organic compounds
3,3′-(Ethane-1,2-diyl)bis(3,4-dihydro-2H-1,3-benzoxazine)
aDepartamento de Química, Universidad Nacional de Colombia, Ciudad Universitaria, Bogotá, Colombia, and bInstitute of Physics ASCR, v.v.i., Na Slovance 2, 182 21 Praha 8, Czech Republic
*Correspondence e-mail: ariverau@unal.edu.co
The title compound, C18H20N2O2, was prepared by Mannich-type reaction of phenol, ethane-1,2-diamine and formaldehyde. The heterocyclic rings adopt half-chair conformations. The acyclic methylene groups attached to the N atoms are in an axial position. In the crystal, weak C—H⋯O hydrogen bonds link the molecules into dimers. These dimers are further connected via C—H⋯π contacts.
Related literature
For related structures see: Rivera et al. (2011, 2010). For the preparation of the title compound, see: Rivera et al. (1989). For ring conformations, see Cremer & Pople (1975). For weak hydrogen bonds, see: Desiraju & Steiner (1999).
Experimental
Crystal data
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Refinement
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Data collection: CrysAlis PRO (Agilent, 2010); cell CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SIR2002 (Burla et al., 2003); program(s) used to refine structure: JANA2006 (Petříček et al., 2006); molecular graphics: DIAMOND (Brandenburg & Putz, 2005); software used to prepare material for publication: JANA2006.
Supporting information
10.1107/S1600536811053530/bt5748sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536811053530/bt5748Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536811053530/bt5748Isup3.cml
To a stirred mixture of ethane-1,2-diamine (0.34 ml, 5 mmol) and phenol (0.94 g, 10 mmol) dissolved in dioxane (10 ml) was added dropwise an aqueous solution of formaldehyde (1.5 ml, 20 mmol). The reaction mixture was stirred for4 h. at room temperature. The resultant precipitate was collected, washed with water, dried in vacuum and recrystallized from ethanol to give title compound.
All H atoms atoms were positioned geometrically and treated as riding on their parent atoms. The isotropic atomic displacement parameters of hydrogen atoms were evaluated as 1.2×Ueq of the parent atom. As the structure contains only light atoms, the Friedel-pair reflections were merged and the
has not been determined.Data collection: CrysAlis PRO (Agilent, 2010); cell
CrysAlis PRO (Agilent, 2010); data reduction: CrysAlis PRO (Agilent, 2010); program(s) used to solve structure: SIR2002 (Burla et al., 2003); program(s) used to refine structure: JANA2006 (Petříček et al., 2006); molecular graphics: DIAMOND (Brandenburg & Putz, 2005); software used to prepare material for publication: JANA2006 (Petříček et al., 2006).Fig. 1. A view of (I) with the numbering scheme.displacement ellipsoids are drawn at the 50% probability level. | |
