metal-organic compounds
Bis[6-(1H-benzimidazol-2-yl-κN3)pyridine-2-carboxylato-κ2N,O]cobalt(II) dihydrate
aDepartment of Gynecology, The Second Hospital of Jilin University, Changchun 130041, People's Republic of China, and bDepartment of Vascular Surgery, The China-Japan Union Hospital of Jilin University, Changchun 130033, People's Republic of China
*Correspondence e-mail: doctorsundj@163.com
In the title compound, [Co(C13H8N3O2)2]·2H2O, the CoII atom has a distorted octahedral environment defined by four N atoms and two O atoms from two 6-(1H-benzimidazol-2-yl)pyridine-2-carboxylate ligands. In the crystal, the complex molecules and uncoordinated water molecules are linked via N—H⋯O and O—H⋯O hydrogen bonds, forming a two-dimensional supramolecular structure parallel to (010). π–π interactions are present between the imidazole, pyridine and benzene rings [centroid–centroid distances = 3.528 (2), 3.592 (2), 3.680 (2) and 3.732 (3) Å].
Related literature
For background to supramolecular architectures, see: Chun et al. (2005); Tranchemontagne et al. (2009). For related complexes with multidentate ligands, see: Eubank et al. (2011); Wang et al. (2009).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2007); cell SAINT (Bruker, 2007); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: XP in SHELXTL and Mercury (Macrae et al., 2006); software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009).
Supporting information
10.1107/S1600536811053700/hy2495sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536811053700/hy2495Isup2.hkl
The synthesis was performed under hydrothermal conditions. A mixture of CoCl2.6H2O (0.2 mmol, 0.050 g), 6-(1H-benzimidazol-2-yl)pyridine-2-carboxylic acid (0.4 mmol, 0.098 g), NaOH (0.4 mmol, 0.016 g) and H2O (15 ml) in a 25 ml stainless steel reactor with a Teflon liner was heated from 293 to 433 K in 2 h and a constant temperature was maintained at 433 K for 72 h. After the mixture was cooled to 298 K, pink crystals of the title compound were recovered from the reaction.
H atoms on C and N atoms were positioned geometrically and refined as riding atoms, with C—H = 0.95 and N—H = 0.88 Å and with Uiso(H) = 1.2Ueq(C, N). H atoms of the water molecules were located from a difference Fourier map and refined as riding, with Uiso(H) = 1.5Ueq(O).
Data collection: APEX2 (Bruker, 2007); cell
SAINT (Bruker, 2007); data reduction: SAINT (Bruker, 2007); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: XP in SHELXTL and Mercury (Macrae et al., 2006); software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).Fig. 1. The molecular structure of the title compound. Displacement ellipsoids are drawn at the 30% probability level. | |
