organic compounds
5,10,15,20-Tetrakis(1-methylpyridinium-4-yl)porphyrin tetraiodide tetrahydrate
aDepartment of Chemistry, University of Aveiro, QOPNA, 3810-193 Aveiro, Portugal, and bDepartment of Chemistry, University of Aveiro, CICECO, 3810-193 Aveiro, Portugal
*Correspondence e-mail: filipe.paz@ua.pt
The 44H38N82+·4I−·4H2O, comprises two halves of non-equivalent cations of 5,10,15,20-tetrakis(1-methylpyridinium)porphyrin (with the full molecule of each completed by the application of inversion symmetry), four charge balancing iodide anions and four water molecules of crystallization (two water molecules are fully occupied and four molecules have a site occupancy of 50%). The porphyrin cations are arranged into supramolecular columns parallel to the b axis, mediated by π–π [centroid–centroid distance = 3.762 (4) Å] and C—H⋯π supramolecular interactions [C⋯centroid distance = 3.522 (7) Å, C—H⋯centroid = 128°], leading to the formation of columns parallel to the b axis. The close packing leads to the presence of a one-dimensional channel filled with partially occupied water molecules engaged in O—H⋯O and O—H⋯I hydrogen bonds
of the title compound, CRelated literature
For general background on the search for alternative treatments for microbial infections, see: Gomes et al. (2011); Alves et al. (2008); Carvalho et al. (2009). For the use of as photosensitizers, see: Alves et al. (2009); Banfi et al. (2006); Merchat et al. (1996); Tomé et al. (2004); Yu et al. (2009). For general background on the work carried out by our group, see: Paz et al. (2002); Paz & Klinowski (2003); Shi et al. (2008).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2006); cell APEX2; data reduction: SAINT-Plus (Bruker, 2005); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: DIAMOND (Brandenburg, 2009); software used to prepare material for publication: SHELXTL.
Supporting information
https://doi.org/10.1107/S1600536811043844/tk5003sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536811043844/tk5003Isup2.hkl
Crystals of the title compound have been isolated using the synthetic procedure described in detail by Gomes et al. (2011).
Hydrogen atoms bound to carbon and nitrogen were placed in idealized positions with C—H = 0.95 Å (aromatic) or 0.98 Å (terminal methyl groups), and N—H = 0.88 Å. These atoms were included in the final structural model in riding-motion approximation. The isotropic thermal displacement parameters for these atoms were fixed at 1.2 (for the aromatic H atoms) or 1.5 (for the terminal —CH3 moieties) times Ueq of the atom (C or N) to which they are attached.
Four water molecules of crystallization were found to be partially occupied and were included in the final structural model with fixed rates of occupancy of 50% (calculated from unrestrained
for the site occupancies). Hydrogen atoms associated with water molecules could not be located from difference Fourier maps and attempts to include these in calculated positions did not lead stable structural refinements. Nevertheless, the hydrogen atoms associated with these chemical entities have been included in the of the title compound.The structural model contains a large residual electron densities of 2.73 and -2.79 e.Å-3 located at 0.91 and 0.82 Å from the I4 atom, respectively. Attempts to include these peaks as a disordered iodide anion did not lead to sensible structural refinements.
With the increasing number of antibiotic-resistant strains of microorganisms it is imperative to find alternative treatments for microbial infections (Alves et al., 2008). Photodynamic therapy is a promising non-antibiotic approach to photoinactivate antibiotic-multi-resistant pathogenic microorganisms. The photodynamic destruction of microorganisms is based on the ability of certain photosensitizers, when activated by light, generate reactive oxygen species that are able to destroy or affect bacterial membranes (Carvalho et al., 2009). For example, studies using cationic meso-substituted
acting as photosensitizers revealed interesting results in the destruction of Gram-positive and Gram-negative bacteria (Alves et al., 2009; Banfi et al., 2006; Merchat et al., 1996). The compound 5,10,15,20-tetrakis(1-methylpyridinium-4-yl)porphyrin (Gomes et al., 2011) is one of the most used photosensitizers in the photo-inactivation studies of microorganisms. Results have shown that the cationic conjugates are able to efficiently photosensitize different types of microorganisms (Gomes et al., 2011; Tomé et al., 2004; Alves et al., 2008; Yu et al., 2009). Following our on-going interest on organic crystals (Paz et al., 2002; Paz & Klinowski, 2003) and in water clusters confined in organic/hybrid matrices (Shi et al., 2008), here we wish to describe the of the title compound.The π–π stacking and C—H···π interactions: there are two π–π stacking interactions between adjacent pyrrole rings [Cg···Cg distances of 3.762 (4) and 4.108 (4) Å], and there is a single C35—H35···π interaction [C···Cg of 3.522 (7) Å] between a hydrogen from the pyridinium ring and a pyrrole ring (interactions not shown). These supramolecular interactions contribute to the formation of columns of porphyrin molecules which are parallel to the b axis as depicted in Fig. 2. These columnar arrangements close pack in the ac plane leading to the formation of one-dimensional channels which, due to the need of close proximity of the iodide anions with the pyridinium rings, are instead filled with disordered water molecules of crystallization engaged in hydrogen bonding interactions (Table 1 and Figs 2 and 3). We note that a sole water molecule (O1W) is located between two iodide anions (I2 and I3) and outside the aforementioned channel, deeply embedded into the hydrophobic portion of the The remaining three water molecules are distributed among five independent crystallographic sites which may be involved in several O—H···O hydrogen bonding interactions as depicted in Fig. 3 (see Table 1 for geometric details). It is also interesting to note that only one iodide anion (I1) is not close to water molecules, participating instead in several short contacts with the porphyrin cations, among which a C—H···I- weak hydrogen interaction (dD···A = 3.691 (6) Å) arises as the strongest and more directional one (green dashed lines in Fig. 2). I2 to I4 are also involved in such type of interactions (not shown) as summarized in Table 1.
