metal-organic compounds
{4,6-Bis[(E)-1-methyl-2-(pyridin-2-ylmethylidene)hydrazinyl]pyrimidine-κ3N,N′,N′′}dichloridomanganese(II)
aSchool of Chemistry and CRANN, Trinity College, University of Dublin, College Green, Dublin 2, Republic of Ireland
*Correspondence e-mail: schmittw@tcd.ie
In the title compound, [MnCl2(C18H18N8)], the geometry around the MnII centre is distorted square-pyramidal. In the molecules pack via weak C—H⋯N and C—H⋯Cl interactions.
Related literature
For the synthesis of the ligand, see: Schmitt et al. (2003). For the coordination chemistry of similar ligand types, see: Stadler et al. (2005, 2006). For coordination chemistry of similar complexes that contain Mn—N bonds, see: Romain et al. (2011). For a related structure containing copper(II) ions, see: Marzec et al. (2011).
Experimental
Crystal data
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Refinement
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Data collection: SMART (Bruker, 2007); cell SAINT (Bruker, 2007); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: CrystalMaker (Palmer, 2011) and DIAMOND (Brandenburg, 1998); software used to prepare material for publication: SHELXL97.
Supporting information
https://doi.org/10.1107/S1600536811043352/su2330sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536811043352/su2330Isup2.hkl
Supporting information file. DOI: https://doi.org/10.1107/S1600536811043352/su2330Isup3.mol
4,6-Bis[N-methyl-2-(pyrindin-2-ylmethylene)hydrazinyl]pyrimidine (0.007 g, 0.025 mmol) was dissolved in 5 ml of dichloromethane and 4.50 ml of methanol. Then 0.50 ml of a methanolic 0.1 M manganese(II)chloride tetrahydrate solution was added and the mixture was left for slow evaporation. Orange, block-shaped crystals of the title compound were collected after 4 d. Yield: ca 85%.
The H atoms were positioned geometrically and were included in the
in a riding model approximation: C—H = 0.95 and 0.98 Å for CH and CH3 H atoms, respectively, with Uiso(H) = kUeq(C), where k = 1.5 for CH3 H atoms, and k = 1.2 for all other H atoms.(Pyridin-2-ylmethylene)hydrazinyl)pyrimidine-based ligands are an interesting class of compounds due to their functionalities and their geometrical features that might contribute significantly to the field of supramolecular chemistry. Lehn and coworkers recently reported that this class of compounds can systematically and modularly be extended resulting in N-functional ligand strands with varying dimensions (Stadler et al., 2005, 2006; Schmitt et al., 2003). The modular nature of the ligands enhances their appeal to be used in coordination chemistry. We present herein, the
of a manganese(II) complex of the above mentioned ligand.In the title complex the manganese(II) atom is penta-coordinated by three N atoms of the organic ligand (4,6-bis[(N-methyl-2-(pyrindin-2-ylmethylene)hydrazinyl]pyrimidine) and two Cl atoms (Fig. 1). The coordination geometry of the central MnII ion can be best described as distorted square pyramidal. The N5, N7, N8 and Cl3 atoms form the basal plane and the Cl6 Cl atom occupys the apical position. The bond distances between the N atoms and the metal ion vary between 2.2227 (16) Å [Mn1—N5] and 2.2628 (16) Å [Mn1—N7]. The Mn—Cl bond distances are 2.3695 (6) Å for Mn1—Cl3 and 2.3453 (7) Å for Mn1—Cl6. The angle between the central metal ion and the Cl atoms [Cl3—Mn1—Cl6] is equal to 113.06 (2)°. The angles between the MnII ion and the coordinating atoms located in the basal plane vary between 69.14 (6)° [N5—Mn1—N7] and 103.08 (4)° [Cl3—Mn1—N8]. The configuration around atoms C6 and C13 is assigned to be E, as the torsion angles N2—N1—C6—C1 and N6—N7—C13—C14 are 176.36 (17)° and -177.09 (16)°, respectively.