Fig. 2. View of the two-dimensional structure of the title compound built by hydrogen bonds (dashed lines). |
[Co(C13H8N3O2)2]·2H2O | F(000) = 1172 |
Mr = 571.41 | Dx = 1.549 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 4827 reflections |
a = 9.8602 (5) Å | θ = 1.0–26.0° |
b = 20.3681 (11) Å | µ = 0.76 mm−1 |
c = 13.1069 (7) Å | T = 185 K |
β = 111.453 (1)° | Block, pink |
V = 2449.9 (2) Å3 | 0.24 × 0.15 × 0.12 mm |
Z = 4 |
Bruker APEXII CCD diffractometer | 4827 independent reflections |
Radiation source: fine-focus sealed tube | 3864 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.026 |
ϕ and ω scans | θmax = 26.1°, θmin = 2.0° |
Absorption correction: multi-scan (SADABS; Bruker, 2001) | h = −12→10 |
Tmin = 0.839, Tmax = 0.915 | k = −23→25 |
13443 measured reflections | l = −16→16 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.049 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.150 | H-atom parameters constrained |
S = 1.06 | w = 1/[σ2(Fo2) + (0.0767P)2 + 2.8721P] where P = (Fo2 + 2Fc2)/3 |
4827 reflections | (Δ/σ)max = 0.001 |
352 parameters | Δρmax = 0.96 e Å−3 |
6 restraints | Δρmin = −0.59 e Å−3 |
[Co(C13H8N3O2)2]·2H2O | V = 2449.9 (2) Å3 |
Mr = 571.41 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 9.8602 (5) Å | µ = 0.76 mm−1 |
b = 20.3681 (11) Å | T = 185 K |
c = 13.1069 (7) Å | 0.24 × 0.15 × 0.12 mm |
β = 111.453 (1)° |
Bruker APEXII CCD diffractometer | 4827 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2001) | 3864 reflections with I > 2σ(I) |
Tmin = 0.839, Tmax = 0.915 | Rint = 0.026 |
13443 measured reflections |
R[F2 > 2σ(F2)] = 0.049 | 6 restraints |
wR(F2) = 0.150 | H-atom parameters constrained |
S = 1.06 | Δρmax = 0.96 e Å−3 |
4827 reflections | Δρmin = −0.59 e Å−3 |
352 parameters |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
C1 | 0.1555 (4) | 0.35179 (16) | 0.7579 (3) | 0.0386 (8) | |
C2 | 0.3187 (4) | 0.35664 (15) | 0.8211 (3) | 0.0321 (7) | |
C3 | 0.4130 (4) | 0.30476 (16) | 0.8634 (3) | 0.0384 (8) | |
H3A | 0.3779 | 0.2609 | 0.8558 | 0.046* | |
C4 | 0.5581 (4) | 0.31795 (16) | 0.9164 (3) | 0.0404 (8) | |
H4A | 0.6245 | 0.2829 | 0.9462 | 0.048* | |
C5 | 0.6094 (4) | 0.38247 (16) | 0.9270 (3) | 0.0356 (7) | |
H5A | 0.7100 | 0.3920 | 0.9631 | 0.043* | |
C6 | 0.5091 (3) | 0.43192 (15) | 0.8833 (2) | 0.0290 (6) | |
C7 | 0.5339 (3) | 0.50287 (14) | 0.8836 (2) | 0.0278 (6) | |
C8 | 0.6304 (3) | 0.60145 (15) | 0.9040 (3) | 0.0308 (7) | |
C9 | 0.7184 (4) | 0.65706 (16) | 0.9248 (3) | 0.0393 (8) | |
H9A | 0.8210 | 0.6545 | 0.9619 | 0.047* | |
C10 | 0.6487 (4) | 0.71598 (17) | 0.8885 (3) | 0.0420 (8) | |
H10A | 0.7052 | 0.7550 | 0.9002 | 0.050* | |
