organic compounds
Methyl 5-(4-hydroxy-3-methoxyphenyl)-2-(4-methoxybenzylidene)-7-methyl-3-oxo-2,3-dihydro-5H-thiazolo[3,2-a]pyrimidine-6-carboxylate
aDepartment of Studies in Chemistry, Bangalore University, Bangalore 560 001, India
*Correspondence e-mail: noorsb@rediffmail.com
In the title compound, C24H22N2O6S, a pyrimidine ring substituted with 4-hydroxy-3-methoxyphenyl is fused with a thiazole ring. The 4-hydroxy-3-methoxyphenyl group is positioned axially to the pyrimidine ring, making a dihedral angle 85.36 (7)°. The pyrimidine ring adopts a twist boat conformation. In the crystal, O—H⋯N interactions result in a chain running along the b axis. The carbonyl O atom bonded to the thiazole ring is involved in two C—H⋯O hydrogen-bond interactions forming centrosymmetric dimers; the ten- and six-membered rings resulting from these interactions have R22(10) and R12(6) motifs, respectively.
Related literature
For pharmacological properties of pyrimidine derivatives, see: Alam et al. (2010). For related structures, see: Jotani et al. (2010). For graph-set motifs, see: Bernstein et al. (1995).
Experimental
Crystal data
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Refinement
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Data collection: SMART (Bruker, 1998); cell SAINT-Plus (Bruker, 1998); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997) and CAMERON (Watkin et al., 1996); software used to prepare material for publication: WinGX (Farrugia, 1999).
Supporting information
https://doi.org/10.1107/S1600536811048987/pv2473sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536811048987/pv2473Isup2.hkl
Supporting information file. DOI: https://doi.org/10.1107/S1600536811048987/pv2473Isup3.cml
A mixture of 4-(4-hydroxy-3-methoxy-phenyl)-6-methyl-2-thioxo-1,2,3,4-tetrahydro -pyrimidine-5-carboxylic acid methyl ester (0.01 mol), chloroaceticacid (0.01 mol), 4-methoxy benzaldehyde (0.01 mol) and sodium acetate (1.5 g) in a mixture of glacial acetic acid and acetic anhydride (25 ml; 1:1) was refluxed for 8–10 h.The reaction mixture was concentrated and the solid thus obtained was filtered and recrystallized from ethyl acetate to get the title compound. (78% yield, mp 427 K). The compound was recrystallized by slow evaporation of an ethyl acetate-ethanol (3:2) solution, yielding pale yellow single crystals suitable for X-ray diffraction studies.
The H atoms were placed at calculated positions in the riding model approximation with O—H = 0.820 Å and C—H = 0.93, 0.96, 0.98 Å, for aryl, methyl and methyne H-atoms, respectively, with Uiso(H) = 1.5Ueq(C) for methyl H atoms and 1.2Ueq(C/O) for other H atoms.
Pyrimidine derivatives are of interest because of their pharmacological properties (Alam et al., 2010).
The central pyrimidine ring with a chiral C5 atom is significantly puckered and adopts a conformation which is best described as an intermediate between a boat and a screw boat form as seen earlier (Jotani et al., 2010). The atoms C5 and N1 deviate from the mean plane C6/C7/N2/C8 by 0.1024 (3) and -0.0602 (3) Å, respectively, indicating that the conformation of the pyrimidine ring is that of a twisted boat. In the molecule, The fused thiazole-pyrimidine ring is coplanar with benzylidene ring with dihedral angle 5.19 (7)°. The dihedral angle between the thiazolopyrimidine ring and 4-hydroxy-3-methoxy-phenyl group is 85.36 (7)°. The
is stabilized by a strong intermolecular O—H···N hydrogen bond resulting in a one dimensional chain of molecules along the b axis. The structure is further consolidated by C—H···O type intermolecular interactions, involving carbonyl O2 atom, forming centrosymmetric dimers; the ten and 6 membered rings thus resulting from these interactions can be described as R22(10) and R21(6) motifs in graph-set notations (Bernstein et al., 1995).For pharmacological properties of pyrimidine derivatives, see: Alam et al. (2010). For related structures, see: Jotani et al. (2010). For graph-set motifs, see: Bernstein et al. (1995).
