organic compounds
4-(2,4-Dichlorophenyl)-5,5-dimethyl-2-(3-silatranylpropylmino)-1,3,2-dioxaphosphorinane 2-oxide
aSchool of Chemical and Environmental Engineering, Hubei University for Nationalities, Enshi, Hubei 445000, People's Republic of China
*Correspondence e-mail: wy04971@163.com
In the title compound, C20H31Cl2N2O6PSi, the dioxaphosphorinane ring adopts a cis conformation. The silatrane fragment forms a cage-like structure in which there exists an intramolecular Si—N donor–acceptor bond. In the crystal, centrosymmetrically related molecules are linked by pairs of N—H⋯O hydrogen bonds into inversion dimers, generating rings with graph-set motif R22(8). The dimers are further connected into ribbons parallel to the a axis by intermolecular C—H⋯O hydrogen bonds.
Related literature
For the biological activity of 1,3,2-dioxaphosphorinane compounds, see: Shi et al. (2006); Sun et al. (2006) and of γ-aminopropylsilatrane, see: Puri et al. (2011). For the synthesis of the title compound, see: Wan et al. (2005).
Experimental
Crystal data
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Data collection
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Refinement
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Data collection: SMART (Bruker, 2001); cell SAINT (Bruker, 2001); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.
Supporting information
https://doi.org/10.1107/S1600536811044928/rz2656sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536811044928/rz2656Isup2.hkl
The title compound was prepared according to the procedure of Wan et al. (2005). Suitable crystals were obtained by vapor diffusion of tetrahydrofuran (THF) at room temperature (m.p. 522–523 K). Elemental analysis: calculated for C20H31Cl2N2O6PSi: C 45.72, H 5.95, N 5.33%; found: C 45.89, H 6.11, N 5.22%.
All H atoms were positioned geometrically and constrained to ride on their parent atoms, with C—H = 0.93–0.98 Å, N—H = 0.86Å, and with Uiso(H) = 1.2Ueq(C, N) or 1.5Ueq(C) for methyl H atoms.
1,3,2-Dioxaphosphorinane compounds have attracted many chemists' interest owing to their stereochemistry and wide biological activities, such as fungicidal, insecticidal as well as herbicidal activities (Shi et al., 2006; Sun et al., 2006). γ-Aminopropylsilatrane has been found to have good biological activity (Puri et al., 2011). In view of this and as a continuation of our research on the stereochemistry and biological properties of this class of compounds, we investigates 1,3,2-dioxaphosphinane derivatives containing γ-aminopropyl silatrane, including the title compound, (I), whose is reported herein.
The ←N donor-acceptor bond (Si1—N2 = 2.148 (4) Å), which is remarkably longer than an usual Si—N single bond (1.7–1.8 Å). In the molecules are linked by pairs of complementary N—H···O hydrogen bonds into centrosymmetric dimers, forming rings of graph-set motif R22(8) (Table 1; Fig. 2). The dimers are further linked into ribbon parallel to the a axis by intermolecular C—H···O hydrogen bonds.
of (I) (Fig. 1) reveals that the cyclic dioxaphosphorinane ring in the molecule adopts a thermodynamically stable conformation, while the silatrane fragment forms a cage-like structure in which there exists an intramolecular SiFor the biological activity of 1,3,2-dioxaphosphorinane compounds, see: Shi et al. (2006); Sun et al. (2006) and of γ-aminopropylsilatrane, see: Puri et al. (2011). For the synthesis of the title compound, see: Wan et al. (2005).