Fig. 2. Packing of the molecules of the title compound view along b axis. |
C18H20N2O2 | F(000) = 316 |
Mr = 296.4 | Dx = 1.347 Mg m−3 |
Monoclinic, P21 | Cu Kα radiation, λ = 1.5418 Å |
Hall symbol: P 2yb | Cell parameters from 1061 reflections |
a = 10.868 (2) Å | θ = 3.4–65.5° |
b = 5.1693 (13) Å | µ = 0.71 mm−1 |
c = 13.327 (3) Å | T = 120 K |
β = 102.623 (18)° | Needle, colourless |
V = 730.6 (3) Å3 | 0.97 × 0.10 × 0.04 mm |
Z = 2 |
Agilent Xcalibur diffractometer with an Atlas (Gemini ultra Cu) detector | 1341 independent reflections |
Radiation source: Enhance Ultra (Cu) X-ray Source | 785 reflections with I > 3σ(I) |
Mirror monochromator | Rint = 0.079 |
Detector resolution: 10.3784 pixels mm-1 | θmax = 65.7°, θmin = 3.4° |
Rotation method data acquisition using ω scans | h = −12→9 |
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2010) | k = −4→5 |
Tmin = 0.77, Tmax = 1 | l = −15→15 |
2799 measured reflections |
Refinement on F2 | 81 constraints |
R[F2 > 2σ(F2)] = 0.067 | H-atom parameters constrained |
wR(F2) = 0.171 | Weighting scheme based on measured s.u.'s w = 1/[σ2(I) + 0.0016I2] |
S = 1.38 | (Δ/σ)max = 0.004 |
1341 reflections | Δρmax = 0.28 e Å−3 |
199 parameters | Δρmin = −0.25 e Å−3 |
0 restraints |
C18H20N2O2 | V = 730.6 (3) Å3 |
Mr = 296.4 | Z = 2 |
Monoclinic, P21 | Cu Kα radiation |
a = 10.868 (2) Å | µ = 0.71 mm−1 |
b = 5.1693 (13) Å | T = 120 K |
c = 13.327 (3) Å | 0.97 × 0.10 × 0.04 mm |
β = 102.623 (18)° |
Agilent Xcalibur diffractometer with an Atlas (Gemini ultra Cu) detector | 1341 independent reflections |
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2010) | 785 reflections with I > 3σ(I) |
Tmin = 0.77, Tmax = 1 | Rint = 0.079 |
2799 measured reflections |
R[F2 > 2σ(F2)] = 0.067 | 0 restraints |
wR(F2) = 0.171 | H-atom parameters constrained |
S = 1.38 | Δρmax = 0.28 e Å−3 |
1341 reflections | Δρmin = −0.25 e Å−3 |
199 parameters |
Experimental. CrysAlisPro (Agilent, 2010) Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm. |
Refinement. The refinement was carried out against all reflections. The conventional R-factor is always based on F. The goodness of fit as well as the weighted R-factor are based on F and F2 for refinement carried out on F and F2, respectively. The threshold expression is used only for calculating R-factors etc. and it is not relevant to the choice of reflections for refinement. The program used for refinement, Jana2006, uses the weighting scheme based on the experimental expectations, see _refine_ls_weighting_details, that does not force S to be one. Therefore the values of S are usually larger than the ones from the SHELX program. |
