metal-organic compounds
Bis[tris(1H-pyrazol-1-yl-κN2)methane]nickel(II) bis{[tris(1H-pyrazol-1-yl-κN2)methane]tris(thiocyanato-κN)nickelate(II)} methanol disolvate
aDepartment of Chemistry and Physics, Southern Arkansas University, Magnolia, AR 71753, USA, and bDepartment of Chemistry, University of Kentucky, Lexington, KY 40506, USA
*Correspondence e-mail: gannalyubartseva@saumag.edu
Attempts to prepare the mononuclear [(tpm)NiIIL3]−1 [tpm = tris(1H-pyrazol-1-yl)methane and L = thiocyanate] anion yielded the methanol-solvated salt, [(tpm)2NiII][(tpm)NiII(NCS)3]2·2CH3OH or [Ni(C10H10N6)2][Ni(NCS)3(C10H10N6)]2·2CH3OH. The consists of half a centrosymmetric bis[tris(1H-pyrazol-1-yl)methane]nickel(II) cation and an octahedral nickelate(II) anion bound to one tpm and three L ligands, and a methanol solvent molecule. One of the L ligands is disordered over two positions with occupancy factors of 0.650 (3) and 0.350 (3). There are O—H⋯S interactions between the methanol and the disordered thiocyanate anion, and a weak C—H⋯O hydrogen bond between the cation and the methanol O atom.
Related literature
For the ligand synthesis, see: Reger et al. (2000). For structural, spectroscopic and angular overlap studies of tris(1H-pyrazol-1-yl)methane complexes, see: Astley et al. (1993). For background information on the modelling of metallo-enzyme sites by small molecules, see: Kitajima et al. (1992); Trofimenko et al. (1992); Looney et al. (1992); Looney & Parkin (1994). A previous attempt to make similar building blocks with nickel(II) and a cyanide ligand is given in Lyubartseva & Parkin (2009).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2006); cell SAINT (Bruker, 2006); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: XP in SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXL97 and local procedures.
Supporting information
https://doi.org/10.1107/S1600536811045144/ng5255sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536811045144/ng5255Isup2.hkl
The tris(pyrazolyl)methane ligand was synthesized according to the previously published procedure by Reger et al. (2000). Tetrabutylammonium thiocyanate was purchased from Aldrich and used as received. NiCl2.6H20 (475 mg, 2 mmol) was dissolved in 15 ml methanol. Tris(pyrazolyl) methane (428 mg, 2 mmol) was dissolved in 15 ml methanol. The ligand solution was added dropwise to metal solution and with moderate stirring. Once the addition was complete, tetrabutylammonium thiocyanate (1.81 g, 6 mmol) was added. The solution was filtered and methanol was evaporated slowly. Blue crystals were obtained after 3 days (549 mg, 57% yield). Elemental analysis, calculated for Ni3C48H48N30S6O2 : C 39.88, H 3.35, N 29.07; found C 39.21, H 2.99, N 29.27%. IR (cm-1): 3361, 3133, 2977, 2071, 1516, 1440, 1400, 1284, 1247, 1220, 1088, 1050, 980, 905, 858, 788, 766, 660, 608, 475.
H atoms were found in difference Fourier maps and subsequently placed in idealized positions with constrained distances of 0.98 Å (RCH3), 1.00 Å (R3CH), 0.95 Å (Csp2H), 0.84 Å (O—H), and with Uiso(H) values set to either 1.2Ueq or 1.5Ueq (RCH3, OH) of the attached atom.
To ensure satisfactory
of disordered parts of the structure, a combination of constraints and restraints were used. The SHELXL97 constraints EXYZ and EADP were used to make the geometry and displacement parameters of closely proximate disordered atoms equal. The SHELXL97 restraint command DELU was also used to ensure similar displacement parameters for closely proximate, chemically similar groups.The final weighting scheme (SHELXL-97 command "WGHT"), which is optimized to give a flat analysis of variance, had a somewhat larger than usual value for the second parameter. This is generally attributed to some form of bias, such as could be caused by unrecognized
or some other kind of incomplete model. We observed no obvious cause for the unusual weighting scheme, but the available sample was far from perfect. Indeed, the crystals were covered in a blue powder, which was likely caused by partial drying of the crystal. Some of this blue powder was easy to remove, but some was stuck to the crystal surface and could not be removed without damaging the crystals.In the final difference map there are small residual peaks clustered around the disordered isothiocyanate sulphur. This could perhaps be due to partial occupancy/disordered solvent, but all attempts to model it as such did not improve the
enough to warrant retention of the extra details.Tripodal ligands with three pyrazolyl groups are increasingly being used in small-molecule modeling of the active sites of metallo-enzymes in which the metal is coordinated to two or three imidazole groups from histidine (Kitajima et al. 1992, Trofimenko et al. 1992, Looney et al. 1992, Looney & Parkin 1994). One of the goals of this research is to explore the chemistry of the neutral ligand tris(pyrazol-1-yl)methane compared to the more extensively studied isoelectronic but anionic ligand tris(pyrazol-1-yl)borate. In attempts to prepare mononuclear [(tpm)NiIIL3]-1 , where tpm is tris(pyrazol-1-yl)methane, a symmetrical tripodal neutral nitrogen donor ligand, and L is NCS-, a uninegative N-donor pseudohalide anion, we obtained [(tpm)2NiII][(tpm)NiII(NCS)3]2.2CH3OH as blue monoclinic crystals in 57% isolated yield. The structure consists of centrosymmetric [bis[tris(1-pyrazolyl)methane-κ3]-nickel(II) cations, with NiII—N distances ranging from 2.077 (2) to 2.082 (2) Å. The intraligand N—Ni—N angles in the cation range from 85.81 (10) to 95.27 (10)°, which introduces a slight trigonal distortion from perfect octahedral geometry. The anion consists of nickellate (II) atom surrounded octahedrally by one tripodal tris(pyrazol-1-yl)methane ligand and three isothiocyanate ligands. The tpm ligand N—Ni distances range from 2.080 (3) to 2.119 (3) Å, and the isothiocyanate N—Ni distances range from 2.046 (3) to 2.070 (3) Å.