Data collection: SMART (Bruker, 1998); cell
SAINT-Plus (Bruker, 1998); data reduction: SAINT-Plus (Bruker, 1998); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997) and CAMERON (Watkin et al., 1996); software used to prepare material for publication: WinGX (Farrugia, 1999).C24H22N2O6S | V = 1082.1 (3) Å3 |
Mr = 466.50 | Z = 2 |
Triclinic, P1 | F(000) = 488 |
Hall symbol: -P 1 | Dx = 1.432 Mg m−3 |
a = 6.8096 (12) Å | Mo Kα radiation, λ = 0.71073 Å |
b = 9.9343 (18) Å | µ = 0.20 mm−1 |
c = 16.246 (3) Å | T = 296 K |
α = 86.816 (3)° | Block, yellow |
β = 85.588 (3)° | 0.18 × 0.16 × 0.16 mm |
γ = 81.318 (3)° |
Bruker SMART APEX CCD detector diffractometer | 4581 independent reflections |
Radiation source: fine-focus sealed tube | 3452 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.018 |
ω scans | θmax = 27.0°, θmin = 2.1° |
Absorption correction: multi-scan (SADABS; Bruker, 1998) | h = −8→8 |
Tmin = 0.966, Tmax = 0.969 | k = −12→10 |
6570 measured reflections | l = −20→20 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.069 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.279 | H-atom parameters constrained |
S = 1.33 | w = 1/[σ2(Fo2) + (0.1558P)2] where P = (Fo2 + 2Fc2)/3 |
4581 reflections | (Δ/σ)max < 0.001 |
303 parameters | Δρmax = 0.69 e Å−3 |
0 restraints | Δρmin = −0.62 e Å−3 |
C24H22N2O6S | γ = 81.318 (3)° |
Mr = 466.50 | V = 1082.1 (3) Å3 |
Triclinic, P1 | Z = 2 |
a = 6.8096 (12) Å | Mo Kα radiation |
b = 9.9343 (18) Å | µ = 0.20 mm−1 |
c = 16.246 (3) Å | T = 296 K |
α = 86.816 (3)° | 0.18 × 0.16 × 0.16 mm |
β = 85.588 (3)° |
Bruker SMART APEX CCD detector diffractometer | 4581 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 1998) | 3452 reflections with I > 2σ(I) |
Tmin = 0.966, Tmax = 0.969 | Rint = 0.018 |
6570 measured reflections |
R[F2 > 2σ(F2)] = 0.069 | 0 restraints |
wR(F2) = 0.279 | H-atom parameters constrained |
S = 1.33 | Δρmax = 0.69 e Å−3 |
4581 reflections | Δρmin = −0.62 e Å−3 |
303 parameters |
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
S1 | 0.15410 (13) | 0.32220 (9) | 0.29148 (5) | 0.0312 (3) | |
O6 | 0.0905 (4) | −0.4233 (2) | 0.13814 (16) | 0.0352 (6) | |
H6 | 0.0110 | −0.4779 | 0.1447 | 0.053* | |
O2 | −0.1068 (4) | 0.0292 (2) | 0.39078 (14) | 0.0314 (6) | |
N1 | −0.1155 (4) | 0.1703 (3) | 0.27435 (16) | 0.0257 (6) | |
O3 | −0.6100 (4) | 0.0792 (3) | 0.16436 (16) | 0.0372 (6) | |
N2 | −0.0791 (5) | 0.3389 (3) | 0.16660 (17) | 0.0299 (7) | |
