organic compounds
(E)-2,2′-[3-(2-Nitrophenyl)prop-2-ene-1,1-diyl]bis(3-hydroxycyclohex-2-en-1-one)
aAdvanced Analysis Center, Korea Institute of Science & Technology, Hwarangro 14-gil, Seongbuk-gu, Seoul 136-791, Republic of Korea, and bCenter for Neuro-Medicine, Korea Institute of Science & Technology, Hwarangro 14-gil, Seongbuk-gu, Seoul 136-791, Republic of Korea
*Correspondence e-mail: jhcha@kist.re.kr
In the title compound, C21H21NO6, each of the cyclohexenone rings adopts a half-chair conformation. Each of the pairs of hydroxy and carbonyl O atoms are oriented to allow for the formation of intramolecular O—H⋯O hydrogen bonds, which are typical of xanthene derivatives.
Related literature
For the biological activity xanthenes and their derivatives and for related structures, see: Lee et al. (2011).
Experimental
Crystal data
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Refinement
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Data collection: RAPID-AUTO (Rigaku, 2006); cell RAPID-AUTO; data reduction: RAPID-AUTO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: CrystalStructure (Rigaku, 2010); software used to prepare material for publication: CrystalStructure.
Supporting information
10.1107/S1600536811054730/ff2047sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536811054730/ff2047Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536811054730/ff2047Isup3.cml
To solution of 1,3-cyclohexanedione (4.61 mmol), 2-nitrocinnamaldehyde (1.84 mmol) and 4Å MS was added catalytic amounts of L-proline (0.47 mmol) in under nitrogen atmosphere. After stirring for 2 h, The anhydrous ethyl acetate (0.5 ml) was added to a reaction mixture and the solution was stirred for 12 h. The reaction mixture was filtered through pad of celite to remove MS and concentrated. The residue oil was purified by flash
to afford product which was recrystallized from ethanol to give yellow crystals suitable for X-ray analysis.All hydrogen atoms were positioned geometrically and refined using a riding model with C—H = 0.91–0.98 Å and Uiso(H) = 1.2 Ueq(C,O). A rotating model was used for OH groups.
Data collection: RAPID-AUTO (Rigaku, 2006); cell
RAPID-AUTO (Rigaku, 2006); data reduction: RAPID-AUTO (Rigaku, 2006); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: CrystalStructure (Rigaku, 2010); software used to prepare material for publication: CrystalStructure (Rigaku, 2010).Fig. 1. The molecular structure of (I) showing the atomic numbering and 50% probability displacement ellipsoid. |
C21H21NO6 | F(000) = 808.00 |
Mr = 383.40 | Dx = 1.376 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71075 Å |
Hall symbol: -P 2yn | Cell parameters from 11386 reflections |
a = 8.0785 (7) Å | θ = 3.1–27.5° |
b = 8.7261 (6) Å | µ = 0.10 mm−1 |
c = 26.2616 (17) Å | T = 296 K |
β = 90.829 (3)° | Block, colourless |
V = 1851.1 (3) Å3 | 0.30 × 0.20 × 0.10 mm |
Z = 4 |
Rigaku R-AXIS RAPID diffractometer | 2335 reflections with F2 > 2σ(F2) |
Detector resolution: 10.000 pixels mm-1 | Rint = 0.028 |
ω scans | θmax = 25.4° |
Absorption correction: multi-scan (ABSCOR; Rigaku, 1995) | h = −9→9 |
Tmin = 0.739, Tmax = 0.990 | k = −10→9 |
14705 measured reflections | l = −31→31 |
3387 independent reflections |
Refinement on F2 | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.045 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.156 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.14 | w = 1/[σ2(Fo2) + (0.0927P)2] where P = (Fo2 + 2Fc2)/3 |
3387 reflections | (Δ/σ)max = 0.026 |