x | y | z | Uiso*/Ueq | ||
C1 | 0.9998 (6) | 0.619 (2) | 0.7044 (5) | 0.038 (2) | |
N1 | 1.0853 (5) | 0.4006 (19) | 0.7006 (4) | 0.040 (2) | |
C2 | 1.2051 (7) | 0.420 (2) | 0.7681 (6) | 0.049 (3) | |
O1 | 1.2790 (5) | 0.6444 (18) | 0.7528 (4) | 0.0482 (19) | |
C3 | 1.2853 (7) | 0.677 (2) | 0.6506 (5) | 0.039 (3) | |
C4 | 1.3740 (7) | 0.854 (2) | 0.6314 (6) | 0.050 (3) | |
C5 | 1.3841 (7) | 0.898 (2) | 0.5301 (6) | 0.051 (3) | |
C6 | 1.3057 (7) | 0.766 (2) | 0.4522 (6) | 0.049 (3) | |
C7 | 1.2171 (7) | 0.595 (2) | 0.4717 (6) | 0.046 (3) | |
C8 | 1.2051 (7) | 0.549 (2) | 0.5724 (5) | 0.036 (2) | |
C9 | 1.1083 (7) | 0.361 (2) | 0.5963 (5) | 0.040 (3) | |
C10 | 0.9615 (6) | 0.630 (2) | 0.8071 (5) | 0.039 (2) | |
N2 | 0.8679 (5) | 0.8366 (19) | 0.8073 (4) | 0.036 (2) | |
C11 | 0.8763 (7) | 0.948 (2) | 0.9069 (5) | 0.039 (3) | |
O2 | 0.8508 (4) | 0.7615 (18) | 0.9838 (3) | 0.0389 (16) | |
C12 | 0.7491 (7) | 0.605 (2) | 0.9472 (5) | 0.036 (2) | |
C13 | 0.7116 (6) | 0.445 (2) | 1.0211 (5) | 0.037 (2) | |
C14 | 0.6127 (7) | 0.273 (2) | 0.9901 (6) | 0.043 (3) | |
C15 | 0.5531 (7) | 0.262 (2) | 0.8873 (5) | 0.039 (2) | |
C16 | 0.5905 (6) | 0.416 (2) | 0.8150 (5) | 0.040 (3) | |
C17 | 0.6897 (6) | 0.589 (2) | 0.8434 (5) | 0.033 (2) | |
C18 | 0.7386 (6) | 0.756 (2) | 0.7673 (5) | 0.035 (2) | |
H1a | 0.925907 | 0.601938 | 0.65019 | 0.0451* | |
H1b | 1.040864 | 0.777887 | 0.693451 | 0.0451* | |
H2a | 1.252659 | 0.265585 | 0.763506 | 0.0584* | |
H2b | 1.195273 | 0.416764 | 0.837985 | 0.0584* | |
H4 | 1.427396 | 0.94568 | 0.687131 | 0.0595* | |
H5 | 1.444994 | 1.018264 | 0.5152 | 0.0611* | |
H6 | 1.313009 | 0.793375 | 0.382469 | 0.0593* | |
H7 | 1.163036 | 0.505915 | 0.415763 | 0.0546* | |
H9a | 1.030594 | 0.380027 | 0.546277 | 0.0478* | |
H9b | 1.136814 | 0.186835 | 0.590176 | 0.0478* | |
H10a | 0.926386 | 0.466841 | 0.820454 | 0.0473* | |
H10b | 1.034626 | 0.662279 | 0.860732 | 0.0473* | |
H11a | 0.958427 | 1.021981 | 0.930714 | 0.0474* | |
H11b | 0.818703 | 1.090401 | 0.901728 | 0.0474* | |
H13 | 0.754437 | 0.454456 | 1.092073 | 0.0449* | |
H14 | 0.585732 | 0.163708 | 1.039393 | 0.0519* | |
H15 | 0.484253 | 0.143471 | 0.865763 | 0.0472* | |
H16 | 0.547427 | 0.403116 | 0.744117 | 0.0481* | |
H18a | 0.733488 | 0.661676 | 0.70447 | 0.0422* | |
H18b | 0.685945 | 0.905848 | 0.750886 | 0.0422* |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.041 (4) | 0.046 (4) | 0.027 (3) | 0.005 (4) | 0.010 (3) | 0.005 (3) |
N1 | 0.042 (3) | 0.041 (3) | 0.038 (4) | 0.008 (3) | 0.012 (3) | 0.002 (3) |
C2 | 0.058 (5) | 0.053 (5) | 0.037 (4) | 0.011 (5) | 0.013 (4) | 0.010 (4) |
O1 | 0.049 (3) | 0.064 (3) | 0.029 (3) | 0.002 (3) | 0.003 (2) | −0.004 (3) |