In the crystal the complex molecules are connected by intermolecular C—H···Cl and C—H···N hydrogen bonds (Fig. 2). The former exists between the non-coordinating N atom N3 and C atom C2, and the latter between the Cl atom Cl3 and C atom C18, see Table 1 for details.
A related structure that contains copper(II) ions was reported on by us recently (Marzec et al., 2011).
For the synthesis of the ligand, see: Schmitt et al. (2003). For the coordination chemistry of similar ligand types, see: Stadler et al. (2005,2006). For coordination chemistry of similar ligands that contain Mn—N bonds, see: Romain et al. (2011). For a related structure containing copper(II) ions, see: Marzec et al. (2011).
Data collection: SMART (Bruker, 2007); cell
SAINT (Bruker, 2007); data reduction: SAINT (Bruker, 2007); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: CrystalMaker (Palmer, 2011) and DIAMOND (Brandenburg, 1998); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).[MnCl2(C18H18N8)] | Z = 2 |
Mr = 472.24 | F(000) = 482 |
Triclinic, P1 | Dx = 1.583 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 8.8355 (12) Å | Cell parameters from 209 reflections |
b = 10.0972 (14) Å | θ = 1.8–28.4° |
c = 12.1466 (17) Å | µ = 0.96 mm−1 |
α = 72.571 (3)° | T = 123 K |
β = 77.694 (3)° | Block, orange |
γ = 75.700 (3)° | 0.15 × 0.10 × 0.08 mm |
V = 990.4 (2) Å3 |
Bruker SMART CCD diffractometer | 4889 independent reflections |
Radiation source: fine-focus sealed tube | 4095 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.029 |
ω and φ scans | θmax = 28.4°, θmin = 1.8° |
Absorption correction: multi-scan (SADABS; Blessing, 1995) | h = −11→11 |
Tmin = 0.891, Tmax = 0.926 | k = −13→13 |
13578 measured reflections | l = −16→16 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.039 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.088 | H-atom parameters constrained |
S = 1.04 | w = 1/[σ2(Fo2) + (0.0408P)2 + 0.5107P] where P = (Fo2 + 2Fc2)/3 |
4889 reflections | (Δ/σ)max = 0.001 |
264 parameters | Δρmax = 0.47 e Å−3 |
0 restraints | Δρmin = −0.24 e Å−3 |
[MnCl2(C18H18N8)] | γ = 75.700 (3)° |
Mr = 472.24 | V = 990.4 (2) Å3 |
Triclinic, P1 | Z = 2 |
a = 8.8355 (12) Å | Mo Kα radiation |
b = 10.0972 (14) Å | µ = 0.96 mm−1 |
c = 12.1466 (17) Å | T = 123 K |
α = 72.571 (3)° | 0.15 × 0.10 × 0.08 mm |
β = 77.694 (3)° |
Bruker SMART CCD diffractometer | 4889 independent reflections |