(Fig. 1) of the title compound, (C44H38N8)I4.4H2O, comprises two distinct halves of centrosymmetric tetracationic porphyrin molecules, whose charge is balanced by four iodide anions, plus four water molecules of crystallization. The porphyrin rings are planar (with deviations from planarity smaller than ca 0.16 Å) subtending angles with the substituent pyridinium rings which range from ca 56 to ca 68°. The is rich in weak supramolecular interactions such asFor general background on the search for alternative treatments for microbial infections, see: Gomes et al. (2011); Alves et al. (2008); Carvalho et al. (2009). For the use of
as photosensitizers, see: Alves et al. (2009); Banfi et al. (2006); Merchat et al. (1996); Tomé et al. (2004); Yu et al. (2009). For general background on the work carried out by our group, see: Paz et al. (2002); Paz & Klinowski (2003); Shi et al. (2008).Data collection: APEX2 (Bruker, 2006); cell
APEX2 (Bruker, 2006); data reduction: SAINT-Plus (Bruker, 2005); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: DIAMOND (Brandenburg, 2009); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).Fig. 1. Molecular units comprising the asymmetric unit of the title compound. The porphyrin molecules have been completed (through inversion symmetry) for clarity. Displacement ellipsoids are drawn at the 50% probability level and the atomic labeling is provided for all non-hydrogen atoms comprising the asymmetric unit. Hydrogen atoms are represented as small spheres with arbitrary radius. | |
Fig. 2. Crystal packing of the title compound viewed in perspective along the [010] direction of the unit cell. Hydrogen bonds involving only water molecules are depicted as dashed bright green lines and those involving water molecules and iodide anions are depicted as dashed pink lines. The C—H···I- weak hydrogen bond is depicted as a dashed green line. | |
Fig. 3. Portion of the hydrogen bonded zigzag chain involving iodide anions and water molecules of crystallization present in the crystal structure of the title compound. For clarity, the site occupancy of each water molecule is represented next to the label, and the symmetry codes used to generate equivalent atoms are omitted. For geometric details on the represented supramolecular interactions see Table 1. |
C44H38N82+·4I−·4H2O | F(000) = 2440 |
Mr = 1258.49 | Dx = 1.730 Mg m−3 |
Monoclinic, P21/n | Cu Kα radiation, λ = 1.54178 Å |
Hall symbol: -P 2yn | Cell parameters from 8573 reflections |
a = 24.3331 (4) Å | θ = 3.7–62.2° |
b = 6.5209 (1) Å | µ = 20.65 mm−1 |
c = 30.5663 (5) Å | T = 100 K |
β = 95.025 (1)° | Block, brown |
V = 4831.43 (13) Å3 | 0.20 × 0.15 × 0.08 mm |
Z = 4 |
Bruker X8 KappaCCD APEXII diffractometer | 7346 independent reflections |
Radiation source: fine-focus sealed tube | 7013 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.039 |
ω and φ scans | θmax = 62.7°, θmin = 7.7° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1997) | h = −27→27 |
Tmin = 0.104, Tmax = 0.289 | k = −7→7 |
47661 measured reflections | l = −22→34 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.044 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.110 | H-atom parameters constrained |
S = 1.09 | w = 1/[σ2(Fo2) + (0.0481P)2 + 42.1978P] where P = (Fo2 + 2Fc2)/3 |
7346 reflections | (Δ/σ)max = 0.001 |
563 parameters | Δρmax = 2.73 e Å−3 |
6 restraints | Δρmin = −2.79 e Å−3 |
C44H38N82+·4I−·4H2O | V = 4831.43 (13) Å3 |
Mr = 1258.49 | Z = 4 |
Monoclinic, P21/n | Cu Kα radiation |
a = 24.3331 (4) Å | µ = 20.65 mm−1 |
b = 6.5209 (1) Å | T = 100 K |
c = 30.5663 (5) Å | 0.20 × 0.15 × 0.08 mm |
β = 95.025 (1)° |
Bruker X8 KappaCCD APEXII diffractometer | 7346 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1997) | 7013 reflections with I > 2σ(I) |
Tmin = 0.104, Tmax = 0.289 | Rint = 0.039 |
47661 measured reflections |
R[F2 > 2σ(F2)] = 0.044 | 6 restraints |
wR(F2) = 0.110 | H-atom parameters constrained |
S = 1.09 | w = 1/[σ2(Fo2) + (0.0481P)2 + 42.1978P] where P = (Fo2 + 2Fc2)/3 |
7346 reflections | Δρmax = 2.73 e Å−3 |
563 parameters | Δρmin = −2.79 e Å−3 |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
N1 | 0.46552 (19) | 0.1385 (8) | 0.05010 (16) | 0.0156 (11) | |
N2 | 0.43689 (19) | −0.2216 (8) | −0.00352 (16) | 0.0161 (11) | |