Data collection: SMART (Bruker, 2001); cell
SAINT (Bruker, 2001); data reduction: SAINT (Bruker, 2001); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).C20H31Cl2N2O6PSi | Z = 2 |
Mr = 525.43 | F(000) = 552 |
Triclinic, P1 | Dx = 1.417 Mg m−3 Dm = 1.417 Mg m−3 Dm measured by not measured |
Hall symbol: -P 1 | Melting point = 522–523 K |
a = 10.7738 (12) Å | Mo Kα radiation, λ = 0.71073 Å |
b = 10.9320 (13) Å | Cell parameters from 1174 reflections |
c = 11.2807 (13) Å | θ = 2.2–19.3° |
α = 111.135 (2)° | µ = 0.42 mm−1 |
β = 95.926 (2)° | T = 298 K |
γ = 90.424 (2)° | Needle, colorless |
V = 1231.2 (2) Å3 | 0.20 × 0.15 × 0.08 mm |
Bruker SMART CCD area-detector diffractometer | 2997 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.033 |
Graphite monochromator | θmax = 26.0°, θmin = 1.9° |
φ and ω scans | h = −13→6 |
6745 measured reflections | k = −13→13 |
4720 independent reflections | l = −13→13 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.065 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.194 | H-atom parameters constrained |
S = 1.00 | w = 1/[σ2(Fo2) + (0.0969P)2] where P = (Fo2 + 2Fc2)/3 |
4720 reflections | (Δ/σ)max < 0.001 |
291 parameters | Δρmax = 0.36 e Å−3 |
0 restraints | Δρmin = −0.35 e Å−3 |
C20H31Cl2N2O6PSi | γ = 90.424 (2)° |
Mr = 525.43 | V = 1231.2 (2) Å3 |
Triclinic, P1 | Z = 2 |
a = 10.7738 (12) Å | Mo Kα radiation |
b = 10.9320 (13) Å | µ = 0.42 mm−1 |
c = 11.2807 (13) Å | T = 298 K |
α = 111.135 (2)° | 0.20 × 0.15 × 0.08 mm |
β = 95.926 (2)° |
Bruker SMART CCD area-detector diffractometer | 2997 reflections with I > 2σ(I) |
6745 measured reflections | Rint = 0.033 |
4720 independent reflections |
R[F2 > 2σ(F2)] = 0.065 | 0 restraints |
wR(F2) = 0.194 | H-atom parameters constrained |
S = 1.00 | Δρmax = 0.36 e Å−3 |
4720 reflections | Δρmin = −0.35 e Å−3 |
291 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
C1 | 1.0122 (4) | 0.6821 (4) | 0.7954 (4) | 0.0437 (11) | |
C2 | 0.9035 (4) | 0.7254 (4) | 0.8460 (4) | 0.0358 (9) | |
C3 | 0.8260 (4) | 0.7889 (4) | 0.7813 (4) | 0.0438 (11) | |
H3 | 0.7504 | 0.8184 | 0.8114 | 0.053* | |
C4 | 0.8579 (4) | 0.8088 (4) | 0.6755 (4) | 0.0457 (11) | |
H4 | 0.8037 | 0.8499 | 0.6337 | 0.055* | |
C5 | 0.9678 (5) | 0.7691 (5) | 0.6316 (4) | 0.0514 (12) | |
C6 | 1.0482 (4) | 0.7019 (5) | 0.6884 (4) | 0.0501 (12) | |
H6 | 1.1228 | 0.6715 | 0.6563 | 0.060* | |
C7 | 0.8618 (4) | 0.7051 (4) | 0.9614 (4) | 0.0379 (10) | |
H7 | 0.8979 | 0.6255 | 0.9680 | 0.045* | |
