° |
Absorption correction: multi-scan (SADABS; Bruker, 2001) | h = −13→13 |
Tmin = 0.792, Tmax = 0.887 | k = −16→14 |
13705 measured reflections | l = −15→15 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.071 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.171 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.09 | w = 1/[σ2(Fo2) + (0.0796P)2 + 1.2353P] where P = (Fo2 + 2Fc2)/3 |
3269 reflections | (Δ/σ)max = 0.001 |
286 parameters | Δρmax = 0.78 e Å−3 |
6 restraints | Δρmin = −0.49 e Å−3 |
[Cu2(N3)2(C16H15N5)2(H2O)2](NO3)2 | V = 1855.6 (3) Å3 |
Mr = 925.85 | Z = 2 |
Monoclinic, P21/n | Mo Kα radiation |
a = 11.1435 (10) Å | µ = 1.23 mm−1 |
b = 14.1942 (12) Å | T = 289 K |
c = 12.6567 (11) Å | 0.20 × 0.20 × 0.10 mm |
β = 112.046 (1)° |
Bruker SMART APEX CCD diffractometer | 3269 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2001) | 2307 reflections with I > 2σ(I) |
Tmin = 0.792, Tmax = 0.887 | Rint = 0.071 |
13705 measured reflections |
R[F2 > 2σ(F2)] = 0.071 | 6 restraints |
wR(F2) = 0.171 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.09 | Δρmax = 0.78 e Å−3 |
3269 reflections | Δρmin = −0.49 e Å−3 |
286 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Cu1 | 0.11004 (7) | 0.50588 (5) | 0.14302 (5) | 0.0427 (3) | |
C1 | 0.0889 (6) | 0.3158 (4) | 0.2197 (5) | 0.0482 (15) | |
H1A | 0.0034 | 0.2917 | 0.1748 | 0.058* | |
H1B | 0.1275 | 0.2757 | 0.2859 | 0.058* | |
C2 | 0.1714 (5) | 0.3173 (4) | 0.1500 (4) | 0.0393 (13) | |
C3 | 0.2744 (5) | 0.3736 (4) | 0.0492 (4) | 0.0376 (13) | |
C4 | 0.3333 (5) | 0.4286 (4) | −0.0078 (4) | 0.0438 (14) | |
H4 | 0.3273 | 0.4939 | −0.0082 | 0.053* | |
C5 | 0.4012 (6) | 0.3829 (5) | −0.0638 (5) | 0.0514 (16) | |
H5 | 0.4397 | 0.4181 | −0.1044 | 0.062* | |
C6 | 0.4134 (6) | 0.2848 (5) | −0.0609 (5) | 0.0556 (17) | |
H6 | 0.4618 | 0.2562 | −0.0979 | 0.067* | |
C7 | 0.3557 (6) | 0.2304 (4) | −0.0050 (5) | 0.0497 (15) | |
H7 | 0.3623 | 0.1651 | −0.0045 | 0.060* | |
C8 | 0.2877 (5) | 0.2751 (4) | 0.0506 (4) | 0.0396 (13) | |
C9 | −0.0342 (6) | 0.4390 (4) | 0.2785 (5) | 0.0486 (15) | |
H9A | −0.0233 | 0.4218 | 0.3557 | 0.058* | |
H9B | −0.1107 | 0.4076 | 0.2260 | 0.058* | |
