organic compounds
(S)-Methyl 3-(3,4-dimethoxyphenyl)-2-[2-(diphenylphosphanyl)benzamido]propanoate
aSchool of Pharmacy and Pharmacology, University of KwaZulu-Natal, Durban 4000, South Africa, and bSchool of Chemistry, University of KwaZulu-Natal, Durban 4000, South Africa
*Correspondence e-mail: maguireg@ukzn.ac.za
Molecules of the title compound, C31H30NO5P, show a sttagered conformation about the C—C bond joining the dimethoxybenzene group to the chiral centre, with the dimethoxybenzene ring gauche to the amide group and anti to the ester group. In the crystal, weak intermolecular N—H⋯O and C—H⋯O hydrogen bonds form layers parallel to (110).
Related literature
For related structures, see: Clegg & Elsegood, (2003). For organocatalysts prepared from a related precursor, see: Naicker et al. (2010, 2011). For analogous precusors to several biologically active compounds, see: Zalán et al. (2006).
Experimental
Crystal data
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Data collection
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Data collection: COLLECT (Nonius, 2000); cell DENZO-SMN (Otwinowski & Minor, 1997); data reduction: DENZO-SMN; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: OLEX2 (Dolomanov et al., 2009); software used to prepare material for publication: SHELXL97.
Supporting information
https://doi.org/10.1107/S1600536811047179/lr2034sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536811047179/lr2034Isup2.hkl
Supporting information file. DOI: https://doi.org/10.1107/S1600536811047179/lr2034Isup3.cml
2-(diphenylphosphanyl)benzoic acid (1.3 g, 4.2 mmol) was dissolved was dissolved in DMF (15 ml) and THF (5 ml) followed by addition of HBTU (4.6 mmol), DIPEA (8.4 mmol) and (S)-methyl 2-amino-3-(3,4-dimethoxyphenyl)propanoate (1.0 g, 4.2 mmol). The reaction mixture was then stirred at room temperature until no more starting material could be detected by TLC analysis. The reaction mixture was poured into 30 volumes of chilled water; the mixture was then extracted thrice with ethyl acetate (20 ml). The combined extracts were dried over anhydrous sodium sulfate and then concentrated to dryness affording the crude product. This crude product was purified by
(50:50 EtOAc/Hexane, Rf = 0.6) to afford the product 2.20 g (98%) as a white solid. M.p. = 420 K.Recrystallization from ethyl acetate at room temperature afforded crystals suitable for X-ray analysis.
All non-hydrogen atoms were refined anisotropically. All hydrogen atoms could be found in the difference electron density maps. H1N was thus positioned and refined freely with independent isotropic temperature factors. The other hydrogen atoms were placed with idealized positions and refined as riding on their parents atoms with Uiso = 1.2 or 1.5 times Ueq (C).
The title compound is being used as a precusor to novel chiral organocatalysts (Naicker et al. 2010 and 2011). Analogous structures are well known precusors to several biologically active compounds (Zalán et al., 2006).
There is an analogous X-ray
reported (Clegg and Elsegood, 2003), which has a tert-butoxy group at the ester carboxyl carbon and a (9-H-Fluoren-9-yl)-methoxy group attached to the amide carboxyl carbon. The title compound has a methoxy and a 2-diphenylphoshinobenzene group at the these positions respectively.The title compound exists in a well ordered
about the C7—C8 bond (Fig. 1). As in the analogous X-ray structure, the dimethoxybenzene ring is gauche to the amide group and anti to the ester group. The configuration at C8 was confirmed to be S, on the basis of anomalous scaterring effects, Flack x parameter = -0.08 (6).The molecules in the crystal are connected by relatively weak hydrogen bond interactions (Fig. 2) in which the N1—H1···O2 and the C10—H10A···O3 interactions give chains along the b axis. These chains are interconnected via the C21—H21···O4 interaction giving a layered packing system.
For related structures, see: Clegg & Elsegood, (2003). For organocatalysts prepared from a related precursor, see: Naicker et al. (2010, 2011). For analogous precusors to several biologically active compounds, see: Zalán et al. (2006).