C8 | 0.8945 (4) | 0.8210 (4) | 1.0912 (4) | 0.0425 (10) | |
C9 | 0.8522 (4) | 0.9521 (4) | 1.0853 (5) | 0.0531 (12) | |
H9A | 0.7647 | 0.9443 | 1.0554 | 0.080* | |
H9B | 0.8986 | 0.9753 | 1.0277 | 0.080* | |
H9C | 0.8666 | 1.0190 | 1.1690 | 0.080* | |
C10 | 1.0350 (4) | 0.8302 (5) | 1.1341 (5) | 0.0645 (15) | |
H10A | 1.0800 | 0.8493 | 1.0731 | 0.097* | |
H10B | 1.0601 | 0.7481 | 1.1395 | 0.097* | |
H10C | 1.0530 | 0.8988 | 1.2164 | 0.097* | |
C11 | 0.8290 (5) | 0.7924 (5) | 1.1928 (4) | 0.0567 (13) | |
H11A | 0.8597 | 0.7124 | 1.2011 | 0.068* | |
H11B | 0.8499 | 0.8634 | 1.2745 | 0.068* | |
C12 | 0.4695 (4) | 0.7914 (4) | 0.9460 (4) | 0.0436 (10) | |
H12A | 0.5321 | 0.8633 | 0.9787 | 0.052* | |
H12B | 0.3910 | 0.8250 | 0.9763 | 0.052* | |
C13 | 0.4549 (4) | 0.7405 (4) | 0.8012 (4) | 0.0423 (10) | |
H13A | 0.3894 | 0.6714 | 0.7699 | 0.051* | |
H13B | 0.5320 | 0.7014 | 0.7720 | 0.051* | |
C14 | 0.4239 (4) | 0.8422 (4) | 0.7415 (4) | 0.0454 (11) | |
H14A | 0.4879 | 0.9126 | 0.7744 | 0.054* | |
H14B | 0.3453 | 0.8793 | 0.7680 | 0.054* | |
C15 | 0.6068 (5) | 0.6880 (5) | 0.4263 (5) | 0.0603 (13) | |
H15A | 0.6707 | 0.6263 | 0.4277 | 0.072* | |
H15B | 0.6443 | 0.7597 | 0.4088 | 0.072* | |
C16 | 0.5014 (5) | 0.6206 (5) | 0.3235 (4) | 0.0556 (13) | |
H16A | 0.5233 | 0.6140 | 0.2402 | 0.067* | |
H16B | 0.4830 | 0.5330 | 0.3218 | 0.067* | |
C17 | 0.3320 (5) | 0.9231 (4) | 0.4212 (4) | 0.0544 (13) | |
H17A | 0.3551 | 1.0093 | 0.4219 | 0.065* | |
H17B | 0.2420 | 0.9093 | 0.4015 | 0.065* | |
C18 | 0.3951 (5) | 0.8196 (5) | 0.3220 (4) | 0.0540 (12) | |
H18A | 0.3508 | 0.8010 | 0.2376 | 0.065* | |
H18B | 0.4805 | 0.8484 | 0.3219 | 0.065* | |
C19 | 0.2604 (5) | 0.5652 (5) | 0.4171 (4) | 0.0592 (13) | |
H19A | 0.1737 | 0.5394 | 0.4154 | 0.071* | |
H19B | 0.3090 | 0.4875 | 0.3989 | 0.071* | |
C20 | 0.2724 (5) | 0.6263 (5) | 0.3168 (4) | 0.0561 (13) | |
H20A | 0.2721 | 0.5589 | 0.2326 | 0.067* | |
H20B | 0.2042 | 0.6832 | 0.3148 | 0.067* | |
Cl1 | 1.11497 (12) | 0.59273 (13) | 0.86003 (13) | 0.0648 (4) | |
Cl2 | 1.01035 (15) | 0.8000 (2) | 0.50014 (16) | 0.1002 (7) | |
N1 | 0.5068 (3) | 0.6877 (3) | 0.9955 (3) | 0.0420 (9) | |
H1 | 0.4481 | 0.6388 | 1.0041 | 0.050* | |
N2 | 0.3930 (3) | 0.7025 (3) | 0.3565 (3) | 0.0455 (9) | |
O1 | 0.7265 (2) | 0.6839 (3) | 0.9344 (3) | 0.0386 (7) | |
O2 | 0.6939 (3) | 0.7780 (3) | 1.1629 (3) | 0.0526 (8) | |
O3 | 0.6623 (3) | 0.5297 (3) | 1.0444 (3) | 0.0529 (8) | |
O4 | 0.5583 (3) | 0.7371 (3) | 0.5471 (3) | 0.0515 (8) | |