O1 | 0.8821 (4) | 0.3698 (3) | 0.54235 (17) | 0.0415 (7) | |
C6 | −0.3314 (5) | 0.1959 (3) | 0.15964 (19) | 0.0263 (7) | |
O5 | −0.2673 (4) | −0.3960 (2) | 0.22167 (17) | 0.0365 (6) | |
C5 | −0.2615 (5) | 0.1047 (3) | 0.2339 (2) | 0.0276 (7) | |
H5 | −0.3765 | 0.0977 | 0.2733 | 0.033* | |
C19 | −0.2694 (5) | −0.1507 (3) | 0.2295 (2) | 0.0276 (7) | |
H19 | −0.3925 | −0.1391 | 0.2593 | 0.033* | |
O4 | −0.5284 (4) | 0.1916 (3) | 0.04588 (15) | 0.0465 (8) | |
C21 | 0.0002 (5) | −0.2994 (3) | 0.1616 (2) | 0.0288 (7) | |
C18 | −0.1708 (5) | −0.0377 (3) | 0.20939 (19) | 0.0264 (7) | |
C3 | −0.0444 (5) | 0.1214 (3) | 0.3500 (2) | 0.0281 (7) | |
C12 | 0.4787 (5) | 0.1626 (4) | 0.5346 (2) | 0.0298 (7) | |
H12 | 0.4232 | 0.0936 | 0.5647 | 0.036* | |
C8 | −0.0300 (5) | 0.2758 (3) | 0.2354 (2) | 0.0281 (7) | |
C20 | −0.1849 (5) | −0.2791 (3) | 0.20538 (19) | 0.0271 (7) | |
C22 | 0.0966 (5) | −0.1868 (3) | 0.1404 (2) | 0.0313 (8) | |
H22 | 0.2194 | −0.1982 | 0.1103 | 0.038* | |
C2 | 0.1203 (5) | 0.1940 (3) | 0.3687 (2) | 0.0297 (7) | |
C10 | 0.2243 (5) | 0.1629 (3) | 0.4359 (2) | 0.0276 (7) | |
H10 | 0.1809 | 0.0946 | 0.4709 | 0.033* | |
C11 | 0.3928 (5) | 0.2179 (4) | 0.4631 (2) | 0.0315 (8) | |
C7 | −0.2434 (5) | 0.3037 (3) | 0.1307 (2) | 0.0284 (7) | |
C14 | 0.7248 (5) | 0.3131 (4) | 0.5199 (2) | 0.0321 (8) | |
C23 | 0.0097 (5) | −0.0576 (4) | 0.1639 (2) | 0.0324 (8) | |
H23 | 0.0747 | 0.0168 | 0.1487 | 0.039* | |
C13 | 0.6444 (5) | 0.2068 (4) | 0.5625 (2) | 0.0335 (8) | |
H13 | 0.7015 | 0.1654 | 0.6095 | 0.040* | |
C1 | −0.3048 (6) | 0.4018 (4) | 0.0603 (2) | 0.0382 (9) | |
H1A | −0.2234 | 0.3761 | 0.0112 | 0.057* | |
H1B | −0.2881 | 0.4922 | 0.0735 | 0.057* | |
H1C | −0.4419 | 0.3997 | 0.0514 | 0.057* | |
C4 | −0.5039 (5) | 0.1509 (4) | 0.1248 (2) | 0.0321 (8) | |
C15 | 0.6422 (6) | 0.3702 (4) | 0.4484 (2) | 0.0405 (9) | |
H15 | 0.6966 | 0.4408 | 0.4194 | 0.049* | |
C17 | 0.9714 (6) | 0.3169 (4) | 0.6163 (2) | 0.0397 (9) | |
H17A | 0.8779 | 0.3364 | 0.6630 | 0.060* | |
H17B | 1.0875 | 0.3587 | 0.6223 | 0.060* | |
H17C | 1.0090 | 0.2201 | 0.6135 | 0.060* | |
C16 | 0.4802 (6) | 0.3238 (4) | 0.4194 (2) | 0.0375 (9) | |
H16 | 0.4281 | 0.3623 | 0.3708 | 0.045* | |
C24 | −0.4702 (6) | −0.3847 (4) | 0.2508 (3) | 0.0441 (10) | |
H24A | −0.4846 | −0.3583 | 0.3071 | 0.066* | |
H24B | −0.5158 | −0.4710 | 0.2476 | 0.066* | |
H24C | −0.5479 | −0.3171 | 0.2173 | 0.066* | |
C9 | −0.7019 (7) | 0.1526 (6) | 0.0106 (3) | 0.0592 (14) | |
H9A | −0.7048 | 0.0570 | 0.0218 | 0.089* | |