C11 | 0.4972 (4) | 0.72036 (16) | 0.8348 (3) | 0.0388 (8) | |
H11A | 0.4534 | 0.7621 | 0.8127 | 0.047* | |
C12 | 0.4113 (4) | 0.66545 (15) | 0.8138 (3) | 0.0337 (7) | |
H12A | 0.3087 | 0.6684 | 0.7771 | 0.040* | |
C13 | 0.4794 (3) | 0.60507 (14) | 0.8482 (3) | 0.0287 (6) | |
C14 | 0.0579 (4) | 0.57477 (19) | 0.8491 (4) | 0.0512 (10) | |
C15 | 0.0334 (4) | 0.60199 (19) | 0.7370 (3) | 0.0502 (10) | |
C16 | −0.0381 (5) | 0.6601 (2) | 0.6968 (4) | 0.0728 (16) | |
H16A | −0.0828 | 0.6848 | 0.7375 | 0.087* | |
C17 | −0.0424 (6) | 0.6812 (2) | 0.5950 (4) | 0.088 (2) | |
H17A | −0.0897 | 0.7214 | 0.5657 | 0.105* | |
C18 | 0.0215 (6) | 0.6445 (2) | 0.5353 (4) | 0.0763 (16) | |
H18A | 0.0188 | 0.6586 | 0.4655 | 0.092* | |
C19 | 0.0896 (4) | 0.58621 (18) | 0.5817 (3) | 0.0498 (10) | |
C20 | 0.1695 (4) | 0.54082 (17) | 0.5376 (3) | 0.0446 (9) | |
C21 | 0.2695 (5) | 0.49105 (19) | 0.4359 (3) | 0.0518 (10) | |
C22 | 0.3211 (6) | 0.4676 (3) | 0.3561 (4) | 0.0721 (14) | |
H22A | 0.2964 | 0.4887 | 0.2870 | 0.087* | |
C23 | 0.4077 (6) | 0.4137 (3) | 0.3816 (4) | 0.0718 (14) | |
H23A | 0.4428 | 0.3967 | 0.3283 | 0.086* | |
C24 | 0.4476 (5) | 0.3820 (2) | 0.4829 (4) | 0.0620 (11) | |
H24A | 0.5105 | 0.3450 | 0.4976 | 0.074* | |
C25 | 0.3962 (4) | 0.40391 (19) | 0.5622 (3) | 0.0486 (9) | |
H25A | 0.4216 | 0.3824 | 0.6310 | 0.058* | |
C26 | 0.3061 (4) | 0.45864 (17) | 0.5370 (3) | 0.0409 (8) | |
N1 | 0.3673 (3) | 0.41784 (12) | 0.8317 (2) | 0.0284 (5) | |
N2 | 0.4214 (3) | 0.54241 (12) | 0.8366 (2) | 0.0287 (6) | |
N3 | 0.6612 (3) | 0.53553 (13) | 0.9257 (2) | 0.0334 (6) | |
H3 | 0.7476 | 0.5182 | 0.9605 | 0.040* | |
N4 | 0.0940 (3) | 0.56671 (14) | 0.6808 (3) | 0.0421 (7) | |
N5 | 0.2413 (3) | 0.49147 (13) | 0.5994 (2) | 0.0363 (6) | |
N6 | 0.1837 (4) | 0.54260 (16) | 0.4400 (3) | 0.0599 (10) | |
H6 | 0.1447 | 0.5718 | 0.3879 | 0.072* | |
O1 | 0.0911 (2) | 0.40631 (11) | 0.7254 (2) | 0.0416 (6) | |
O2 | 0.0977 (3) | 0.29740 (13) | 0.7412 (3) | 0.0601 (8) | |
O1W | 0.1067 (4) | 0.5642 (2) | 1.1243 (4) | 0.1120 (16) | |
H1A | 0.0385 | 0.5579 | 1.1501 | 0.168* | |
H1B | 0.0679 | 0.5744 | 1.0559 | 0.168* | |
O2W | −0.2043 (5) | 0.3346 (3) | 0.7130 (6) | 0.179 (3) | |
H2A | −0.1389 | 0.3089 | 0.7008 | 0.268* | |
H2B | −0.1663 | 0.3533 | 0.7805 | 0.268* | |
O3 | 0.1308 (3) | 0.52097 (12) | 0.8735 (2) | 0.0477 (6) | |
O4 | 0.0139 (3) | 0.60542 (18) | 0.9118 (3) | 0.0748 (10) | |
Co1 | 0.22295 (4) | 0.49008 (2) | 0.75644 (4) | 0.03024 (16) |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0422 (19) | 0.0317 (18) | 0.0419 (19) | −0.0054 (15) | 0.0154 (16) | 0.0014 (14) |
C2 | 0.0403 (18) | 0.0260 (16) | 0.0333 (16) | −0.0007 (13) | 0.0174 (14) | 0.0001 (12) |