263 parameters | Δρmax = 0.31 e Å−3 |
0 restraints | Δρmin = −0.24 e Å−3 |
Primary atom site location: structure-invariant direct methods |
C21H21NO6 | V = 1851.1 (3) Å3 |
Mr = 383.40 | Z = 4 |
Monoclinic, P21/n | Mo Kα radiation |
a = 8.0785 (7) Å | µ = 0.10 mm−1 |
b = 8.7261 (6) Å | T = 296 K |
c = 26.2616 (17) Å | 0.30 × 0.20 × 0.10 mm |
β = 90.829 (3)° |
Rigaku R-AXIS RAPID diffractometer | 3387 independent reflections |
Absorption correction: multi-scan (ABSCOR; Rigaku, 1995) | 2335 reflections with F2 > 2σ(F2) |
Tmin = 0.739, Tmax = 0.990 | Rint = 0.028 |
14705 measured reflections |
R[F2 > 2σ(F2)] = 0.045 | 0 restraints |
wR(F2) = 0.156 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.14 | Δρmax = 0.31 e Å−3 |
3387 reflections | Δρmin = −0.24 e Å−3 |
263 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement was performed using all reflections. The weighted R-factor (wR) and goodness of fit (S) are based on F2. R-factor (gt) are based on F. The threshold expression of F2 > 2.0 σ(F2) is used only for calculating R-factor (gt). |
x | y | z | Uiso*/Ueq | ||
O1 | 0.45785 (19) | 0.22041 (16) | 0.07963 (5) | 0.0513 (4) | |
O2 | 0.3744 (3) | 0.49657 (15) | 0.22975 (5) | 0.0564 (5) | |
O3 | 0.4192 (2) | 0.24905 (17) | 0.28520 (5) | 0.0529 (5) | |
O4 | 0.5653 (3) | −0.00381 (17) | 0.13489 (6) | 0.0624 (5) | |
O5 | −0.1568 (3) | 0.3544 (2) | 0.09158 (9) | 0.0951 (8) | |
O6 | −0.1984 (3) | 0.3325 (3) | 0.01141 (8) | 0.0992 (8) | |
N28 | −0.1634 (3) | 0.2779 (3) | 0.05255 (8) | 0.0639 (6) | |
C7 | 0.4594 (3) | 0.1130 (2) | 0.20880 (7) | 0.0379 (5) | |
C8 | 0.5667 (3) | 0.0171 (2) | 0.18386 (8) | 0.0453 (5) | |
C9 | 0.6980 (3) | −0.0716 (3) | 0.21168 (10) | 0.0634 (7) | |
C10 | 0.6446 (4) | −0.1116 (3) | 0.26478 (10) | 0.0688 (8) | |
C11 | 0.5914 (4) | 0.0305 (3) | 0.29310 (9) | 0.0646 (8) | |
C12 | 0.4847 (3) | 0.1371 (3) | 0.26209 (8) | 0.0446 (5) | |
C13 | 0.3883 (3) | 0.4839 (3) | 0.18035 (8) | 0.0425 (5) | |
C14 | 0.4224 (4) | 0.6324 (3) | 0.15382 (8) | 0.0550 (6) | |
C15 | 0.3716 (4) | 0.6286 (3) | 0.09916 (9) | 0.0633 (7) | |
C16 | 0.4457 (4) | 0.4907 (3) | 0.07317 (9) | 0.0582 (7) | |
C17 | 0.4256 (3) | 0.3441 (3) | 0.10290 (8) | 0.0430 (5) | |
C18 | 0.3761 (3) | 0.3469 (2) | 0.15437 (7) | 0.0361 (5) | |
C19 | 0.3217 (3) | 0.2019 (2) | 0.18202 (7) | 0.0356 (5) | |
C20 | 0.2077 (3) | 0.0996 (3) | 0.15054 (8) | 0.0429 (5) | |
C21 | 0.0903 (3) | 0.1434 (3) | 0.12109 (10) | 0.0617 (7) | |
C22 | −0.0262 (3) | 0.0497 (3) | 0.09109 (7) | 0.0446 (5) | |
C23 | −0.0204 (3) | −0.1105 (3) | 0.09304 (8) | 0.0524 (6) | |
C24 | −0.1205 (4) | −0.2002 (3) | 0.06219 (9) | 0.0623 (7) | |
C25 | −0.2285 (4) | −0.1343 (3) | 0.02791 (9) | 0.0644 (7) | |
C26 | −0.2383 (3) | 0.0213 (3) | 0.02454 (8) | 0.0585 (7) | |
C27 | −0.1403 (3) | 0.1105 (3) | 0.05629 (7) | 0.0460 (5) | |
H2 | 0.3781 | 0.4112 | 0.2428 | 0.0677* | |
H4 | 0.5166 | 0.0675 | 0.1209 | 0.0748* | |
H9A | 0.7988 | −0.0112 | 0.2135 | 0.0760* | |
H9B | 0.7217 | −0.1649 | 0.1931 | 0.0760* | |
H10A | 0.5532 | −0.1837 | 0.2630 | 0.0825* | |
H10B | 0.7356 | −0.1603 | 0.2831 | 0.0825* | |
H11A | 0.5312 | −0.0003 | 0.3231 | 0.0775* | |
H11B | 0.6895 | 0.0856 | 0.3045 | 0.0775* | |
H14A | 0.3632 | 0.7142 | 0.1708 | 0.0660* | |
H14B | 0.5398 | 0.6548 | 0.1564 | 0.0660* | |
H15A | 0.4083 | 0.7215 | 0.0825 | 0.0759* | |
H15B | 0.2518 | 0.6241 | 0.0964 | 0.0759* | |
H16A | 0.3936 | 0.4785 | 0.0399 | 0.0699* | |
H16B | 0.5627 | 0.5091 | 0.0680 | 0.0699* | |
H19 | 0.2523 | 0.2392 | 0.2097 | 0.0427* | |