H2 | 0.4640 | −0.1320 | −0.0009 | 0.019* | |
N3 | 0.24687 (19) | −0.1678 (8) | 0.12933 (15) | 0.0145 (11) | |
N4 | 0.6006 (2) | 0.7920 (9) | 0.17192 (18) | 0.0247 (12) | |
C1 | 0.4873 (2) | 0.2957 (9) | 0.0757 (2) | 0.0160 (13) | |
C2 | 0.4553 (2) | 0.3298 (10) | 0.1131 (2) | 0.0178 (13) | |
H2A | 0.4630 | 0.4267 | 0.1360 | 0.021* | |
C3 | 0.4128 (2) | 0.1972 (10) | 0.1089 (2) | 0.0172 (13) | |
H3 | 0.3839 | 0.1849 | 0.1278 | 0.021* | |
C4 | 0.4196 (2) | 0.0765 (9) | 0.06957 (19) | 0.0146 (12) | |
C5 | 0.3859 (2) | −0.0908 (9) | 0.05650 (19) | 0.0137 (12) | |
C6 | 0.3943 (2) | −0.2300 (9) | 0.02283 (19) | 0.0153 (13) | |
C7 | 0.3613 (2) | −0.4026 (10) | 0.0091 (2) | 0.0173 (13) | |
H7 | 0.3295 | −0.4488 | 0.0222 | 0.021* | |
C8 | 0.3828 (2) | −0.4894 (10) | −0.0258 (2) | 0.0192 (14) | |
H8 | 0.3687 | −0.6060 | −0.0417 | 0.023* | |
C9 | 0.4311 (2) | −0.3731 (9) | −0.0346 (2) | 0.0174 (13) | |
C10 | 0.5360 (2) | 0.4044 (9) | 0.0686 (2) | 0.0161 (13) | |
C11 | 0.3363 (2) | −0.1240 (9) | 0.08095 (19) | 0.0133 (12) | |
C12 | 0.2939 (2) | 0.0224 (9) | 0.07885 (19) | 0.0139 (12) | |
H12 | 0.2955 | 0.1386 | 0.0603 | 0.017* | |
C13 | 0.2500 (2) | −0.0028 (9) | 0.1039 (2) | 0.0171 (13) | |
H13 | 0.2217 | 0.0980 | 0.1030 | 0.021* | |
C14 | 0.2850 (2) | −0.3158 (9) | 0.13028 (19) | 0.0155 (12) | |
H14 | 0.2808 | −0.4357 | 0.1473 | 0.019* | |
C15 | 0.3306 (2) | −0.2950 (9) | 0.10647 (19) | 0.0165 (13) | |
H15 | 0.3579 | −0.3992 | 0.1078 | 0.020* | |
C16 | 0.1992 (2) | −0.1914 (10) | 0.1559 (2) | 0.0211 (14) | |
H16A | 0.1680 | −0.2503 | 0.1376 | 0.032* | |
H16B | 0.1888 | −0.0569 | 0.1668 | 0.032* | |
H16C | 0.2093 | −0.2825 | 0.1808 | 0.032* | |
C17 | 0.5575 (2) | 0.5474 (9) | 0.1041 (2) | 0.0155 (12) | |
C18 | 0.6056 (2) | 0.4934 (10) | 0.1296 (2) | 0.0201 (14) | |
H18 | 0.6243 | 0.3703 | 0.1234 | 0.024* | |
C19 | 0.6261 (3) | 0.6164 (10) | 0.1634 (2) | 0.0229 (14) | |
H19 | 0.6585 | 0.5771 | 0.1809 | 0.027* | |
C20 | 0.5550 (3) | 0.8516 (10) | 0.1477 (2) | 0.0249 (15) | |
H20 | 0.5381 | 0.9781 | 0.1540 | 0.030* | |
C21 | 0.5323 (3) | 0.7323 (10) | 0.1136 (2) | 0.0212 (14) | |
H21 | 0.4996 | 0.7753 | 0.0968 | 0.025* | |
C22 | 0.6256 (3) | 0.9247 (14) | 0.2076 (3) | 0.045 (2) | |
H22A | 0.6552 | 1.0066 | 0.1967 | 0.068* | |
H22B | 0.6407 | 0.8391 | 0.2322 | 0.068* | |
H22C | 0.5973 | 1.0162 | 0.2177 | 0.068* | |
N5 | 0.51171 (18) | 0.1474 (7) | 0.44291 (15) | 0.0119 (10) | |
N6 | 0.54933 (18) | 0.2175 (7) | 0.53522 (15) | 0.0120 (10) | |
H6 | 0.5312 | 0.1189 | 0.5205 | 0.014* | |
N7 | 0.6882 (2) | 0.8716 (8) | 0.43573 (17) | 0.0179 (11) | |
N8 | 0.4068 (2) | −0.1873 (8) | 0.25635 (16) | 0.0205 (12) | |
C23 | 0.4912 (2) | 0.0947 (9) | 0.40114 (18) | 0.0139 (12) | |
C24 | 0.5102 (3) | 0.2350 (10) | 0.3689 (2) | 0.0201 (14) | |
H24 | 0.5004 | 0.2334 | 0.3381 | 0.024* | |
C25 | 0.5444 (3) | 0.3681 (9) | 0.3913 (2) | 0.0182 (13) | |
H25 | 0.5647 | 0.4756 | 0.3793 | 0.022* | |
C26 | 0.5441 (2) | 0.3150 (9) | 0.43721 (19) | 0.0126 (12) | |
C27 | 0.5742 (2) | 0.4198 (9) | 0.47193 (19) | 0.0130 (12) | |
C28 | 0.5731 (2) | 0.3828 (9) | 0.51656 (19) | 0.0115 (12) | |
C29 | 0.5950 (2) | 0.5102 (9) | 0.5519 (2) | 0.0145 (13) | |
H29 | 0.6135 | 0.6372 | 0.5490 | 0.017* | |
C30 | 0.5850 (2) | 0.4185 (9) | 0.59024 (19) | 0.0138 (12) | |
H30 | 0.5943 | 0.4717 | 0.6189 | 0.017* | |
C31 | 0.5579 (2) | 0.2279 (9) | 0.57998 (19) | 0.0138 (12) | |
C32 | 0.4584 (2) | −0.0811 (9) | 0.39060 (19) | 0.0131 (12) | |
C33 | 0.6133 (2) | 0.5840 (9) | 0.45991 (18) | 0.0131 (12) | |
C34 | 0.5960 (2) | 0.7561 (9) | 0.4354 (2) | 0.0170 (13) | |
H34 | 0.5578 | 0.7760 | 0.4270 | 0.020* | |
C35 | 0.6340 (3) | 0.8974 (10) | 0.4233 (2) | 0.0191 (13) | |
H35 | 0.6220 | 1.0132 | 0.4062 | 0.023* | |
C36 | 0.7057 (2) | 0.7111 (10) | 0.4609 (2) | 0.0198 (14) | |
H36 | 0.7438 | 0.6983 | 0.4704 | 0.024* | |
C37 | 0.6690 (2) | 0.5647 (9) | 0.4733 (2) | 0.0160 (12) | |
H37 | 0.6819 | 0.4514 | 0.4909 | 0.019* | |
C38 | 0.7285 (3) | 1.0258 (11) | 0.4241 (2) | 0.0287 (16) | |
H38A | 0.7390 | 1.1123 | 0.4496 | 0.043* | |
H38B | 0.7121 | 1.1112 | 0.4000 | 0.043* | |
H38C | 0.7613 | 0.9567 | 0.4148 | 0.043* | |
C39 | 0.4407 (2) | −0.1190 (9) | 0.34373 (19) | 0.0141 (12) | |
C40 | 0.3846 (2) | −0.1374 (9) | 0.3289 (2) | 0.0165 (13) | |
H40 | 0.3575 | −0.1257 | 0.3493 | 0.020* | |