H9B | −0.6936 | 0.1714 | −0.0480 | 0.089* | |
H9C | −0.8212 | 0.2037 | 0.0349 | 0.089* |
U11 | U22 | U33 | U12 | U13 | U23 | |
S1 | 0.0364 (5) | 0.0289 (5) | 0.0312 (5) | −0.0120 (4) | −0.0098 (4) | 0.0032 (3) |
O6 | 0.0355 (14) | 0.0286 (13) | 0.0421 (15) | −0.0088 (10) | 0.0013 (11) | −0.0022 (11) |
O2 | 0.0380 (14) | 0.0306 (13) | 0.0281 (12) | −0.0132 (11) | −0.0077 (10) | 0.0057 (10) |
N1 | 0.0267 (15) | 0.0245 (14) | 0.0270 (14) | −0.0077 (11) | −0.0056 (11) | 0.0039 (11) |
O3 | 0.0300 (14) | 0.0459 (16) | 0.0385 (14) | −0.0149 (12) | −0.0089 (11) | 0.0070 (12) |
N2 | 0.0384 (17) | 0.0251 (15) | 0.0287 (15) | −0.0107 (12) | −0.0077 (12) | 0.0000 (11) |
O1 | 0.0365 (15) | 0.0447 (16) | 0.0481 (16) | −0.0150 (12) | −0.0171 (12) | −0.0011 (13) |
C6 | 0.0282 (17) | 0.0274 (17) | 0.0242 (16) | −0.0065 (13) | −0.0064 (13) | 0.0047 (13) |
O5 | 0.0351 (14) | 0.0282 (13) | 0.0480 (15) | −0.0142 (11) | 0.0049 (11) | −0.0023 (11) |
C5 | 0.0259 (17) | 0.0287 (17) | 0.0308 (17) | −0.0114 (13) | −0.0068 (13) | 0.0036 (13) |
C19 | 0.0250 (17) | 0.0305 (18) | 0.0296 (17) | −0.0111 (13) | −0.0034 (13) | 0.0005 (13) |
O4 | 0.0453 (17) | 0.070 (2) | 0.0309 (14) | −0.0285 (15) | −0.0194 (12) | 0.0146 (13) |
C21 | 0.0297 (18) | 0.0279 (17) | 0.0298 (17) | −0.0072 (13) | −0.0065 (13) | 0.0030 (13) |
C18 | 0.0270 (17) | 0.0288 (17) | 0.0250 (16) | −0.0072 (13) | −0.0089 (12) | 0.0029 (13) |
C3 | 0.0309 (18) | 0.0264 (17) | 0.0276 (17) | −0.0049 (14) | −0.0067 (13) | 0.0002 (13) |
C12 | 0.0302 (18) | 0.0326 (18) | 0.0280 (17) | −0.0071 (14) | −0.0057 (13) | −0.0014 (14) |
C8 | 0.0279 (18) | 0.0255 (16) | 0.0308 (17) | −0.0032 (13) | −0.0015 (13) | −0.0030 (13) |
C20 | 0.0340 (19) | 0.0248 (17) | 0.0253 (16) | −0.0122 (14) | −0.0055 (13) | 0.0009 (13) |
C22 | 0.0272 (18) | 0.0269 (18) | 0.0398 (19) | −0.0058 (13) | −0.0019 (14) | 0.0028 (14) |
C2 | 0.0319 (19) | 0.0269 (17) | 0.0324 (17) | −0.0098 (14) | −0.0022 (14) | −0.0064 (14) |
C10 | 0.0296 (18) | 0.0292 (18) | 0.0258 (16) | −0.0086 (14) | −0.0056 (13) | −0.0011 (13) |
C11 | 0.0317 (19) | 0.0308 (18) | 0.0329 (18) | −0.0074 (14) | −0.0018 (14) | −0.0001 (14) |
C7 | 0.0281 (18) | 0.0276 (17) | 0.0303 (17) | −0.0035 (13) | −0.0096 (13) | 0.0007 (13) |
C14 | 0.0293 (19) | 0.0285 (18) | 0.0396 (19) | −0.0040 (14) | −0.0073 (14) | −0.0034 (15) |
C23 | 0.0272 (18) | 0.0298 (18) | 0.043 (2) | −0.0118 (14) | −0.0066 (14) | 0.0030 (15) |
C13 | 0.0300 (19) | 0.0342 (19) | 0.0354 (19) | 0.0006 (14) | −0.0067 (14) | −0.0023 (15) |