Data collection: COLLECT (Nonius, 2000); cell
DENZO-SMN (Otwinowski & Minor, 1997); data reduction: DENZO-SMN (Otwinowski & Minor, 1997); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: OLEX2 (Dolomanov et al., 2009); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).C31H30NO5P | F(000) = 556 |
Mr = 527.53 | Dx = 1.307 Mg m−3 |
Monoclinic, P21 | Melting point: 420 K |
Hall symbol: P 2yb | Mo Kα radiation, λ = 0.71073 Å |
a = 10.2218 (3) Å | Cell parameters from 6654 reflections |
b = 8.4535 (2) Å | θ = 2.6–28.3° |
c = 15.7633 (4) Å | µ = 0.14 mm−1 |
β = 100.300 (2)° | T = 173 K |
V = 1340.16 (6) Å3 | Needle, colourless |
Z = 2 | 0.18 × 0.15 × 0.14 mm |
Nonius KappaCCD diffractometer | 5550 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.000 |
Graphite monochromator | θmax = 28.3°, θmin = 2.6° |
1.2° φ scans and ω scans | h = −13→13 |
6654 measured reflections | k = −11→11 |
6654 independent reflections | l = −21→20 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.034 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.079 | w = 1/[σ2(Fo2) + (0.0449P)2 + 0.0315P] where P = (Fo2 + 2Fc2)/3 |
S = 1.04 | (Δ/σ)max < 0.001 |
6654 reflections | Δρmax = 0.17 e Å−3 |
350 parameters | Δρmin = −0.25 e Å−3 |
1 restraint | Absolute structure: Flack (1983), 3108 Friedel pairs |
Primary atom site location: structure-invariant direct methods | Absolute structure parameter: −0.08 (6) |
C31H30NO5P | V = 1340.16 (6) Å3 |
Mr = 527.53 | Z = 2 |
Monoclinic, P21 | Mo Kα radiation |
a = 10.2218 (3) Å | µ = 0.14 mm−1 |
b = 8.4535 (2) Å | T = 173 K |
c = 15.7633 (4) Å | 0.18 × 0.15 × 0.14 mm |
β = 100.300 (2)° |
Nonius KappaCCD diffractometer | 5550 reflections with I > 2σ(I) |
6654 measured reflections | Rint = 0.000 |
6654 independent reflections |
R[F2 > 2σ(F2)] = 0.034 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.079 | Δρmax = 0.17 e Å−3 |
S = 1.04 | Δρmin = −0.25 e Å−3 |
6654 reflections | Absolute structure: Flack (1983), 3108 Friedel pairs |
350 parameters | Absolute structure parameter: −0.08 (6) |
1 restraint |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
P1 | 0.92652 (4) | 0.26037 (5) | 0.25790 (2) | 0.02523 (9) | |
O1 | 0.48837 (10) | 0.38280 (13) | −0.10867 (6) | 0.0317 (2) | |
O2 | 0.32444 (10) | 0.23354 (13) | −0.07247 (7) | 0.0307 (2) | |
O3 | 0.74192 (10) | 0.13486 (13) | 0.08701 (8) | 0.0350 (3) | |
O4 | 0.59931 (12) | 0.12392 (14) | 0.36882 (7) | 0.0368 (3) | |
O5 | 0.60041 (13) | 0.38582 (16) | 0.45360 (7) | 0.0418 (3) | |
N1 | 0.63147 (12) | 0.36602 (16) | 0.05671 (8) | 0.0245 (3) | |
H1N | 0.6418 (16) | 0.461 (2) | 0.0513 (10) | 0.028 (5)* | |
C1 | 0.50466 (14) | 0.2509 (2) | 0.23296 (9) | 0.0284 (3) | |
H1 | 0.5024 | 0.1538 | 0.2024 | 0.034* | |
C2 | 0.55163 (14) | 0.2534 (2) | 0.32072 (9) | 0.0285 (3) | |
C3 | 0.55354 (16) | 0.3961 (2) | 0.36673 (10) | 0.0315 (4) | |