C41 | 0.3686 (3) | −0.1720 (9) | 0.2855 (2) | 0.0194 (13) | |
H41 | 0.3306 | −0.1852 | 0.2760 | 0.023* | |
C42 | 0.4608 (3) | −0.1704 (10) | 0.2694 (2) | 0.0212 (14) | |
H42 | 0.4871 | −0.1805 | 0.2483 | 0.025* | |
C43 | 0.4784 (3) | −0.1387 (9) | 0.3127 (2) | 0.0197 (14) | |
H43 | 0.5168 | −0.1302 | 0.3214 | 0.024* | |
C44 | 0.3891 (3) | −0.2322 (11) | 0.2096 (2) | 0.0309 (17) | |
H44A | 0.4215 | −0.2368 | 0.1927 | 0.046* | |
H44B | 0.3639 | −0.1246 | 0.1978 | 0.046* | |
H44C | 0.3701 | −0.3650 | 0.2075 | 0.046* | |
I1 | 0.195450 (15) | 0.46659 (6) | 0.048331 (12) | 0.01785 (12) | |
I2 | 0.294854 (17) | 0.24104 (7) | 0.209298 (13) | 0.02653 (13) | |
I3 | 0.52507 (2) | 0.35907 (8) | 0.235129 (16) | 0.04044 (15) | |
I4 | 0.68215 (2) | 0.99182 (7) | 0.09052 (2) | 0.04330 (16) | |
O1W | 0.09764 (19) | 0.8556 (8) | 0.20744 (16) | 0.0320 (11) | |
O2W | 0.6112 (3) | 0.6675 (15) | 0.3155 (3) | 0.088 (3) | |
O3W | 0.7269 (5) | 0.367 (2) | 0.2106 (6) | 0.075 (4) | 0.50 |
O4W | 0.6235 (5) | 0.0915 (17) | 0.3155 (3) | 0.040 (3) | 0.50 |
O5W | 0.7152 (6) | 0.225 (2) | 0.2792 (6) | 0.074 (4) | 0.50 |
O6W | 0.7762 (5) | 0.078 (2) | 0.1729 (7) | 0.093 (6) | 0.50 |
U11 | U22 | U33 | U12 | U13 | U23 | |
N1 | 0.010 (2) | 0.020 (3) | 0.017 (3) | −0.001 (2) | 0.0031 (19) | 0.001 (2) |
N2 | 0.010 (2) | 0.021 (3) | 0.018 (3) | −0.003 (2) | 0.006 (2) | −0.002 (2) |
N3 | 0.010 (2) | 0.022 (3) | 0.012 (2) | −0.001 (2) | 0.0000 (19) | −0.002 (2) |
N4 | 0.019 (3) | 0.033 (3) | 0.023 (3) | −0.008 (2) | 0.004 (2) | −0.008 (3) |
C1 | 0.012 (3) | 0.018 (3) | 0.018 (3) | 0.004 (2) | 0.005 (2) | −0.002 (3) |
C2 | 0.019 (3) | 0.018 (3) | 0.017 (3) | 0.001 (3) | 0.007 (2) | −0.005 (3) |
C3 | 0.013 (3) | 0.021 (3) | 0.018 (3) | 0.000 (3) | 0.006 (2) | 0.001 (3) |
C4 | 0.011 (3) | 0.016 (3) | 0.017 (3) | 0.001 (2) | 0.003 (2) | 0.002 (3) |
C5 | 0.010 (3) | 0.016 (3) | 0.015 (3) | 0.004 (2) | 0.005 (2) | 0.004 (3) |
C6 | 0.010 (3) | 0.021 (3) | 0.016 (3) | 0.002 (2) | 0.004 (2) | 0.003 (3) |
C7 | 0.010 (3) | 0.023 (3) | 0.019 (3) | −0.003 (3) | 0.005 (2) | −0.002 (3) |
C8 | 0.014 (3) | 0.023 (3) | 0.021 (3) | −0.004 (3) | 0.002 (2) | −0.002 (3) |
C9 | 0.014 (3) | 0.019 (3) | 0.019 (3) | 0.000 (2) | −0.002 (2) | 0.000 (3) |
C10 | 0.009 (3) | 0.018 (3) | 0.022 (3) | 0.001 (2) | 0.004 (2) | 0.003 (3) |
C11 | 0.008 (3) | 0.019 (3) | 0.013 (3) | −0.004 (2) | 0.001 (2) | −0.004 (2) |
C12 | 0.012 (3) | 0.015 (3) | 0.014 (3) | 0.000 (2) | 0.003 (2) | 0.004 (2) |
C13 | 0.012 (3) | 0.017 (3) | 0.022 (3) | 0.003 (2) | 0.001 (2) | 0.002 (3) |
C14 | 0.017 (3) | 0.017 (3) | 0.012 (3) | −0.003 (3) | 0.000 (2) | 0.001 (2) |
C15 | 0.012 (3) | 0.019 (3) | 0.018 (3) | 0.003 (2) | −0.001 (2) | −0.002 (3) |
C16 | 0.017 (3) | 0.026 (4) | 0.021 (3) | −0.004 (3) | 0.008 (3) | 0.002 (3) |
C17 | 0.012 (3) | 0.016 (3) | 0.019 (3) | −0.003 (2) | 0.006 (2) | 0.000 (3) |
C18 | 0.015 (3) | 0.022 (3) | 0.024 (3) | 0.003 (3) | 0.006 (3) | 0.000 (3) |
C19 | 0.019 (3) | 0.029 (4) | 0.020 (3) | 0.002 (3) | −0.001 (3) | −0.006 (3) |
C20 | 0.024 (3) | 0.019 (3) | 0.033 (4) | 0.002 (3) | 0.012 (3) | −0.006 (3) |
C21 | 0.016 (3) | 0.023 (3) | 0.026 (4) | 0.002 (3) | 0.004 (3) | 0.000 (3) |
C22 | 0.040 (5) | 0.048 (5) | 0.046 (5) | −0.003 (4) | −0.001 (4) | −0.028 (4) |
N5 | 0.010 (2) | 0.012 (2) | 0.014 (3) | −0.0003 (19) | 0.0006 (19) | 0.000 (2) |
N6 | 0.010 (2) | 0.015 (3) | 0.010 (2) | −0.006 (2) | −0.0029 (18) | −0.001 (2) |
N7 | 0.016 (3) | 0.015 (3) | 0.024 (3) | −0.006 (2) | 0.007 (2) | −0.001 (2) |
N8 | 0.031 (3) | 0.017 (3) | 0.011 (3) | −0.002 (2) | −0.007 (2) | −0.002 (2) |
C23 | 0.014 (3) | 0.015 (3) | 0.012 (3) | 0.000 (2) | 0.000 (2) | 0.000 (2) |
C24 | 0.025 (3) | 0.021 (3) | 0.014 (3) | −0.004 (3) | 0.000 (3) | 0.001 (3) |
C25 | 0.022 (3) | 0.015 (3) | 0.018 (3) | −0.005 (3) | 0.000 (3) | 0.002 (3) |
C26 | 0.010 (3) | 0.013 (3) | 0.015 (3) | 0.002 (2) | 0.001 (2) | 0.001 (2) |
C27 | 0.012 (3) | 0.010 (3) | 0.017 (3) | −0.001 (2) | 0.000 (2) | 0.001 (2) |
C28 | 0.006 (2) | 0.012 (3) | 0.016 (3) | 0.000 (2) | −0.001 (2) | 0.002 (2) |
C29 | 0.010 (3) | 0.015 (3) | 0.019 (3) | 0.000 (2) | 0.000 (2) | −0.001 (2) |
C30 | 0.014 (3) | 0.013 (3) | 0.014 (3) | 0.000 (2) | −0.004 (2) | −0.001 (2) |
C31 | 0.008 (3) | 0.017 (3) | 0.017 (3) | 0.001 (2) | 0.001 (2) | 0.001 (2) |