C1 | 0.047 (2) | 0.0300 (19) | 0.039 (2) | −0.0091 (16) | −0.0150 (17) | 0.0093 (16) |
C4 | 0.0279 (18) | 0.0346 (19) | 0.0338 (18) | −0.0040 (14) | −0.0063 (14) | 0.0029 (15) |
C15 | 0.040 (2) | 0.039 (2) | 0.046 (2) | −0.0174 (17) | −0.0140 (17) | 0.0082 (17) |
C17 | 0.034 (2) | 0.049 (2) | 0.039 (2) | −0.0080 (17) | −0.0112 (16) | −0.0030 (17) |
C16 | 0.044 (2) | 0.0294 (19) | 0.041 (2) | −0.0110 (16) | −0.0120 (17) | 0.0061 (15) |
C24 | 0.035 (2) | 0.034 (2) | 0.063 (3) | −0.0134 (16) | 0.0078 (18) | −0.0012 (18) |
C9 | 0.048 (3) | 0.095 (4) | 0.042 (2) | −0.032 (3) | −0.021 (2) | 0.017 (2) |
S1—C8 | 1.735 (3) | C12—C13 | 1.387 (5) |
S1—C2 | 1.765 (4) | C12—C11 | 1.388 (5) |
O6—C21 | 1.352 (4) | C12—H12 | 0.9300 |
O6—H6 | 0.8200 | C22—C23 | 1.391 (5) |
O2—C3 | 1.210 (4) | C22—H22 | 0.9300 |
N1—C8 | 1.376 (4) | C2—C10 | 1.343 (5) |
N1—C3 | 1.391 (4) | C10—C11 | 1.451 (4) |
N1—C5 | 1.479 (4) | C10—H10 | 0.9300 |
O3—C4 | 1.215 (4) | C11—C16 | 1.416 (5) |
N2—C8 | 1.292 (4) | C7—C1 | 1.503 (5) |
N2—C7 | 1.398 (4) | C14—C15 | 1.386 (5) |
O1—C14 | 1.364 (4) | C14—C13 | 1.389 (5) |
O1—C17 | 1.427 (4) | C23—H23 | 0.9300 |
C6—C7 | 1.350 (5) | C13—H13 | 0.9300 |
C6—C4 | 1.479 (5) | C1—H1A | 0.9600 |
C6—C5 | 1.530 (4) | C1—H1B | 0.9600 |
O5—C20 | 1.369 (4) | C1—H1C | 0.9600 |
O5—C24 | 1.416 (4) | C15—C16 | 1.382 (5) |
C5—C18 | 1.518 (5) | C15—H15 | 0.9300 |
C5—H5 | 0.9800 | C17—H17A | 0.9600 |
C19—C20 | 1.382 (5) | C17—H17B | 0.9600 |
C19—C18 | 1.404 (4) | C17—H17C | 0.9600 |
C19—H19 | 0.9300 | C16—H16 | 0.9300 |
O4—C4 | 1.338 (4) | C24—H24A | 0.9600 |
O4—C9 | 1.463 (4) | C24—H24B | 0.9600 |
C21—C20 | 1.392 (5) | C24—H24C | 0.9600 |
C21—C22 | 1.395 (4) | C9—H9A | 0.9600 |
C18—C23 | 1.378 (5) | C9—H9B | 0.9600 |
C3—C2 | 1.480 (4) | C9—H9C | 0.9600 |
C8—S1—C2 | 91.56 (16) | C12—C11—C16 | 117.3 (3) |
C21—O6—H6 | 109.5 | C12—C11—C10 | 119.2 (3) |
C8—N1—C3 | 116.4 (3) | C16—C11—C10 | 123.6 (3) |
C8—N1—C5 | 121.3 (3) | C6—C7—N2 | 121.8 (3) |
C3—N1—C5 | 122.1 (3) | C6—C7—C1 | 127.0 (3) |
C8—N2—C7 | 117.4 (3) | N2—C7—C1 | 111.2 (3) |
C14—O1—C17 | 117.6 (3) | O1—C14—C15 | 115.0 (3) |
C7—C6—C4 | 125.2 (3) | O1—C14—C13 | 125.7 (3) |
C7—C6—C5 | 122.9 (3) | C15—C14—C13 | 119.3 (3) |
C4—C6—C5 | 111.8 (3) | C18—C23—C22 | 121.2 (3) |
C20—O5—C24 | 118.5 (3) | C18—C23—H23 | 119.4 |
N1—C5—C18 | 110.5 (3) | C22—C23—H23 | 119.4 |
N1—C5—C6 | 108.4 (2) | C12—C13—C14 | 119.7 (3) |
C18—C5—C6 | 112.2 (3) | C12—C13—H13 | 120.2 |