For the ligand synthesis, see: Reger et al. (2000). For structural, spectroscopic and angular overlap studies of tris(pyrazol-1-yl)methane complexes, see: Astley et al. (1993). For background information on the modelling of metallo-enzyme sites by small molecules, see: Kitajima et al. (1992); Trofimenko et al. (1992); Looney et al. (1992); Looney & Parkin (1994). A previous attempt to make similar building blocks with nickel(II) and a cyanide ligand is given in Lyubartseva & Parkin (2009).
Data collection: APEX2 (Bruker, 2006); cell
SAINT (Bruker, 2006); data reduction: SAINT (Bruker, 2006); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: XP in SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELX97 (Sheldrick, 2008) and local procedures.[Ni(C10H10N6)2][Ni(NCS)3(C10H10N6)]2·2CH4O | F(000) = 2968 |
Mr = 1445.65 | Dx = 1.556 Mg m−3 |
Monoclinic, C2/c | Cu Kα radiation, λ = 1.54178 Å |
Hall symbol: -C 2yc | Cell parameters from 9957 reflections |
a = 33.4463 (8) Å | θ = 2.9–67.8° |
b = 7.3287 (2) Å | µ = 3.52 mm−1 |
c = 27.2689 (7) Å | T = 90 K |
β = 112.590 (1)° | Rod, blue |
V = 6171.3 (3) Å3 | 0.20 × 0.06 × 0.02 mm |
Z = 4 |
Bruker X8 Proteum diffractometer | 5605 independent reflections |
Radiation source: fine-focus rotating anode | 4932 reflections with I > 2σ(I) |
Graded multilayer optics monochromator | Rint = 0.061 |
Detector resolution: 5.6 pixels mm-1 | θmax = 68.0°, θmin = 2.9° |
φ and ω scans | h = −39→39 |
Absorption correction: multi-scan (SADABS in APEX2; Bruker, 2006) | k = −8→8 |
Tmin = 0.740, Tmax = 0.933 | l = −32→32 |
41685 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.049 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.128 | H-atom parameters constrained |
S = 1.11 | w = 1/[σ2(Fo2) + (0.0515P)2 + 28.6001P] where P = (Fo2 + 2Fc2)/3 |
5605 reflections | (Δ/σ)max = 0.001 |
418 parameters | Δρmax = 1.34 e Å−3 |
6 restraints | Δρmin = −0.44 e Å−3 |
[Ni(C10H10N6)2][Ni(NCS)3(C10H10N6)]2·2CH4O | V = 6171.3 (3) Å3 |
Mr = 1445.65 | Z = 4 |
Monoclinic, C2/c | Cu Kα radiation |
a = 33.4463 (8) Å | µ = 3.52 mm−1 |
b = 7.3287 (2) Å | T = 90 K |
c = 27.2689 (7) Å | 0.20 × 0.06 × 0.02 mm |
β = 112.590 (1)° |
Bruker X8 Proteum diffractometer | 5605 independent reflections |
Absorption correction: multi-scan (SADABS in APEX2; Bruker, 2006) | 4932 reflections with I > 2σ(I) |
Tmin = 0.740, Tmax = 0.933 | Rint = 0.061 |
41685 measured reflections |
R[F2 > 2σ(F2)] = 0.049 | 6 restraints |
wR(F2) = 0.128 | H-atom parameters constrained |
S = 1.11 | w = 1/[σ2(Fo2) + (0.0515P)2 + 28.6001P] where P = (Fo2 + 2Fc2)/3 |
5605 reflections | Δρmax = 1.34 e Å−3 |
418 parameters | Δρmin = −0.44 e Å−3 |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. The crystals were covered in a blue powder, which was likely caused by partial drying of the crystal. Some of this blue stuff was easy to remove, but some was stuck to the crystal surface and could not be removed without damaging the crystal. In the final difference map there are small residual peaks clustered around the disordered thiocyanate group. This could perhaps be due to partial occupancy/disordered solvent, but all attempts to model it as such did not improve the refinement enough to warrant retention of the extra details. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
Ni1 | 0.388647 (18) | 0.19922 (7) | 0.82166 (2) | 0.02134 (16) | |
C1 | 0.38951 (11) | −0.2289 (4) | 0.82452 (14) | 0.0230 (7) | |