C32 | 0.013 (3) | 0.014 (3) | 0.012 (3) | 0.002 (2) | 0.001 (2) | −0.002 (2) |
C33 | 0.012 (3) | 0.014 (3) | 0.013 (3) | −0.002 (2) | 0.002 (2) | −0.005 (2) |
C34 | 0.014 (3) | 0.016 (3) | 0.022 (3) | 0.000 (2) | 0.001 (2) | 0.000 (3) |
C35 | 0.021 (3) | 0.014 (3) | 0.023 (3) | 0.001 (3) | 0.003 (3) | 0.000 (3) |
C36 | 0.013 (3) | 0.021 (3) | 0.025 (3) | 0.001 (3) | 0.003 (3) | −0.003 (3) |
C37 | 0.016 (3) | 0.013 (3) | 0.018 (3) | 0.000 (2) | 0.003 (2) | −0.003 (3) |
C38 | 0.024 (4) | 0.027 (4) | 0.036 (4) | −0.009 (3) | 0.009 (3) | 0.002 (3) |
C39 | 0.020 (3) | 0.009 (3) | 0.012 (3) | −0.001 (2) | −0.002 (2) | 0.001 (2) |
C40 | 0.017 (3) | 0.014 (3) | 0.017 (3) | −0.001 (2) | −0.005 (2) | 0.005 (2) |
C41 | 0.022 (3) | 0.016 (3) | 0.020 (3) | −0.001 (3) | −0.006 (3) | 0.000 (3) |
C42 | 0.030 (4) | 0.018 (3) | 0.016 (3) | −0.001 (3) | 0.005 (3) | 0.002 (3) |
C43 | 0.020 (3) | 0.017 (3) | 0.021 (3) | −0.004 (3) | −0.003 (3) | 0.000 (3) |
C44 | 0.044 (4) | 0.031 (4) | 0.016 (3) | 0.002 (3) | −0.006 (3) | −0.005 (3) |
I1 | 0.0156 (2) | 0.0166 (2) | 0.0208 (2) | −0.00044 (15) | −0.00111 (15) | 0.00148 (15) |
I2 | 0.0291 (2) | 0.0267 (2) | 0.0232 (2) | −0.00046 (18) | −0.00126 (17) | 0.00460 (17) |
I3 | 0.0449 (3) | 0.0435 (3) | 0.0363 (3) | 0.0162 (2) | 0.0227 (2) | 0.0111 (2) |
I4 | 0.0381 (3) | 0.0211 (2) | 0.0761 (4) | 0.0003 (2) | 0.0356 (3) | 0.0008 (2) |
O1W | 0.028 (3) | 0.035 (3) | 0.033 (3) | 0.001 (2) | 0.005 (2) | −0.006 (2) |
O2W | 0.060 (5) | 0.111 (7) | 0.094 (6) | 0.011 (5) | 0.015 (4) | 0.032 (5) |
O3W | 0.026 (5) | 0.054 (6) | 0.141 (9) | 0.004 (5) | −0.019 (6) | 0.042 (7) |
O4W | 0.051 (6) | 0.040 (6) | 0.029 (6) | 0.011 (5) | 0.004 (5) | 0.001 (5) |
O5W | 0.051 (8) | 0.045 (8) | 0.125 (13) | −0.007 (6) | 0.004 (8) | −0.009 (8) |
O6W | 0.038 (7) | 0.067 (10) | 0.164 (17) | −0.012 (7) | −0.054 (9) | 0.029 (10) |
N1—C1 | 1.368 (8) | N5—C26 | 1.367 (8) |
N1—C4 | 1.373 (8) | N5—C23 | 1.373 (7) |
N2—C6 | 1.367 (8) | N6—C31 | 1.367 (8) |
N2—C9 | 1.370 (8) | N6—C28 | 1.371 (8) |
N2—H2 | 0.8800 | N6—H6 | 0.8800 |
N3—C13 | 1.334 (8) | N7—C36 | 1.347 (8) |
N3—C14 | 1.337 (8) | N7—C35 | 1.350 (8) |
N3—C16 | 1.480 (8) | N7—C38 | 1.471 (8) |
N4—C20 | 1.337 (9) | N8—C42 | 1.344 (8) |
N4—C19 | 1.339 (9) | N8—C41 | 1.347 (9) |
N4—C22 | 1.481 (9) | N8—C44 | 1.484 (8) |
C1—C10 | 1.414 (8) | C23—C32 | 1.417 (8) |
C1—C2 | 1.454 (8) | C23—C24 | 1.450 (9) |
C2—C3 | 1.347 (9) | C24—C25 | 1.348 (9) |
C2—H2A | 0.9500 | C24—H24 | 0.9500 |
C3—C4 | 1.458 (9) | C25—C26 | 1.446 (9) |
C3—H3 | 0.9500 | C25—H25 | 0.9500 |
C4—C5 | 1.401 (9) | C26—C27 | 1.413 (8) |
C5—C6 | 1.401 (9) | C27—C28 | 1.388 (8) |
C5—C11 | 1.490 (8) | C27—C33 | 1.499 (8) |
C6—C7 | 1.426 (9) | C28—C29 | 1.428 (8) |
C7—C8 | 1.353 (9) | C29—C30 | 1.358 (9) |
C7—H7 | 0.9500 | C29—H29 | 0.9500 |
C8—C9 | 1.442 (9) | C30—C31 | 1.429 (8) |
C8—H8 | 0.9500 | C30—H30 | 0.9500 |
C9—C10i | 1.384 (9) | C31—C32ii | 1.394 (9) |
C10—C9i | 1.384 (9) | C32—C31ii | 1.394 (9) |
C10—C17 | 1.489 (9) | C32—C39 | 1.480 (8) |
C11—C15 | 1.375 (9) | C33—C37 | 1.386 (8) |
C11—C12 | 1.402 (8) | C33—C34 | 1.394 (9) |
C12—C13 | 1.378 (9) | C34—C35 | 1.379 (9) |
C12—H12 | 0.9500 | C34—H34 | 0.9500 |
C13—H13 | 0.9500 | C35—H35 | 0.9500 |
C14—C15 | 1.385 (9) | C36—C37 | 1.382 (9) |
C14—H14 | 0.9500 | C36—H36 | 0.9500 |
C15—H15 | 0.9500 | C37—H37 | 0.9500 |
C16—H16A | 0.9800 | C38—H38A | 0.9800 |
C16—H16B | 0.9800 | C38—H38B | 0.9800 |
C16—H16C | 0.9800 | C38—H38C | 0.9800 |
C17—C18 | 1.393 (9) | C39—C43 | 1.383 (9) |
C17—C21 | 1.395 (9) | C39—C40 | 1.404 (8) |
C18—C19 | 1.367 (9) | C40—C41 | 1.368 (9) |
C18—H18 | 0.9500 | C40—H40 | 0.9500 |
C19—H19 | 0.9500 | C41—H41 | 0.9500 |
C20—C21 | 1.376 (10) | C42—C43 | 1.372 (9) |
C20—H20 | 0.9500 | C42—H42 | 0.9500 |
C21—H21 | 0.9500 | C43—H43 | 0.9500 |
C22—H22A | 0.9800 | C44—H44A | 0.9800 |
C22—H22B | 0.9800 | C44—H44B | 0.9800 |
C22—H22C | 0.9800 | C44—H44C | 0.9800 |
O2W···O4Wiii | 2.781 (15) | O2W···I3 | 3.684 (9) |
O2W···O6Wiv | 2.793 (15) | O6W···I4vi | 3.299 (18) |
O3W···O5Wiv | 2.730 (19) | C13···I1 | 3.691 (6) |
O3W···O6W | 2.56 (2) | C14···I2vi | 3.760 (6) |
O4W···O5W | 2.721 (19) | C44···I2 | 3.844 (7) |
O5W···O6Wiv | 2.73 (2) | C22···I3iii | 3.882 (7) |
O1W···I2v | 3.565 (5) | C36···I4vii | 3.566 (5) |
O1W···I3v | 3.594 (5) | ||