O5 | 0.3694 (3) | 0.9157 (3) | 0.5428 (3) | 0.0493 (8) | |
O6 | 0.3041 (3) | 0.6576 (3) | 0.5381 (3) | 0.0481 (8) | |
P1 | 0.64665 (11) | 0.65882 (11) | 1.03461 (10) | 0.0383 (3) | |
Si1 | 0.41111 (11) | 0.77709 (11) | 0.56192 (11) | 0.0373 (3) |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.036 (3) | 0.049 (3) | 0.051 (3) | −0.001 (2) | 0.000 (2) | 0.027 (2) |
C2 | 0.028 (2) | 0.036 (2) | 0.048 (2) | 0.0010 (18) | 0.0038 (18) | 0.0212 (19) |
C3 | 0.033 (2) | 0.050 (3) | 0.055 (3) | 0.000 (2) | 0.001 (2) | 0.028 (2) |
C4 | 0.037 (3) | 0.059 (3) | 0.047 (3) | 0.000 (2) | −0.001 (2) | 0.027 (2) |
C5 | 0.047 (3) | 0.067 (3) | 0.050 (3) | −0.003 (2) | 0.005 (2) | 0.033 (2) |
C6 | 0.038 (3) | 0.060 (3) | 0.057 (3) | 0.001 (2) | 0.009 (2) | 0.027 (2) |
C7 | 0.034 (2) | 0.038 (2) | 0.047 (2) | −0.0011 (18) | 0.0017 (19) | 0.023 (2) |
C8 | 0.036 (3) | 0.047 (3) | 0.045 (3) | −0.008 (2) | −0.0044 (19) | 0.021 (2) |
C9 | 0.053 (3) | 0.044 (3) | 0.058 (3) | −0.010 (2) | 0.003 (2) | 0.015 (2) |
C10 | 0.049 (3) | 0.070 (4) | 0.067 (3) | −0.012 (3) | −0.016 (3) | 0.021 (3) |
C11 | 0.059 (3) | 0.065 (3) | 0.041 (3) | −0.019 (3) | −0.010 (2) | 0.018 (2) |
C12 | 0.045 (3) | 0.043 (2) | 0.046 (3) | 0.007 (2) | 0.011 (2) | 0.018 (2) |
C13 | 0.048 (3) | 0.036 (2) | 0.041 (2) | 0.002 (2) | 0.005 (2) | 0.0121 (19) |
C14 | 0.052 (3) | 0.041 (2) | 0.045 (3) | 0.009 (2) | 0.006 (2) | 0.017 (2) |
C15 | 0.051 (3) | 0.067 (3) | 0.066 (3) | 0.018 (3) | 0.022 (3) | 0.024 (3) |
C16 | 0.067 (4) | 0.054 (3) | 0.047 (3) | 0.015 (3) | 0.028 (2) | 0.013 (2) |
C17 | 0.062 (3) | 0.047 (3) | 0.060 (3) | 0.002 (2) | −0.007 (2) | 0.029 (2) |
C18 | 0.066 (3) | 0.053 (3) | 0.046 (3) | 0.001 (2) | 0.005 (2) | 0.023 (2) |
C19 | 0.068 (4) | 0.052 (3) | 0.051 (3) | −0.016 (3) | 0.007 (3) | 0.012 (2) |
C20 | 0.067 (4) | 0.053 (3) | 0.041 (3) | −0.009 (2) | 0.003 (2) | 0.009 (2) |
Cl1 | 0.0502 (8) | 0.0797 (9) | 0.0828 (10) | 0.0257 (7) | 0.0131 (7) | 0.0496 (8) |
Cl2 | 0.0808 (12) | 0.1756 (19) | 0.0855 (11) | 0.0259 (11) | 0.0294 (9) | 0.0912 (13) |
N1 | 0.041 (2) | 0.051 (2) | 0.045 (2) | −0.0031 (17) | 0.0070 (16) | 0.0286 (18) |
N2 | 0.054 (3) | 0.041 (2) | 0.043 (2) | 0.0000 (18) | 0.0076 (18) | 0.0159 (17) |
O1 | 0.0308 (16) | 0.0466 (17) | 0.0395 (16) | −0.0060 (13) | 0.0009 (12) | 0.0180 (13) |
O2 | 0.052 (2) | 0.066 (2) | 0.0388 (17) | −0.0108 (16) | 0.0013 (15) | 0.0198 (16) |
O3 | 0.0414 (19) | 0.0554 (19) | 0.072 (2) | −0.0042 (15) | −0.0008 (15) | 0.0372 (17) |
O4 | 0.0430 (19) | 0.068 (2) | 0.0493 (19) | 0.0093 (16) | 0.0092 (15) | 0.0270 (16) |