C4 | 0.51056 (17) | 0.5329 (2) | 0.32311 (11) | 0.0349 (4) | |
H4 | 0.5119 | 0.6301 | 0.3535 | 0.042* | |
C5 | 0.46479 (16) | 0.52901 (19) | 0.23368 (11) | 0.0334 (4) | |
H5 | 0.4364 | 0.6242 | 0.2040 | 0.040* | |
C6 | 0.46036 (14) | 0.38986 (19) | 0.18847 (9) | 0.0275 (3) | |
C7 | 0.40679 (15) | 0.3851 (2) | 0.09251 (9) | 0.0295 (3) | |
H7A | 0.3922 | 0.4949 | 0.0710 | 0.035* | |
H7B | 0.3195 | 0.3310 | 0.0828 | 0.035* | |
C8 | 0.49880 (13) | 0.30031 (16) | 0.03990 (9) | 0.0239 (3) | |
H8 | 0.5042 | 0.1861 | 0.0567 | 0.029* | |
C9 | 0.43998 (14) | 0.31191 (17) | −0.05562 (9) | 0.0243 (3) | |
C10 | 0.24347 (15) | 0.2574 (2) | −0.15711 (10) | 0.0361 (4) | |
H10A | 0.2296 | 0.3709 | −0.1677 | 0.054* | |
H10B | 0.1573 | 0.2051 | −0.1595 | 0.054* | |
H10C | 0.2889 | 0.2123 | −0.2012 | 0.054* | |
C11 | 0.74258 (13) | 0.27876 (18) | 0.07843 (8) | 0.0227 (3) | |
C12 | 0.86721 (14) | 0.37492 (18) | 0.08839 (9) | 0.0226 (3) | |
C13 | 0.88991 (15) | 0.4619 (2) | 0.01690 (9) | 0.0288 (3) | |
H13 | 0.8264 | 0.4589 | −0.0351 | 0.035* | |
C14 | 1.00365 (17) | 0.5522 (2) | 0.02102 (10) | 0.0332 (4) | |
H14 | 1.0202 | 0.6074 | −0.0285 | 0.040* | |
C15 | 1.09289 (15) | 0.56158 (19) | 0.09765 (11) | 0.0318 (4) | |
H15 | 1.1694 | 0.6269 | 0.1016 | 0.038* | |
C16 | 1.07142 (14) | 0.47595 (19) | 0.16908 (10) | 0.0281 (3) | |
H16 | 1.1339 | 0.4838 | 0.2213 | 0.034* | |
C17 | 0.96012 (13) | 0.37840 (18) | 0.16613 (9) | 0.0235 (3) | |
C18 | 1.01378 (14) | 0.37421 (19) | 0.35058 (9) | 0.0266 (3) | |
C19 | 0.93471 (16) | 0.4673 (2) | 0.39468 (10) | 0.0344 (4) | |
H19 | 0.8411 | 0.4685 | 0.3760 | 0.041* | |
C20 | 0.99036 (18) | 0.5573 (2) | 0.46472 (11) | 0.0420 (4) | |
H20 | 0.9349 | 0.6192 | 0.4940 | 0.050* | |
C21 | 1.12645 (18) | 0.5579 (2) | 0.49259 (11) | 0.0390 (4) | |
H21 | 1.1648 | 0.6214 | 0.5403 | 0.047* | |
C22 | 1.20615 (16) | 0.4658 (2) | 0.45073 (10) | 0.0361 (4) | |
H22 | 1.2997 | 0.4655 | 0.4700 | 0.043* | |
C23 | 1.15084 (15) | 0.3736 (2) | 0.38064 (10) | 0.0321 (3) | |
H23 | 1.2067 | 0.3093 | 0.3528 | 0.039* | |
C24 | 1.04146 (15) | 0.09383 (18) | 0.25728 (9) | 0.0263 (3) | |
C25 | 1.01978 (17) | −0.0371 (2) | 0.30662 (10) | 0.0346 (4) | |
H25 | 0.9461 | −0.0375 | 0.3358 | 0.042* | |
C26 | 1.10386 (19) | −0.1664 (2) | 0.31385 (12) | 0.0435 (4) | |
H26 | 1.0882 | −0.2541 | 0.3483 | 0.052* | |
C27 | 1.21046 (17) | −0.1684 (2) | 0.27115 (11) | 0.0395 (4) | |
H27 | 1.2688 | −0.2568 | 0.2768 | 0.047* | |
C28 | 1.23209 (16) | −0.0417 (2) | 0.22019 (11) | 0.0351 (4) | |
H28 | 1.3042 | −0.0439 | 0.1897 | 0.042* | |
C29 | 1.14867 (15) | 0.0889 (2) | 0.21343 (10) | 0.0313 (4) | |
H29 | 1.1646 | 0.1760 | 0.1786 | 0.038* | |
C30 | 0.6152 (2) | −0.0166 (2) | 0.32221 (12) | 0.0446 (4) | |
H30A | 0.5276 | −0.0568 | 0.2954 | 0.067* | |
H30B | 0.6613 | −0.0964 | 0.3617 | 0.067* | |