Absorption correction: multi-scan (SADABS; Blessing, 1995) | 4095 reflections with I > 2σ(I) |
Tmin = 0.891, Tmax = 0.926 | Rint = 0.029 |
13578 measured reflections |
R[F2 > 2σ(F2)] = 0.039 | 0 restraints |
wR(F2) = 0.088 | H-atom parameters constrained |
S = 1.04 | Δρmax = 0.47 e Å−3 |
4889 reflections | Δρmin = −0.24 e Å−3 |
264 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Mn1 | 0.67993 (3) | 0.16794 (3) | 0.82771 (3) | 0.01792 (9) | |
Cl3 | 0.79147 (6) | 0.23004 (5) | 0.96172 (5) | 0.02639 (12) | |
Cl6 | 0.83681 (6) | 0.18893 (6) | 0.64375 (4) | 0.02952 (13) | |
N1 | 0.01708 (19) | 0.67410 (17) | 0.66222 (14) | 0.0208 (3) | |
N2 | 0.14098 (19) | 0.69997 (17) | 0.69778 (15) | 0.0212 (3) | |
N3 | −0.3287 (2) | 0.85135 (18) | 0.53910 (16) | 0.0256 (4) | |
N4 | 0.37974 (19) | 0.59915 (17) | 0.76727 (15) | 0.0213 (3) | |
N5 | 0.47733 (18) | 0.34990 (17) | 0.80430 (14) | 0.0191 (3) | |
N6 | 0.32711 (18) | 0.19442 (17) | 0.79741 (15) | 0.0201 (3) | |
N7 | 0.45792 (18) | 0.09592 (16) | 0.82524 (14) | 0.0183 (3) | |
N8 | 0.72286 (18) | −0.07073 (17) | 0.88859 (14) | 0.0193 (3) | |
C1 | −0.2119 (2) | 0.7419 (2) | 0.57423 (17) | 0.0213 (4) | |
C2 | −0.4426 (2) | 0.8238 (2) | 0.49708 (19) | 0.0282 (5) | |
H2 | −0.5268 | 0.8997 | 0.4731 | 0.034* | |
C3 | −0.4455 (3) | 0.6926 (2) | 0.48639 (19) | 0.0291 (5) | |
H3 | −0.5288 | 0.6789 | 0.4553 | 0.035* | |
C4 | −0.3236 (3) | 0.5808 (2) | 0.52218 (19) | 0.0294 (5) | |
H4 | −0.3217 | 0.4888 | 0.5160 | 0.035* | |
C5 | −0.2060 (2) | 0.6057 (2) | 0.56669 (18) | 0.0257 (4) | |
H5 | −0.1215 | 0.5309 | 0.5921 | 0.031* | |
C6 | −0.0873 (2) | 0.7771 (2) | 0.61700 (17) | 0.0219 (4) | |
H6 | −0.0844 | 0.8724 | 0.6113 | 0.026* | |
C7 | 0.1690 (2) | 0.8430 (2) | 0.6747 (2) | 0.0269 (4) | |
H7A | 0.0817 | 0.8981 | 0.7172 | 0.040* | |
H7B | 0.1756 | 0.8885 | 0.5908 | 0.040* | |
H7C | 0.2683 | 0.8385 | 0.7006 | 0.040* | |
C8 | 0.2476 (2) | 0.5803 (2) | 0.74022 (16) | 0.0192 (4) | |
C9 | 0.2191 (2) | 0.4463 (2) | 0.75266 (17) | 0.0202 (4) | |
H9 | 0.1217 | 0.4339 | 0.7398 | 0.024* | |
C10 | 0.3397 (2) | 0.3324 (2) | 0.78463 (16) | 0.0178 (4) | |
C11 | 0.4861 (2) | 0.4824 (2) | 0.79677 (18) | 0.0218 (4) | |
H11 | 0.5805 | 0.4943 | 0.8149 | 0.026* | |
C12 | 0.1896 (2) | 0.1539 (2) | 0.7783 (2) | 0.0257 (4) | |
H12A | 0.1624 | 0.0739 | 0.8428 | 0.039* | |
H12B | 0.2136 | 0.1263 | 0.7047 | 0.039* | |
H12C | 0.1001 | 0.2341 | 0.7744 | 0.039* | |
C13 | 0.4659 (2) | −0.0363 (2) | 0.83818 (17) | 0.0211 (4) | |