H20 | 0.221 (6) | −0.001 (4) | 0.1592 (14) | 0.134 (14)* | |
H21 | 0.083 (5) | 0.251 (5) | 0.1152 (14) | 0.134 (14)* | |
H23 | 0.0529 | −0.1577 | 0.1157 | 0.0629* | |
H24 | −0.1145 | −0.3064 | 0.0647 | 0.0747* | |
H25 | −0.2949 | −0.1956 | 0.0070 | 0.0773* | |
H26 | −0.3102 | 0.0670 | 0.0011 | 0.0701* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0567 (10) | 0.0544 (9) | 0.0427 (8) | 0.0037 (7) | 0.0023 (7) | −0.0073 (7) |
O2 | 0.0823 (13) | 0.0447 (8) | 0.0421 (8) | 0.0114 (8) | −0.0029 (8) | −0.0048 (7) |
O3 | 0.0658 (11) | 0.0523 (9) | 0.0403 (8) | 0.0022 (8) | −0.0093 (7) | −0.0046 (7) |
O4 | 0.0779 (13) | 0.0533 (10) | 0.0561 (10) | 0.0166 (8) | 0.0095 (9) | −0.0027 (8) |
O5 | 0.1043 (18) | 0.0674 (12) | 0.1119 (17) | 0.0224 (11) | −0.0542 (14) | −0.0214 (12) |
O6 | 0.1102 (18) | 0.1062 (16) | 0.0808 (13) | 0.0340 (14) | −0.0112 (13) | 0.0364 (12) |
N28 | 0.0511 (13) | 0.0701 (13) | 0.0699 (13) | 0.0104 (10) | −0.0181 (10) | 0.0060 (11) |
C7 | 0.0336 (11) | 0.0372 (10) | 0.0425 (11) | −0.0030 (8) | −0.0069 (9) | 0.0000 (8) |
C8 | 0.0402 (12) | 0.0375 (10) | 0.0581 (13) | −0.0008 (9) | −0.0023 (10) | 0.0005 (10) |
C9 | 0.0483 (15) | 0.0515 (13) | 0.0900 (18) | 0.0082 (11) | −0.0104 (13) | 0.0025 (13) |
C10 | 0.0639 (18) | 0.0549 (14) | 0.0867 (18) | 0.0059 (12) | −0.0259 (14) | 0.0135 (13) |
C11 | 0.0783 (19) | 0.0516 (13) | 0.0629 (15) | −0.0011 (12) | −0.0363 (14) | 0.0062 (11) |
C12 | 0.0450 (13) | 0.0394 (11) | 0.0490 (12) | −0.0074 (9) | −0.0129 (10) | 0.0012 (9) |
C13 | 0.0407 (12) | 0.0432 (11) | 0.0435 (11) | 0.0072 (9) | −0.0064 (9) | −0.0015 (9) |
C14 | 0.0628 (16) | 0.0409 (11) | 0.0612 (14) | 0.0018 (10) | −0.0029 (12) | 0.0036 (10) |
C15 | 0.0778 (19) | 0.0517 (13) | 0.0602 (14) | 0.0097 (12) | −0.0019 (13) | 0.0142 (11) |
C16 | 0.0691 (17) | 0.0585 (14) | 0.0473 (12) | 0.0079 (12) | 0.0064 (11) | 0.0138 (11) |
C17 | 0.0387 (12) | 0.0479 (11) | 0.0422 (11) | 0.0014 (9) | −0.0057 (9) | 0.0026 (9) |
C18 | 0.0312 (11) | 0.0406 (10) | 0.0365 (10) | 0.0015 (8) | −0.0053 (8) | 0.0014 (8) |
C19 | 0.0315 (11) | 0.0392 (10) | 0.0360 (9) | 0.0003 (8) | −0.0034 (8) | −0.0012 (8) |
C20 | 0.0363 (12) | 0.0446 (11) | 0.0474 (11) | −0.0035 (9) | −0.0084 (9) | 0.0029 (10) |
C21 | 0.0515 (16) | 0.0474 (13) | 0.0852 (18) | 0.0090 (11) | −0.0331 (13) | −0.0134 (12) |
C22 | 0.0351 (12) | 0.0516 (12) | 0.0468 (11) | 0.0007 (9) | −0.0072 (9) | −0.0051 (10) |
C23 | 0.0493 (14) | 0.0511 (12) | 0.0564 (13) | 0.0025 (10) | −0.0149 (11) | −0.0054 (10) |
C24 | 0.0629 (17) | 0.0584 (14) | 0.0655 (15) | −0.0078 (12) | −0.0021 (12) | −0.0161 (12) |
C25 | 0.0573 (17) | 0.0815 (18) | 0.0543 (14) | −0.0151 (13) | −0.0092 (12) | −0.0254 (13) |
C26 | 0.0436 (14) | 0.0909 (18) | 0.0406 (12) | −0.0009 (12) | −0.0105 (10) | −0.0045 (12) |
C27 | 0.0378 (12) | 0.0574 (13) | 0.0424 (11) | 0.0030 (9) | −0.0059 (9) | −0.0007 (10) |
O1—C17 | 1.269 (3) | C23—C24 | 1.380 (4) |
O2—C13 | 1.308 (3) | C24—C25 | 1.371 (4) |
O3—C12 | 1.270 (3) | C25—C26 | 1.363 (4) |
O4—C8 | 1.299 (3) | C26—C27 | 1.381 (4) |
O5—N28 | 1.224 (3) | O2—H2 | 0.820 |
O6—N28 | 1.210 (3) | O4—H4 | 0.820 |
N28—C27 | 1.476 (3) | C9—H9A | 0.970 |
C7—C8 | 1.377 (3) | C9—H9B | 0.970 |
C7—C12 | 1.427 (3) | C10—H10A | 0.970 |
C7—C19 | 1.520 (3) | C10—H10B | 0.970 |
C8—C9 | 1.495 (4) | C11—H11A | 0.970 |
C9—C10 | 1.507 (4) | C11—H11B | 0.970 |
C10—C11 | 1.512 (4) | C14—H14A | 0.970 |
C11—C12 | 1.500 (4) | C14—H14B | 0.970 |
C13—C14 | 1.499 (3) | C15—H15A | 0.970 |
C13—C18 | 1.379 (3) | C15—H15B | 0.970 |