O5 | 0.068 (2) | 0.0364 (16) | 0.0422 (17) | 0.0120 (15) | 0.0025 (15) | 0.0140 (14) |
O6 | 0.054 (2) | 0.0482 (18) | 0.0408 (17) | −0.0099 (15) | 0.0080 (14) | 0.0145 (14) |
P1 | 0.0384 (7) | 0.0428 (7) | 0.0382 (6) | −0.0051 (5) | 0.0029 (5) | 0.0204 (5) |
Si1 | 0.0385 (7) | 0.0367 (7) | 0.0372 (6) | 0.0038 (5) | 0.0048 (5) | 0.0140 (5) |
C1—C2 | 1.368 (6) | C14—Si1 | 1.879 (4) |
C1—C6 | 1.392 (6) | C14—H14A | 0.9700 |
C1—Cl1 | 1.754 (4) | C14—H14B | 0.9700 |
C2—C3 | 1.400 (5) | C15—O4 | 1.429 (5) |
C2—C7 | 1.508 (5) | C15—C16 | 1.509 (7) |
C3—C4 | 1.365 (6) | C15—H15A | 0.9700 |
C3—H3 | 0.9300 | C15—H15B | 0.9700 |
C4—C5 | 1.345 (6) | C16—N2 | 1.472 (6) |
C4—H4 | 0.9300 | C16—H16A | 0.9700 |
C5—C6 | 1.390 (6) | C16—H16B | 0.9700 |
C5—Cl2 | 1.739 (5) | C17—O5 | 1.420 (5) |
C6—H6 | 0.9300 | C17—C18 | 1.501 (7) |
C7—O1 | 1.458 (5) | C17—H17A | 0.9700 |
C7—C8 | 1.557 (6) | C17—H17B | 0.9700 |
C7—H7 | 0.9800 | C18—N2 | 1.467 (5) |
C8—C11 | 1.527 (6) | C18—H18A | 0.9700 |
C8—C9 | 1.529 (6) | C18—H18B | 0.9700 |
C8—C10 | 1.532 (6) | C19—O6 | 1.405 (5) |
C9—H9A | 0.9600 | C19—C20 | 1.522 (6) |
C9—H9B | 0.9600 | C19—H19A | 0.9700 |
C9—H9C | 0.9600 | C19—H19B | 0.9700 |
C10—H10A | 0.9600 | C20—N2 | 1.475 (6) |
C10—H10B | 0.9600 | C20—H20A | 0.9700 |
C10—H10C | 0.9600 | C20—H20B | 0.9700 |
C11—O2 | 1.454 (5) | N1—P1 | 1.592 (3) |
C11—H11A | 0.9700 | N1—H1 | 0.8600 |
C11—H11B | 0.9700 | N2—Si1 | 2.148 (4) |
C12—N1 | 1.474 (5) | O1—P1 | 1.585 (3) |
C12—C13 | 1.514 (5) | O2—P1 | 1.590 (3) |
C12—H12A | 0.9700 | O3—P1 | 1.465 (3) |
C12—H12B | 0.9700 | O4—Si1 | 1.657 (3) |
C13—C14 | 1.517 (5) | O5—Si1 | 1.665 (3) |
C13—H13A | 0.9700 | O6—Si1 | 1.664 (3) |
C13—H13B | 0.9700 | ||
C2—C1—C6 | 123.3 (4) | O4—C15—C16 | 108.8 (4) |
C2—C1—Cl1 | 121.6 (3) | O4—C15—H15A | 109.9 |
C6—C1—Cl1 | 115.1 (3) | C16—C15—H15A | 109.9 |
C1—C2—C3 | 116.1 (4) | O4—C15—H15B | 109.9 |
C1—C2—C7 | 124.6 (4) | C16—C15—H15B | 109.9 |
C3—C2—C7 | 119.3 (4) | H15A—C15—H15B | 108.3 |
C4—C3—C2 | 122.1 (4) | N2—C16—C15 | 106.1 (4) |
C4—C3—H3 | 119.0 | N2—C16—H16A | 110.5 |
C2—C3—H3 | 119.0 | C15—C16—H16A | 110.5 |
C5—C4—C3 | 120.0 (4) | N2—C16—H16B | 110.5 |
C5—C4—H4 | 120.0 | C15—C16—H16B | 110.5 |
C3—C4—H4 | 120.0 | H16A—C16—H16B | 108.7 |
C4—C5—C6 | 121.3 (4) | O5—C17—C18 | 108.9 (4) |
C4—C5—Cl2 | 119.7 (4) | O5—C17—H17A | 109.9 |
C6—C5—Cl2 | 118.9 (4) | C18—C17—H17A | 109.9 |
C5—C6—C1 | 117.2 (4) | O5—C17—H17B | 109.9 |
C5—C6—H6 | 121.4 | C18—C17—H17B | 109.9 |