C1—N1—C4 | 105.2 (5) | C26—N5—C23 | 104.4 (5) |
C6—N2—C9 | 110.0 (5) | C31—N6—C28 | 110.2 (5) |
C6—N2—H2 | 125.0 | C31—N6—H6 | 124.9 |
C9—N2—H2 | 125.0 | C28—N6—H6 | 124.9 |
C13—N3—C14 | 121.3 (5) | C36—N7—C35 | 120.6 (5) |
C13—N3—C16 | 119.4 (5) | C36—N7—C38 | 119.1 (5) |
C14—N3—C16 | 119.2 (5) | C35—N7—C38 | 120.2 (5) |
C20—N4—C19 | 121.1 (6) | C42—N8—C41 | 120.8 (5) |
C20—N4—C22 | 120.4 (6) | C42—N8—C44 | 119.7 (6) |
C19—N4—C22 | 118.5 (6) | C41—N8—C44 | 119.5 (5) |
N1—C1—C10 | 125.1 (5) | N5—C23—C32 | 124.4 (5) |
N1—C1—C2 | 111.0 (5) | N5—C23—C24 | 111.2 (5) |
C10—C1—C2 | 123.8 (6) | C32—C23—C24 | 124.2 (5) |
C3—C2—C1 | 106.6 (5) | C25—C24—C23 | 106.3 (5) |
C3—C2—H2A | 126.7 | C25—C24—H24 | 126.8 |
C1—C2—H2A | 126.7 | C23—C24—H24 | 126.8 |
C2—C3—C4 | 106.5 (5) | C24—C25—C26 | 106.4 (5) |
C2—C3—H3 | 126.7 | C24—C25—H25 | 126.8 |
C4—C3—H3 | 126.7 | C26—C25—H25 | 126.8 |
N1—C4—C5 | 125.8 (5) | N5—C26—C27 | 124.0 (5) |
N1—C4—C3 | 110.7 (5) | N5—C26—C25 | 111.5 (5) |
C5—C4—C3 | 123.3 (5) | C27—C26—C25 | 124.5 (5) |
C6—C5—C4 | 126.4 (5) | C28—C27—C26 | 126.9 (5) |
C6—C5—C11 | 116.9 (5) | C28—C27—C33 | 115.7 (5) |
C4—C5—C11 | 116.7 (5) | C26—C27—C33 | 117.4 (5) |
N2—C6—C5 | 125.1 (5) | N6—C28—C27 | 126.2 (5) |
N2—C6—C7 | 107.1 (5) | N6—C28—C29 | 106.6 (5) |
C5—C6—C7 | 127.8 (5) | C27—C28—C29 | 127.1 (5) |
C8—C7—C6 | 108.4 (5) | C30—C29—C28 | 108.2 (5) |
C8—C7—H7 | 125.8 | C30—C29—H29 | 125.9 |
C6—C7—H7 | 125.8 | C28—C29—H29 | 125.9 |
C7—C8—C9 | 107.7 (6) | C29—C30—C31 | 108.0 (5) |
C7—C8—H8 | 126.1 | C29—C30—H30 | 126.0 |
C9—C8—H8 | 126.1 | C31—C30—H30 | 126.0 |
N2—C9—C10i | 126.6 (6) | N6—C31—C32ii | 125.8 (5) |
N2—C9—C8 | 106.7 (5) | N6—C31—C30 | 106.8 (5) |
C10i—C9—C8 | 126.7 (6) | C32ii—C31—C30 | 127.4 (5) |
C9i—C10—C1 | 126.2 (6) | C31ii—C32—C23 | 126.5 (5) |
C9i—C10—C17 | 116.7 (5) | C31ii—C32—C39 | 115.8 (5) |
C1—C10—C17 | 116.7 (5) | C23—C32—C39 | 117.7 (5) |
C15—C11—C12 | 117.9 (5) | C37—C33—C34 | 118.4 (5) |
C15—C11—C5 | 122.0 (5) | C37—C33—C27 | 119.1 (5) |
C12—C11—C5 | 120.1 (5) | C34—C33—C27 | 122.5 (5) |
C13—C12—C11 | 119.8 (5) | C35—C34—C33 | 120.2 (5) |
C13—C12—H12 | 120.1 | C35—C34—H34 | 119.9 |
C11—C12—H12 | 120.1 | C33—C34—H34 | 119.9 |
N3—C13—C12 | 120.4 (5) | N7—C35—C34 | 120.2 (6) |
N3—C13—H13 | 119.8 | N7—C35—H35 | 119.9 |
C12—C13—H13 | 119.8 | C34—C35—H35 | 119.9 |
N3—C14—C15 | 120.2 (6) | N7—C36—C37 | 121.0 (5) |
N3—C14—H14 | 119.9 | N7—C36—H36 | 119.5 |
C15—C14—H14 | 119.9 | C37—C36—H36 | 119.5 |
C11—C15—C14 | 120.2 (6) | C36—C37—C33 | 119.6 (6) |
C11—C15—H15 | 119.9 | C36—C37—H37 | 120.2 |
C14—C15—H15 | 119.9 | C33—C37—H37 | 120.2 |
N3—C16—H16A | 109.5 | N7—C38—H38A | 109.5 |
N3—C16—H16B | 109.5 | N7—C38—H38B | 109.5 |
H16A—C16—H16B | 109.5 | H38A—C38—H38B | 109.5 |
N3—C16—H16C | 109.5 | N7—C38—H38C | 109.5 |
H16A—C16—H16C | 109.5 | H38A—C38—H38C | 109.5 |
H16B—C16—H16C | 109.5 | H38B—C38—H38C | 109.5 |
C18—C17—C21 | 117.7 (6) | C43—C39—C40 | 117.1 (5) |
C18—C17—C10 | 118.3 (5) | C43—C39—C32 | 121.7 (5) |
C21—C17—C10 | 124.0 (5) | C40—C39—C32 | 121.2 (5) |
C19—C18—C17 | 120.4 (6) | C41—C40—C39 | 120.8 (6) |
C19—C18—H18 | 119.8 | C41—C40—H40 | 119.6 |
C17—C18—H18 | 119.8 | C39—C40—H40 | 119.6 |
N4—C19—C18 | 120.4 (6) | N8—C41—C40 | 120.0 (6) |
N4—C19—H19 | 119.8 | N8—C41—H41 | 120.0 |
C18—C19—H19 | 119.8 | C40—C41—H41 | 120.0 |
N4—C20—C21 | 121.0 (6) | N8—C42—C43 | 120.9 (6) |
N4—C20—H20 | 119.5 | N8—C42—H42 | 119.6 |
C21—C20—H20 | 119.5 | C43—C42—H42 | 119.6 |
C20—C21—C17 | 119.4 (6) | C42—C43—C39 | 120.4 (6) |
C20—C21—H21 | 120.3 | C42—C43—H43 | 119.8 |
C17—C21—H21 | 120.3 | C39—C43—H43 | 119.8 |
N4—C22—H22A | 109.5 | N8—C44—H44A | 109.5 |
N4—C22—H22B | 109.5 | N8—C44—H44B | 109.5 |
H22A—C22—H22B | 109.5 | H44A—C44—H44B | 109.5 |
N4—C22—H22C | 109.5 | N8—C44—H44C | 109.5 |
H22A—C22—H22C | 109.5 | H44A—C44—H44C | 109.5 |
H22B—C22—H22C | 109.5 | H44B—C44—H44C | 109.5 |
C4—N1—C1—C10 | 178.6 (6) | C26—N5—C23—C32 | 175.1 (5) |
C4—N1—C1—C2 | 1.9 (6) | C26—N5—C23—C24 | −1.3 (6) |
N1—C1—C2—C3 | −2.4 (7) | N5—C23—C24—C25 | 2.6 (7) |
C10—C1—C2—C3 | −179.2 (6) | C32—C23—C24—C25 | −173.8 (6) |
C1—C2—C3—C4 | 1.9 (7) | C23—C24—C25—C26 | −2.7 (7) |
C1—N1—C4—C5 | −175.4 (6) | C23—N5—C26—C27 | −179.2 (5) |
C1—N1—C4—C3 | −0.6 (6) | C23—N5—C26—C25 | −0.5 (6) |
C2—C3—C4—N1 | −0.9 (7) | C24—C25—C26—N5 | 2.1 (7) |