C14—C15 | 1.488 (4) | C16—H16A | 0.970 |
C15—C16 | 1.511 (4) | C16—H16B | 0.970 |
C16—C17 | 1.509 (3) | C19—H19 | 0.980 |
C17—C18 | 1.415 (3) | C20—H20 | 0.91 (4) |
C18—C19 | 1.527 (3) | C21—H21 | 0.96 (4) |
C19—C20 | 1.519 (3) | C23—H23 | 0.930 |
C20—C21 | 1.273 (4) | C24—H24 | 0.930 |
C21—C22 | 1.468 (4) | C25—H25 | 0.930 |
C22—C23 | 1.400 (3) | C26—H26 | 0.930 |
C22—C27 | 1.393 (3) | ||
O1···O4 | 2.579 (2) | O2···H20iii | 3.03 (4) |
O1···C7 | 3.519 (3) | O3···H9Av | 3.0932 |
O1···C8 | 3.368 (3) | O3···H9Bv | 3.0427 |
O1···C13 | 3.555 (3) | O3···H10Bv | 3.4297 |
O1···C19 | 2.924 (3) | O3···H14Aiv | 2.5908 |
O1···C20 | 2.962 (3) | O3···H15Biv | 3.5910 |
O1···C21 | 3.247 (3) | O3···H20iii | 2.87 (4) |
O2···O3 | 2.627 (2) | O3···H23iii | 2.7324 |
O2···C7 | 3.462 (3) | O4···H14Avi | 3.1070 |
O2···C12 | 3.367 (3) | O4···H14Bvi | 3.0395 |
O2···C19 | 2.889 (3) | O4···H15Avi | 3.0330 |
O3···C8 | 3.563 (3) | O5···H10Biii | 3.3645 |
O3···C13 | 3.439 (3) | O5···H11Aiii | 2.7557 |
O3···C18 | 3.553 (3) | O5···H11Biii | 3.4070 |
O3···C19 | 2.841 (3) | O5···H16Bvii | 2.7012 |
O4···C10 | 3.587 (3) | O5···H24x | 3.0638 |
O4···C17 | 3.342 (3) | O6···H15Aviii | 3.0095 |
O4···C18 | 3.462 (3) | O6···H15Bviii | 2.8817 |
O4···C19 | 2.949 (3) | O6···H16Aviii | 2.6382 |
O4···C20 | 3.060 (3) | O6···H16Bvii | 2.8973 |
O5···C21 | 2.816 (4) | O6···H24x | 3.5097 |
O5···C22 | 2.860 (3) | O6···H24ii | 3.2529 |
O5···C26 | 3.456 (4) | N28···H16Bvii | 3.0259 |
O6···C22 | 3.510 (3) | C7···H2iv | 3.5002 |
O6···C26 | 2.757 (4) | C7···H10Bv | 3.1650 |
N28···C21 | 2.952 (4) | C8···H10Bv | 3.3457 |
C7···C10 | 2.860 (4) | C8···H14Avi | 3.1288 |
C7···C13 | 3.369 (3) | C8···H14Bvi | 3.2486 |
C7···C17 | 3.443 (3) | C9···H11Bix | 3.1575 |
C8···C11 | 2.875 (4) | C9···H14Avi | 3.4471 |
C8···C18 | 3.349 (3) | C9···H14Bvi | 3.0638 |
C8···C20 | 3.102 (3) | C10···H9Aix | 3.5614 |
C9···C12 | 2.847 (4) | C10···H11Bix | 3.4871 |
C12···C18 | 3.472 (3) | C10···H14Bvi | 3.5913 |
C13···C16 | 2.860 (4) | C10···H19iv | 3.5334 |
C14···C17 | 2.849 (3) | C11···H9Bv | 3.0754 |
C15···C18 | 2.854 (3) | C11···H14Bix | 3.4199 |
C17···C20 | 3.047 (3) | C12···H2iv | 3.5325 |
C17···C21 | 3.266 (4) | C12···H9Av | 3.5861 |
C18···C21 | 3.032 (3) | C12···H9Bv | 3.1492 |
C20···C23 | 2.992 (3) | C12···H10Bv | 3.1173 |
C22···C25 | 2.815 (4) | C12···H14Aiv | 3.4067 |
C23···C26 | 2.751 (4) | C13···H10Bv | 3.4141 |
C24···C27 | 2.720 (4) | C13···H11Aiii | 3.3914 |
O1···O5i | 3.335 (3) | C13···H11Bv | 3.5415 |
O1···O6i | 3.467 (3) | C14···H9Bx | 3.1573 |
O1···N28i | 3.191 (3) | C14···H10Ax | 3.4394 |
O1···C25ii | 3.438 (3) | C14···H11Bv | 3.3315 |
O1···C26i | 3.353 (3) | C14···H20x | 3.60 (4) |
O1···C27i | 3.449 (3) | C15···H23x | 3.2135 |
O2···O3iii | 3.256 (3) | C16···H16Axi | 3.2693 |
O2···C7iii | 3.321 (3) | C16···H25ii | 3.5326 |
O2···C12iii | 3.159 (3) | C17···H25ii | 3.3230 |
O2···C19iii | 3.346 (3) | C18···H10Bv | 3.5206 |
O2···C20iii | 3.345 (3) | C19···H10Aiii | 3.5190 |
O3···O2iv | 3.256 (3) | C20···H2iv | 3.3300 |
O3···C9v | 3.466 (3) | C21···H11Aiii | 3.5807 |
O3···C13iv | 3.522 (3) | C22···H9Avii | 3.5700 |
O3···C14iv | 3.368 (3) | C23···H9Bvii | 3.4100 |
O3···C23iii | 3.510 (3) | C23···H15Bvi | 3.1937 |
O4···C14vi | 3.417 (3) | C24···H15Bvi | 3.4815 |
O4···C22i | 3.541 (3) | C25···H15Axii | 3.5163 |
O4···C25i | 3.478 (3) | C26···H4vii | 3.2613 |
O4···C26i | 3.331 (3) | C27···H4vii | 3.2928 |
O4···C27i | 3.325 (3) | H2···C7iii | 3.5002 |
O5···O1vii | 3.335 (3) | H2···C12iii | 3.5325 |
O5···C11iii | 3.430 (4) | H2···C20iii | 3.3300 |