H30C | 0.6676 | 0.0066 | 0.2774 | 0.067* | |
C31 | 0.6213 (2) | 0.5309 (2) | 0.50066 (12) | 0.0485 (5) | |
H31A | 0.6819 | 0.5985 | 0.4751 | 0.073* | |
H31B | 0.6603 | 0.5085 | 0.5609 | 0.073* | |
H31C | 0.5360 | 0.5854 | 0.4982 | 0.073* |
U11 | U22 | U33 | U12 | U13 | U23 | |
P1 | 0.02244 (17) | 0.02806 (19) | 0.02497 (18) | −0.00083 (17) | 0.00365 (14) | 0.00163 (17) |
O1 | 0.0317 (6) | 0.0349 (6) | 0.0290 (5) | −0.0030 (5) | 0.0067 (5) | 0.0031 (5) |
O2 | 0.0272 (5) | 0.0309 (6) | 0.0307 (5) | −0.0069 (5) | −0.0039 (4) | 0.0041 (5) |
O3 | 0.0266 (6) | 0.0204 (6) | 0.0570 (8) | 0.0016 (5) | 0.0046 (5) | 0.0029 (5) |
O4 | 0.0513 (7) | 0.0302 (6) | 0.0272 (6) | 0.0053 (5) | 0.0022 (5) | 0.0015 (5) |
O5 | 0.0531 (7) | 0.0453 (7) | 0.0255 (6) | 0.0012 (6) | 0.0026 (5) | −0.0058 (5) |
N1 | 0.0206 (6) | 0.0188 (7) | 0.0326 (7) | −0.0002 (5) | 0.0005 (5) | 0.0012 (5) |
C1 | 0.0275 (7) | 0.0292 (8) | 0.0285 (7) | −0.0016 (7) | 0.0048 (6) | −0.0028 (7) |
C2 | 0.0280 (7) | 0.0297 (8) | 0.0275 (7) | 0.0004 (7) | 0.0040 (6) | 0.0050 (7) |
C3 | 0.0304 (8) | 0.0375 (9) | 0.0266 (8) | −0.0006 (7) | 0.0052 (7) | −0.0031 (7) |
C4 | 0.0378 (9) | 0.0319 (9) | 0.0357 (9) | 0.0024 (7) | 0.0085 (7) | −0.0056 (7) |
C5 | 0.0354 (9) | 0.0298 (9) | 0.0362 (9) | 0.0037 (7) | 0.0092 (7) | 0.0025 (7) |
C6 | 0.0213 (7) | 0.0329 (8) | 0.0285 (8) | 0.0010 (6) | 0.0051 (6) | 0.0030 (7) |
C7 | 0.0246 (7) | 0.0343 (8) | 0.0293 (8) | 0.0039 (7) | 0.0040 (6) | 0.0050 (7) |
C8 | 0.0204 (7) | 0.0225 (8) | 0.0279 (8) | −0.0023 (6) | 0.0016 (6) | 0.0029 (6) |
C9 | 0.0234 (7) | 0.0201 (7) | 0.0290 (8) | 0.0004 (6) | 0.0038 (6) | −0.0008 (6) |
C10 | 0.0340 (8) | 0.0364 (8) | 0.0324 (8) | −0.0055 (8) | −0.0090 (6) | 0.0034 (8) |
C11 | 0.0243 (7) | 0.0253 (8) | 0.0186 (6) | −0.0001 (6) | 0.0038 (5) | −0.0019 (6) |
C12 | 0.0203 (7) | 0.0222 (7) | 0.0251 (7) | 0.0025 (6) | 0.0037 (6) | −0.0029 (6) |
C13 | 0.0289 (8) | 0.0311 (8) | 0.0258 (8) | −0.0007 (7) | 0.0031 (6) | 0.0029 (7) |
C14 | 0.0317 (8) | 0.0358 (9) | 0.0334 (9) | −0.0033 (7) | 0.0089 (7) | 0.0071 (7) |
C15 | 0.0233 (7) | 0.0306 (9) | 0.0413 (9) | −0.0051 (7) | 0.0048 (7) | 0.0054 (7) |
C16 | 0.0233 (7) | 0.0296 (8) | 0.0297 (8) | −0.0016 (7) | 0.0002 (6) | 0.0010 (7) |
C17 | 0.0207 (7) | 0.0221 (7) | 0.0275 (7) | 0.0033 (6) | 0.0036 (6) | 0.0000 (6) |
C18 | 0.0280 (8) | 0.0285 (8) | 0.0232 (7) | 0.0004 (7) | 0.0045 (6) | 0.0028 (6) |
C19 | 0.0305 (8) | 0.0414 (9) | 0.0318 (9) | 0.0010 (8) | 0.0068 (7) | −0.0020 (8) |
C20 | 0.0456 (10) | 0.0476 (11) | 0.0342 (9) | 0.0021 (9) | 0.0111 (8) | −0.0087 (8) |
C21 | 0.0453 (10) | 0.0445 (10) | 0.0257 (8) | −0.0064 (9) | 0.0022 (7) | −0.0053 (8) |
C22 | 0.0325 (8) | 0.0438 (10) | 0.0296 (8) | −0.0029 (8) | −0.0014 (7) | 0.0015 (8) |
C23 | 0.0283 (8) | 0.0382 (9) | 0.0291 (8) | 0.0029 (7) | 0.0031 (6) | 0.0028 (7) |