C3 | 0.044 (5) | 0.044 (4) | 0.029 (4) | −0.002 (4) | 0.008 (3) | −0.001 (3) |
C4 | 0.039 (4) | 0.050 (5) | 0.059 (6) | −0.001 (4) | 0.009 (4) | −0.017 (4) |
C5 | 0.053 (5) | 0.035 (4) | 0.068 (6) | −0.005 (4) | 0.022 (4) | −0.006 (4) |
C6 | 0.060 (5) | 0.040 (4) | 0.053 (5) | 0.003 (5) | 0.023 (4) | 0.004 (4) |
C7 | 0.054 (5) | 0.040 (4) | 0.043 (4) | 0.002 (4) | 0.010 (4) | −0.001 (4) |
C8 | 0.045 (4) | 0.034 (4) | 0.028 (4) | 0.004 (4) | 0.009 (3) | −0.002 (3) |
C9 | 0.047 (5) | 0.035 (4) | 0.040 (4) | −0.002 (3) | 0.014 (3) | −0.004 (3) |
C10 | 0.048 (4) | 0.044 (4) | 0.025 (4) | 0.006 (4) | 0.006 (3) | 0.003 (3) |
N2 | 0.036 (3) | 0.041 (3) | 0.033 (4) | 0.003 (3) | 0.010 (3) | 0.002 (3) |
C11 | 0.042 (4) | 0.034 (4) | 0.042 (4) | −0.003 (4) | 0.008 (3) | 0.004 (3) |
O2 | 0.046 (3) | 0.036 (2) | 0.032 (3) | −0.008 (3) | 0.004 (2) | −0.001 (2) |
C12 | 0.039 (4) | 0.033 (4) | 0.035 (4) | 0.000 (4) | 0.009 (3) | −0.001 (3) |
C13 | 0.043 (4) | 0.046 (4) | 0.024 (4) | 0.003 (4) | 0.011 (3) | −0.003 (3) |
C14 | 0.050 (5) | 0.041 (4) | 0.041 (4) | −0.001 (4) | 0.016 (3) | −0.004 (4) |
C15 | 0.044 (4) | 0.035 (4) | 0.039 (4) | −0.004 (4) | 0.008 (3) | −0.001 (3) |
C16 | 0.043 (4) | 0.042 (4) | 0.035 (4) | 0.004 (4) | 0.008 (3) | −0.004 (3) |
C17 | 0.038 (4) | 0.039 (4) | 0.022 (3) | 0.003 (4) | 0.005 (3) | −0.007 (3) |
C18 | 0.046 (4) | 0.030 (3) | 0.028 (4) | 0.008 (4) | 0.006 (3) | 0.006 (3) |
C1—N1 | 1.471 (13) | C10—N2 | 1.474 (12) |
C1—C10 | 1.516 (10) | C10—H10a | 0.96 |
C1—H1a | 0.96 | C10—H10b | 0.96 |
C1—H1b | 0.96 | N2—C11 | 1.431 (10) |
N1—C2 | 1.416 (9) | N2—C18 | 1.450 (9) |
N1—C9 | 1.480 (10) | C11—O2 | 1.475 (11) |
C2—O1 | 1.451 (13) | C11—H11a | 0.96 |
C2—H2a | 0.96 | C11—H11b | 0.96 |
C2—H2b | 0.96 | O2—C12 | 1.370 (10) |
O1—C3 | 1.388 (9) | C12—C13 | 1.415 (12) |
C3—C4 | 1.394 (13) | C12—C17 | 1.395 (9) |
C3—C8 | 1.373 (11) | C13—C14 | 1.386 (12) |
C4—C5 | 1.397 (12) | C13—H13 | 0.96 |
C4—H4 | 0.96 | C14—C15 | 1.383 (9) |
C5—C6 | 1.373 (12) | C14—H14 | 0.96 |
C5—H5 | 0.96 | C15—C16 | 1.378 (12) |
C6—C7 | 1.373 (13) | C15—H15 | 0.96 |
C6—H6 | 0.96 | C16—C17 | 1.390 (12) |
C7—C8 | 1.397 (11) | C16—H16 | 0.96 |
C7—H7 | 0.96 | C17—C18 | 1.514 (12) |
C8—C9 | 1.518 (13) | C18—H18a | 0.96 |
C9—H9a | 0.96 | C18—H18b | 0.96 |
C9—H9b | 0.96 | ||
N1—C1—C10 | 111.1 (7) | C1—C10—N2 | 110.8 (7) |
N1—C1—H1a | 109.4711 | C1—C10—H10a | 109.4713 |
N1—C1—H1b | 109.4709 | C1—C10—H10b | 109.4708 |
C10—C1—H1a | 109.4717 | N2—C10—H10a | 109.4714 |
C10—C1—H1b | 109.4713 | N2—C10—H10b | 109.4714 |
H1a—C1—H1b | 107.7691 | H10a—C10—H10b | 108.1247 |
C1—N1—C2 | 115.1 (8) | C10—N2—C11 | 112.8 (6) |
C1—N1—C9 | 112.2 (6) | C10—N2—C18 | 113.9 (8) |
C2—N1—C9 | 106.6 (6) | C11—N2—C18 | 108.4 (6) |