O5···C16vii | 3.452 (4) | H2···H9Av | 2.9166 |
O5···C17vii | 3.392 (4) | H2···H10Aiii | 3.5826 |
O6···O1vii | 3.467 (3) | H2···H10Bv | 3.2636 |
O6···C15viii | 3.223 (4) | H2···H14Aiv | 3.4703 |
O6···C16vii | 3.597 (4) | H2···H19iii | 3.3010 |
O6···C16viii | 3.343 (4) | H2···H20iii | 2.8135 |
O6···C24ii | 3.442 (4) | H4···C26i | 3.2613 |
N28···O1vii | 3.191 (3) | H4···C27i | 3.2928 |
C7···O2iv | 3.321 (3) | H4···H14Avi | 3.5776 |
C9···O3ix | 3.466 (3) | H4···H15Avi | 3.2979 |
C11···O5iv | 3.430 (4) | H4···H26i | 3.4624 |
C12···O2iv | 3.159 (3) | H9A···O2ix | 3.0144 |
C13···O3iii | 3.522 (3) | H9A···O3ix | 3.0932 |
C14···O3iii | 3.368 (3) | H9A···C10v | 3.5614 |
C14···O4x | 3.417 (3) | H9A···C12ix | 3.5861 |
C15···O6viii | 3.223 (4) | H9A···C22i | 3.5700 |
C16···O5i | 3.452 (4) | H9A···H2ix | 2.9166 |
C16···O6i | 3.597 (4) | H9A···H10Av | 3.1552 |
C16···O6viii | 3.343 (4) | H9A···H10Bv | 3.0761 |
C17···O5i | 3.392 (4) | H9A···H11Bix | 3.5519 |
C19···O2iv | 3.346 (3) | H9A···H23i | 3.5489 |
C20···O2iv | 3.345 (3) | H9B···O3ix | 3.0427 |
C22···O4vii | 3.541 (3) | H9B···C11ix | 3.0754 |
C23···O3iv | 3.510 (3) | H9B···C12ix | 3.1492 |
C24···O6ii | 3.442 (4) | H9B···C14vi | 3.1573 |
C25···O1ii | 3.438 (3) | H9B···C23i | 3.4100 |
C25···O4vii | 3.478 (3) | H9B···H11Aix | 3.5713 |
C26···O1vii | 3.353 (3) | H9B···H11Bix | 2.2934 |
C26···O4vii | 3.331 (3) | H9B···H14Avi | 3.1297 |
C27···O1vii | 3.449 (3) | H9B···H14Bvi | 2.3497 |
C27···O4vii | 3.325 (3) | H9B···H23i | 3.3834 |
O1···H4 | 1.7797 | H10A···O2vi | 3.2557 |
O1···H16A | 2.5328 | H10A···C14vi | 3.4394 |
O1···H16B | 2.6764 | H10A···C19iv | 3.5190 |
O1···H20 | 3.45 (4) | H10A···H2iv | 3.5826 |
O1···H21 | 3.20 (4) | H10A···H9Aix | 3.1552 |
O2···H14A | 2.4515 | H10A···H11Bix | 3.4095 |
O2···H14B | 2.7342 | H10A···H14Avi | 2.9857 |
O2···H19 | 2.5059 | H10A···H14Bvi | 3.1345 |
O3···H2 | 1.8284 | H10A···H19iv | 2.6664 |
O3···H11A | 2.5527 | H10A···H21iv | 3.4421 |
O3···H11B | 2.6512 | H10B···O2ix | 3.4565 |
O3···H19 | 2.3833 | H10B···O3ix | 3.4297 |
O4···H9A | 2.7765 | H10B···O5iv | 3.3645 |
O4···H9B | 2.4191 | H10B···C7ix | 3.1650 |
O4···H20 | 2.86 (5) | H10B···C8ix | 3.3457 |
O5···H21 | 2.21 (4) | H10B···C12ix | 3.1173 |
O6···H21 | 3.59 (4) | H10B···C13ix | 3.4141 |
O6···H26 | 2.4996 | H10B···C18ix | 3.5206 |
N28···H21 | 2.57 (4) | H10B···H2ix | 3.2636 |
N28···H26 | 2.5635 | H10B···H9Aix | 3.0761 |
C7···H2 | 2.8310 | H10B···H11Bix | 3.2578 |
C7···H4 | 2.3932 | H11A···O2iv | 3.5398 |
C7···H9A | 2.9491 | H11A···O5iv | 2.7557 |
C7···H9B | 3.2507 | H11A···C13iv | 3.3914 |
C7···H10A | 3.0455 | H11A···C21iv | 3.5807 |
C7···H11A | 3.2052 | H11A···H9Bv | 3.5713 |
C7···H11B | 3.1136 | H11A···H15Biv | 3.3195 |
C7···H20 | 2.51 (4) | H11A···H19iv | 3.3316 |
C8···H10A | 2.7220 | H11A···H21iv | 2.8645 |
C8···H10B | 3.3077 | H11A···H23iii | 3.4653 |
C8···H11B | 3.3598 | H11A···H24iii | 3.4561 |
C8···H19 | 3.2735 | H11B···O5iv | 3.4070 |
C8···H20 | 2.86 (5) | H11B···C9v | 3.1575 |
C9···H4 | 3.0330 | H11B···C10v | 3.4871 |
C9···H11A | 3.2983 | H11B···C13ix | 3.5415 |
C9···H11B | 2.7984 | H11B···C14ix | 3.3315 |
C11···H9A | 2.7222 | H11B···H9Av | 3.5519 |
C11···H9B | 3.3157 | H11B···H9Bv | 2.2934 |
C12···H2 | 2.5899 | H11B···H10Av | 3.4095 |
C12···H9A | 3.1361 | H11B···H10Bv | 3.2578 |
C12···H10A | 2.8535 | H11B···H14Bix | 2.4774 |
C12···H10B | 3.3335 | H14A···O3iii | 2.5908 |
C12···H19 | 2.4772 | H14A···O4x | 3.1070 |
C13···H15A | 3.3079 | H14A···C8x | 3.1288 |
C13···H15B | 2.7399 | H14A···C9x | 3.4471 |
