metal-organic compounds
2,9-Dimethyl-1,10-phenanthrolin-1-ium (6-carboxy-4-hydroxypyridine-2-carboxylato-κ3O2,N,O6)(4-hydroxypyridine-2,6-dicarboxylato-κ3O2,N,O6)zincate(II) 2.35-hydrate: a proton-transfer compound
aFaculty of Science, Department of Chemistry, Khorramabad Branch, Islamic Azad University, Khorramabad, Iran, bInstitute of Physics, University of Neuchâtel, Rue Emile-Argand 11, CH-2000 Neuchâtel, Switzerland, and cIran Compiling Encyclopedia Foundation, Tajrish, Tehran, Iran
*Correspondence e-mail: zderik@yahoo.com
In the title compound, (C14H13N2)[Zn(C7H3NO5)(C7H4NO5)]·2.35H2O, the ZnII atom is coordinated by two N atoms and four O atoms from the carboxylate groups of the 4-hydroxypyridine-2,6-dicarboxylate and 6-carboxy-4-hydroxypyridine-2-carboxylate ligands, forming a distored octahedral geometry. In the anion, the two pyridine rings are inclined to one another by 87.75 (13)°. Two types of robust O—H⋯O hydrogen bond synthons, viz. R22(16) and R66(42), link the anions to form a two-dimensional network parallel to the bc plane. Furthermore, O—H⋯O, N—H⋯O, N—H⋯N and weak C—H⋯O hydrogen bonds connect the two dimensional networks, forming a three-dimensional structure. In the crystal, there are also C—H⋯π and π–π interactions [centroid–centroid distances of 3.5554 (18) and 3.7681 (18) Å], and C=O⋯π interactions [O⋯centroid distance = 3.117 (2) Å] present. One of the three crystal water molecules shows an occupancy of 0.35.
Related literature
For related structures, see: Aghabozorg et al. (2007a,b,c, 2008a,b,c); Derakhshandeh et al. (2010); Moghimi et al. (2005a,b).
Experimental
Crystal data
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Refinement
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Data collection: EXPOSE in IPDS-I (Stoe & Cie, 2000); cell CELL in IPDS-I; data reduction: INTEGRATE in IPDS-I; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: PLATON (Spek, 2009) and Mercury (Macrae et al., 2008); software used to prepare material for publication: SHELXL97, PLATON and publCIF (Westrip, 2010).
Supporting information
10.1107/S1600536811052445/lh5386sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536811052445/lh5386Isup2.hkl
The reaction between 4-hydroxypyridine-2,6-dicarboxylic acid (100 mg, 1 mmol) in 10 ml water, 2,9-dimethyl-1,10-phenanthroline(dmp) (110 mg, 1 mmol) in 20 ml water and zinc(II)nitrate hexahydrate (90 mg, 0.5 mmol) in 5 ml water, in a 2:2:1 molar ratio, gave colourless crystals after slow evaporation of the solvent at room temperature.
The water H-atoms could all be located in difference Fourier maps. They were refined with distance restraints, O—H = 0.84 (2) Å and H···H = 1.35 (2) Å, with Uiso(H) = 1.5Ueq(O). The NH, OH and C-bound H-atoms were included in calculated postions and treated as riding atoms: O—H = 0.83 Å, N—H = 0.87 Å, C—H = 0.94 and 0.97 Å for CH and CH3 H atoms, respectively, with Uiso(H) = k × Ueq(O,N,C), where k = 1.5 for OH and CH3 H atoms and k = 1.2 for all other H atoms.