C2—C3—C4—C5 | 174.0 (6) | C24—C25—C26—C27 | −179.2 (6) |
N1—C4—C5—C6 | 3.3 (10) | N5—C26—C27—C28 | −5.3 (9) |
C3—C4—C5—C6 | −170.8 (6) | C25—C26—C27—C28 | 176.2 (6) |
N1—C4—C5—C11 | −176.9 (5) | N5—C26—C27—C33 | 172.4 (5) |
C3—C4—C5—C11 | 9.0 (8) | C25—C26—C27—C33 | −6.1 (8) |
C9—N2—C6—C5 | −176.4 (6) | C31—N6—C28—C27 | 177.9 (5) |
C9—N2—C6—C7 | 3.0 (7) | C31—N6—C28—C29 | −3.5 (6) |
C4—C5—C6—N2 | −1.5 (10) | C26—C27—C28—N6 | 11.1 (9) |
C11—C5—C6—N2 | 178.8 (5) | C33—C27—C28—N6 | −166.7 (5) |
C4—C5—C6—C7 | 179.3 (6) | C26—C27—C28—C29 | −167.3 (6) |
C11—C5—C6—C7 | −0.5 (9) | C33—C27—C28—C29 | 14.9 (8) |
N2—C6—C7—C8 | −2.3 (7) | N6—C28—C29—C30 | 1.0 (6) |
C5—C6—C7—C8 | 177.1 (6) | C27—C28—C29—C30 | 179.6 (5) |
C6—C7—C8—C9 | 0.7 (7) | C28—C29—C30—C31 | 1.7 (6) |
C6—N2—C9—C10i | 175.5 (6) | C28—N6—C31—C32ii | −177.0 (5) |
C6—N2—C9—C8 | −2.5 (7) | C28—N6—C31—C30 | 4.5 (6) |
C7—C8—C9—N2 | 1.1 (7) | C29—C30—C31—N6 | −3.8 (6) |
C7—C8—C9—C10i | −177.0 (6) | C29—C30—C31—C32ii | 177.7 (6) |
N1—C1—C10—C9i | 1.2 (10) | N5—C23—C32—C31ii | −0.5 (9) |
C2—C1—C10—C9i | 177.5 (6) | C24—C23—C32—C31ii | 175.4 (6) |
N1—C1—C10—C17 | −170.6 (6) | N5—C23—C32—C39 | −178.4 (5) |
C2—C1—C10—C17 | 5.7 (9) | C24—C23—C32—C39 | −2.5 (9) |
C6—C5—C11—C15 | 65.1 (7) | C28—C27—C33—C37 | 58.3 (7) |
C4—C5—C11—C15 | −114.7 (6) | C26—C27—C33—C37 | −119.7 (6) |
C6—C5—C11—C12 | −115.8 (6) | C28—C27—C33—C34 | −122.1 (6) |
C4—C5—C11—C12 | 64.4 (7) | C26—C27—C33—C34 | 59.9 (8) |
C15—C11—C12—C13 | 3.5 (8) | C37—C33—C34—C35 | 2.9 (9) |
C5—C11—C12—C13 | −175.7 (5) | C27—C33—C34—C35 | −176.7 (6) |
C14—N3—C13—C12 | −2.2 (8) | C36—N7—C35—C34 | −1.7 (9) |
C16—N3—C13—C12 | −180.0 (5) | C38—N7—C35—C34 | −178.0 (6) |
C11—C12—C13—N3 | −1.4 (9) | C33—C34—C35—N7 | −1.0 (9) |
C13—N3—C14—C15 | 3.7 (8) | C35—N7—C36—C37 | 2.5 (9) |
C16—N3—C14—C15 | −178.6 (5) | C38—N7—C36—C37 | 178.9 (6) |
C12—C11—C15—C14 | −2.1 (8) | N7—C36—C37—C33 | −0.5 (9) |
C5—C11—C15—C14 | 177.1 (5) | C34—C33—C37—C36 | −2.1 (9) |
N3—C14—C15—C11 | −1.4 (9) | C27—C33—C37—C36 | 177.5 (5) |
C9i—C10—C17—C18 | −64.2 (8) | C31ii—C32—C39—C43 | −120.9 (6) |
C1—C10—C17—C18 | 108.5 (6) | C23—C32—C39—C43 | 57.2 (8) |
C9i—C10—C17—C21 | 116.3 (7) | C31ii—C32—C39—C40 | 58.8 (7) |
C1—C10—C17—C21 | −71.0 (8) | C23—C32—C39—C40 | −123.0 (6) |
C21—C17—C18—C19 | 1.6 (9) | C43—C39—C40—C41 | −0.4 (9) |
C10—C17—C18—C19 | −177.9 (6) | C32—C39—C40—C41 | 179.8 (6) |
C20—N4—C19—C18 | −0.3 (10) | C42—N8—C41—C40 | 0.5 (9) |
C22—N4—C19—C18 | −177.4 (7) | C44—N8—C41—C40 | 177.8 (6) |
C17—C18—C19—N4 | −1.1 (10) | C39—C40—C41—N8 | −0.5 (9) |
C19—N4—C20—C21 | 1.2 (10) | C41—N8—C42—C43 | 0.5 (9) |
C22—N4—C20—C21 | 178.2 (7) | C44—N8—C42—C43 | −176.9 (6) |
N4—C20—C21—C17 | −0.6 (10) | N8—C42—C43—C39 | −1.4 (9) |
C18—C17—C21—C20 | −0.7 (9) | C40—C39—C43—C42 | 1.3 (9) |
C10—C17—C21—C20 | 178.8 (6) | C32—C39—C43—C42 | −178.9 (6) |
Symmetry codes: (i) −x+1, −y, −z; (ii) −x+1, −y, −z+1; (iii) x, y+1, z; (iv) −x+3/2, y+1/2, −z+1/2; (v) −x+1/2, y+1/2, −z+1/2; (vi) x, y−1, z; (vii) −x+3/2, y−1/2, −z+1/2. |
Experimental details
Crystal data | |
Chemical formula | C44H38N82+·4I−·4H2O |
Mr | 1258.49 |
Crystal system, space group | Monoclinic, P21/n |
Temperature (K) | 100 |
a, b, c (Å) | 24.3331 (4), 6.5209 (1), 30.5663 (5) |
β (°) | 95.025 (1) |
V (Å3) | 4831.43 (13) |
Z | 4 |
Radiation type | Cu Kα |
µ (mm−1) | 20.65 |
Crystal size (mm) | 0.20 × 0.15 × 0.08 |
Data collection | |
Diffractometer | Bruker X8 KappaCCD APEXII |
Absorption correction | Multi-scan (SADABS; Sheldrick, 1997) |
Tmin, Tmax | 0.104, 0.289 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 47661, 7346, 7013 |
Rint | 0.039 |
(sin θ/λ)max (Å−1) | 0.577 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.044, 0.110, 1.09 |
No. of reflections | 7346 |
No. of parameters | 563 |
No. of restraints | 6 |
H-atom treatment | H-atom parameters constrained |
w = 1/[σ2(Fo2) + (0.0481P)2 + 42.1978P] where P = (Fo2 + 2Fc2)/3 | |
Δρmax, Δρmin (e Å−3) | 2.73, −2.79 |
Computer programs: APEX2 (Bruker, 2006), SAINT-Plus (Bruker, 2005), SHELXTL (Sheldrick, 2008), DIAMOND (Brandenburg, 2009).
O2W···O4Wi | 2.781 (15) | O2W···I3 | 3.684 (9) |
O2W···O6Wii | 2.793 (15) | O6W···I4iv | 3.299 (18) |
O3W···O5Wii | 2.730 (19) | C13···I1 | 3.691 (6) |
O3W···O6W | 2.56 (2) | C14···I2iv | 3.760 (6) |