C13···H16B | 3.2943 | H14A···C12iii | 3.4067 |
C13···H19 | 2.5268 | H14A···H2iii | 3.4703 |
C14···H2 | 3.0552 | H14A···H4x | 3.5776 |
C14···H16A | 3.2842 | H14A···H9Bx | 3.1297 |
C14···H16B | 2.7552 | H14A···H10Ax | 2.9857 |
C16···H14A | 3.2958 | H14A···H19iii | 3.2957 |
C16···H14B | 2.7130 | H14A···H20x | 2.7563 |
C17···H4 | 2.5654 | H14A···H23x | 3.0853 |
C17···H14B | 3.1843 | H14B···O4x | 3.0395 |
C17···H15A | 3.3387 | H14B···C8x | 3.2486 |
C17···H15B | 2.8219 | H14B···C9x | 3.0638 |
C17···H19 | 3.2829 | H14B···C10x | 3.5913 |
C17···H21 | 2.91 (4) | H14B···C11v | 3.4199 |
C18···H2 | 2.3882 | H14B···H9Bx | 2.3497 |
C18···H4 | 2.8343 | H14B···H10Ax | 3.1345 |
C18···H14A | 3.2352 | H14B···H11Bv | 2.4774 |
C18···H14B | 2.9946 | H15A···O4x | 3.0330 |
C18···H15B | 3.0226 | H15A···O6viii | 3.0095 |
C18···H16A | 3.2228 | H15A···C25xiii | 3.5163 |
C18···H16B | 3.0842 | H15A···H4x | 3.2979 |
C18···H20 | 3.28 (4) | H15A···H20x | 3.5105 |
C18···H21 | 2.70 (4) | H15A···H23x | 3.1925 |
C19···H2 | 2.4632 | H15A···H25xiii | 3.2146 |
C19···H4 | 2.5495 | H15A···H26viii | 2.9669 |
C19···H21 | 2.63 (4) | H15B···O3iii | 3.5910 |
C20···H4 | 2.6397 | H15B···O6viii | 2.8817 |
C20···H23 | 2.7218 | H15B···C23x | 3.1937 |
C21···H4 | 3.5068 | H15B···C24x | 3.4815 |
C21···H19 | 2.7814 | H15B···H11Aiii | 3.3195 |
C21···H23 | 2.6486 | H15B···H23x | 2.5472 |
C22···H20 | 2.70 (4) | H15B···H24x | 3.1222 |
C22···H24 | 3.2604 | H16A···O6viii | 2.6382 |
C22···H26 | 3.2731 | H16A···C16xi | 3.2693 |
C23···H20 | 2.76 (4) | H16A···H16Axi | 2.7561 |
C23···H21 | 3.32 (4) | H16A···H16Bxi | 2.8642 |
C23···H25 | 3.2288 | H16A···H25ii | 2.8676 |
C24···H26 | 3.2078 | H16B···O5i | 2.7012 |
C25···H23 | 3.2212 | H16B···O6i | 2.8973 |
C26···H24 | 3.2027 | H16B···N28i | 3.0259 |
C27···H21 | 2.66 (4) | H16B···H16Axi | 2.8642 |
C27···H23 | 3.2058 | H16B···H24xiii | 3.0668 |
C27···H25 | 3.2123 | H16B···H25xiii | 3.2534 |
H2···H14A | 3.2518 | H19···O2iv | 2.8468 |
H2···H14B | 3.3843 | H19···C10iii | 3.5334 |
H2···H19 | 2.0038 | H19···H2iv | 3.3010 |
H4···H9A | 3.3788 | H19···H10Aiii | 2.6664 |
H4···H9B | 3.2183 | H19···H11Aiii | 3.3316 |
H4···H19 | 3.5186 | H19···H14Aiv | 3.2957 |
H4···H20 | 2.6720 | H20···O2iv | 3.03 (4) |
H9A···H10A | 2.8225 | H20···O3iv | 2.87 (4) |
H9A···H10B | 2.3061 | H20···C14vi | 3.60 (4) |
H9A···H11B | 2.6954 | H20···H2iv | 2.8135 |
H9B···H10A | 2.3074 | H20···H14Avi | 2.7563 |
H9B···H10B | 2.3641 | H20···H15Avi | 3.5105 |
H10A···H11A | 2.2564 | H21···H10Aiii | 3.4421 |
H10A···H11B | 2.8078 | H21···H11Aiii | 2.8645 |
H10B···H11A | 2.4148 | H23···O3iv | 2.7324 |
H10B···H11B | 2.2502 | H23···C15vi | 3.2135 |
H14A···H15A | 2.3527 | H23···H9Avii | 3.5489 |
H14A···H15B | 2.2789 | H23···H9Bvii | 3.3834 |
H14B···H15A | 2.2751 | H23···H11Aiv | 3.4653 |
H14B···H15B | 2.8045 | H23···H14Avi | 3.0853 |
H14B···H16B | 2.6552 | H23···H15Avi | 3.1925 |
H15A···H16A | 2.3988 | H23···H15Bvi | 2.5472 |
H15A···H16B | 2.2686 | H24···O5vi | 3.0638 |
H15B···H16A | 2.2743 | H24···O6vi | 3.5097 |
H15B···H16B | 2.8148 | H24···O6ii | 3.2529 |
H15B···H21 | 3.5649 | H24···H11Aiv | 3.4561 |
H19···H20 | 2.4879 | H24···H15Bvi | 3.1222 |
H19···H21 | 2.8185 | H24···H16Bxii | 3.0668 |
H20···H21 | 2.72 (6) | H25···O1ii | 2.6218 |
H20···H23 | 2.2321 | H25···C16ii | 3.5326 |
H21···H23 | 3.5786 | H25···C17ii | 3.3230 |
H23···H24 | 2.2928 | H25···H15Axii | 3.2146 |
H24···H25 | 2.2988 | H25···H16Aii | 2.8676 |
H25···H26 | 2.3001 | H25···H16Bxii | 3.2534 |
O1···H25ii | 2.6218 | H25···H26xiv | 3.3855 |
O1···H26i | 3.1092 | H26···O1vii | 3.1092 |