C10 | −0.0471 (5) | 0.5443 (4) | 0.2630 (4) | 0.0422 (13) | |
C11 | −0.0245 (5) | 0.6839 (4) | 0.2032 (4) | 0.0352 (12) | |
C12 | 0.0091 (5) | 0.7629 (4) | 0.1561 (4) | 0.0425 (14) | |
H12 | 0.0600 | 0.7585 | 0.1125 | 0.051* | |
C13 | −0.0366 (5) | 0.8486 (4) | 0.1771 (5) | 0.0462 (14) | |
H13 | −0.0172 | 0.9028 | 0.1455 | 0.055* | |
C14 | −0.1105 (6) | 0.8561 (5) | 0.2438 (5) | 0.0525 (16) | |
H14 | −0.1379 | 0.9153 | 0.2568 | 0.063* | |
C15 | −0.1442 (5) | 0.7788 (4) | 0.2909 (5) | 0.0479 (15) | |
H15 | −0.1941 | 0.7840 | 0.3353 | 0.058* | |
C16 | −0.0999 (5) | 0.6915 (4) | 0.2692 (4) | 0.0415 (14) | |
N1 | 0.0799 (5) | 0.4121 (4) | 0.2551 (4) | 0.0534 (13) | |
H1C | 0.144 (4) | 0.429 (5) | 0.315 (3) | 0.064* | |
N2 | 0.2008 (4) | 0.3982 (3) | 0.1129 (4) | 0.0413 (11) | |
N3 | 0.2202 (5) | 0.2429 (3) | 0.1156 (4) | 0.0429 (11) | |
H3A | 0.214 (6) | 0.1862 (17) | 0.129 (5) | 0.051* | |
N4 | 0.0095 (4) | 0.5898 (3) | 0.2030 (3) | 0.0363 (10) | |
N5 | −0.1132 (4) | 0.6021 (3) | 0.3045 (4) | 0.0425 (11) | |
H5A | −0.150 (5) | 0.586 (4) | 0.350 (4) | 0.051* | |
N6 | 0.1104 (5) | 0.5834 (4) | 0.0151 (4) | 0.0523 (13) | |
N7 | 0.1896 (6) | 0.6430 (4) | 0.0265 (4) | 0.0521 (13) | |
N8 | 0.2602 (7) | 0.7025 (5) | 0.0279 (6) | 0.091 (2) | |
N9 | 0.3202 (6) | 0.4259 (4) | 0.5493 (5) | 0.0575 (14) | |
O1 | 0.2058 (5) | 0.4516 (4) | 0.5211 (4) | 0.0719 (13) | |
O2 | 0.3693 (5) | 0.4251 (4) | 0.4759 (4) | 0.0842 (16) | |
O3 | 0.3826 (5) | 0.4022 (4) | 0.6480 (4) | 0.0759 (14) | |
O4 | 0.3352 (5) | 0.5660 (4) | 0.3111 (4) | 0.0681 (13) | |
H4A | 0.335 (6) | 0.541 (6) | 0.371 (4) | 0.102* | |
H4B | 0.410 (3) | 0.568 (6) | 0.313 (6) | 0.102* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cu1 | 0.0529 (5) | 0.0355 (5) | 0.0500 (4) | 0.0068 (3) | 0.0310 (4) | 0.0091 (3) |
C1 | 0.054 (4) | 0.038 (4) | 0.055 (4) | 0.001 (3) | 0.023 (3) | 0.011 (3) |
C2 | 0.044 (3) | 0.032 (3) | 0.044 (3) | 0.002 (3) | 0.019 (3) | 0.007 (2) |
C3 | 0.037 (3) | 0.038 (3) | 0.038 (3) | 0.001 (3) | 0.015 (3) | 0.000 (2) |
C4 | 0.040 (3) | 0.043 (4) | 0.051 (3) | −0.003 (3) | 0.019 (3) | −0.001 (3) |
C5 | 0.050 (4) | 0.056 (4) | 0.055 (4) | −0.007 (3) | 0.028 (3) | −0.007 (3) |