H1 | 0.3895 | −0.3653 | 0.8251 | 0.028* | |
N1 | 0.33737 (9) | 0.0180 (4) | 0.80613 (11) | 0.0212 (6) | |
N2 | 0.34542 (9) | −0.1642 (4) | 0.80957 (11) | 0.0196 (6) | |
C2 | 0.29596 (11) | 0.0339 (5) | 0.79732 (13) | 0.0221 (7) | |
H2 | 0.2810 | 0.1467 | 0.7933 | 0.027* | |
C3 | 0.27681 (11) | −0.1379 (5) | 0.79473 (13) | 0.0236 (7) | |
H3 | 0.2474 | −0.1630 | 0.7885 | 0.028* | |
C4 | 0.30942 (11) | −0.2617 (5) | 0.80312 (13) | 0.0214 (7) | |
H4 | 0.3072 | −0.3908 | 0.8042 | 0.026* | |
N3 | 0.41898 (9) | 0.0209 (4) | 0.88658 (12) | 0.0234 (6) | |
N4 | 0.41572 (9) | −0.1623 (4) | 0.87707 (11) | 0.0220 (6) | |
C5 | 0.44066 (11) | 0.0375 (5) | 0.93835 (14) | 0.0253 (7) | |
H5 | 0.4477 | 0.1506 | 0.9567 | 0.030* | |
C6 | 0.45189 (12) | −0.1344 (5) | 0.96261 (15) | 0.0322 (8) | |
H6 | 0.4677 | −0.1592 | 0.9992 | 0.039* | |
C7 | 0.43519 (11) | −0.2583 (5) | 0.92251 (15) | 0.0290 (8) | |
H7 | 0.4369 | −0.3874 | 0.9258 | 0.035* | |
N5 | 0.41142 (9) | 0.0136 (4) | 0.77985 (12) | 0.0241 (6) | |
N6 | 0.40755 (9) | −0.1675 (4) | 0.78705 (12) | 0.0226 (6) | |
C8 | 0.43166 (12) | 0.0246 (5) | 0.74650 (15) | 0.0286 (8) | |
H8 | 0.4389 | 0.1359 | 0.7340 | 0.034* | |
C9 | 0.44093 (12) | −0.1481 (5) | 0.73221 (15) | 0.0322 (8) | |
H9 | 0.4551 | −0.1762 | 0.7089 | 0.039* | |
C10 | 0.42528 (11) | −0.2688 (5) | 0.75883 (15) | 0.0286 (8) | |
H10 | 0.4266 | −0.3982 | 0.7578 | 0.034* | |
N7 | 0.36703 (10) | 0.3584 (4) | 0.86862 (12) | 0.0280 (7) | |
C11 | 0.36862 (11) | 0.3894 (4) | 0.91106 (15) | 0.0253 (8) | |
S1 | 0.37247 (3) | 0.43823 (13) | 0.97092 (4) | 0.0346 (2) | |
N8 | 0.35651 (10) | 0.3522 (4) | 0.75539 (12) | 0.0276 (6) | |
C12 | 0.33809 (11) | 0.4581 (5) | 0.72297 (13) | 0.0221 (7) | |
S2 | 0.31218 (3) | 0.61217 (12) | 0.67928 (3) | 0.0267 (2) | |
N9 | 0.44458 (11) | 0.3525 (4) | 0.84076 (15) | 0.0371 (8) | 0.650 (3) |
C13 | 0.4780 (2) | 0.3745 (8) | 0.8323 (3) | 0.0346 (11) | 0.650 (3) |
S3 | 0.52288 (6) | 0.4092 (2) | 0.82170 (10) | 0.0554 (6) | 0.650 (3) |
N9' | 0.44458 (11) | 0.3525 (4) | 0.84076 (15) | 0.0371 (8) | 0.350 (3) |
C13' | 0.4749 (4) | 0.3881 (14) | 0.8716 (5) | 0.0346 (11) | 0.350 (3) |
S3' | 0.52609 (11) | 0.4382 (5) | 0.91591 (17) | 0.0639 (14) | 0.350 (3) |
Ni2 | 0.2500 | 0.7500 | 0.5000 | 0.01688 (18) | |
N10 | 0.30477 (8) | 0.5976 (4) | 0.54331 (10) | 0.0187 (6) | |
N11 | 0.34180 (9) | 0.6897 (4) | 0.57058 (10) | 0.0190 (6) | |
C14 | 0.31541 (11) | 0.4229 (4) | 0.55193 (13) | 0.0219 (7) | |
H14 | 0.2959 | 0.3242 | 0.5379 | 0.026* | |
C15 | 0.35916 (11) | 0.4038 (5) | 0.58445 (14) | 0.0246 (7) | |
H15 | 0.3746 | 0.2931 | 0.5964 | 0.030* | |
C16 | 0.37506 (11) | 0.5770 (4) | 0.59556 (13) | 0.0220 (7) | |
H16 | 0.4040 | 0.6112 | 0.6168 | 0.026* | |
N12 | 0.26851 (9) | 0.9206 (4) | 0.56604 (11) | 0.0207 (6) | |
N13 | 0.31151 (9) | 0.9582 (3) | 0.59102 (11) | 0.0187 (6) | |
C17 | 0.31975 (12) | 1.0505 (5) | 0.63671 (14) | 0.0256 (7) | |
H17 | 0.3473 | 1.0900 | 0.6611 | 0.031* | |
C18 | 0.28065 (13) | 1.0760 (5) | 0.64097 (15) | 0.0331 (9) | |
H18 | 0.2755 | 1.1379 | 0.6686 | 0.040* | |
C19 | 0.24998 (12) | 0.9929 (5) | 0.59665 (14) | 0.0262 (7) | |
H19 | 0.2198 | 0.9885 | 0.5893 | 0.031* | |
N14 | 0.20875 (8) | 0.5902 (4) | 0.52268 (11) | 0.0195 (6) | |
N15 | 0.16941 (9) | 0.5474 (4) | 0.48424 (11) | 0.0188 (6) | |
C20 | 0.20858 (11) | 0.5150 (4) | 0.56683 (13) | 0.0220 (7) | |
H20 | 0.2319 | 0.5215 | 0.6004 | 0.026* | |