C1—C6—H6 | 121.4 | H17A—C17—H17B | 108.3 |
O1—C7—C2 | 105.1 (3) | N2—C18—C17 | 106.2 (4) |
O1—C7—C8 | 109.2 (3) | N2—C18—H18A | 110.5 |
C2—C7—C8 | 115.6 (3) | C17—C18—H18A | 110.5 |
O1—C7—H7 | 108.9 | N2—C18—H18B | 110.5 |
C2—C7—H7 | 108.9 | C17—C18—H18B | 110.5 |
C8—C7—H7 | 108.9 | H18A—C18—H18B | 108.7 |
C11—C8—C9 | 108.6 (4) | O6—C19—C20 | 108.9 (4) |
C11—C8—C10 | 106.7 (4) | O6—C19—H19A | 109.9 |
C9—C8—C10 | 110.2 (4) | C20—C19—H19A | 109.9 |
C11—C8—C7 | 108.3 (3) | O6—C19—H19B | 109.9 |
C9—C8—C7 | 112.3 (3) | C20—C19—H19B | 109.9 |
C10—C8—C7 | 110.5 (4) | H19A—C19—H19B | 108.3 |
C8—C9—H9A | 109.5 | N2—C20—C19 | 105.2 (4) |
C8—C9—H9B | 109.5 | N2—C20—H20A | 110.7 |
H9A—C9—H9B | 109.5 | C19—C20—H20A | 110.7 |
C8—C9—H9C | 109.5 | N2—C20—H20B | 110.7 |
H9A—C9—H9C | 109.5 | C19—C20—H20B | 110.7 |
H9B—C9—H9C | 109.5 | H20A—C20—H20B | 108.8 |
C8—C10—H10A | 109.5 | C12—N1—P1 | 125.4 (3) |
C8—C10—H10B | 109.5 | C12—N1—H1 | 117.3 |
H10A—C10—H10B | 109.5 | P1—N1—H1 | 117.3 |
C8—C10—H10C | 109.5 | C18—N2—C16 | 114.4 (4) |
H10A—C10—H10C | 109.5 | C18—N2—C20 | 113.7 (4) |
H10B—C10—H10C | 109.5 | C16—N2—C20 | 113.3 (4) |
O2—C11—C8 | 112.8 (3) | C18—N2—Si1 | 104.9 (3) |
O2—C11—H11A | 109.0 | C16—N2—Si1 | 104.3 (3) |
C8—C11—H11A | 109.0 | C20—N2—Si1 | 104.9 (3) |
O2—C11—H11B | 109.0 | C7—O1—P1 | 120.6 (2) |
C8—C11—H11B | 109.0 | C11—O2—P1 | 114.1 (3) |
H11A—C11—H11B | 107.8 | C15—O4—Si1 | 122.9 (3) |
N1—C12—C13 | 111.7 (3) | C17—O5—Si1 | 123.0 (3) |
N1—C12—H12A | 109.3 | C19—O6—Si1 | 123.8 (3) |
C13—C12—H12A | 109.3 | O3—P1—O1 | 113.75 (18) |
N1—C12—H12B | 109.3 | O3—P1—O2 | 113.69 (17) |
C13—C12—H12B | 109.3 | O1—P1—O2 | 102.17 (16) |
H12A—C12—H12B | 107.9 | O3—P1—N1 | 114.75 (18) |
C12—C13—C14 | 115.4 (3) | O1—P1—N1 | 105.51 (16) |
C12—C13—H13A | 108.4 | O2—P1—N1 | 105.78 (18) |
C14—C13—H13A | 108.4 | O4—Si1—O6 | 118.09 (17) |
C12—C13—H13B | 108.4 | O4—Si1—O5 | 117.49 (17) |
C14—C13—H13B | 108.4 | O6—Si1—O5 | 120.06 (17) |
H13A—C13—H13B | 107.5 | O4—Si1—C14 | 97.52 (18) |
C13—C14—Si1 | 114.4 (3) | O6—Si1—C14 | 96.54 (18) |
C13—C14—H14A | 108.7 | O5—Si1—C14 | 96.87 (16) |
Si1—C14—H14A | 108.7 | O4—Si1—N2 | 83.46 (15) |
C13—C14—H14B | 108.7 | O6—Si1—N2 | 82.74 (14) |
Si1—C14—H14B | 108.7 | O5—Si1—N2 | 82.90 (14) |
H14A—C14—H14B | 107.6 | C14—Si1—N2 | 178.98 (19) |
C6—C1—C2—C3 | 1.9 (6) | C19—C20—N2—Si1 | −34.7 (4) |
Cl1—C1—C2—C3 | −176.4 (3) | C2—C7—O1—P1 | −179.8 (2) |
C6—C1—C2—C7 | 179.8 (4) | C8—C7—O1—P1 | −55.2 (4) |
Cl1—C1—C2—C7 | 1.5 (6) | C8—C11—O2—P1 | 62.2 (5) |