N1—C2—O1 | 115.3 (7) | N2—C11—O2 | 113.5 (8) |
N1—C2—H2a | 109.4712 | N2—C11—H11a | 109.4711 |
N1—C2—H2b | 109.4708 | N2—C11—H11b | 109.4713 |
O1—C2—H2a | 109.4715 | O2—C11—H11a | 109.4716 |
O1—C2—H2b | 109.4712 | O2—C11—H11b | 109.4711 |
H2a—C2—H2b | 102.9256 | H11a—C11—H11b | 105.115 |
C2—O1—C3 | 112.5 (7) | C11—O2—C12 | 113.3 (5) |
O1—C3—C4 | 116.4 (7) | O2—C12—C13 | 115.5 (6) |
O1—C3—C8 | 121.8 (8) | O2—C12—C17 | 123.5 (8) |
C4—C3—C8 | 121.8 (7) | C13—C12—C17 | 120.9 (8) |
C3—C4—C5 | 119.1 (8) | C12—C13—C14 | 119.4 (6) |
C3—C4—H4 | 120.4314 | C12—C13—H13 | 120.2967 |
C5—C4—H4 | 120.4309 | C14—C13—H13 | 120.2963 |
C4—C5—C6 | 119.0 (9) | C13—C14—C15 | 119.2 (8) |
C4—C5—H5 | 120.5111 | C13—C14—H14 | 120.4096 |
C6—C5—H5 | 120.5112 | C15—C14—H14 | 120.4094 |
C5—C6—C7 | 121.4 (8) | C14—C15—C16 | 121.5 (8) |
C5—C6—H6 | 119.2825 | C14—C15—H15 | 119.2499 |
C7—C6—H6 | 119.2824 | C16—C15—H15 | 119.2504 |
C6—C7—C8 | 120.5 (7) | C15—C16—C17 | 120.8 (6) |
C6—C7—H7 | 119.7553 | C15—C16—H16 | 119.6195 |
C8—C7—H7 | 119.7559 | C17—C16—H16 | 119.6206 |
C3—C8—C7 | 118.1 (8) | C12—C17—C16 | 118.3 (8) |
C3—C8—C9 | 120.3 (7) | C12—C17—C18 | 118.4 (7) |
C7—C8—C9 | 121.6 (7) | C16—C17—C18 | 123.4 (6) |
N1—C9—C8 | 112.0 (7) | N2—C18—C17 | 111.8 (5) |
N1—C9—H9a | 109.4708 | N2—C18—H18a | 109.4715 |
N1—C9—H9b | 109.4706 | N2—C18—H18b | 109.4717 |
C8—C9—H9a | 109.4711 | C17—C18—H18a | 109.471 |
C8—C9—H9b | 109.4722 | C17—C18—H18b | 109.4706 |
H9a—C9—H9b | 106.8364 | H18a—C18—H18b | 107.0112 |
Cg4 is the centroid of the C12–C17 ring. |
D—H···A | D—H | H···A | D···A | D—H···A |
C11—H11a···O2i | 0.96 | 2.47 | 3.415 (10) | 168 |
C11—H11b···Cg4ii | 0.96 | 2.58 | 3.523 (10) | 169 |
Symmetry codes: (i) −x+2, y+1/2, −z+2; (ii) x, y+1, z. |
Experimental details
Crystal data | |
Chemical formula | C18H20N2O2 |
Mr | 296.4 |
Crystal system, space group | Monoclinic, P21 |
Temperature (K) | 120 |
a, b, c (Å) | 10.868 (2), 5.1693 (13), 13.327 (3) |
β (°) | 102.623 (18) |
V (Å3) | 730.6 (3) |
Z | 2 |
Radiation type | Cu Kα |
µ (mm−1) | 0.71 |
Crystal size (mm) | 0.97 × 0.10 × 0.04 |
Data collection | |
Diffractometer | Agilent Xcalibur diffractometer with an Atlas (Gemini ultra Cu) detector |
Absorption correction | Multi-scan (CrysAlis PRO; Agilent, 2010) |
Tmin, Tmax | 0.77, 1 |
No. of measured, independent and observed [I > 3σ(I)] reflections | 2799, 1341, 785 |
Rint | 0.079 |
(sin θ/λ)max (Å−1) | 0.591 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.067, 0.171, 1.38 |
No. of reflections | 1341 |
No. of parameters | 199 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.28, −0.25 |
Computer programs: CrysAlis PRO (Agilent, 2010), SIR2002 (Burla et al., 2003), JANA2006 (Petříček et al., 2006), DIAMOND (Brandenburg & Putz, 2005).