C24 | 0.0273 (8) | 0.0278 (8) | 0.0220 (7) | −0.0023 (6) | −0.0003 (6) | −0.0017 (6) |
C25 | 0.0392 (9) | 0.0328 (9) | 0.0320 (8) | −0.0003 (8) | 0.0069 (7) | 0.0050 (7) |
C26 | 0.0565 (11) | 0.0281 (9) | 0.0454 (10) | 0.0043 (8) | 0.0079 (9) | 0.0089 (8) |
C27 | 0.0393 (9) | 0.0325 (9) | 0.0437 (10) | 0.0092 (8) | −0.0012 (8) | −0.0057 (8) |
C28 | 0.0294 (8) | 0.0384 (9) | 0.0372 (9) | 0.0030 (8) | 0.0049 (7) | −0.0069 (8) |
C29 | 0.0317 (8) | 0.0323 (9) | 0.0302 (8) | 0.0002 (7) | 0.0063 (7) | 0.0030 (7) |
C30 | 0.0605 (12) | 0.0277 (9) | 0.0394 (10) | 0.0049 (9) | −0.0076 (9) | 0.0004 (8) |
C31 | 0.0547 (12) | 0.0533 (12) | 0.0361 (10) | −0.0007 (10) | 0.0049 (9) | −0.0177 (9) |
P1—C24 | 1.8348 (16) | C13—H13 | 0.9500 |
P1—C17 | 1.8395 (15) | C14—C15 | 1.380 (2) |
P1—C18 | 1.8413 (15) | C14—H14 | 0.9500 |
O1—C9 | 1.2046 (17) | C15—C16 | 1.389 (2) |
O2—C9 | 1.3387 (18) | C15—H15 | 0.9500 |
O2—C10 | 1.4529 (17) | C16—C17 | 1.399 (2) |
O3—C11 | 1.2242 (18) | C16—H16 | 0.9500 |
O4—C2 | 1.371 (2) | C18—C23 | 1.396 (2) |
O4—C30 | 1.421 (2) | C18—C19 | 1.399 (2) |
O5—C3 | 1.3703 (19) | C19—C20 | 1.377 (2) |
O5—C31 | 1.430 (2) | C19—H19 | 0.9500 |
N1—C11 | 1.3462 (19) | C20—C21 | 1.382 (2) |
N1—C8 | 1.4454 (18) | C20—H20 | 0.9500 |
N1—H1N | 0.82 (2) | C21—C22 | 1.377 (2) |
C1—C2 | 1.381 (2) | C21—H21 | 0.9500 |
C1—C6 | 1.401 (2) | C22—C23 | 1.388 (2) |
C1—H1 | 0.9500 | C22—H22 | 0.9500 |
C2—C3 | 1.406 (2) | C23—H23 | 0.9500 |
C3—C4 | 1.377 (2) | C24—C25 | 1.393 (2) |
C4—C5 | 1.404 (2) | C24—C29 | 1.397 (2) |
C4—H4 | 0.9500 | C25—C26 | 1.383 (2) |
C5—C6 | 1.372 (2) | C25—H25 | 0.9500 |
C5—H5 | 0.9500 | C26—C27 | 1.380 (3) |
C6—C7 | 1.514 (2) | C26—H26 | 0.9500 |
C7—C8 | 1.538 (2) | C27—C28 | 1.380 (3) |
C7—H7A | 0.9900 | C27—H27 | 0.9500 |
C7—H7B | 0.9900 | C28—C29 | 1.388 (2) |
C8—C9 | 1.521 (2) | C28—H28 | 0.9500 |
C8—H8 | 1.0000 | C29—H29 | 0.9500 |
C10—H10A | 0.9800 | C30—H30A | 0.9800 |
C10—H10B | 0.9800 | C30—H30B | 0.9800 |
C10—H10C | 0.9800 | C30—H30C | 0.9800 |
C11—C12 | 1.496 (2) | C31—H31A | 0.9800 |
C12—C13 | 1.399 (2) | C31—H31B | 0.9800 |
C12—C17 | 1.4101 (19) | C31—H31C | 0.9800 |
C13—C14 | 1.383 (2) | ||
C24—P1—C17 | 101.67 (7) | C13—C14—H14 | 120.3 |
C24—P1—C18 | 100.69 (7) | C14—C15—C16 | 120.29 (15) |
C17—P1—C18 | 102.03 (7) | C14—C15—H15 | 119.9 |
C9—O2—C10 | 116.81 (12) | C16—C15—H15 | 119.9 |
C2—O4—C30 | 116.35 (12) | C15—C16—C17 | 121.72 (14) |
C3—O5—C31 | 117.21 (14) | C15—C16—H16 | 119.1 |
C11—N1—C8 | 123.87 (13) | C17—C16—H16 | 119.1 |
C11—N1—H1N | 116.5 (12) | C16—C17—C12 | 117.29 (13) |
C8—N1—H1N | 119.6 (12) | C16—C17—P1 | 123.97 (11) |
C2—C1—C6 | 120.78 (16) | C12—C17—P1 | 118.72 (11) |
C2—C1—H1 | 119.6 | C23—C18—C19 | 117.87 (14) |
C6—C1—H1 | 119.6 | C23—C18—P1 | 125.55 (12) |
O4—C2—C1 | 124.56 (15) | C19—C18—P1 | 116.58 (11) |