Data collection: EXPOSE in IPDS-I (Stoe & Cie, 2000); cell
CELL in IPDS-I (Stoe & Cie, 2000); data reduction: INTEGRATE in IPDS-I (Stoe & Cie, 2000); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: PLATON (Spek, 2009) and Mercury (Macrae et al., 2008); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008), PLATON (Spek, 2009) and publCIF (Westrip, 2010).Fig. 1. The molecular structure of the title compound, showing the displacement ellipsoids at the 50% probability level. | |
Fig. 2. A view along the a axis of the robust O–H···O hydrogen bond synthons, (I) R22(16) and (II) R66(42) forming a two-dimensional network parallel to the bc plane [the dashed cyan lines show donor-acceptor distances of hydrogen bonds]. | |
Fig. 3. Crystal packing of the title compound viewed along the b axis. The O—H···O and N—H···N,O hydrogen bonds are shown as dashed lines [anion is black; cation is red; water molecules are blue, green and yellow]. | |
Fig. 4. A view of the π···π stacking interactions involving the aromatic rings of the anions [(hpydc)2- and (hpydcH)-] and the cations [(dmpH)+], and the C═O···π and C–H···π interactions (see Comment section and Table 1 for details). |
(C14H13N2)[Zn(C7H3NO5)(C7H4NO5)]·2.35H2O | F(000) = 1398 |
Mr = 680.19 | Dx = 1.622 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 8000 reflections |
a = 11.0687 (18) Å | θ = 2.2–26.0° |
b = 9.7888 (14) Å | µ = 0.96 mm−1 |
c = 25.776 (4) Å | T = 223 K |
β = 94.160 (19)° | Rod, colourless |
V = 2785.4 (7) Å3 | 0.38 × 0.15 × 0.15 mm |
Z = 4 |
Stoe IPDS diffractometer | 5464 independent reflections |
Radiation source: fine-focus sealed tube | 3242 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.079 |
phi rotation scans | θmax = 26.1°, θmin = 2.2° |
Absorption correction: multi-scan (MULscanABS in PLATON; Spek, 2009) | h = −13→13 |
Tmin = 0.972, Tmax = 1.000 | k = −12→12 |
20517 measured reflections | l = −31→31 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.039 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.081 | w = 1/[σ2(Fo2) + (0.0381P)2] where P = (Fo2 + 2Fc2)/3 |
S = 0.82 | (Δ/σ)max = 0.002 |
5464 reflections | Δρmax = 0.39 e Å−3 |
437 parameters | Δρmin = −0.82 e Å−3 |
12 restraints | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.00093 (19) |
(C14H13N2)[Zn(C7H3NO5)(C7H4NO5)]·2.35H2O | V = 2785.4 (7) Å3 |
Mr = 680.19 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 11.0687 (18) Å | µ = 0.96 mm−1 |
b = 9.7888 (14) Å | T = 223 K |
c = 25.776 (4) Å | 0.38 × 0.15 × 0.15 mm |
β = 94.160 (19)° |
Stoe IPDS diffractometer | 5464 independent reflections |
Absorption correction: multi-scan (MULscanABS in PLATON; Spek, 2009) | 3242 reflections with I > 2σ(I) |