N1—C5—H5 | 108.6 | C14—C13—H13 | 120.2 |
C18—C5—H5 | 108.6 | C7—C1—H1A | 109.5 |
C6—C5—H5 | 108.6 | C7—C1—H1B | 109.5 |
C20—C19—C18 | 120.5 (3) | H1A—C1—H1B | 109.5 |
C20—C19—H19 | 119.8 | C7—C1—H1C | 109.5 |
C18—C19—H19 | 119.8 | H1A—C1—H1C | 109.5 |
C4—O4—C9 | 115.8 (3) | H1B—C1—H1C | 109.5 |
O6—C21—C20 | 123.0 (3) | O3—C4—O4 | 123.1 (3) |
O6—C21—C22 | 118.4 (3) | O3—C4—C6 | 122.2 (3) |
C20—C21—C22 | 118.6 (3) | O4—C4—C6 | 114.6 (3) |
C23—C18—C19 | 118.5 (3) | C16—C15—C14 | 121.0 (3) |
C23—C18—C5 | 119.9 (3) | C16—C15—H15 | 119.5 |
C19—C18—C5 | 121.6 (3) | C14—C15—H15 | 119.5 |
O2—C3—N1 | 123.1 (3) | O1—C17—H17A | 109.5 |
O2—C3—C2 | 127.1 (3) | O1—C17—H17B | 109.5 |
N1—C3—C2 | 109.7 (3) | H17A—C17—H17B | 109.5 |
C13—C12—C11 | 122.2 (3) | O1—C17—H17C | 109.5 |
C13—C12—H12 | 118.9 | H17A—C17—H17C | 109.5 |
C11—C12—H12 | 118.9 | H17B—C17—H17C | 109.5 |
N2—C8—N1 | 126.2 (3) | C15—C16—C11 | 120.5 (3) |
N2—C8—S1 | 121.8 (3) | C15—C16—H16 | 119.7 |
N1—C8—S1 | 112.0 (2) | C11—C16—H16 | 119.7 |
O5—C20—C19 | 125.4 (3) | O5—C24—H24A | 109.5 |
O5—C20—C21 | 113.7 (3) | O5—C24—H24B | 109.5 |
C19—C20—C21 | 120.9 (3) | H24A—C24—H24B | 109.5 |
C23—C22—C21 | 120.2 (3) | O5—C24—H24C | 109.5 |
C23—C22—H22 | 119.9 | H24A—C24—H24C | 109.5 |
C21—C22—H22 | 119.9 | H24B—C24—H24C | 109.5 |
C10—C2—C3 | 122.8 (3) | O4—C9—H9A | 109.5 |
C10—C2—S1 | 126.9 (3) | O4—C9—H9B | 109.5 |
C3—C2—S1 | 110.3 (2) | H9A—C9—H9B | 109.5 |
C2—C10—C11 | 131.0 (3) | O4—C9—H9C | 109.5 |
C2—C10—H10 | 114.5 | H9A—C9—H9C | 109.5 |
C11—C10—H10 | 114.5 | H9B—C9—H9C | 109.5 |
C8—N1—C5—C18 | 108.8 (3) | N1—C3—C2—C10 | −176.5 (3) |
C3—N1—C5—C18 | −65.4 (4) | O2—C3—C2—S1 | −179.2 (3) |
C8—N1—C5—C6 | −14.4 (4) | N1—C3—C2—S1 | 3.7 (4) |
C3—N1—C5—C6 | 171.3 (3) | C8—S1—C2—C10 | 177.4 (3) |
C7—C6—C5—N1 | 10.4 (5) | C8—S1—C2—C3 | −2.8 (3) |
C4—C6—C5—N1 | −169.6 (3) | C3—C2—C10—C11 | 177.5 (3) |
C7—C6—C5—C18 | −111.9 (4) | S1—C2—C10—C11 | −2.7 (6) |
C4—C6—C5—C18 | 68.1 (4) | C13—C12—C11—C16 | −0.6 (6) |
C20—C19—C18—C23 | 1.1 (5) | C13—C12—C11—C10 | 177.6 (3) |
C20—C19—C18—C5 | 179.0 (3) | C2—C10—C11—C12 | −177.3 (4) |
N1—C5—C18—C23 | −51.6 (4) | C2—C10—C11—C16 | 0.8 (6) |
C6—C5—C18—C23 | 69.4 (4) | C4—C6—C7—N2 | −179.3 (3) |
N1—C5—C18—C19 | 130.5 (3) | C5—C6—C7—N2 | 0.7 (5) |
C6—C5—C18—C19 | −108.4 (3) | C4—C6—C7—C1 | 2.2 (6) |
C8—N1—C3—O2 | 179.9 (3) | C5—C6—C7—C1 | −177.8 (3) |
C5—N1—C3—O2 | −5.6 (5) | C8—N2—C7—C6 | −9.0 (5) |
C8—N1—C3—C2 | −2.9 (4) | C8—N2—C7—C1 | 169.7 (3) |