C3 | 0.051 (2) | 0.0225 (16) | 0.0437 (19) | 0.0005 (14) | 0.0198 (16) | 0.0011 (13) |
C4 | 0.048 (2) | 0.0294 (17) | 0.0440 (19) | 0.0130 (15) | 0.0165 (16) | 0.0032 (14) |
C5 | 0.0355 (17) | 0.0300 (17) | 0.0404 (18) | 0.0058 (13) | 0.0128 (14) | −0.0023 (14) |
C6 | 0.0319 (16) | 0.0270 (16) | 0.0303 (16) | 0.0031 (12) | 0.0140 (13) | −0.0006 (12) |
C7 | 0.0294 (16) | 0.0278 (15) | 0.0289 (16) | 0.0022 (12) | 0.0140 (13) | −0.0021 (12) |
C8 | 0.0311 (16) | 0.0282 (16) | 0.0358 (17) | 0.0018 (12) | 0.0155 (13) | −0.0029 (13) |
C9 | 0.0330 (17) | 0.0362 (18) | 0.050 (2) | −0.0053 (14) | 0.0168 (16) | −0.0043 (15) |
C10 | 0.044 (2) | 0.0309 (18) | 0.054 (2) | −0.0087 (15) | 0.0213 (17) | −0.0022 (15) |
C11 | 0.0444 (19) | 0.0281 (17) | 0.045 (2) | 0.0003 (14) | 0.0172 (16) | 0.0027 (14) |
C12 | 0.0337 (17) | 0.0282 (16) | 0.0384 (18) | 0.0024 (13) | 0.0122 (14) | 0.0026 (13) |
C13 | 0.0317 (16) | 0.0262 (15) | 0.0330 (16) | −0.0021 (12) | 0.0176 (13) | −0.0032 (12) |
C14 | 0.0300 (18) | 0.049 (2) | 0.073 (3) | 0.0037 (16) | 0.0162 (18) | −0.020 (2) |
C15 | 0.0327 (19) | 0.046 (2) | 0.056 (2) | 0.0075 (16) | −0.0028 (16) | −0.0218 (18) |
C16 | 0.058 (3) | 0.059 (3) | 0.068 (3) | 0.031 (2) | −0.016 (2) | −0.027 (2) |
C17 | 0.095 (4) | 0.052 (3) | 0.068 (3) | 0.041 (3) | −0.027 (3) | −0.019 (2) |
C18 | 0.098 (4) | 0.042 (2) | 0.049 (2) | 0.020 (2) | −0.020 (2) | −0.0059 (19) |
C19 | 0.054 (2) | 0.0320 (18) | 0.043 (2) | 0.0024 (16) | −0.0060 (17) | −0.0085 (15) |
C20 | 0.054 (2) | 0.0291 (18) | 0.0378 (19) | −0.0060 (16) | 0.0019 (16) | −0.0007 (14) |
C21 | 0.069 (3) | 0.045 (2) | 0.042 (2) | −0.0137 (19) | 0.020 (2) | −0.0004 (17) |
C22 | 0.110 (4) | 0.069 (3) | 0.049 (3) | −0.016 (3) | 0.044 (3) | −0.001 (2) |
C23 | 0.093 (4) | 0.080 (3) | 0.063 (3) | −0.011 (3) | 0.054 (3) | −0.008 (3) |
C24 | 0.070 (3) | 0.058 (3) | 0.072 (3) | −0.001 (2) | 0.042 (2) | −0.013 (2) |
C25 | 0.058 (2) | 0.047 (2) | 0.051 (2) | 0.0019 (18) | 0.0310 (19) | −0.0018 (17) |
C26 | 0.048 (2) | 0.0347 (18) | 0.044 (2) | −0.0115 (15) | 0.0210 (16) | −0.0069 (15) |
N1 | 0.0339 (14) | 0.0228 (12) | 0.0306 (13) | 0.0019 (10) | 0.0143 (11) | 0.0002 (10) |
N2 | 0.0276 (13) | 0.0253 (13) | 0.0342 (14) | 0.0013 (10) | 0.0124 (11) | −0.0012 (10) |
N3 | 0.0255 (13) | 0.0306 (14) | 0.0428 (16) | 0.0031 (11) | 0.0109 (12) | −0.0021 (12) |
N4 | 0.0343 (15) | 0.0312 (15) | 0.0485 (18) | 0.0017 (12) | 0.0004 (13) | −0.0095 (13) |
N5 | 0.0421 (16) | 0.0287 (14) | 0.0378 (16) | −0.0047 (12) | 0.0141 (13) | −0.0024 (11) |
N6 | 0.093 (3) | 0.0400 (19) | 0.0360 (18) | −0.0024 (18) | 0.0105 (18) | 0.0061 (14) |