C1—C2—C3—C4 | −1.2 (6) | C16—C15—O4—Si1 | −26.8 (5) |
C7—C2—C3—C4 | −179.2 (4) | C18—C17—O5—Si1 | −28.5 (5) |
C2—C3—C4—C5 | −1.2 (7) | C20—C19—O6—Si1 | −27.5 (5) |
C3—C4—C5—C6 | 3.1 (7) | C7—O1—P1—O3 | −71.7 (3) |
C3—C4—C5—Cl2 | −177.7 (4) | C7—O1—P1—O2 | 51.2 (3) |
C4—C5—C6—C1 | −2.4 (7) | C7—O1—P1—N1 | 161.7 (3) |
Cl2—C5—C6—C1 | 178.4 (4) | C11—O2—P1—O3 | 71.4 (3) |
C2—C1—C6—C5 | −0.2 (7) | C11—O2—P1—O1 | −51.6 (3) |
Cl1—C1—C6—C5 | 178.2 (3) | C11—O2—P1—N1 | −161.7 (3) |
C1—C2—C7—O1 | −143.9 (4) | C12—N1—P1—O3 | −162.7 (3) |
C3—C2—C7—O1 | 33.9 (5) | C12—N1—P1—O1 | −36.6 (4) |
C1—C2—C7—C8 | 95.6 (5) | C12—N1—P1—O2 | 71.2 (4) |
C3—C2—C7—C8 | −86.5 (5) | C15—O4—Si1—O6 | 82.5 (4) |
O1—C7—C8—C11 | 53.4 (4) | C15—O4—Si1—O5 | −74.1 (4) |
C2—C7—C8—C11 | 171.6 (4) | C15—O4—Si1—C14 | −175.9 (4) |
O1—C7—C8—C9 | −66.6 (4) | C15—O4—Si1—N2 | 4.3 (4) |
C2—C7—C8—C9 | 51.6 (5) | C19—O6—Si1—O4 | −73.6 (4) |
O1—C7—C8—C10 | 169.9 (3) | C19—O6—Si1—O5 | 82.4 (4) |
C2—C7—C8—C10 | −71.8 (5) | C19—O6—Si1—C14 | −175.7 (4) |
C9—C8—C11—O2 | 62.5 (5) | C19—O6—Si1—N2 | 5.0 (3) |
C10—C8—C11—O2 | −178.7 (4) | C17—O5—Si1—O4 | 85.1 (4) |
C7—C8—C11—O2 | −59.7 (5) | C17—O5—Si1—O6 | −71.1 (4) |
N1—C12—C13—C14 | −176.7 (4) | C17—O5—Si1—C14 | −172.7 (4) |
C12—C13—C14—Si1 | 178.2 (3) | C17—O5—Si1—N2 | 6.3 (4) |
O4—C15—C16—N2 | 40.0 (5) | C13—C14—Si1—O4 | −64.2 (4) |
O5—C17—C18—N2 | 39.9 (5) | C13—C14—Si1—O6 | 55.4 (4) |
O6—C19—C20—N2 | 40.0 (5) | C13—C14—Si1—O5 | 176.8 (3) |
C13—C12—N1—P1 | 93.0 (4) | C18—N2—Si1—O4 | −101.5 (3) |
C17—C18—N2—C16 | −147.6 (4) | C16—N2—Si1—O4 | 19.1 (3) |
C17—C18—N2—C20 | 80.1 (4) | C20—N2—Si1—O4 | 138.4 (3) |
C17—C18—N2—Si1 | −33.9 (4) | C18—N2—Si1—O6 | 139.0 (3) |
C15—C16—N2—C18 | 79.0 (5) | C16—N2—Si1—O6 | −100.4 (3) |
C15—C16—N2—C20 | −148.5 (4) | C20—N2—Si1—O6 | 19.0 (3) |
C15—C16—N2—Si1 | −35.1 (4) | C18—N2—Si1—O5 | 17.4 (3) |
C19—C20—N2—C18 | −148.7 (4) | C16—N2—Si1—O5 | 138.0 (3) |
C19—C20—N2—C16 | 78.4 (5) | C20—N2—Si1—O5 | −102.7 (3) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O3i | 0.86 | 2.05 | 2.857 (5) | 155 |
C6—H6···O6ii | 0.93 | 2.45 | 3.332 (6) | 158 |
Symmetry codes: (i) −x+1, −y+1, −z+2; (ii) x+1, y, z. |
Experimental details
Crystal data | |
Chemical formula | C20H31Cl2N2O6PSi |
Mr | 525.43 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 298 |
a, b, c (Å) | 10.7738 (12), 10.9320 (13), 11.2807 (13) |
α, β, γ (°) | 111.135 (2), 95.926 (2), 90.424 (2) |
V (Å3) | 1231.2 (2) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.42 |