H13 | 0.3820 | −0.0705 | 0.8253 | 0.025* | |
C14 | 0.6114 (2) | −0.1315 (2) | 0.87384 (16) | 0.0189 (4) | |
C15 | 0.6297 (2) | −0.2762 (2) | 0.89248 (18) | 0.0236 (4) | |
H15 | 0.5485 | −0.3155 | 0.8816 | 0.028* | |
C16 | 0.7687 (2) | −0.3630 (2) | 0.92733 (18) | 0.0252 (4) | |
H16 | 0.7850 | −0.4627 | 0.9400 | 0.030* | |
C17 | 0.8830 (2) | −0.3016 (2) | 0.94323 (18) | 0.0243 (4) | |
H17 | 0.9791 | −0.3585 | 0.9675 | 0.029* | |
C18 | 0.8557 (2) | −0.1558 (2) | 0.92326 (17) | 0.0217 (4) | |
H18 | 0.9348 | −0.1145 | 0.9347 | 0.026* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Mn1 | 0.01333 (14) | 0.01712 (15) | 0.02342 (16) | −0.00139 (10) | −0.00637 (11) | −0.00423 (11) |
Cl3 | 0.0216 (2) | 0.0294 (3) | 0.0326 (3) | −0.00431 (19) | −0.0116 (2) | −0.0098 (2) |
Cl6 | 0.0247 (3) | 0.0315 (3) | 0.0265 (3) | −0.0013 (2) | −0.0011 (2) | −0.0043 (2) |
N1 | 0.0168 (8) | 0.0219 (8) | 0.0227 (8) | −0.0002 (6) | −0.0064 (6) | −0.0049 (7) |
N2 | 0.0178 (8) | 0.0173 (8) | 0.0283 (9) | 0.0002 (6) | −0.0094 (7) | −0.0047 (7) |
N3 | 0.0191 (8) | 0.0237 (9) | 0.0309 (9) | 0.0026 (7) | −0.0094 (7) | −0.0042 (7) |
N4 | 0.0189 (8) | 0.0192 (8) | 0.0273 (9) | −0.0003 (6) | −0.0082 (7) | −0.0075 (7) |
N5 | 0.0149 (7) | 0.0200 (8) | 0.0234 (8) | −0.0008 (6) | −0.0065 (6) | −0.0068 (6) |
N6 | 0.0130 (7) | 0.0175 (8) | 0.0294 (9) | −0.0005 (6) | −0.0083 (6) | −0.0041 (7) |
N7 | 0.0135 (7) | 0.0185 (8) | 0.0211 (8) | 0.0012 (6) | −0.0057 (6) | −0.0039 (6) |
N8 | 0.0175 (8) | 0.0189 (8) | 0.0213 (8) | −0.0021 (6) | −0.0062 (6) | −0.0038 (6) |
C1 | 0.0180 (9) | 0.0223 (9) | 0.0205 (9) | 0.0003 (7) | −0.0052 (7) | −0.0030 (8) |
C2 | 0.0185 (10) | 0.0324 (11) | 0.0302 (11) | −0.0001 (8) | −0.0087 (8) | −0.0036 (9) |
C3 | 0.0233 (10) | 0.0387 (12) | 0.0266 (11) | −0.0096 (9) | −0.0074 (8) | −0.0050 (9) |
C4 | 0.0326 (12) | 0.0275 (11) | 0.0287 (11) | −0.0073 (9) | −0.0070 (9) | −0.0055 (9) |
C5 | 0.0245 (10) | 0.0232 (10) | 0.0265 (10) | 0.0001 (8) | −0.0075 (8) | −0.0034 (8) |
C6 | 0.0199 (9) | 0.0190 (9) | 0.0244 (10) | 0.0000 (7) | −0.0051 (8) | −0.0039 (8) |
C7 | 0.0236 (10) | 0.0183 (9) | 0.0391 (12) | −0.0005 (8) | −0.0115 (9) | −0.0061 (9) |
C8 | 0.0170 (9) | 0.0216 (9) | 0.0174 (9) | −0.0001 (7) | −0.0034 (7) | −0.0052 (7) |
C9 | 0.0143 (9) | 0.0209 (9) | 0.0247 (10) | 0.0001 (7) | −0.0073 (7) | −0.0048 (8) |
C10 | 0.0153 (8) | 0.0193 (9) | 0.0191 (9) | −0.0020 (7) | −0.0034 (7) | −0.0060 (7) |