O4—C2—C3 | 115.41 (12) | C20—C19—C18 | 121.10 (15) |
C1—C2—C3 | 120.03 (15) | C20—C19—H19 | 119.4 |
O5—C3—C4 | 125.14 (15) | C18—C19—H19 | 119.4 |
O5—C3—C2 | 115.56 (15) | C19—C20—C21 | 120.34 (16) |
C4—C3—C2 | 119.31 (14) | C19—C20—H20 | 119.8 |
C3—C4—C5 | 120.05 (15) | C21—C20—H20 | 119.8 |
C3—C4—H4 | 120.0 | C22—C21—C20 | 119.57 (16) |
C5—C4—H4 | 120.0 | C22—C21—H21 | 120.2 |
C6—C5—C4 | 121.06 (15) | C20—C21—H21 | 120.2 |
C6—C5—H5 | 119.5 | C21—C22—C23 | 120.49 (16) |
C4—C5—H5 | 119.5 | C21—C22—H22 | 119.8 |
C5—C6—C1 | 118.76 (14) | C23—C22—H22 | 119.8 |
C5—C6—C7 | 120.94 (14) | C22—C23—C18 | 120.61 (15) |
C1—C6—C7 | 120.29 (14) | C22—C23—H23 | 119.7 |
C6—C7—C8 | 113.84 (12) | C18—C23—H23 | 119.7 |
C6—C7—H7A | 108.8 | C25—C24—C29 | 118.02 (14) |
C8—C7—H7A | 108.8 | C25—C24—P1 | 116.15 (11) |
C6—C7—H7B | 108.8 | C29—C24—P1 | 125.82 (12) |
C8—C7—H7B | 108.8 | C26—C25—C24 | 121.04 (15) |
H7A—C7—H7B | 107.7 | C26—C25—H25 | 119.5 |
N1—C8—C9 | 110.39 (11) | C24—C25—H25 | 119.5 |
N1—C8—C7 | 111.48 (12) | C27—C26—C25 | 120.21 (16) |
C9—C8—C7 | 109.39 (11) | C27—C26—H26 | 119.9 |
N1—C8—H8 | 108.5 | C25—C26—H26 | 119.9 |
C9—C8—H8 | 108.5 | C26—C27—C28 | 119.80 (16) |
C7—C8—H8 | 108.5 | C26—C27—H27 | 120.1 |
O1—C9—O2 | 124.44 (13) | C28—C27—H27 | 120.1 |
O1—C9—C8 | 125.49 (13) | C27—C28—C29 | 120.14 (15) |
O2—C9—C8 | 110.06 (12) | C27—C28—H28 | 119.9 |
O2—C10—H10A | 109.5 | C29—C28—H28 | 119.9 |
O2—C10—H10B | 109.5 | C28—C29—C24 | 120.76 (15) |
H10A—C10—H10B | 109.5 | C28—C29—H29 | 119.6 |
O2—C10—H10C | 109.5 | C24—C29—H29 | 119.6 |
H10A—C10—H10C | 109.5 | O4—C30—H30A | 109.5 |
H10B—C10—H10C | 109.5 | O4—C30—H30B | 109.5 |
O3—C11—N1 | 123.47 (13) | H30A—C30—H30B | 109.5 |
O3—C11—C12 | 123.36 (13) | O4—C30—H30C | 109.5 |
N1—C11—C12 | 113.14 (13) | H30A—C30—H30C | 109.5 |
C13—C12—C17 | 120.39 (13) | H30B—C30—H30C | 109.5 |
C13—C12—C11 | 117.51 (12) | O5—C31—H31A | 109.5 |
C17—C12—C11 | 122.10 (12) | O5—C31—H31B | 109.5 |
C14—C13—C12 | 120.76 (14) | H31A—C31—H31B | 109.5 |
C14—C13—H13 | 119.6 | O5—C31—H31C | 109.5 |
C12—C13—H13 | 119.6 | H31A—C31—H31C | 109.5 |
C15—C14—C13 | 119.45 (14) | H31B—C31—H31C | 109.5 |
C15—C14—H14 | 120.3 | ||
C30—O4—C2—C1 | 7.8 (2) | C12—C13—C14—C15 | −2.7 (2) |
C30—O4—C2—C3 | −171.77 (14) | C13—C14—C15—C16 | 2.6 (3) |
C6—C1—C2—O4 | −178.59 (14) | C14—C15—C16—C17 | 0.0 (2) |
C6—C1—C2—C3 | 1.0 (2) | C15—C16—C17—C12 | −2.4 (2) |
C31—O5—C3—C4 | −8.0 (2) | C15—C16—C17—P1 | 179.37 (12) |
C31—O5—C3—C2 | 171.56 (14) | C13—C12—C17—C16 | 2.3 (2) |
O4—C2—C3—O5 | −1.2 (2) | C11—C12—C17—C16 | −178.21 (13) |
C1—C2—C3—O5 | 179.23 (13) | C13—C12—C17—P1 | −179.38 (11) |
O4—C2—C3—C4 | 178.39 (15) | C11—C12—C17—P1 | 0.11 (18) |
C1—C2—C3—C4 | −1.2 (2) | C24—P1—C17—C16 | −77.33 (14) |
O5—C3—C4—C5 | 179.85 (15) | C18—P1—C17—C16 | 26.42 (14) |
C2—C3—C4—C5 | 0.3 (2) | C24—P1—C17—C12 | 104.47 (12) |