C6 | 0.049 (4) | 0.065 (5) | 0.053 (4) | 0.005 (3) | 0.019 (3) | −0.012 (3) |
C7 | 0.044 (4) | 0.040 (4) | 0.060 (4) | 0.004 (3) | 0.015 (3) | −0.008 (3) |
C8 | 0.037 (3) | 0.036 (3) | 0.039 (3) | 0.001 (3) | 0.007 (3) | −0.001 (2) |
C9 | 0.044 (4) | 0.054 (4) | 0.053 (3) | 0.000 (3) | 0.023 (3) | 0.013 (3) |
C10 | 0.041 (3) | 0.048 (4) | 0.039 (3) | 0.001 (3) | 0.016 (3) | 0.005 (3) |
C11 | 0.032 (3) | 0.036 (3) | 0.033 (3) | 0.002 (2) | 0.008 (2) | −0.004 (2) |
C12 | 0.044 (3) | 0.042 (4) | 0.046 (3) | −0.003 (3) | 0.022 (3) | −0.002 (3) |
C13 | 0.040 (3) | 0.041 (4) | 0.058 (4) | −0.003 (3) | 0.019 (3) | 0.000 (3) |
C14 | 0.052 (4) | 0.043 (4) | 0.062 (4) | 0.003 (3) | 0.021 (3) | −0.009 (3) |
C15 | 0.041 (4) | 0.062 (4) | 0.042 (3) | 0.006 (3) | 0.016 (3) | −0.010 (3) |
C16 | 0.034 (3) | 0.050 (4) | 0.037 (3) | 0.001 (3) | 0.009 (3) | 0.001 (3) |
N1 | 0.059 (4) | 0.047 (3) | 0.067 (3) | −0.008 (3) | 0.039 (3) | −0.001 (3) |
N2 | 0.044 (3) | 0.033 (3) | 0.049 (3) | 0.005 (2) | 0.020 (2) | 0.008 (2) |
N3 | 0.048 (3) | 0.030 (3) | 0.050 (3) | 0.002 (2) | 0.017 (2) | 0.005 (2) |
N4 | 0.036 (3) | 0.038 (3) | 0.038 (2) | 0.001 (2) | 0.018 (2) | 0.0039 (19) |
N5 | 0.043 (3) | 0.048 (3) | 0.046 (3) | 0.003 (2) | 0.027 (2) | 0.003 (2) |
N6 | 0.068 (4) | 0.044 (3) | 0.054 (3) | 0.003 (3) | 0.033 (3) | 0.012 (2) |
N7 | 0.064 (4) | 0.053 (4) | 0.053 (3) | 0.016 (3) | 0.037 (3) | 0.013 (3) |
N8 | 0.110 (6) | 0.083 (5) | 0.108 (5) | −0.030 (4) | 0.071 (5) | −0.003 (4) |
N9 | 0.072 (4) | 0.054 (4) | 0.060 (4) | −0.012 (3) | 0.040 (3) | −0.005 (3) |
O1 | 0.062 (3) | 0.086 (4) | 0.078 (3) | 0.011 (3) | 0.038 (3) | 0.005 (3) |
O2 | 0.107 (4) | 0.084 (4) | 0.100 (4) | 0.007 (3) | 0.083 (3) | 0.009 (3) |
O3 | 0.084 (4) | 0.084 (4) | 0.063 (3) | 0.000 (3) | 0.031 (3) | 0.006 (3) |
O4 | 0.072 (3) | 0.048 (3) | 0.084 (3) | 0.014 (3) | 0.029 (3) | −0.003 (2) |
Cu1—N2 | 1.947 (4) | C9—H9A | 0.9700 |
Cu1—N6 | 1.959 (5) | C9—H9B | 0.9700 |
Cu1—N4 | 1.972 (4) | C10—N4 | 1.323 (6) |
Cu1—N1 | 2.062 (5) | C10—N5 | 1.336 (7) |
Cu1—O4 | 2.747 (5) | C11—C12 | 1.386 (7) |
Cu1—N6i | 2.821 (6) | C11—N4 | 1.388 (6) |
C1—N1 | 1.454 (8) | C11—C16 | 1.394 (7) |