C5—N1—C3—C2 | 171.6 (3) | C17—O1—C14—C15 | 179.0 (3) |
C7—N2—C8—N1 | 4.7 (5) | C17—O1—C14—C13 | −0.7 (5) |
C7—N2—C8—S1 | −173.2 (2) | C19—C18—C23—C22 | −2.0 (5) |
C3—N1—C8—N2 | −177.3 (3) | C5—C18—C23—C22 | −179.9 (3) |
C5—N1—C8—N2 | 8.1 (5) | C21—C22—C23—C18 | 0.9 (5) |
C3—N1—C8—S1 | 0.8 (4) | C11—C12—C13—C14 | 2.3 (6) |
C5—N1—C8—S1 | −173.7 (2) | O1—C14—C13—C12 | 177.3 (3) |
C2—S1—C8—N2 | 179.4 (3) | C15—C14—C13—C12 | −2.3 (6) |
C2—S1—C8—N1 | 1.2 (3) | C9—O4—C4—O3 | 4.3 (6) |
C24—O5—C20—C19 | 13.4 (5) | C9—O4—C4—C6 | −178.0 (4) |
C24—O5—C20—C21 | −167.5 (3) | C7—C6—C4—O3 | −159.7 (4) |
C18—C19—C20—O5 | 179.9 (3) | C5—C6—C4—O3 | 20.3 (5) |
C18—C19—C20—C21 | 0.8 (5) | C7—C6—C4—O4 | 22.6 (5) |
O6—C21—C20—O5 | −0.6 (5) | C5—C6—C4—O4 | −157.4 (3) |
C22—C21—C20—O5 | 178.9 (3) | O1—C14—C15—C16 | −179.0 (4) |
O6—C21—C20—C19 | 178.6 (3) | C13—C14—C15—C16 | 0.6 (6) |
C22—C21—C20—C19 | −1.9 (5) | C14—C15—C16—C11 | 1.1 (6) |
O6—C21—C22—C23 | −179.4 (3) | C12—C11—C16—C15 | −1.0 (6) |
C20—C21—C22—C23 | 1.0 (5) | C10—C11—C16—C15 | −179.2 (4) |
O2—C3—C2—C10 | 0.6 (6) |
D—H···A | D—H | H···A | D···A | D—H···A |
O6—H6···N2i | 0.82 | 2.01 | 2.783 (4) | 156 |
C10—H10···O2ii | 0.93 | 2.55 | 3.425 (4) | 156 |
C12—H12···O2ii | 0.93 | 2.67 | 3.499 (4) | 149 |
C1—H1A···O6iii | 0.96 | 2.57 | 3.444 (5) | 152 |
C17—H17C···O2iv | 0.96 | 2.47 | 3.429 (5) | 179 |
Symmetry codes: (i) x, y−1, z; (ii) −x, −y, −z+1; (iii) −x, −y, −z; (iv) −x+1, −y, −z+1. |
Experimental details
Crystal data | |
Chemical formula | C24H22N2O6S |
Mr | 466.50 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 296 |
a, b, c (Å) | 6.8096 (12), 9.9343 (18), 16.246 (3) |
α, β, γ (°) | 86.816 (3), 85.588 (3), 81.318 (3) |
V (Å3) | 1082.1 (3) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.20 |
Crystal size (mm) | 0.18 × 0.16 × 0.16 |
Data collection | |
Diffractometer | Bruker SMART APEX CCD detector |
Absorption correction | Multi-scan (SADABS; Bruker, 1998) |
Tmin, Tmax | 0.966, 0.969 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 6570, 4581, 3452 |
Rint | 0.018 |
(sin θ/λ)max (Å−1) | 0.639 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.069, 0.279, 1.33 |
No. of reflections | 4581 |
No. of parameters | 303 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.69, −0.62 |
Computer programs: SMART (Bruker, 1998), SAINT-Plus (Bruker, 1998), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 (Farrugia, 1997) and CAMERON (Watkin et al., 1996), WinGX (Farrugia, 1999).