C3—C4—C5—C6 | 0.8 (2) | C18—P1—C17—C12 | −151.78 (11) |
C4—C5—C6—C1 | −1.1 (2) | C24—P1—C18—C23 | 26.80 (15) |
C4—C5—C6—C7 | 178.01 (14) | C17—P1—C18—C23 | −77.71 (15) |
C2—C1—C6—C5 | 0.2 (2) | C24—P1—C18—C19 | −152.39 (12) |
C2—C1—C6—C7 | −178.91 (13) | C17—P1—C18—C19 | 103.10 (12) |
C5—C6—C7—C8 | 130.11 (15) | C23—C18—C19—C20 | 0.9 (2) |
C1—C6—C7—C8 | −50.83 (19) | P1—C18—C19—C20 | −179.80 (14) |
C11—N1—C8—C9 | −109.43 (14) | C18—C19—C20—C21 | 0.4 (3) |
C11—N1—C8—C7 | 128.76 (13) | C19—C20—C21—C22 | −1.1 (3) |
C6—C7—C8—N1 | −53.92 (17) | C20—C21—C22—C23 | 0.4 (3) |
C6—C7—C8—C9 | −176.30 (13) | C21—C22—C23—C18 | 0.9 (3) |
C10—O2—C9—O1 | −10.2 (2) | C19—C18—C23—C22 | −1.6 (2) |
C10—O2—C9—C8 | 168.85 (12) | P1—C18—C23—C22 | 179.23 (13) |
N1—C8—C9—O1 | −8.7 (2) | C17—P1—C24—C25 | −165.63 (12) |
C7—C8—C9—O1 | 114.33 (16) | C18—P1—C24—C25 | 89.57 (13) |
N1—C8—C9—O2 | 172.30 (12) | C17—P1—C24—C29 | 15.66 (15) |
C7—C8—C9—O2 | −64.66 (15) | C18—P1—C24—C29 | −89.14 (14) |
C8—N1—C11—O3 | −0.8 (2) | C29—C24—C25—C26 | 1.7 (2) |
C8—N1—C11—C12 | 177.40 (12) | P1—C24—C25—C26 | −177.15 (14) |
O3—C11—C12—C13 | 119.27 (17) | C24—C25—C26—C27 | −0.8 (3) |
N1—C11—C12—C13 | −58.97 (17) | C25—C26—C27—C28 | −0.8 (3) |
O3—C11—C12—C17 | −60.23 (19) | C26—C27—C28—C29 | 1.4 (3) |
N1—C11—C12—C17 | 121.52 (14) | C27—C28—C29—C24 | −0.5 (2) |
C17—C12—C13—C14 | 0.2 (2) | C25—C24—C29—C28 | −1.0 (2) |
C11—C12—C13—C14 | −179.31 (14) | P1—C24—C29—C28 | 177.64 (12) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1N···O2i | 0.816 (17) | 2.345 (17) | 3.1428 (17) | 166 (15) |
C10—H10A···O3i | 0.98 | 2.56 | 3.371 (2) | 140 |
C21—H21···O4ii | 0.95 | 2.58 | 3.279 (2) | 131 |
Symmetry codes: (i) −x+1, y+1/2, −z; (ii) −x+2, y+1/2, −z+1. |
Experimental details
Crystal data | |
Chemical formula | C31H30NO5P |
Mr | 527.53 |
Crystal system, space group | Monoclinic, P21 |
Temperature (K) | 173 |
a, b, c (Å) | 10.2218 (3), 8.4535 (2), 15.7633 (4) |
β (°) | 100.300 (2) |
V (Å3) | 1340.16 (6) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.14 |
Crystal size (mm) | 0.18 × 0.15 × 0.14 |
Data collection | |
Diffractometer | Nonius KappaCCD |
Absorption correction | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 6654, 6654, 5550 |
Rint | 0.000 |
(sin θ/λ)max (Å−1) | 0.666 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.034, 0.079, 1.04 |
No. of reflections | 6654 |
No. of parameters | 350 |
No. of restraints | 1 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.17, −0.25 |
Absolute structure | Flack (1983), 3108 Friedel pairs |
Absolute structure parameter | −0.08 (6) |
Computer programs: COLLECT (Nonius, 2000), DENZO-SMN (Otwinowski & Minor, 1997), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), OLEX2 (Dolomanov et al., 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1N···O2i | 0.816 (17) | 2.345 (17) | 3.1428 (17) | 166 (15) |