C1—C2 | 1.494 (7) | C12—C13 | 1.381 (8) |
C1—H1A | 0.9700 | C12—H12 | 0.9300 |
C1—H1B | 0.9700 | C13—C14 | 1.388 (8) |
C2—N2 | 1.327 (7) | C13—H13 | 0.9300 |
C2—N3 | 1.333 (7) | C14—C15 | 1.367 (8) |
C3—C4 | 1.384 (7) | C14—H14 | 0.9300 |
C3—N2 | 1.394 (6) | C15—C16 | 1.398 (8) |
C3—C8 | 1.405 (8) | C15—H15 | 0.9300 |
C4—C5 | 1.377 (7) | C16—N5 | 1.372 (7) |
C4—H4 | 0.9300 | N1—H1C | 0.86 (2) |
C5—C6 | 1.399 (9) | N3—H3A | 0.83 (2) |
C5—H5 | 0.9300 | N5—H5A | 0.86 (2) |
C6—C7 | 1.360 (8) | N6—N7 | 1.191 (7) |
C6—H6 | 0.9300 | N7—N8 | 1.150 (8) |
C7—C8 | 1.367 (8) | N9—O3 | 1.228 (6) |
C7—H7 | 0.9300 | N9—O2 | 1.243 (6) |
C8—N3 | 1.385 (7) | N9—O1 | 1.243 (7) |
C9—N1 | 1.460 (7) | O4—H4A | 0.84 (2) |
C9—C10 | 1.507 (8) | O4—H4B | 0.83 (2) |
N2—Cu1—N6 | 96.73 (19) | N4—C10—N5 | 112.2 (5) |
N2—Cu1—N4 | 163.95 (17) | N4—C10—C9 | 121.1 (5) |
N6—Cu1—N4 | 99.01 (19) | N5—C10—C9 | 126.7 (5) |
N2—Cu1—N1 | 81.88 (19) | C12—C11—N4 | 131.3 (5) |
N6—Cu1—N1 | 169.2 (2) | C12—C11—C16 | 121.0 (5) |
N4—Cu1—N1 | 82.07 (19) | N4—C11—C16 | 107.6 (5) |
N2—Cu1—O4 | 90.27 (17) | C13—C12—C11 | 116.8 (5) |
N6—Cu1—O4 | 100.4 (2) | C13—C12—H12 | 121.6 |
N4—Cu1—O4 | 90.01 (16) | C11—C12—H12 | 121.6 |
N1—Cu1—O4 | 90.29 (18) | C12—C13—C14 | 122.0 (6) |
N2—Cu1—N6i | 83.48 (17) | C12—C13—H13 | 119.0 |
N6—Cu1—N6i | 86.4 (2) | C14—C13—H13 | 119.0 |
N4—Cu1—N6i | 94.31 (16) | C15—C14—C13 | 121.8 (6) |
N1—Cu1—N6i | 82.82 (18) | C15—C14—H14 | 119.1 |
O4—Cu1—N6i | 171.27 (14) | C13—C14—H14 | 119.1 |
N1—C1—C2 | 107.3 (5) | C14—C15—C16 | 116.8 (5) |
N1—C1—H1A | 110.3 | C14—C15—H15 | 121.6 |
C2—C1—H1A | 110.3 | C16—C15—H15 | 121.6 |
N1—C1—H1B | 110.3 | N5—C16—C11 | 106.6 (5) |
C2—C1—H1B | 110.3 | N5—C16—C15 | 131.8 (5) |
H1A—C1—H1B | 108.5 | C11—C16—C15 | 121.6 (5) |
N2—C2—N3 | 112.6 (5) | C1—N1—C9 | 118.3 (5) |
N2—C2—C1 | 120.6 (5) | C1—N1—Cu1 | 110.3 (3) |
N3—C2—C1 | 126.8 (5) | C9—N1—Cu1 | 110.5 (4) |
C4—C3—N2 | 131.1 (5) | C1—N1—H1C | 114 (5) |
C4—C3—C8 | 119.9 (5) | C9—N1—H1C | 104 (4) |
N2—C3—C8 | 109.0 (5) | Cu1—N1—H1C | 98 (4) |
C5—C4—C3 | 117.5 (6) | C2—N2—C3 | 105.3 (4) |
C5—C4—H4 | 121.2 | C2—N2—Cu1 | 113.3 (3) |
C3—C4—H4 | 121.2 | C3—N2—Cu1 | 140.5 (4) |