D—H···A | D—H | H···A | D···A | D—H···A |
O6—H6···N2i | 0.820 | 2.010 | 2.783 (4) | 156 |
C10—H10···O2ii | 0.930 | 2.550 | 3.425 (4) | 156 |
C12—H12···O2ii | 0.930 | 2.670 | 3.499 (4) | 149 |
C1—H1A···O6iii | 0.960 | 2.566 | 3.444 (5) | 152 |
C17—H17C···O2iv | 0.960 | 2.469 | 3.429 (5) | 179 |
Symmetry codes: (i) x, y−1, z; (ii) −x, −y, −z+1; (iii) −x, −y, −z; (iv) −x+1, −y, −z+1. |
Acknowledgements
NSB is thankful to the University Grants Commission (UGC), India, for financial assistance and the Department of Science and Technology, (DST), India, for the data-collection facility under the IRHPA–DST program.
References
Alam, O., Khan, S. A., Siddiqui, N. & Ahsan, W. (2010). Med. Chem. Res. 19, 1245–1258. Web of Science CrossRef CAS Google Scholar
Bernstein, J., Davis, R. E., Shimoni, L. & Chang, N.-L. (1995). Angew. Chem. Int. Ed. Engl. 34, 1555–1573. CrossRef CAS Web of Science Google Scholar
Bruker (1998). SMART, SAINT-Plus and SADABS. Bruker AXS Inc., Madison, Wisconcin, USA. Google Scholar
Farrugia, L. J. (1997). J. Appl. Cryst. 30, 565. CrossRef IUCr Journals Google Scholar
Farrugia, L. J. (1999). J. Appl. Cryst. 32, 837–838. CrossRef CAS IUCr Journals Google Scholar
Jotani, M. M., Baldaniya, B. B. & Jasinski, J. P. (2010). Acta Cryst. E66, o599–o600. Web of Science CSD CrossRef IUCr Journals Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Watkin, D. J., Prout, C. K. & Pearce, L. J. (1996). CAMERON. Chemical Crystallography Laboratory, Oxford, England. Google Scholar
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Pyrimidine derivatives are of interest because of their pharmacological properties (Alam et al., 2010).
The central pyrimidine ring with a chiral C5 atom is significantly puckered and adopts a conformation which is best described as an intermediate between a boat and a screw boat form as seen earlier (Jotani et al., 2010). The atoms C5 and N1 deviate from the mean plane C6/C7/N2/C8 by 0.1024 (3) and -0.0602 (3) Å, respectively, indicating that the conformation of the pyrimidine ring is that of a twisted boat. In the molecule, The fused thiazole-pyrimidine ring is coplanar with benzylidene ring with dihedral angle 5.19 (7)°. The dihedral angle between the thiazolopyrimidine ring and 4-hydroxy-3-methoxy-phenyl group is 85.36 (7)°. The crystal structure is stabilized by a strong intermolecular O—H···N hydrogen bond resulting in a one dimensional chain of molecules along the b axis. The structure is further consolidated by C—H···O type intermolecular interactions, involving carbonyl O2 atom, forming centrosymmetric dimers; the ten and 6 membered rings thus resulting from these interactions can be described as R22(10) and R21(6) motifs in graph-set notations (Bernstein et al., 1995).