C21 | 0.16970 (12) | 0.4255 (5) | 0.55738 (14) | 0.0262 (7) | |
H21 | 0.1618 | 0.3611 | 0.5826 | 0.031* | |
C22 | 0.14512 (11) | 0.4486 (4) | 0.50472 (13) | 0.0217 (7) | |
H22 | 0.1166 | 0.4044 | 0.4860 | 0.026* | |
C23 | 0.15845 (11) | 0.6126 (4) | 0.43080 (13) | 0.0188 (6) | |
H23 | 0.1287 | 0.5681 | 0.4084 | 0.023* | |
O1S | 0.06346 (9) | 0.4684 (4) | 0.38493 (13) | 0.0447 (7) | |
H1S | 0.0533 | 0.3683 | 0.3705 | 0.067* | |
C1S | 0.03005 (16) | 0.5722 (8) | 0.3923 (2) | 0.0562 (13) | |
H1S1 | 0.0428 | 0.6501 | 0.4237 | 0.084* | |
H1S2 | 0.0090 | 0.4892 | 0.3974 | 0.084* | |
H1S3 | 0.0155 | 0.6484 | 0.3610 | 0.084* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Ni1 | 0.0240 (3) | 0.0130 (3) | 0.0281 (3) | −0.0013 (2) | 0.0112 (2) | 0.0001 (2) |
C1 | 0.0249 (17) | 0.0149 (16) | 0.0311 (18) | −0.0032 (13) | 0.0129 (14) | −0.0018 (13) |
N1 | 0.0254 (15) | 0.0134 (13) | 0.0269 (14) | 0.0003 (11) | 0.0123 (12) | 0.0014 (11) |
N2 | 0.0199 (14) | 0.0145 (13) | 0.0261 (14) | −0.0017 (10) | 0.0107 (11) | −0.0015 (11) |
C2 | 0.0239 (17) | 0.0188 (16) | 0.0255 (17) | 0.0024 (13) | 0.0114 (14) | 0.0016 (13) |
C3 | 0.0216 (17) | 0.0243 (17) | 0.0278 (17) | −0.0021 (14) | 0.0126 (14) | 0.0007 (14) |
C4 | 0.0239 (17) | 0.0174 (16) | 0.0258 (16) | −0.0037 (13) | 0.0128 (14) | −0.0021 (13) |
N3 | 0.0241 (15) | 0.0135 (13) | 0.0336 (16) | −0.0005 (11) | 0.0121 (12) | −0.0009 (11) |
N4 | 0.0217 (14) | 0.0152 (13) | 0.0290 (15) | −0.0009 (11) | 0.0093 (12) | −0.0010 (11) |
C5 | 0.0193 (17) | 0.0281 (18) | 0.0273 (18) | −0.0020 (14) | 0.0075 (14) | −0.0043 (14) |
C6 | 0.0223 (18) | 0.037 (2) | 0.0326 (19) | −0.0025 (15) | 0.0053 (15) | 0.0040 (16) |
C7 | 0.0219 (17) | 0.0202 (17) | 0.041 (2) | −0.0002 (14) | 0.0079 (15) | 0.0092 (15) |
N5 | 0.0266 (15) | 0.0175 (14) | 0.0324 (16) | −0.0019 (11) | 0.0158 (13) | 0.0000 (12) |
N6 | 0.0241 (15) | 0.0153 (13) | 0.0343 (16) | −0.0006 (11) | 0.0176 (12) | −0.0031 (11) |
C8 | 0.0275 (19) | 0.0284 (19) | 0.0330 (19) | −0.0053 (15) | 0.0151 (15) | 0.0003 (15) |
C9 | 0.0298 (19) | 0.036 (2) | 0.037 (2) | −0.0051 (16) | 0.0198 (16) | −0.0094 (17) |
C10 | 0.0249 (18) | 0.0234 (18) | 0.040 (2) | −0.0006 (14) | 0.0153 (16) | −0.0080 (15) |
N7 | 0.0352 (17) | 0.0172 (14) | 0.0327 (17) | 0.0006 (12) | 0.0141 (13) | −0.0011 (12) |
C11 | 0.0242 (18) | 0.0132 (16) | 0.041 (2) | −0.0018 (13) | 0.0157 (15) | −0.0005 (14) |
S1 | 0.0471 (6) | 0.0277 (5) | 0.0401 (5) | −0.0074 (4) | 0.0290 (5) | −0.0065 (4) |
N8 | 0.0303 (16) | 0.0204 (15) | 0.0350 (17) | −0.0018 (12) | 0.0157 (13) | 0.0014 (13) |
C12 | 0.0238 (17) | 0.0198 (17) | 0.0264 (17) | −0.0048 (14) | 0.0138 (14) | −0.0030 (14) |
S2 | 0.0291 (5) | 0.0257 (4) | 0.0254 (4) | −0.0008 (3) | 0.0104 (3) | 0.0054 (3) |
N9 | 0.0317 (18) | 0.0188 (16) | 0.057 (2) | −0.0024 (13) | 0.0135 (16) | 0.0059 (14) |
C13 | 0.040 (3) | 0.019 (2) | 0.042 (3) | −0.003 (2) | 0.013 (2) | 0.002 (2) |
S3 | 0.0371 (10) | 0.0350 (10) | 0.0990 (16) | −0.0052 (7) | 0.0315 (10) | 0.0063 (9) |
N9' | 0.0317 (18) | 0.0188 (16) | 0.057 (2) | −0.0024 (13) | 0.0135 (16) | 0.0059 (14) |
C13' | 0.040 (3) | 0.019 (2) | 0.042 (3) | −0.003 (2) | 0.013 (2) | 0.002 (2) |
S3' | 0.0323 (18) | 0.056 (2) | 0.077 (3) | −0.0159 (15) | −0.0082 (16) | 0.0269 (19) |
Ni2 | 0.0191 (4) | 0.0123 (4) | 0.0213 (4) | 0.0001 (3) | 0.0100 (3) | 0.0002 (3) |
N10 | 0.0208 (14) | 0.0133 (13) | 0.0237 (14) | −0.0007 (10) | 0.0105 (11) | −0.0002 (10) |