C4—C5—C6 | 121.5 (6) | C2—N3—C8 | 108.2 (4) |
C4—C5—H5 | 119.3 | C2—N3—H3A | 128 (4) |
C6—C5—H5 | 119.3 | C8—N3—H3A | 123 (4) |
C7—C6—C5 | 121.2 (6) | C10—N4—C11 | 106.3 (4) |
C7—C6—H6 | 119.4 | C10—N4—Cu1 | 112.8 (4) |
C5—C6—H6 | 119.4 | C11—N4—Cu1 | 140.9 (3) |
C6—C7—C8 | 117.7 (6) | C10—N5—C16 | 107.3 (4) |
C6—C7—H7 | 121.1 | C10—N5—H5A | 125 (4) |
C8—C7—H7 | 121.1 | C16—N5—H5A | 127 (4) |
C7—C8—N3 | 133.0 (6) | N7—N6—Cu1 | 122.0 (4) |
C7—C8—C3 | 122.1 (5) | N8—N7—N6 | 174.1 (7) |
N3—C8—C3 | 104.9 (5) | O3—N9—O2 | 121.2 (6) |
N1—C9—C10 | 106.3 (4) | O3—N9—O1 | 120.0 (5) |
N1—C9—H9A | 110.5 | O2—N9—O1 | 118.7 (6) |
C10—C9—H9A | 110.5 | Cu1—O4—H4A | 105 (5) |
N1—C9—H9B | 110.5 | Cu1—O4—H4B | 131 (5) |
C10—C9—H9B | 110.5 | H4A—O4—H4B | 109 (3) |
H9A—C9—H9B | 108.7 | ||
N1—C1—C2—N2 | −12.8 (7) | C8—C3—N2—C2 | −0.2 (6) |
N1—C1—C2—N3 | 169.1 (5) | C4—C3—N2—Cu1 | 13.8 (10) |
N2—C3—C4—C5 | 179.7 (5) | C8—C3—N2—Cu1 | −167.8 (4) |
C8—C3—C4—C5 | 1.4 (8) | N6—Cu1—N2—C2 | −152.5 (4) |
C3—C4—C5—C6 | −1.7 (9) | N4—Cu1—N2—C2 | 16.0 (9) |
C4—C5—C6—C7 | 1.7 (9) | N1—Cu1—N2—C2 | 16.7 (4) |
C5—C6—C7—C8 | −1.4 (9) | O4—Cu1—N2—C2 | 107.0 (4) |
C6—C7—C8—N3 | −179.0 (6) | N6i—Cu1—N2—C2 | −66.9 (4) |
C6—C7—C8—C3 | 1.2 (8) | N6—Cu1—N2—C3 | 14.4 (6) |
C4—C3—C8—C7 | −1.3 (8) | N4—Cu1—N2—C3 | −177.1 (6) |
N2—C3—C8—C7 | −179.9 (5) | N1—Cu1—N2—C3 | −176.4 (6) |
C4—C3—C8—N3 | 178.9 (5) | O4—Cu1—N2—C3 | −86.1 (6) |
N2—C3—C8—N3 | 0.3 (6) | N6i—Cu1—N2—C3 | 100.0 (6) |
N1—C9—C10—N4 | 20.0 (7) | N2—C2—N3—C8 | 0.1 (6) |
N1—C9—C10—N5 | −160.1 (5) | C1—C2—N3—C8 | 178.4 (5) |
N4—C11—C12—C13 | −176.7 (5) | C7—C8—N3—C2 | 180.0 (6) |
C16—C11—C12—C13 | −0.5 (8) | C3—C8—N3—C2 | −0.2 (6) |
C11—C12—C13—C14 | 1.2 (8) | N5—C10—N4—C11 | −1.4 (6) |
C12—C13—C14—C15 | −1.2 (9) | C9—C10—N4—C11 | 178.4 (5) |
C13—C14—C15—C16 | 0.3 (9) | N5—C10—N4—Cu1 | 179.0 (4) |
C12—C11—C16—N5 | −178.7 (5) | C9—C10—N4—Cu1 | −1.1 (6) |
N4—C11—C16—N5 | −1.8 (6) | C12—C11—N4—C10 | 178.5 (6) |
C12—C11—C16—C15 | −0.2 (8) | C16—C11—N4—C10 | 2.0 (6) |
N4—C11—C16—C15 | 176.7 (5) | C12—C11—N4—Cu1 | −2.2 (10) |
C14—C15—C16—N5 | 178.4 (6) | C16—C11—N4—Cu1 | −178.7 (4) |
C14—C15—C16—C11 | 0.3 (8) | N2—Cu1—N4—C10 | −11.6 (9) |