Tmin = 0.972, Tmax = 1.000 | Rint = 0.079 |
20517 measured reflections |
R[F2 > 2σ(F2)] = 0.039 | 12 restraints |
wR(F2) = 0.081 | H atoms treated by a mixture of independent and constrained refinement |
S = 0.82 | Δρmax = 0.39 e Å−3 |
5464 reflections | Δρmin = −0.82 e Å−3 |
437 parameters |
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
Zn1 | 0.14673 (3) | 0.98758 (4) | 0.15309 (1) | 0.0276 (1) | |
O1 | 0.15029 (16) | 1.0865 (2) | 0.22605 (8) | 0.0289 (7) | |
O2 | 0.25273 (17) | 1.0801 (2) | 0.30401 (8) | 0.0274 (6) | |
O3 | 0.21577 (18) | 0.8234 (2) | 0.09690 (8) | 0.0314 (7) | |
O4 | 0.3476 (2) | 0.6508 (3) | 0.09550 (10) | 0.0689 (10) | |
O5 | 0.5868 (2) | 0.7374 (2) | 0.27002 (9) | 0.0447 (8) | |
O6 | −0.00735 (17) | 0.8304 (2) | 0.17669 (8) | 0.0297 (7) | |
O7 | −0.19803 (19) | 0.7776 (2) | 0.14763 (9) | 0.0401 (8) | |
O8 | 0.20512 (17) | 1.1572 (2) | 0.11038 (8) | 0.0322 (7) | |
O9 | 0.1454 (2) | 1.2917 (2) | 0.04327 (9) | 0.0413 (8) | |
O10 | −0.26324 (18) | 1.0555 (2) | −0.01266 (8) | 0.0389 (8) | |
N1 | 0.28365 (19) | 0.8892 (2) | 0.19133 (9) | 0.0215 (7) | |
N2 | 0.00293 (18) | 1.0208 (2) | 0.10403 (9) | 0.0213 (7) | |
C1 | 0.3153 (2) | 0.9352 (3) | 0.23913 (11) | 0.0201 (8) | |
C2 | 0.4150 (2) | 0.8856 (3) | 0.26789 (11) | 0.0228 (8) | |
C3 | 0.4854 (2) | 0.7857 (3) | 0.24588 (12) | 0.0278 (10) | |
C4 | 0.4493 (3) | 0.7357 (3) | 0.19700 (12) | 0.0281 (9) | |
C5 | 0.3486 (2) | 0.7895 (3) | 0.17071 (11) | 0.0230 (9) | |
C6 | 0.2327 (2) | 1.0437 (3) | 0.25746 (11) | 0.0220 (8) | |
C7 | 0.3012 (3) | 0.7494 (3) | 0.11652 (12) | 0.0317 (10) | |
C8 | −0.0969 (2) | 0.9428 (3) | 0.10265 (11) | 0.0222 (8) | |
C9 | −0.1869 (2) | 0.9531 (3) | 0.06417 (11) | 0.0270 (9) | |
C10 | −0.1751 (2) | 1.0492 (3) | 0.02501 (11) | 0.0260 (9) | |
C11 | −0.0730 (2) | 1.1329 (3) | 0.02694 (11) | 0.0237 (9) | |
C12 | 0.0138 (2) | 1.1140 (3) | 0.06687 (11) | 0.0218 (9) | |
C13 | −0.0976 (2) | 0.8425 (3) | 0.14675 (11) | 0.0255 (9) | |
C14 | 0.1313 (3) | 1.1960 (3) | 0.07331 (12) | 0.0279 (10) | |
N3 | 0.8557 (2) | 0.4051 (2) | 0.10378 (9) | 0.0258 (8) | |
N4 | 0.6479 (2) | 0.2623 (3) | 0.08062 (10) | 0.0367 (9) | |
C15 | 0.9555 (2) | 0.4806 (3) | 0.11164 (11) | 0.0291 (9) | |
C16 | 1.0300 (3) | 0.4557 (3) | 0.15657 (12) | 0.0356 (11) | |
C17 | 1.0020 (3) | 0.3569 (3) | 0.19104 (13) | 0.0336 (10) | |
C18 | 0.8955 (3) | 0.2793 (3) | 0.18217 (12) | 0.0280 (9) | |
C19 | 0.8607 (3) | 0.1741 (3) | 0.21645 (13) | 0.0350 (11) | |
C20 | 0.7593 (3) | 0.1014 (3) | 0.20556 (13) | 0.0383 (11) | |
C21 | 0.6825 (3) | 0.1273 (3) | 0.15952 (12) | 0.0333 (10) | |
C22 | 0.5761 (3) | 0.0541 (4) | 0.14581 (16) | 0.0508 (12) | |