O1 | 0.0357 (13) | 0.0314 (12) | 0.0534 (15) | −0.0017 (10) | 0.0111 (11) | 0.0030 (11) |
O2 | 0.0529 (17) | 0.0332 (14) | 0.082 (2) | −0.0138 (12) | 0.0099 (15) | 0.0031 (13) |
O1W | 0.063 (2) | 0.130 (3) | 0.157 (4) | 0.002 (2) | 0.056 (2) | 0.065 (3) |
O2W | 0.064 (3) | 0.174 (6) | 0.278 (8) | −0.023 (3) | 0.038 (4) | −0.033 (5) |
O3 | 0.0461 (15) | 0.0418 (14) | 0.0653 (17) | −0.0004 (11) | 0.0321 (13) | −0.0061 (12) |
O4 | 0.0603 (19) | 0.086 (2) | 0.082 (2) | 0.0234 (17) | 0.0312 (17) | −0.0224 (18) |
Co1 | 0.0299 (3) | 0.0230 (2) | 0.0377 (3) | 0.00136 (16) | 0.01228 (19) | −0.00077 (17) |
C1—O2 | 1.228 (4) | C16—H16A | 0.9500 |
C1—O1 | 1.273 (4) | C17—C18 | 1.389 (8) |
C1—C2 | 1.520 (5) | C17—H17A | 0.9500 |
C2—N1 | 1.324 (4) | C18—C19 | 1.390 (5) |
C2—C3 | 1.383 (5) | C18—H18A | 0.9500 |
C3—C4 | 1.369 (5) | C19—N4 | 1.344 (5) |
C3—H3A | 0.9500 | C19—C20 | 1.463 (6) |
C4—C5 | 1.396 (5) | C20—N5 | 1.322 (4) |
C4—H4A | 0.9500 | C20—N6 | 1.337 (5) |
C5—C6 | 1.381 (4) | C21—N6 | 1.362 (6) |
C5—H5A | 0.9500 | C21—C22 | 1.403 (6) |
C6—N1 | 1.343 (4) | C21—C26 | 1.404 (5) |
C6—C7 | 1.466 (4) | C22—C23 | 1.356 (7) |
C7—N2 | 1.326 (4) | C22—H22A | 0.9500 |
C7—N3 | 1.347 (4) | C23—C24 | 1.398 (7) |
C8—N3 | 1.383 (4) | C23—H23A | 0.9500 |
C8—C9 | 1.392 (4) | C24—C25 | 1.386 (5) |
C8—C13 | 1.400 (4) | C24—H24A | 0.9500 |
C9—C10 | 1.379 (5) | C25—C26 | 1.388 (5) |
C9—H9A | 0.9500 | C25—H25A | 0.9500 |
C10—C11 | 1.402 (5) | C26—N5 | 1.381 (4) |
C10—H10A | 0.9500 | N1—Co1 | 2.034 (2) |
C11—C12 | 1.369 (5) | N2—Co1 | 2.137 (3) |
C11—H11A | 0.9500 | N3—H3 | 0.8800 |
C12—C13 | 1.395 (4) | N4—Co1 | 2.028 (3) |
C12—H12A | 0.9500 | N5—Co1 | 2.132 (3) |
C13—N2 | 1.384 (4) | N6—H6 | 0.8800 |
C14—O4 | 1.231 (5) | O1—Co1 | 2.093 (2) |
C14—O3 | 1.285 (5) | O1W—H1A | 0.8661 |
C14—C15 | 1.506 (6) | O1W—H1B | 0.8622 |
C15—N4 | 1.318 (5) | O2W—H2A | 0.8899 |
C15—C16 | 1.380 (5) | O2W—H2B | 0.9083 |
C16—C17 | 1.388 (8) | O3—Co1 | 2.144 (3) |
O2—C1—O1 | 125.8 (3) | N5—C20—C19 | 118.9 (3) |
O2—C1—C2 | 119.0 (3) | N6—C20—C19 | 128.3 (3) |
O1—C1—C2 | 115.1 (3) | N6—C21—C22 | 133.8 (4) |
N1—C2—C3 | 120.9 (3) | N6—C21—C26 | 105.9 (3) |
N1—C2—C1 | 112.9 (3) | C22—C21—C26 | 120.3 (4) |
C3—C2—C1 | 126.3 (3) | C23—C22—C21 | 117.4 (4) |
C4—C3—C2 | 118.6 (3) | C23—C22—H22A | 121.3 |
C4—C3—H3A | 120.7 | C21—C22—H22A | 121.3 |
C2—C3—H3A | 120.7 | C22—C23—C24 | 122.7 (4) |
C3—C4—C5 | 120.5 (3) | C22—C23—H23A | 118.6 |
C3—C4—H4A | 119.7 | C24—C23—H23A | 118.6 |
C5—C4—H4A | 119.7 | C25—C24—C23 | 120.7 (4) |
C6—C5—C4 | 117.8 (3) | C25—C24—H24A | 119.6 |
C6—C5—H5A | 121.1 | C23—C24—H24A | 119.6 |
C4—C5—H5A | 121.1 | C24—C25—C26 | 117.2 (4) |
N1—C6—C5 | 120.6 (3) | C24—C25—H25A | 121.4 |