C2—C1—N1—C9 | 153.2 (5) | N6—Cu1—N4—C10 | 156.8 (4) |
C2—C1—N1—Cu1 | 24.7 (6) | N1—Cu1—N4—C10 | −12.3 (4) |
C10—C9—N1—C1 | −156.2 (5) | O4—Cu1—N4—C10 | −102.6 (4) |
C10—C9—N1—Cu1 | −27.8 (5) | N6i—Cu1—N4—C10 | 69.8 (4) |
N2—Cu1—N1—C1 | −23.7 (4) | N2—Cu1—N4—C11 | 169.1 (6) |
N6—Cu1—N1—C1 | 59.6 (12) | N6—Cu1—N4—C11 | −22.5 (6) |
N4—Cu1—N1—C1 | 156.1 (4) | N1—Cu1—N4—C11 | 168.4 (6) |
O4—Cu1—N1—C1 | −113.9 (4) | O4—Cu1—N4—C11 | 78.1 (6) |
N6i—Cu1—N1—C1 | 60.7 (4) | N6i—Cu1—N4—C11 | −109.5 (6) |
N2—Cu1—N1—C9 | −156.3 (4) | N4—C10—N5—C16 | 0.3 (6) |
N6—Cu1—N1—C9 | −73.0 (12) | C9—C10—N5—C16 | −179.6 (5) |
N4—Cu1—N1—C9 | 23.4 (4) | C11—C16—N5—C10 | 0.9 (6) |
O4—Cu1—N1—C9 | 113.4 (4) | C15—C16—N5—C10 | −177.4 (6) |
N6i—Cu1—N1—C9 | −71.9 (4) | N2—Cu1—N6—N7 | −97.0 (5) |
N3—C2—N2—C3 | 0.1 (6) | N4—Cu1—N6—N7 | 86.2 (5) |
C1—C2—N2—C3 | −178.3 (5) | N1—Cu1—N6—N7 | −178.9 (9) |
N3—C2—N2—Cu1 | 171.5 (4) | O4—Cu1—N6—N7 | −5.5 (5) |
C1—C2—N2—Cu1 | −6.9 (7) | N6i—Cu1—N6—N7 | −180.0 (6) |
C4—C3—N2—C2 | −178.6 (6) |
Symmetry code: (i) −x, −y+1, −z. |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1C···O1 | 0.86 (2) | 2.45 (4) | 3.173 (7) | 142 (5) |
N1—H1C···O2 | 0.86 (2) | 2.57 (3) | 3.388 (8) | 159 (6) |
N3—H3A···O4ii | 0.83 (2) | 2.02 (3) | 2.825 (7) | 162 (6) |
N5—H5A···O1iii | 0.86 (2) | 2.02 (2) | 2.868 (6) | 171 (5) |
O4—H4A···O2 | 0.84 (2) | 2.06 (5) | 2.810 (7) | 149 (8) |
O4—H4B···O3iv | 0.83 (2) | 2.21 (3) | 3.022 (7) | 166 (8) |
C1—H1B···N8ii | 0.97 | 2.45 | 3.404 (9) | 169 |
Symmetry codes: (ii) −x+1/2, y−1/2, −z+1/2; (iii) −x, −y+1, −z+1; (iv) −x+1, −y+1, −z+1. |
Experimental details
Crystal data | |
Chemical formula | [Cu2(N3)2(C16H15N5)2(H2O)2](NO3)2 |
Mr | 925.85 |
Crystal system, space group | Monoclinic, P21/n |
Temperature (K) | 289 |
a, b, c (Å) | 11.1435 (10), 14.1942 (12), 12.6567 (11) |
β (°) | 112.046 (1) |
V (Å3) | 1855.6 (3) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 1.23 |
Crystal size (mm) | 0.20 × 0.20 × 0.10 |
Data collection | |
Diffractometer | Bruker SMART APEX CCD |
Absorption correction | Multi-scan (SADABS; Bruker, 2001) |
Tmin, Tmax | 0.792, 0.887 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 13705, 3269, 2307 |