O4W···O5W | 2.721 (19) | C44···I2 | 3.844 (7) |
O5W···O6Wii | 2.73 (2) | C22···I3i | 3.882 (7) |
O1W···I2iii | 3.565 (5) | C36···I4v | 3.566 (5) |
O1W···I3iii | 3.594 (5) |
Symmetry codes: (i) x, y+1, z; (ii) −x+3/2, y+1/2, −z+1/2; (iii) −x+1/2, y+1/2, −z+1/2; (iv) x, y−1, z; (v) −x+3/2, y−1/2, −z+1/2. |
Acknowledgements
We are grateful to Fundação para a Ciência e a Tecnologia (FCT, Portugal) for their general financial support through the R&D project PTDC/QUI/65228/2006, for the PhD and postdoctoral research grants Nos. SFRH/BD/64526/2009 (to LMOL) and SFRH/BPD/63736/2009 (to JAF), and for specific funding toward the purchase of the single-crystal diffractometer.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
With the increasing number of antibiotic-resistant strains of microorganisms it is imperative to find alternative treatments for microbial infections (Alves et al., 2008). Photodynamic therapy is a promising non-antibiotic approach to photoinactivate antibiotic-multi-resistant pathogenic microorganisms. The photodynamic destruction of microorganisms is based on the ability of certain photosensitizers, when activated by light, generate reactive oxygen species that are able to destroy or affect bacterial membranes (Carvalho et al., 2009). For example, studies using cationic meso-substituted porphyrins acting as photosensitizers revealed interesting results in the destruction of Gram-positive and Gram-negative bacteria (Alves et al., 2009; Banfi et al., 2006; Merchat et al., 1996). The compound 5,10,15,20-tetrakis(1-methylpyridinium-4-yl)porphyrin (Gomes et al., 2011) is one of the most used photosensitizers in the photo-inactivation studies of microorganisms. Results have shown that the cationic conjugates are able to efficiently photosensitize different types of microorganisms (Gomes et al., 2011; Tomé et al., 2004; Alves et al., 2008; Yu et al., 2009). Following our on-going interest on organic crystals (Paz et al., 2002; Paz & Klinowski, 2003) and in water clusters confined in organic/hybrid matrices (Shi et al., 2008), here we wish to describe the crystal structure of the title compound.
The asymmetric unit (Fig. 1) of the title compound, (C44H38N8)I4.4H2O, comprises two distinct halves of centrosymmetric tetracationic porphyrin molecules, whose charge is balanced by four iodide anions, plus four water molecules of crystallization. The porphyrin rings are planar (with deviations from planarity smaller than ca 0.16 Å) subtending angles with the substituent pyridinium rings which range from ca 56 to ca 68°. The crystal structure is rich in weak supramolecular interactions such as π–π stacking and C—H···π interactions: there are two π–π stacking interactions between adjacent pyrrole rings [Cg···Cg distances of 3.762 (4) and 4.108 (4) Å], and there is a single C35—H35···π interaction [C···Cg of 3.522 (7) Å] between a hydrogen from the pyridinium ring and a pyrrole ring (interactions not shown). These supramolecular interactions contribute to the formation of columns of porphyrin molecules which are parallel to the b axis as depicted in Fig. 2. These columnar arrangements close pack in the ac plane leading to the formation of one-dimensional channels which, due to the need of close proximity of the iodide anions with the pyridinium rings, are instead filled with disordered water molecules of crystallization engaged in hydrogen bonding interactions (Table 1 and Figs 2 and 3). We note that a sole water molecule (O1W) is located between two iodide anions (I2 and I3) and outside the aforementioned channel, deeply embedded into the hydrophobic portion of the crystal structure. The remaining three water molecules are distributed among five independent crystallographic sites which may be involved in several O—H···O hydrogen bonding interactions as depicted in Fig. 3 (see Table 1 for geometric details). It is also interesting to note that only one iodide anion (I1) is not close to water molecules, participating instead in several short contacts with the porphyrin cations, among which a C—H···I- weak hydrogen interaction (dD···A = 3.691 (6) Å) arises as the strongest and more directional one (green dashed lines in Fig. 2). I2 to I4 are also involved in such type of interactions (not shown) as summarized in Table 1.