N1—C6—C7 | 110.8 (3) | C26—C25—H25A | 121.4 |
C5—C6—C7 | 128.6 (3) | N5—C26—C25 | 129.9 (3) |
N2—C7—N3 | 112.7 (3) | N5—C26—C21 | 108.5 (3) |
N2—C7—C6 | 119.1 (3) | C25—C26—C21 | 121.6 (4) |
N3—C7—C6 | 128.2 (3) | C2—N1—C6 | 121.6 (3) |
N3—C8—C9 | 132.5 (3) | C2—N1—Co1 | 117.9 (2) |
N3—C8—C13 | 105.7 (3) | C6—N1—Co1 | 120.3 (2) |
C9—C8—C13 | 121.8 (3) | C7—N2—C13 | 105.5 (3) |
C10—C9—C8 | 116.4 (3) | C7—N2—Co1 | 112.7 (2) |
C10—C9—H9A | 121.8 | C13—N2—Co1 | 141.4 (2) |
C8—C9—H9A | 121.8 | C7—N3—C8 | 107.1 (3) |
C9—C10—C11 | 122.3 (3) | C7—N3—H3 | 126.5 |
C9—C10—H10A | 118.9 | C8—N3—H3 | 126.5 |
C11—C10—H10A | 118.9 | C15—N4—C19 | 121.2 (3) |
C12—C11—C10 | 121.1 (3) | C15—N4—Co1 | 118.5 (3) |
C12—C11—H11A | 119.5 | C19—N4—Co1 | 119.5 (2) |
C10—C11—H11A | 119.5 | C20—N5—C26 | 105.4 (3) |
C11—C12—C13 | 117.8 (3) | C20—N5—Co1 | 112.7 (2) |
C11—C12—H12A | 121.1 | C26—N5—Co1 | 141.9 (2) |
C13—C12—H12A | 121.1 | C20—N6—C21 | 107.5 (3) |
N2—C13—C12 | 130.3 (3) | C20—N6—H6 | 126.2 |
N2—C13—C8 | 109.1 (3) | C21—N6—H6 | 126.2 |
C12—C13—C8 | 120.6 (3) | C1—O1—Co1 | 116.6 (2) |
O4—C14—O3 | 124.6 (4) | H1A—O1W—H1B | 109.2 |
O4—C14—C15 | 119.7 (4) | H2A—O2W—H2B | 110.8 |
O3—C14—C15 | 115.6 (3) | C14—O3—Co1 | 114.7 (3) |
N4—C15—C16 | 121.9 (4) | N4—Co1—N1 | 174.98 (11) |
N4—C15—C14 | 113.6 (3) | N4—Co1—O1 | 107.37 (10) |
C16—C15—C14 | 124.4 (4) | N1—Co1—O1 | 77.25 (10) |
C15—C16—C17 | 117.6 (4) | N4—Co1—N5 | 77.12 (12) |
C15—C16—H16A | 121.2 | N1—Co1—N5 | 100.74 (10) |
C17—C16—H16A | 121.2 | O1—Co1—N5 | 95.12 (10) |
C16—C17—C18 | 121.0 (4) | N4—Co1—N2 | 98.86 (10) |
C16—C17—H17A | 119.5 | N1—Co1—N2 | 76.70 (10) |
C18—C17—H17A | 119.5 | O1—Co1—N2 | 153.43 (10) |
C17—C18—C19 | 117.4 (5) | N5—Co1—N2 | 94.71 (10) |
C17—C18—H18A | 121.3 | N4—Co1—O3 | 76.70 (12) |
C19—C18—H18A | 121.3 | N1—Co1—O3 | 105.66 (10) |
N4—C19—C18 | 121.0 (4) | O1—Co1—O3 | 89.01 (10) |
N4—C19—C20 | 111.3 (3) | N5—Co1—O3 | 153.54 (11) |
C18—C19—C20 | 127.6 (4) | N2—Co1—O3 | 93.05 (10) |
N5—C20—N6 | 112.7 (4) |
D—H···A | D—H | H···A | D···A | D—H···A |
N3—H3···O3i | 0.88 | 2.21 | 2.917 (4) | 137 |
N6—H6···O1ii | 0.88 | 2.30 | 2.971 (4) | 133 |
O1W—H1A···O3iii | 0.87 | 2.26 | 2.923 (4) | 134 |
O1W—H1B···O4 | 0.86 | 1.87 | 2.727 (6) | 170 |
O2W—H2A···O2 | 0.89 | 2.21 | 2.962 (6) | 142 |
O2W—H2B···O1Wiii | 0.91 | 2.05 | 2.867 (8) | 149 |
Symmetry codes: (i) −x+1, −y+1, −z+2; (ii) −x, −y+1, −z+1; (iii) −x, −y+1, −z+2. |
Experimental details
Crystal data | |
Chemical formula | [Co(C13H8N3O2)2]·2H2O |
Mr | 571.41 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 185 |
a, b, c (Å) | 9.8602 (5), 20.3681 (11), 13.1069 (7) |
β (°) | 111.453 (1) |
V (Å3) | 2449.9 (2) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.76 |