N11 | 0.0226 (14) | 0.0145 (13) | 0.0213 (13) | −0.0015 (11) | 0.0099 (11) | 0.0003 (10) |
C14 | 0.0272 (18) | 0.0106 (15) | 0.0311 (18) | 0.0003 (13) | 0.0147 (14) | 0.0007 (13) |
C15 | 0.0263 (18) | 0.0159 (16) | 0.0324 (18) | 0.0057 (13) | 0.0121 (15) | 0.0019 (13) |
C16 | 0.0200 (17) | 0.0206 (17) | 0.0256 (17) | 0.0019 (13) | 0.0089 (13) | 0.0049 (13) |
N12 | 0.0208 (14) | 0.0164 (13) | 0.0268 (15) | −0.0007 (11) | 0.0112 (12) | −0.0019 (11) |
N13 | 0.0212 (14) | 0.0128 (13) | 0.0237 (14) | 0.0002 (10) | 0.0105 (11) | −0.0009 (10) |
C17 | 0.0332 (19) | 0.0195 (17) | 0.0246 (17) | −0.0043 (14) | 0.0117 (15) | −0.0058 (13) |
C18 | 0.044 (2) | 0.0280 (19) | 0.035 (2) | −0.0018 (16) | 0.0233 (18) | −0.0105 (16) |
C19 | 0.0296 (19) | 0.0216 (17) | 0.0336 (19) | 0.0016 (14) | 0.0190 (15) | −0.0036 (14) |
N14 | 0.0184 (14) | 0.0172 (13) | 0.0223 (14) | 0.0001 (11) | 0.0071 (11) | 0.0009 (11) |
N15 | 0.0202 (14) | 0.0151 (13) | 0.0227 (14) | −0.0019 (10) | 0.0101 (11) | 0.0007 (10) |
C20 | 0.0254 (18) | 0.0208 (17) | 0.0228 (16) | 0.0017 (13) | 0.0125 (14) | 0.0017 (13) |
C21 | 0.0312 (19) | 0.0238 (18) | 0.0287 (18) | −0.0015 (14) | 0.0171 (15) | 0.0044 (14) |
C22 | 0.0242 (17) | 0.0164 (16) | 0.0278 (17) | −0.0034 (13) | 0.0134 (14) | 0.0024 (13) |
C23 | 0.0230 (16) | 0.0135 (15) | 0.0219 (16) | 0.0000 (12) | 0.0109 (13) | 0.0009 (12) |
O1S | 0.0299 (15) | 0.0500 (19) | 0.0543 (19) | −0.0059 (13) | 0.0164 (13) | −0.0060 (15) |
C1S | 0.049 (3) | 0.067 (3) | 0.061 (3) | 0.001 (2) | 0.031 (2) | 0.005 (3) |
Ni1—N8 | 2.046 (3) | Ni2—N14i | 2.077 (3) |
Ni1—N7 | 2.058 (3) | Ni2—N14 | 2.077 (3) |
Ni1—N9 | 2.070 (3) | Ni2—N12i | 2.081 (3) |
Ni1—N1 | 2.080 (3) | Ni2—N12 | 2.081 (3) |
Ni1—N5 | 2.097 (3) | Ni2—N10i | 2.082 (3) |
Ni1—N3 | 2.119 (3) | Ni2—N10 | 2.082 (3) |
C1—N6 | 1.444 (4) | N10—C14 | 1.325 (4) |
C1—N4 | 1.447 (4) | N10—N11 | 1.355 (4) |
C1—N2 | 1.450 (4) | N11—C16 | 1.342 (4) |
C1—H1 | 1.0000 | N11—C23i | 1.449 (4) |
N1—C2 | 1.317 (4) | C14—C15 | 1.396 (5) |
N1—N2 | 1.358 (4) | C14—H14 | 0.9500 |
N2—C4 | 1.352 (4) | C15—C16 | 1.365 (5) |
C2—C3 | 1.402 (5) | C15—H15 | 0.9500 |
C2—H2 | 0.9500 | C16—H16 | 0.9500 |
C3—C4 | 1.369 (5) | N12—C19 | 1.327 (4) |
C3—H3 | 0.9500 | N12—N13 | 1.362 (4) |
C4—H4 | 0.9500 | N13—C17 | 1.349 (4) |
N3—C5 | 1.322 (5) | N13—C23i | 1.447 (4) |
N3—N4 | 1.364 (4) | C17—C18 | 1.369 (5) |
N4—C7 | 1.355 (5) | C17—H17 | 0.9500 |
C5—C6 | 1.405 (5) | C18—C19 | 1.390 (5) |
C5—H5 | 0.9500 | C18—H18 | 0.9500 |
C6—C7 | 1.365 (6) | C19—H19 | 0.9500 |
C6—H6 | 0.9500 | N14—C20 | 1.326 (4) |
C7—H7 | 0.9500 | N14—N15 | 1.367 (4) |
N5—C8 | 1.328 (5) | N15—C22 | 1.358 (4) |
N5—N6 | 1.355 (4) | N15—C23 | 1.441 (4) |
N6—C10 | 1.359 (4) | C20—C21 | 1.389 (5) |
C8—C9 | 1.394 (5) | C20—H20 | 0.9500 |
C8—H8 | 0.9500 | C21—C22 | 1.364 (5) |
C9—C10 | 1.369 (5) | C21—H21 | 0.9500 |
C9—H9 | 0.9500 | C22—H22 | 0.9500 |
C10—H10 | 0.9500 | C23—N13i | 1.447 (4) |
N7—C11 | 1.160 (5) | C23—N11i | 1.449 (4) |
C11—S1 | 1.627 (4) | C23—H23 | 1.0000 |
N8—C12 | 1.160 (5) | O1S—C1S | 1.429 (6) |
C12—S2 | 1.629 (4) | O1S—H1S | 0.8400 |
N9—C13 | 1.237 (7) | C1S—H1S1 | 0.9800 |
C13—S3 | 1.652 (7) | C1S—H1S2 | 0.9800 |
C13'—S3' | 1.713 (12) | C1S—H1S3 | 0.9800 |
N8—Ni1—N7 | 92.74 (12) | N14i—Ni2—N12i | 95.27 (10) |
N8—Ni1—N9 | 92.42 (13) | N14—Ni2—N12i | 84.73 (10) |
N7—Ni1—N9 | 92.02 (14) | N14i—Ni2—N12 | 84.73 (10) |
N8—Ni1—N1 | 93.31 (12) | N14—Ni2—N12 | 95.27 (10) |