O1···H26ii | 3.4836 | H26···O1ii | 3.4836 |
O2···H9Av | 3.0144 | H26···H4vii | 3.4624 |
O2···H10Ax | 3.2557 | H26···H15Aviii | 2.9669 |
O2···H10Bv | 3.4565 | H26···H25xiv | 3.3855 |
O2···H11Aiii | 3.5398 | H26···H26xiv | 3.2819 |
O2···H19iii | 2.8468 | ||
O5—N28—O6 | 122.7 (3) | C8—C9—H9B | 109.396 |
O5—N28—C27 | 118.7 (2) | C10—C9—H9A | 109.398 |
O6—N28—C27 | 118.5 (2) | C10—C9—H9B | 109.398 |
C8—C7—C12 | 118.27 (18) | H9A—C9—H9B | 108.010 |
C8—C7—C19 | 123.45 (17) | C9—C10—H10A | 109.530 |
C12—C7—C19 | 118.18 (17) | C9—C10—H10B | 109.527 |
O4—C8—C7 | 124.04 (19) | C11—C10—H10A | 109.524 |
O4—C8—C9 | 114.01 (19) | C11—C10—H10B | 109.522 |
C7—C8—C9 | 121.9 (2) | H10A—C10—H10B | 108.089 |
C8—C9—C10 | 111.2 (2) | C10—C11—H11A | 108.754 |
C9—C10—C11 | 110.6 (2) | C10—C11—H11B | 108.754 |
C10—C11—C12 | 114.0 (2) | C12—C11—H11A | 108.752 |
O3—C12—C7 | 121.82 (18) | C12—C11—H11B | 108.748 |
O3—C12—C11 | 117.23 (19) | H11A—C11—H11B | 107.664 |
C7—C12—C11 | 120.94 (18) | C13—C14—H14A | 109.140 |
O2—C13—C14 | 114.00 (17) | C13—C14—H14B | 109.137 |
O2—C13—C18 | 123.87 (18) | C15—C14—H14A | 109.150 |
C14—C13—C18 | 122.12 (19) | C15—C14—H14B | 109.159 |
C13—C14—C15 | 112.29 (19) | H14A—C14—H14B | 107.867 |
C14—C15—C16 | 110.4 (2) | C14—C15—H15A | 109.576 |
C15—C16—C17 | 113.3 (2) | C14—C15—H15B | 109.565 |
O1—C17—C16 | 116.59 (19) | C16—C15—H15A | 109.587 |
O1—C17—C18 | 122.50 (18) | C16—C15—H15B | 109.585 |
C16—C17—C18 | 120.91 (18) | H15A—C15—H15B | 108.120 |
C13—C18—C17 | 117.93 (18) | C15—C16—H16A | 108.917 |
C13—C18—C19 | 120.13 (17) | C15—C16—H16B | 108.926 |
C17—C18—C19 | 121.81 (16) | C17—C16—H16A | 108.930 |
C7—C19—C18 | 115.44 (16) | C17—C16—H16B | 108.927 |
C7—C19—C20 | 112.70 (15) | H16A—C16—H16B | 107.735 |
C18—C19—C20 | 113.87 (16) | C7—C19—H19 | 104.427 |
C19—C20—C21 | 126.5 (2) | C18—C19—H19 | 104.434 |
C20—C21—C22 | 128.7 (2) | C20—C19—H19 | 104.428 |
C21—C22—C23 | 121.05 (19) | C19—C20—H20 | 111 (3) |
C21—C22—C27 | 123.57 (19) | C21—C20—H20 | 122 (3) |
C23—C22—C27 | 115.21 (19) | C20—C21—H21 | 116 (3) |
C22—C23—C24 | 121.7 (2) | C22—C21—H21 | 115 (3) |
C23—C24—C25 | 120.6 (3) | C22—C23—H23 | 119.134 |
C24—C25—C26 | 119.7 (3) | C24—C23—H23 | 119.136 |
C25—C26—C27 | 119.3 (3) | C23—C24—H24 | 119.669 |
N28—C27—C22 | 120.16 (19) | C25—C24—H24 | 119.681 |
N28—C27—C26 | 116.5 (2) | C24—C25—H25 | 120.135 |
C22—C27—C26 | 123.3 (2) | C26—C25—H25 | 120.133 |
C13—O2—H2 | 109.476 | C25—C26—H26 | 120.338 |
C8—O4—H4 | 109.473 | C27—C26—H26 | 120.342 |
C8—C9—H9A | 109.394 | ||
O5—N28—C27—C22 | −37.3 (3) | C13—C14—C15—C16 | −52.0 (3) |
O5—N28—C27—C26 | 141.7 (2) | C14—C15—C16—C17 | 47.0 (3) |
O6—N28—C27—C22 | 147.3 (2) | C15—C16—C17—O1 | 167.85 (19) |
O6—N28—C27—C26 | −33.7 (3) | C15—C16—C17—C18 | −13.3 (3) |
C8—C7—C12—O3 | 162.73 (18) | O1—C17—C18—C13 | 162.33 (17) |
C8—C7—C12—C11 | −16.9 (3) | O1—C17—C18—C19 | −13.6 (3) |
C12—C7—C8—O4 | −173.91 (17) | C16—C17—C18—C13 | −16.5 (3) |
C12—C7—C8—C9 | 5.3 (3) | C16—C17—C18—C19 | 167.59 (18) |
C8—C7—C19—C18 | −78.8 (3) | C13—C18—C19—C7 | −86.4 (2) |
C8—C7—C19—C20 | 54.4 (3) | C13—C18—C19—C20 | 140.88 (17) |
C19—C7—C8—O4 | 2.3 (3) | C17—C18—C19—C7 | 89.4 (2) |
C19—C7—C8—C9 | −178.46 (15) | C17—C18—C19—C20 | −43.3 (3) |
C12—C7—C19—C18 | 97.47 (19) | C7—C19—C20—C21 | −174.18 (18) |
C12—C7—C19—C20 | −129.31 (17) | C18—C19—C20—C21 | −40.2 (3) |
C19—C7—C12—O3 | −13.7 (3) | C19—C20—C21—C22 | −178.03 (19) |
C19—C7—C12—C11 | 166.64 (15) | C20—C21—C22—C23 | 1.3 (4) |
O4—C8—C9—C10 | −150.09 (17) | C20—C21—C22—C27 | −173.7 (3) |