C11 | 0.0175 (9) | 0.0225 (10) | 0.0275 (10) | −0.0017 (7) | −0.0082 (8) | −0.0079 (8) |
C12 | 0.0159 (9) | 0.0231 (10) | 0.0401 (12) | −0.0034 (7) | −0.0101 (8) | −0.0075 (9) |
C13 | 0.0176 (9) | 0.0210 (9) | 0.0254 (10) | −0.0031 (7) | −0.0071 (8) | −0.0048 (8) |
C14 | 0.0164 (9) | 0.0189 (9) | 0.0202 (9) | −0.0023 (7) | −0.0041 (7) | −0.0036 (7) |
C15 | 0.0225 (10) | 0.0205 (9) | 0.0293 (11) | −0.0035 (8) | −0.0082 (8) | −0.0064 (8) |
C16 | 0.0282 (10) | 0.0168 (9) | 0.0291 (11) | 0.0008 (8) | −0.0076 (9) | −0.0055 (8) |
C17 | 0.0209 (10) | 0.0245 (10) | 0.0242 (10) | 0.0039 (8) | −0.0087 (8) | −0.0044 (8) |
C18 | 0.0176 (9) | 0.0236 (10) | 0.0238 (10) | −0.0025 (7) | −0.0072 (8) | −0.0045 (8) |
Mn1—N5 | 2.2227 (16) | C3—H3 | 0.9500 |
Mn1—N8 | 2.2580 (16) | C4—C5 | 1.373 (3) |
Mn1—N7 | 2.2628 (16) | C4—H4 | 0.9500 |
Mn1—Cl6 | 2.3453 (7) | C5—H5 | 0.9500 |
Mn1—Cl3 | 2.3695 (6) | C6—H6 | 0.9500 |
N1—C6 | 1.279 (2) | C7—H7A | 0.9800 |
N1—N2 | 1.365 (2) | C7—H7B | 0.9800 |
N2—C8 | 1.373 (2) | C7—H7C | 0.9800 |
N2—C7 | 1.459 (3) | C8—C9 | 1.396 (3) |
N3—C2 | 1.339 (3) | C9—C10 | 1.382 (2) |
N3—C1 | 1.345 (2) | C9—H9 | 0.9500 |
N4—C11 | 1.320 (2) | C11—H11 | 0.9500 |
N4—C8 | 1.348 (2) | C12—H12A | 0.9800 |
N5—C11 | 1.334 (2) | C12—H12B | 0.9800 |
N5—C10 | 1.350 (2) | C12—H12C | 0.9800 |
N6—N7 | 1.355 (2) | C13—C14 | 1.463 (3) |
N6—C10 | 1.385 (2) | C13—H13 | 0.9500 |
N6—C12 | 1.457 (2) | C14—C15 | 1.384 (3) |
N7—C13 | 1.282 (2) | C15—C16 | 1.387 (3) |
N8—C18 | 1.338 (2) | C15—H15 | 0.9500 |
N8—C14 | 1.348 (2) | C16—C17 | 1.380 (3) |
C1—C5 | 1.394 (3) | C16—H16 | 0.9500 |
C1—C6 | 1.468 (3) | C17—C18 | 1.385 (3) |
C2—C3 | 1.376 (3) | C17—H17 | 0.9500 |
C2—H2 | 0.9500 | C18—H18 | 0.9500 |
C3—C4 | 1.389 (3) | ||
N5—Mn1—N8 | 138.73 (6) | N1—C6—H6 | 121.4 |
N5—Mn1—N7 | 69.14 (6) | C1—C6—H6 | 121.4 |
N8—Mn1—N7 | 71.34 (6) | N2—C7—H7A | 109.5 |
N5—Mn1—Cl6 | 105.58 (5) | N2—C7—H7B | 109.5 |
N8—Mn1—Cl6 | 98.09 (4) | H7A—C7—H7B | 109.5 |
N7—Mn1—Cl6 | 109.23 (4) | N2—C7—H7C | 109.5 |
N5—Mn1—Cl3 | 98.11 (4) | H7A—C7—H7C | 109.5 |
N8—Mn1—Cl3 | 103.08 (4) | H7B—C7—H7C | 109.5 |
N7—Mn1—Cl3 | 137.70 (4) | N4—C8—N2 | 117.01 (17) |
Cl6—Mn1—Cl3 | 113.06 (2) | N4—C8—C9 | 122.41 (17) |
C6—N1—N2 | 120.08 (17) | N2—C8—C9 | 120.58 (17) |
N1—N2—C8 | 114.05 (15) | C10—C9—C8 | 116.66 (17) |
N1—N2—C7 | 121.98 (15) | C10—C9—H9 | 121.7 |
C8—N2—C7 | 123.26 (16) | C8—C9—H9 | 121.7 |
C2—N3—C1 | 116.94 (18) | N5—C10—C9 | 121.65 (17) |