N7—Ni1—N1 | 91.68 (12) | N12i—Ni2—N12 | 179.996 (1) |
N9—Ni1—N1 | 173.02 (12) | N14i—Ni2—N10i | 93.96 (10) |
N8—Ni1—N5 | 93.02 (12) | N14—Ni2—N10i | 86.04 (10) |
N7—Ni1—N5 | 173.64 (12) | N12i—Ni2—N10i | 85.81 (10) |
N9—Ni1—N5 | 90.41 (13) | N12—Ni2—N10i | 94.19 (10) |
N1—Ni1—N5 | 85.31 (11) | N14i—Ni2—N10 | 86.04 (10) |
N8—Ni1—N3 | 175.06 (12) | N14—Ni2—N10 | 93.96 (10) |
N7—Ni1—N3 | 89.98 (12) | N12i—Ni2—N10 | 94.19 (10) |
N9—Ni1—N3 | 91.61 (12) | N12—Ni2—N10 | 85.81 (10) |
N1—Ni1—N3 | 82.48 (11) | N10i—Ni2—N10 | 180.00 (15) |
N5—Ni1—N3 | 84.08 (11) | C14—N10—N11 | 104.9 (3) |
N6—C1—N4 | 109.7 (3) | C14—N10—Ni2 | 137.4 (2) |
N6—C1—N2 | 110.8 (3) | N11—N10—Ni2 | 117.63 (19) |
N4—C1—N2 | 109.4 (3) | C16—N11—N10 | 112.2 (3) |
N6—C1—H1 | 109.0 | C16—N11—C23i | 128.6 (3) |
N4—C1—H1 | 109.0 | N10—N11—C23i | 119.3 (3) |
N2—C1—H1 | 109.0 | N10—C14—C15 | 110.7 (3) |
C2—N1—N2 | 105.4 (3) | N10—C14—H14 | 124.6 |
C2—N1—Ni1 | 135.1 (2) | C15—C14—H14 | 124.6 |
N2—N1—Ni1 | 119.2 (2) | C16—C15—C14 | 105.8 (3) |
C4—N2—N1 | 111.6 (3) | C16—C15—H15 | 127.1 |
C4—N2—C1 | 128.5 (3) | C14—C15—H15 | 127.1 |
N1—N2—C1 | 119.6 (3) | N11—C16—C15 | 106.4 (3) |
N1—C2—C3 | 111.0 (3) | N11—C16—H16 | 126.8 |
N1—C2—H2 | 124.5 | C15—C16—H16 | 126.8 |
C3—C2—H2 | 124.5 | C19—N12—N13 | 105.2 (3) |
C4—C3—C2 | 105.5 (3) | C19—N12—Ni2 | 136.8 (2) |
C4—C3—H3 | 127.2 | N13—N12—Ni2 | 117.43 (19) |
C2—C3—H3 | 127.2 | C17—N13—N12 | 111.4 (3) |
N2—C4—C3 | 106.5 (3) | C17—N13—C23i | 129.2 (3) |
N2—C4—H4 | 126.8 | N12—N13—C23i | 119.2 (3) |
C3—C4—H4 | 126.8 | N13—C17—C18 | 106.5 (3) |
C5—N3—N4 | 105.3 (3) | N13—C17—H17 | 126.8 |
C5—N3—Ni1 | 136.5 (2) | C18—C17—H17 | 126.8 |
N4—N3—Ni1 | 118.1 (2) | C17—C18—C19 | 106.0 (3) |
C7—N4—N3 | 111.3 (3) | C17—C18—H18 | 127.0 |
C7—N4—C1 | 128.7 (3) | C19—C18—H18 | 127.0 |
N3—N4—C1 | 119.6 (3) | N12—C19—C18 | 110.8 (3) |
N3—C5—C6 | 111.0 (3) | N12—C19—H19 | 124.6 |
N3—C5—H5 | 124.5 | C18—C19—H19 | 124.6 |
C6—C5—H5 | 124.5 | C20—N14—N15 | 105.2 (3) |
C7—C6—C5 | 105.4 (3) | C20—N14—Ni2 | 137.7 (2) |
C7—C6—H6 | 127.3 | N15—N14—Ni2 | 117.06 (19) |
C5—C6—H6 | 127.3 | C22—N15—N14 | 111.0 (3) |
N4—C7—C6 | 107.0 (3) | C22—N15—C23 | 129.3 (3) |
N4—C7—H7 | 126.5 | N14—N15—C23 | 119.7 (3) |
C6—C7—H7 | 126.5 | N14—C20—C21 | 111.0 (3) |
C8—N5—N6 | 105.1 (3) | N14—C20—H20 | 124.5 |
C8—N5—Ni1 | 136.0 (2) | C21—C20—H20 | 124.5 |
N6—N5—Ni1 | 118.8 (2) | C22—C21—C20 | 106.2 (3) |
N5—N6—C10 | 111.5 (3) | C22—C21—H21 | 126.9 |
N5—N6—C1 | 119.8 (3) | C20—C21—H21 | 126.9 |
C10—N6—C1 | 128.5 (3) | N15—C22—C21 | 106.6 (3) |
N5—C8—C9 | 111.2 (3) | N15—C22—H22 | 126.7 |
N5—C8—H8 | 124.4 | C21—C22—H22 | 126.7 |
C9—C8—H8 | 124.4 | N15—C23—N13i | 110.5 (3) |
C10—C9—C8 | 105.5 (3) | N15—C23—N11i | 110.8 (3) |
C10—C9—H9 | 127.2 | N13i—C23—N11i | 110.3 (3) |
C8—C9—H9 | 127.2 | N15—C23—H23 | 108.4 |
N6—C10—C9 | 106.6 (3) | N13i—C23—H23 | 108.4 |
N6—C10—H10 | 126.7 | N11i—C23—H23 | 108.4 |
C9—C10—H10 | 126.7 | C1S—O1S—H1S | 109.5 |
C11—N7—Ni1 | 147.0 (3) | O1S—C1S—H1S1 | 109.5 |
N7—C11—S1 | 177.7 (3) | O1S—C1S—H1S2 | 109.5 |
C12—N8—Ni1 | 170.1 (3) | H1S1—C1S—H1S2 | 109.5 |
N8—C12—S2 | 177.7 (3) | O1S—C1S—H1S3 | 109.5 |
C13—N9—Ni1 | 144.9 (4) | H1S1—C1S—H1S3 | 109.5 |
N9—C13—S3 | 178.5 (5) | H1S2—C1S—H1S3 | 109.5 |
N14i—Ni2—N14 | 180.00 (10) | ||
N8—Ni1—N1—C2 | −54.5 (3) | N8—Ni1—N7—C11 | −174.3 (5) |
N7—Ni1—N1—C2 | 38.3 (3) | N9—Ni1—N7—C11 | −81.8 (5) |