C10—H10A···O3i | 0.98 | 2.56 | 3.371 (2) | 140 |
C21—H21···O4ii | 0.95 | 2.58 | 3.279 (2) | 131 |
Symmetry codes: (i) −x+1, y+1/2, −z; (ii) −x+2, y+1/2, −z+1. |
Acknowledgements
The authors wish to thank Dr Hong Su of the Chemistry Department of the University of Cape Town for her assistance with the crystallographic data collection.
References
Clegg, W. & Elsegood, M. R. J. (2003). Acta Cryst. E59, o1946–o1948. Web of Science CSD CrossRef IUCr Journals Google Scholar
Dolomanov, O. V., Bourhis, L. J., Gildea, R. J., Howard, J. A. K. & Puschmann, H. (2009). J. Appl. Cryst. 42, 339–341. Web of Science CrossRef CAS IUCr Journals Google Scholar
Flack, H. D. (1983). Acta Cryst. A39, 876–881. CrossRef CAS Web of Science IUCr Journals Google Scholar
Naicker, T., Arvidsson, P. I., Kruger, H. G., Maguire, G. E. M. & Govender, T. (2011). Eur. J. Org. Chem. In the press. doi:10.1002/ejoc.201100923. Google Scholar
Naicker, T., Petzold, K., Singh, T., Arvidsson, P. I., Kruger, H. G., Maguire, G. E. M. & Govender, T. (2010). Tetrahedron Asymmetry, 21, 2859–2867. Web of Science CrossRef CAS Google Scholar
Nonius (2000). COLLECT. Nonius BV, Delft, The Netherlands. Google Scholar
Otwinowski, Z. & Minor, W. (1997). Methods in Enzymology, Vol. 276, Macromolecular Crystallography, Part A, edited by C. W. Carter Jr & R. M. Sweet, pp. 307–326. New York: Academic Press. Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Zalán, Z., Martinek, T. A., Lázár, L., Sillanpää, R. & Fülöp, F. (2006). Tetrahedron, 62, 2883–2891. Google Scholar
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The title compound is being used as a precusor to novel chiral organocatalysts (Naicker et al. 2010 and 2011). Analogous structures are well known precusors to several biologically active compounds (Zalán et al., 2006).
There is an analogous X-ray crystal structure reported (Clegg and Elsegood, 2003), which has a tert-butoxy group at the ester carboxyl carbon and a (9-H-Fluoren-9-yl)-methoxy group attached to the amide carboxyl carbon. The title compound has a methoxy and a 2-diphenylphoshinobenzene group at the these positions respectively.
The title compound exists in a well ordered staggered conformation about the C7—C8 bond (Fig. 1). As in the analogous X-ray structure, the dimethoxybenzene ring is gauche to the amide group and anti to the ester group. The configuration at C8 was confirmed to be S, on the basis of anomalous scaterring effects, Flack x parameter = -0.08 (6).
The molecules in the crystal are connected by relatively weak hydrogen bond interactions (Fig. 2) in which the N1—H1···O2 and the C10—H10A···O3 interactions give chains along the b axis. These chains are interconnected via the C21—H21···O4 interaction giving a layered packing system.