Crystal size (mm) | 0.24 × 0.15 × 0.12 |
Data collection | |
Diffractometer | Bruker APEXII CCD diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2001) |
Tmin, Tmax | 0.839, 0.915 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 13443, 4827, 3864 |
Rint | 0.026 |
(sin θ/λ)max (Å−1) | 0.618 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.049, 0.150, 1.06 |
No. of reflections | 4827 |
No. of parameters | 352 |
No. of restraints | 6 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.96, −0.59 |
Computer programs: APEX2 (Bruker, 2007), SAINT (Bruker, 2007), XP in SHELXTL and Mercury (Macrae et al., 2006), SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
N3—H3···O3i | 0.88 | 2.21 | 2.917 (4) | 137 |
N6—H6···O1ii | 0.88 | 2.30 | 2.971 (4) | 133 |
O1W—H1A···O3iii | 0.87 | 2.26 | 2.923 (4) | 134 |
O1W—H1B···O4 | 0.86 | 1.87 | 2.727 (6) | 170 |
O2W—H2A···O2 | 0.89 | 2.21 | 2.962 (6) | 142 |
O2W—H2B···O1Wiii | 0.91 | 2.05 | 2.867 (8) | 149 |
Symmetry codes: (i) −x+1, −y+1, −z+2; (ii) −x, −y+1, −z+1; (iii) −x, −y+1, −z+2. |
Acknowledgements
The authors thank Jilin University for supporting this work.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Molecular self-assembly of supramolecular architectures has received much attention during recent decades (Chun et al., 2005; Tranchemontagne et al., 2009). The structures and properties of such systems depend on the coordination and geometric preferences of both the central metal ions and bridging building blocks, as well as on the influence of weaker non-covalent interactions, such as hydrogen bonds and π–π stacking interactions. Multidentate ligands containing rich coordination sites (N and/or O donors) are often employed to produce polymeric networks with structural diversity owing to their various coordination modes (Eubank et al., 2011; Wang et al., 2009). Recently, we obtained the title mononuclear complex by the reaction of cobalt chloride with 6-(1H-benzimidazol-2-yl)pyridine-2-carboxylic acid using hydrothermal methods and its crystal structure is reported here.
In the title compound, the CoII atom has a distorted octahedral environment with four N atoms and two carboxylate O atoms from two 6-(1H-benzimidazol-2-yl)pyridine-2-carboxylate ligands (Fig. 1). The bond lengths and angles around the Co atom are normal. The complex molecules and uncoordinated water molecules are connected into a two-dimensional structure by extensive N—H···O and O—H···O hydrogen bonds (Fig. 2, Table 1). π–π interactions between the imidazole, pyridine and benzene rings are present [centroid–centroid distances = 3.528 (2), 3.592 (2), 3.680 (2) and 3.732 (3) Å].