N5—Ni1—N1—C2 | −147.3 (3) | N1—Ni1—N7—C11 | 92.3 (5) |
N3—Ni1—N1—C2 | 128.1 (3) | N3—Ni1—N7—C11 | 9.8 (5) |
N8—Ni1—N1—N2 | 133.0 (2) | N8—Ni1—N9—C13 | −83.5 (6) |
N7—Ni1—N1—N2 | −134.1 (2) | N7—Ni1—N9—C13 | −176.4 (6) |
N5—Ni1—N1—N2 | 40.2 (2) | N5—Ni1—N9—C13 | 9.5 (6) |
N3—Ni1—N1—N2 | −44.4 (2) | N3—Ni1—N9—C13 | 93.6 (6) |
C2—N1—N2—C4 | −0.2 (4) | N14i—Ni2—N10—C14 | −135.9 (3) |
Ni1—N1—N2—C4 | 174.3 (2) | N14—Ni2—N10—C14 | 44.1 (3) |
C2—N1—N2—C1 | −173.8 (3) | N12i—Ni2—N10—C14 | −40.9 (3) |
Ni1—N1—N2—C1 | 0.7 (4) | N12—Ni2—N10—C14 | 139.1 (3) |
N6—C1—N2—C4 | 127.4 (3) | N14i—Ni2—N10—N11 | 41.9 (2) |
N4—C1—N2—C4 | −111.5 (4) | N14—Ni2—N10—N11 | −138.1 (2) |
N6—C1—N2—N1 | −60.1 (4) | N12i—Ni2—N10—N11 | 136.9 (2) |
N4—C1—N2—N1 | 61.0 (4) | N12—Ni2—N10—N11 | −43.1 (2) |
N2—N1—C2—C3 | −0.3 (4) | C14—N10—N11—C16 | 0.3 (3) |
Ni1—N1—C2—C3 | −173.5 (2) | Ni2—N10—N11—C16 | −178.1 (2) |
N1—C2—C3—C4 | 0.6 (4) | C14—N10—N11—C23i | 179.5 (3) |
N1—N2—C4—C3 | 0.5 (4) | Ni2—N10—N11—C23i | 1.0 (3) |
C1—N2—C4—C3 | 173.5 (3) | N11—N10—C14—C15 | −0.2 (4) |
C2—C3—C4—N2 | −0.7 (4) | Ni2—N10—C14—C15 | 177.8 (2) |
N7—Ni1—N3—C5 | −38.7 (3) | N10—C14—C15—C16 | 0.0 (4) |
N9—Ni1—N3—C5 | 53.3 (4) | N10—N11—C16—C15 | −0.3 (4) |
N1—Ni1—N3—C5 | −130.4 (3) | C23i—N11—C16—C15 | −179.4 (3) |
N5—Ni1—N3—C5 | 143.5 (3) | C14—C15—C16—N11 | 0.1 (4) |
N7—Ni1—N3—N4 | 137.9 (2) | N14i—Ni2—N12—C19 | 144.3 (4) |
N9—Ni1—N3—N4 | −130.0 (2) | N14—Ni2—N12—C19 | −35.7 (4) |
N1—Ni1—N3—N4 | 46.2 (2) | N10i—Ni2—N12—C19 | 50.7 (4) |
N5—Ni1—N3—N4 | −39.8 (2) | N10—Ni2—N12—C19 | −129.3 (4) |
C5—N3—N4—C7 | 0.0 (4) | N14i—Ni2—N12—N13 | −45.7 (2) |
Ni1—N3—N4—C7 | −177.6 (2) | N14—Ni2—N12—N13 | 134.3 (2) |
C5—N3—N4—C1 | 173.4 (3) | N10i—Ni2—N12—N13 | −139.3 (2) |
Ni1—N3—N4—C1 | −4.3 (4) | N10—Ni2—N12—N13 | 40.7 (2) |
N6—C1—N4—C7 | −124.3 (4) | C19—N12—N13—C17 | 0.7 (4) |
N2—C1—N4—C7 | 114.0 (4) | Ni2—N12—N13—C17 | −172.2 (2) |
N6—C1—N4—N3 | 63.7 (4) | C19—N12—N13—C23i | 176.2 (3) |
N2—C1—N4—N3 | −58.1 (4) | Ni2—N12—N13—C23i | 3.3 (3) |
N4—N3—C5—C6 | 0.5 (4) | N12—N13—C17—C18 | −1.0 (4) |
Ni1—N3—C5—C6 | 177.4 (3) | C23i—N13—C17—C18 | −176.0 (3) |
N3—C5—C6—C7 | −0.8 (4) | N13—C17—C18—C19 | 0.9 (4) |
N3—N4—C7—C6 | −0.5 (4) | N13—N12—C19—C18 | −0.1 (4) |
C1—N4—C7—C6 | −173.1 (3) | Ni2—N12—C19—C18 | 170.7 (3) |
C5—C6—C7—N4 | 0.8 (4) | C17—C18—C19—N12 | −0.5 (4) |
N8—Ni1—N5—C8 | 50.3 (4) | N12i—Ni2—N14—C20 | 138.3 (3) |
N9—Ni1—N5—C8 | −42.1 (4) | N12—Ni2—N14—C20 | −41.7 (3) |
N1—Ni1—N5—C8 | 143.4 (4) | N10i—Ni2—N14—C20 | −135.6 (3) |
N3—Ni1—N5—C8 | −133.7 (4) | N10—Ni2—N14—C20 | 44.4 (3) |
N8—Ni1—N5—N6 | −132.6 (3) | N12i—Ni2—N14—N15 | −43.9 (2) |
N9—Ni1—N5—N6 | 135.0 (3) | N12—Ni2—N14—N15 | 136.1 (2) |
N1—Ni1—N5—N6 | −39.5 (2) | N10i—Ni2—N14—N15 | 42.2 (2) |
N3—Ni1—N5—N6 | 43.4 (2) | N10—Ni2—N14—N15 | −137.8 (2) |
C8—N5—N6—C10 | 0.3 (4) | C20—N14—N15—C22 | 0.7 (3) |
Ni1—N5—N6—C10 | −177.6 (2) | Ni2—N14—N15—C22 | −177.7 (2) |
C8—N5—N6—C1 | 175.6 (3) | C20—N14—N15—C23 | 178.6 (3) |
Ni1—N5—N6—C1 | −2.3 (4) | Ni2—N14—N15—C23 | 0.2 (3) |
N4—C1—N6—N5 | −59.9 (4) | N15—N14—C20—C21 | −0.3 (4) |
N2—C1—N6—N5 | 60.9 (4) | Ni2—N14—C20—C21 | 177.6 (3) |
N4—C1—N6—C10 | 114.5 (4) | N14—C20—C21—C22 | −0.2 (4) |
N2—C1—N6—C10 | −124.6 (4) | N14—N15—C22—C21 | −0.8 (4) |
N6—N5—C8—C9 | −0.1 (4) | C23—N15—C22—C21 | −178.5 (3) |
Ni1—N5—C8—C9 | 177.3 (3) | C20—C21—C22—N15 | 0.6 (4) |
N5—C8—C9—C10 | −0.1 (4) | C22—N15—C23—N13i | −121.3 (3) |