C11—N4—C8 | 115.07 (17) | N5—C10—N6 | 116.17 (16) |
C11—N5—C10 | 115.84 (16) | C9—C10—N6 | 122.17 (17) |
C11—N5—Mn1 | 123.94 (12) | N4—C11—N5 | 128.05 (18) |
C10—N5—Mn1 | 119.88 (12) | N4—C11—H11 | 116.0 |
N7—N6—C10 | 114.64 (15) | N5—C11—H11 | 116.0 |
N7—N6—C12 | 120.81 (15) | N6—C12—H12A | 109.5 |
C10—N6—C12 | 124.50 (15) | N6—C12—H12B | 109.5 |
C13—N7—N6 | 122.20 (16) | H12A—C12—H12B | 109.5 |
C13—N7—Mn1 | 118.24 (12) | N6—C12—H12C | 109.5 |
N6—N7—Mn1 | 119.14 (12) | H12A—C12—H12C | 109.5 |
C18—N8—C14 | 117.69 (16) | H12B—C12—H12C | 109.5 |
C18—N8—Mn1 | 125.94 (13) | N7—C13—C14 | 116.34 (17) |
C14—N8—Mn1 | 115.79 (12) | N7—C13—H13 | 121.8 |
N3—C1—C5 | 122.57 (18) | C14—C13—H13 | 121.8 |
N3—C1—C6 | 115.26 (17) | N8—C14—C15 | 122.81 (17) |
C5—C1—C6 | 122.13 (17) | N8—C14—C13 | 116.59 (16) |
N3—C2—C3 | 124.18 (19) | C15—C14—C13 | 120.59 (17) |
N3—C2—H2 | 117.9 | C14—C15—C16 | 118.86 (18) |
C3—C2—H2 | 117.9 | C14—C15—H15 | 120.6 |
C2—C3—C4 | 118.28 (19) | C16—C15—H15 | 120.6 |
C2—C3—H3 | 120.9 | C17—C16—C15 | 118.62 (18) |
C4—C3—H3 | 120.9 | C17—C16—H16 | 120.7 |
C5—C4—C3 | 118.8 (2) | C15—C16—H16 | 120.7 |
C5—C4—H4 | 120.6 | C16—C17—C18 | 119.14 (18) |
C3—C4—H4 | 120.6 | C16—C17—H17 | 120.4 |
C4—C5—C1 | 119.22 (19) | C18—C17—H17 | 120.4 |
C4—C5—H5 | 120.4 | N8—C18—C17 | 122.87 (18) |
C1—C5—H5 | 120.4 | N8—C18—H18 | 118.6 |
N1—C6—C1 | 117.14 (18) | C17—C18—H18 | 118.6 |
C6—N1—N2—C8 | −177.44 (18) | N3—C1—C6—N1 | 173.05 (18) |
C6—N1—N2—C7 | −6.8 (3) | C5—C1—C6—N1 | −9.2 (3) |
N8—Mn1—N5—C11 | 160.34 (14) | C11—N4—C8—N2 | −173.62 (17) |
N7—Mn1—N5—C11 | 177.93 (17) | C11—N4—C8—C9 | 5.6 (3) |
Cl6—Mn1—N5—C11 | −77.03 (16) | N1—N2—C8—N4 | 174.36 (16) |
Cl3—Mn1—N5—C11 | 39.75 (16) | C7—N2—C8—N4 | 3.8 (3) |
N8—Mn1—N5—C10 | −26.59 (19) | N1—N2—C8—C9 | −4.8 (3) |
N7—Mn1—N5—C10 | −9.01 (13) | C7—N2—C8—C9 | −175.38 (19) |
Cl6—Mn1—N5—C10 | 96.04 (14) | N4—C8—C9—C10 | −5.5 (3) |
Cl3—Mn1—N5—C10 | −147.19 (14) | N2—C8—C9—C10 | 173.61 (17) |
C10—N6—N7—C13 | −178.82 (18) | C11—N5—C10—C9 | 3.3 (3) |
C12—N6—N7—C13 | −1.4 (3) | Mn1—N5—C10—C9 | −170.32 (14) |
C10—N6—N7—Mn1 | −6.4 (2) | C11—N5—C10—N6 | −177.21 (17) |
C12—N6—N7—Mn1 | 171.03 (14) | Mn1—N5—C10—N6 | 9.2 (2) |
N5—Mn1—N7—C13 | −179.21 (16) | C8—C9—C10—N5 | 0.8 (3) |
N8—Mn1—N7—C13 | −11.35 (14) | C8—C9—C10—N6 | −178.64 (17) |
Cl6—Mn1—N7—C13 | 80.91 (15) | N7—N6—C10—N5 | −1.6 (2) |
Cl3—Mn1—N7—C13 | −100.42 (15) | C12—N6—C10—N5 | −178.96 (18) |