Rint | 0.071 |
(sin θ/λ)max (Å−1) | 0.595 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.071, 0.171, 1.09 |
No. of reflections | 3269 |
No. of parameters | 286 |
No. of restraints | 6 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.78, −0.49 |
Computer programs: SMART (Bruker, 2001), SAINT (Bruker, 2001), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1C···O1 | 0.86 (2) | 2.45 (4) | 3.173 (7) | 142 (5) |
N1—H1C···O2 | 0.86 (2) | 2.57 (3) | 3.388 (8) | 159 (6) |
N3—H3A···O4i | 0.83 (2) | 2.02 (3) | 2.825 (7) | 162 (6) |
N5—H5A···O1ii | 0.86 (2) | 2.02 (2) | 2.868 (6) | 171 (5) |
O4—H4A···O2 | 0.84 (2) | 2.06 (5) | 2.810 (7) | 149 (8) |
O4—H4B···O3iii | 0.83 (2) | 2.21 (3) | 3.022 (7) | 166 (8) |
C1—H1B···N8i | 0.97 | 2.45 | 3.404 (9) | 169.1 |
Symmetry codes: (i) −x+1/2, y−1/2, −z+1/2; (ii) −x, −y+1, −z+1; (iii) −x+1, −y+1, −z+1. |
Acknowledgements
We thank Central China Normal University for supporting this work.
References
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Polybenzimidazole (Polybzim) metal coordination compounds have been often used to mimic some biological activities, such as superoxide dismutase (Liao et al., 2001), DNA probe (Girasolo et al., 2000), alkaline phosphatase (Young et al., 1995). In this paper, we report the crystal structure of a polybzim copper complex (I), ([Cu(IDB)(µ-N3).H2O]2.(NO3)2), formed by bis[N-(benzimidazol-2-ylmethyl)]amine, sodium azide and copper nitrate in 95% methanol solution.
In (I), the long Cu—N6a (2.820 (5) Å, symmetry code (a): - x, 1 - y, - z) and Cu—O4 (2.747 (4) Å) bond distances are due to the Jahn-Teller effect (Brown et al., 1967). In the centrosymmetric dinuclear complex, the unique CuII ion is in a distorted octahedral coordination environment. Two azide ligands bridgein µ2– modes giving a Cu···Cu distance of 3.533 (2)Å. In the crystal, cations and nitrate anions are linked into a three-dimensional network (Fig.2) by a combination of N—H···O, O—H···O and weak C—H···O hydrogen bonds (Table 2). In addtion, π–π stacking interactions with centroid to centroid distances ranging from 3.562 (2)Å to 3.974 (2) Å are also observed.