Cg4 is the centroid of the C12–C17 ring. |
D—H···A | D—H | H···A | D···A | D—H···A |
C11—H11a···O2i | 0.96 | 2.47 | 3.415 (10) | 168.40 |
C11—H11b···Cg4ii | 0.96 | 2.58 | 3.523 (10) | 169 |
Symmetry codes: (i) −x+2, y+1/2, −z+2; (ii) x, y+1, z. |
Acknowledgements
We acknowledge the Dirección de Investigaciones, Sede Bogotá (DIB) de la Universidad Nacional de Colombia, for financial support of this work, as well as the Institutional research plan No. AVOZ10100521 of the Institute of Physics and the Praemium Academiae project of the Academy of Sciences of the Czech Republic.
References
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We have recently reported the molecular structure of two 3,3'-(ethane-1,2-diyl)bis(6-substituted-3,4-dihydro-2H-1,3-benzoxazine). The substituents in position 6 were methyl and chlorine respectively (Rivera et al., 2011, 2010). Their crystal structures established the existence of an anomeric effect in N—C—O sequence in oxazine ring. In connection with our interest in anomeric effect in benzo-fused oxazine ring, we decided it was important to establish the effect of substituent at the aromatic ring in the N—C—O moiety. Thus, we obtained the title compound (I) which has no substituent in position 6.
The molecular structure of the title compound is illustrated in Fig. 1. Unlike the related structures, which crystallized in monoclinic space groups P21/n (Rivera et al., 2011) and C2/c (Rivera et al., 2010) utilizing the crystallography inversion center in the molecular symmetry, the title compound (I) crystallizes in the polar space group P21 with one molecule in the asymmetric unit. The molecules of (I) thus have no internal symmetry. The fused six-membered heterocyclic rings exists in the approximate half-chair conformations with puckering parameters Q = 0.479 (9) Å, θ = 49.2 (11)° and ϕ = 94.4 (13)° for O1/C2/N1/C9/C8/C3 and Q = 0.482 (8) Å, θ = 50.0 (10)° and ϕ = 101.1 (13)° for O2/C11/N2/C18/C17/C12 (Cremer & Pople, 1975). The C—O bond lengths [C2—O1, 1.451 (13) Å; C11—O2, 1.475 (11) Å] are longer than the values observed in related structure where the p-substituents in the aromatic rings is methyl [1.3755 (14) Å and 1.4525 (13) Å] (Rivera et al., 2011). However, in p-chlorine derivative, the C—O bond distance is significantlly longer from those in (I), [1.421 (2) Å and 1.529 (2) Å] (Rivera et al., 2010). The N1—C2 and N2—C11 bond lengths of 1.416 (9) Å and 1.431 (10) Å respectively, which are shorter than the expected bond length of 1.468 Å, provides structural evidence for the existence of an anomeric effect in both N—C—O groups.
In the crystal weak intermolecular C—H···O contacts (Table 1) that could be considered as weak hydrogen bonds (Desiraju & Steiner, 1999) link molecules into dimers (Fig. 2). Neighboring pair of these dimers are linked together via weaker C—H···π contacts into chains extended along the b axis (Figure 2).