N5—Mn1—N7—N6 | 8.07 (13) | N7—N6—C10—C9 | 177.86 (17) |
N8—Mn1—N7—N6 | 175.93 (15) | C12—N6—C10—C9 | 0.5 (3) |
Cl6—Mn1—N7—N6 | −91.81 (13) | C8—N4—C11—N5 | −0.9 (3) |
Cl3—Mn1—N7—N6 | 86.86 (14) | C10—N5—C11—N4 | −3.4 (3) |
N5—Mn1—N8—C18 | −161.13 (14) | Mn1—N5—C11—N4 | 169.90 (16) |
N7—Mn1—N8—C18 | −178.46 (17) | N6—N7—C13—C14 | −177.09 (16) |
Cl6—Mn1—N8—C18 | 73.90 (16) | Mn1—N7—C13—C14 | 10.4 (2) |
Cl3—Mn1—N8—C18 | −42.16 (16) | C18—N8—C14—C15 | −0.3 (3) |
N5—Mn1—N8—C14 | 27.89 (18) | Mn1—N8—C14—C15 | 171.45 (15) |
N7—Mn1—N8—C14 | 10.56 (13) | C18—N8—C14—C13 | 178.80 (17) |
Cl6—Mn1—N8—C14 | −97.09 (13) | Mn1—N8—C14—C13 | −9.4 (2) |
Cl3—Mn1—N8—C14 | 146.86 (13) | N7—C13—C14—N8 | −0.5 (3) |
C2—N3—C1—C5 | 0.8 (3) | N7—C13—C14—C15 | 178.61 (19) |
C2—N3—C1—C6 | 178.55 (18) | N8—C14—C15—C16 | −0.3 (3) |
C1—N3—C2—C3 | −1.0 (3) | C13—C14—C15—C16 | −179.37 (19) |
N3—C2—C3—C4 | 0.6 (3) | C14—C15—C16—C17 | 0.6 (3) |
C2—C3—C4—C5 | 0.1 (3) | C15—C16—C17—C18 | −0.4 (3) |
C3—C4—C5—C1 | −0.2 (3) | C14—N8—C18—C17 | 0.6 (3) |
N3—C1—C5—C4 | −0.2 (3) | Mn1—N8—C18—C17 | −170.26 (15) |
C6—C1—C5—C4 | −177.8 (2) | C16—C17—C18—N8 | −0.2 (3) |
N2—N1—C6—C1 | 176.38 (17) |
D—H···A | D—H | H···A | D···A | D—H···A |
C2—H2···N3i | 0.95 | 2.50 | 3.358 (3) | 151 |
C18—H18···Cl3ii | 0.95 | 2.80 | 3.508 (2) | 133 |
Symmetry codes: (i) −x−1, −y+2, −z+1; (ii) −x+2, −y, −z+2. |
Experimental details
Crystal data | |
Chemical formula | [MnCl2(C18H18N8)] |
Mr | 472.24 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 123 |
a, b, c (Å) | 8.8355 (12), 10.0972 (14), 12.1466 (17) |
α, β, γ (°) | 72.571 (3), 77.694 (3), 75.700 (3) |
V (Å3) | 990.4 (2) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.96 |
Crystal size (mm) | 0.15 × 0.10 × 0.08 |
Data collection | |
Diffractometer | Bruker SMART CCD diffractometer |
Absorption correction | Multi-scan (SADABS; Blessing, 1995) |
Tmin, Tmax | 0.891, 0.926 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 13578, 4889, 4095 |
Rint | 0.029 |
(sin θ/λ)max (Å−1) | 0.669 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.039, 0.088, 1.04 |
No. of reflections | 4889 |
No. of parameters | 264 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.47, −0.24 |
Computer programs: SMART (Bruker, 2007), SAINT (Bruker, 2007), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), CrystalMaker (Palmer, 2011) and DIAMOND (Brandenburg, 1998).
D—H···A | D—H | H···A | D···A | D—H···A |
C2—H2···N3i | 0.95 | 2.50 | 3.358 (3) | 151 |