C7—C8—C9—C10 | 30.6 (3) | C21—C22—C23—C24 | −174.94 (19) |
C8—C9—C10—C11 | −53.8 (3) | C21—C22—C27—N28 | −7.7 (3) |
C9—C10—C11—C12 | 43.6 (3) | C21—C22—C27—C26 | 173.38 (18) |
C10—C11—C12—O3 | 171.66 (19) | C23—C22—C27—N28 | 177.06 (17) |
C10—C11—C12—C7 | −8.7 (3) | C23—C22—C27—C26 | −1.9 (3) |
O2—C13—C14—C15 | −156.97 (18) | C27—C22—C23—C24 | 0.4 (3) |
O2—C13—C18—C17 | −167.73 (18) | C22—C23—C24—C25 | 0.7 (4) |
O2—C13—C18—C19 | 8.3 (3) | C23—C24—C25—C26 | −0.5 (4) |
C14—C13—C18—C17 | 11.0 (3) | C24—C25—C26—C27 | −0.8 (4) |
C14—C13—C18—C19 | −172.96 (18) | C25—C26—C27—N28 | −176.85 (19) |
C18—C13—C14—C15 | 24.2 (3) | C25—C26—C27—C22 | 2.1 (4) |
Symmetry codes: (i) x+1, y, z; (ii) −x, −y, −z; (iii) −x+1/2, y+1/2, −z+1/2; (iv) −x+1/2, y−1/2, −z+1/2; (v) −x+3/2, y+1/2, −z+1/2; (vi) x, y−1, z; (vii) x−1, y, z; (viii) −x, −y+1, −z; (ix) −x+3/2, y−1/2, −z+1/2; (x) x, y+1, z; (xi) −x+1, −y+1, −z; (xii) x−1, y−1, z; (xiii) x+1, y+1, z; (xiv) −x−1, −y, −z. |
D—H···A | D—H | H···A | D···A | D—H···A |
O2—H2···O3 | 0.82 | 1.83 | 2.627 (2) | 164 |
O4—H4···O1 | 0.82 | 1.78 | 2.579 (2) | 165 |
Experimental details
Crystal data | |
Chemical formula | C21H21NO6 |
Mr | 383.40 |
Crystal system, space group | Monoclinic, P21/n |
Temperature (K) | 296 |
a, b, c (Å) | 8.0785 (7), 8.7261 (6), 26.2616 (17) |
β (°) | 90.829 (3) |
V (Å3) | 1851.1 (3) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.10 |
Crystal size (mm) | 0.30 × 0.20 × 0.10 |
Data collection | |
Diffractometer | Rigaku R-AXIS RAPID diffractometer |
Absorption correction | Multi-scan (ABSCOR; Rigaku, 1995) |
Tmin, Tmax | 0.739, 0.990 |
No. of measured, independent and observed [F2 > 2σ(F2)] reflections | 14705, 3387, 2335 |
Rint | 0.028 |
(sin θ/λ)max (Å−1) | 0.602 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.045, 0.156, 1.14 |
No. of reflections | 3387 |
No. of parameters | 263 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.31, −0.24 |
Computer programs: RAPID-AUTO (Rigaku, 2006), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), CrystalStructure (Rigaku, 2010).
D—H···A | D—H | H···A | D···A | D—H···A |
O2—H2···O3 | 0.820 | 1.828 | 2.627 (2) | 164.2 |
O4—H4···O1 | 0.820 | 1.780 | 2.579 (2) | 164.5 |
Acknowledgements
This work was supported financially by a grant from the Korea Institute of Science and Technology (KIST).
References
Lee, J. K., Min, S.-J., Cho, Y. S., Cha, J. H. & Sato, H. (2011). Acta Cryst. E67, o3407. Web of Science CSD CrossRef IUCr Journals Google Scholar
Rigaku (1995). ABSCOR. Rigaku Corporation, Tokyo, Japan. Google Scholar
Rigaku (2006). RAPID-AUTO. Rigaku Corporation, Tokyo, Japan. Google Scholar
Rigaku (2010). CrystalStructure. Rigaku Corporation, Tokyo, Japan. Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
As part of our ongoing study of the substituent effect on the solid state structures of xanthene derivatives (Lee et al., 2011). We present here the crystal structure of the title compound (I) (Fig. 1).
In (I) (Fig. 1), the bond lengths and angles are normal and correspond to those observed in related structures Lee et al., 2011). In the title compound, both cyclohexenone rings in (Fig.1) display half-chair conformation. The nitro group is not co-planar with the benzene ring to which it is attached as seen in the O5—N28—C27—C26 torsion angle of 141.7 (2)°. The hydroxy and carbonyl O atoms face each other and are orientated to allow for the formation of two intramolecular O—H···O hydrogen bonds (Table 1) which are typical of xanthene derivatives.