Crystal size (mm) | 0.20 × 0.15 × 0.08 |
Data collection | |
Diffractometer | Bruker SMART CCD area-detector |
Absorption correction | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 6745, 4720, 2997 |
Rint | 0.033 |
(sin θ/λ)max (Å−1) | 0.617 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.065, 0.194, 1.00 |
No. of reflections | 4720 |
No. of parameters | 291 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.36, −0.35 |
Computer programs: SMART (Bruker, 2001), SAINT (Bruker, 2001), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O3i | 0.86 | 2.05 | 2.857 (5) | 155.4 |
C6—H6···O6ii | 0.93 | 2.45 | 3.332 (6) | 157.9 |
Symmetry codes: (i) −x+1, −y+1, −z+2; (ii) x+1, y, z. |
Acknowledgements
The authors acknowledge financial support from the College Students' Innovative project in School of Chemical and Environmental Engineering, Hubei University for Nationalities, China (grant No. 2011 C005).
References
Bruker (2001). SMART and SAINT. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Puri, J. K., Singh, R. & Chahal, V. K. (2011). Chem. Soc. Rev. 40, 1791–1840. Web of Science CrossRef CAS PubMed Google Scholar
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1,3,2-Dioxaphosphorinane compounds have attracted many chemists' interest owing to their stereochemistry and wide biological activities, such as fungicidal, insecticidal as well as herbicidal activities (Shi et al., 2006; Sun et al., 2006). γ-Aminopropylsilatrane has been found to have good biological activity (Puri et al., 2011). In view of this and as a continuation of our research on the stereochemistry and biological properties of this class of compounds, we investigates 1,3,2-dioxaphosphinane derivatives containing γ-aminopropyl silatrane, including the title compound, (I), whose crystal structure is reported herein.
The crystal structure of (I) (Fig. 1) reveals that the cyclic dioxaphosphorinane ring in the molecule adopts a thermodynamically stable cis conformation, while the silatrane fragment forms a cage-like structure in which there exists an intramolecular Si←N donor-acceptor bond (Si1—N2 = 2.148 (4) Å), which is remarkably longer than an usual Si—N single bond (1.7–1.8 Å). In the crystal structure, molecules are linked by pairs of complementary N—H···O hydrogen bonds into centrosymmetric dimers, forming rings of graph-set motif R22(8) (Table 1; Fig. 2). The dimers are further linked into ribbon parallel to the a axis by intermolecular C—H···O hydrogen bonds.