C18—H18···Cl3ii | 0.95 | 2.80 | 3.508 (2) | 133 |
Symmetry codes: (i) −x−1, −y+2, −z+1; (ii) −x+2, −y, −z+2. |
Acknowledgements
The authors thank the Science Foundation Ireland (SFI) for financial support (grant Nos 06/RFP/CHE174 and 08/IN.1/I2047). BM gratefully acknowledges financial support from DRHEA and Trinity College.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
(Pyridin-2-ylmethylene)hydrazinyl)pyrimidine-based ligands are an interesting class of compounds due to their functionalities and their geometrical features that might contribute significantly to the field of supramolecular chemistry. Lehn and coworkers recently reported that this class of compounds can systematically and modularly be extended resulting in N-functional ligand strands with varying dimensions (Stadler et al., 2005, 2006; Schmitt et al., 2003). The modular nature of the ligands enhances their appeal to be used in coordination chemistry. We present herein, the crystal structure of a manganese(II) complex of the above mentioned ligand.
In the title complex the manganese(II) atom is penta-coordinated by three N atoms of the organic ligand (4,6-bis[(N-methyl-2-(pyrindin-2-ylmethylene)hydrazinyl]pyrimidine) and two Cl atoms (Fig. 1). The coordination geometry of the central MnII ion can be best described as distorted square pyramidal. The N5, N7, N8 and Cl3 atoms form the basal plane and the Cl6 Cl atom occupys the apical position. The bond distances between the N atoms and the metal ion vary between 2.2227 (16) Å [Mn1—N5] and 2.2628 (16) Å [Mn1—N7]. The Mn—Cl bond distances are 2.3695 (6) Å for Mn1—Cl3 and 2.3453 (7) Å for Mn1—Cl6. The angle between the central metal ion and the Cl atoms [Cl3—Mn1—Cl6] is equal to 113.06 (2)°. The angles between the MnII ion and the coordinating atoms located in the basal plane vary between 69.14 (6)° [N5—Mn1—N7] and 103.08 (4)° [Cl3—Mn1—N8]. The configuration around atoms C6 and C13 is assigned to be E, as the torsion angles N2—N1—C6—C1 and N6—N7—C13—C14 are 176.36 (17)° and -177.09 (16)°, respectively.
In the crystal the complex molecules are connected by intermolecular C—H···Cl and C—H···N hydrogen bonds (Fig. 2). The former exists between the non-coordinating N atom N3 and C atom C2, and the latter between the Cl atom Cl3 and C atom C18, see Table 1 for details.
A related structure that contains copper(II) ions was reported on by us recently (Marzec et al., 2011).