N5—N6—C10—C9 | −0.4 (4) | N14—N15—C23—N13i | 61.3 (4) |
C1—N6—C10—C9 | −175.1 (3) | C22—N15—C23—N11i | 116.3 (4) |
C8—C9—C10—N6 | 0.3 (4) | N14—N15—C23—N11i | −61.2 (4) |
Symmetry code: (i) −x+1/2, −y+3/2, −z+1. |
D—H···A | D—H | H···A | D···A | D—H···A |
O1S—H1S···S3ii | 0.84 | 2.43 | 3.267 (4) | 175 |
O1S—H1S···S3′ii | 0.84 | 2.88 | 3.459 (6) | 128 |
C23—H23···O1S | 1.00 | 2.15 | 3.118 (4) | 162 |
Symmetry code: (ii) x−1/2, −y+1/2, z−1/2. |
Experimental details
Crystal data | |
Chemical formula | [Ni(C10H10N6)2][Ni(NCS)3(C10H10N6)]2·2CH4O |
Mr | 1445.65 |
Crystal system, space group | Monoclinic, C2/c |
Temperature (K) | 90 |
a, b, c (Å) | 33.4463 (8), 7.3287 (2), 27.2689 (7) |
β (°) | 112.590 (1) |
V (Å3) | 6171.3 (3) |
Z | 4 |
Radiation type | Cu Kα |
µ (mm−1) | 3.52 |
Crystal size (mm) | 0.20 × 0.06 × 0.02 |
Data collection | |
Diffractometer | Bruker X8 Proteum |
Absorption correction | Multi-scan (SADABS in APEX2; Bruker, 2006) |
Tmin, Tmax | 0.740, 0.933 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 41685, 5605, 4932 |
Rint | 0.061 |
(sin θ/λ)max (Å−1) | 0.601 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.049, 0.128, 1.11 |
No. of reflections | 5605 |
No. of parameters | 418 |
No. of restraints | 6 |
H-atom treatment | H-atom parameters constrained |
w = 1/[σ2(Fo2) + (0.0515P)2 + 28.6001P] where P = (Fo2 + 2Fc2)/3 | |
Δρmax, Δρmin (e Å−3) | 1.34, −0.44 |
Computer programs: APEX2 (Bruker, 2006), SAINT (Bruker, 2006), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), XP in SHELXTL (Sheldrick, 2008), SHELX97 (Sheldrick, 2008) and local procedures.
D—H···A | D—H | H···A | D···A | D—H···A |
O1S—H1S···S3i | 0.84 | 2.43 | 3.267 (4) | 175.2 |
O1S—H1S···S3'i | 0.84 | 2.88 | 3.459 (6) | 128.2 |
C23—H23···O1S | 1.00 | 2.15 | 3.118 (4) | 161.5 |
Symmetry code: (i) x−1/2, −y+1/2, z−1/2. |
Acknowledgements
GL gratefully acknowledges Southern Arkansas University for the financial support.
References
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Tripodal ligands with three pyrazolyl groups are increasingly being used in small-molecule modeling of the active sites of metallo-enzymes in which the metal is coordinated to two or three imidazole groups from histidine (Kitajima et al. 1992, Trofimenko et al. 1992, Looney et al. 1992, Looney & Parkin 1994). One of the goals of this research is to explore the chemistry of the neutral ligand tris(pyrazol-1-yl)methane compared to the more extensively studied isoelectronic but anionic ligand tris(pyrazol-1-yl)borate. In attempts to prepare mononuclear [(tpm)NiIIL3]-1 , where tpm is tris(pyrazol-1-yl)methane, a symmetrical tripodal neutral nitrogen donor ligand, and L is NCS-, a uninegative N-donor pseudohalide anion, we obtained [(tpm)2NiII][(tpm)NiII(NCS)3]2.2CH3OH as blue monoclinic crystals in 57% isolated yield. The structure consists of centrosymmetric [bis[tris(1-pyrazolyl)methane-κ3]-nickel(II) cations, with NiII—N distances ranging from 2.077 (2) to 2.082 (2) Å. The intraligand N—Ni—N angles in the cation range from 85.81 (10) to 95.27 (10)°, which introduces a slight trigonal distortion from perfect octahedral geometry. The anion consists of nickellate (II) atom surrounded octahedrally by one tripodal tris(pyrazol-1-yl)methane ligand and three isothiocyanate ligands. The tpm ligand N—Ni distances range from 2.080 (3) to 2.119 (3) Å, and the isothiocyanate N—Ni distances range from 2.046 (3) to 2.070 (3) Å.