C23 | 0.5108 (3) | 0.0864 (4) | 0.10097 (16) | 0.0546 (16) | |
C24 | 0.5479 (3) | 0.1905 (4) | 0.06875 (14) | 0.0463 (13) | |
C25 | 0.7131 (3) | 0.2303 (3) | 0.12519 (12) | 0.0301 (10) | |
C26 | 0.8223 (3) | 0.3064 (3) | 0.13721 (12) | 0.0267 (9) | |
C27 | 0.9843 (3) | 0.5828 (3) | 0.07228 (13) | 0.0380 (11) | |
C28 | 0.4762 (3) | 0.2261 (5) | 0.01921 (16) | 0.0668 (18) | |
O1W | 0.7545 (3) | 0.4750 (3) | 0.00253 (10) | 0.0581 (10) | |
O2W | 0.6528 (3) | 0.8705 (3) | 0.35323 (11) | 0.0646 (11) | |
O3W | 0.5323 (7) | 0.4978 (8) | 0.0999 (3) | 0.067 (3) | 0.350 |
H2 | 0.43540 | 0.91820 | 0.30170 | 0.0270* | |
H4 | 0.49330 | 0.66560 | 0.18210 | 0.0340* | |
H5 | 0.59810 | 0.77430 | 0.29900 | 0.0670* | |
H7 | −0.19040 | 0.71470 | 0.16920 | 0.0600* | |
H9 | −0.25570 | 0.89670 | 0.06400 | 0.0320* | |
H10 | −0.24150 | 1.10420 | −0.03660 | 0.0580* | |
H11 | −0.06410 | 1.20040 | 0.00160 | 0.0280* | |
H3 | 0.80910 | 0.41970 | 0.07570 | 0.0310* | |
H16 | 1.10080 | 0.50780 | 0.16320 | 0.0430* | |
H17 | 1.05410 | 0.34060 | 0.22090 | 0.0400* | |
H19 | 0.90950 | 0.15550 | 0.24700 | 0.0420* | |
H20 | 0.73840 | 0.03220 | 0.22850 | 0.0460* | |
H22 | 0.55050 | −0.01610 | 0.16730 | 0.0610* | |
H23 | 0.43930 | 0.03780 | 0.09140 | 0.0660* | |
H27A | 0.91050 | 0.62890 | 0.05940 | 0.0570* | |
H27B | 1.02020 | 0.53750 | 0.04370 | 0.0570* | |
H27C | 1.04090 | 0.64920 | 0.08790 | 0.0570* | |
H28A | 0.44320 | 0.31740 | 0.02190 | 0.1000* | |
H28B | 0.52840 | 0.22280 | −0.00940 | 0.1000* | |
H28C | 0.41050 | 0.16120 | 0.01300 | 0.1000* | |
H1WA | 0.774 (4) | 0.546 (3) | −0.0123 (16) | 0.0870* | |
H1WB | 0.713 (4) | 0.427 (3) | −0.0189 (14) | 0.0870* | |
H2WA | 0.687 (4) | 0.814 (3) | 0.3724 (16) | 0.0970* | |
H2WB | 0.657 (3) | 0.948 (2) | 0.3640 (17) | 0.0970* | |
H3WA | 0.483 (6) | 0.559 (4) | 0.105 (5) | 0.1010* | 0.350 |
H3WB | 0.523 (3) | 0.430 (3) | 0.1179 (8) | 0.1010* | 0.350 |
U11 | U22 | U33 | U12 | U13 | U23 | |
Zn1 | 0.0267 (2) | 0.0298 (2) | 0.0248 (2) | 0.0004 (2) | −0.0081 (1) | 0.0028 (2) |
O1 | 0.0257 (10) | 0.0283 (12) | 0.0313 (12) | 0.0070 (9) | −0.0067 (9) | −0.0021 (10) |
O2 | 0.0335 (11) | 0.0264 (11) | 0.0219 (11) | 0.0065 (9) | −0.0003 (9) | −0.0041 (9) |
O3 | 0.0339 (12) | 0.0381 (13) | 0.0211 (11) | −0.0020 (10) | −0.0047 (9) | −0.0005 (10) |
O4 | 0.0615 (17) | 0.091 (2) | 0.0508 (17) | 0.0338 (16) | −0.0196 (13) | −0.0456 (16) |
O5 | 0.0410 (13) | 0.0526 (16) | 0.0375 (14) | 0.0277 (11) | −0.0168 (11) | −0.0113 (12) |
O6 | 0.0293 (11) | 0.0335 (12) | 0.0253 (11) | −0.0030 (9) | −0.0039 (9) | 0.0067 (10) |
O7 | 0.0355 (12) | 0.0417 (14) | 0.0419 (14) | −0.0137 (11) | −0.0056 (10) | 0.0226 (12) |
O8 | 0.0279 (11) | 0.0344 (12) | 0.0324 (13) | −0.0099 (9) | −0.0108 (9) | 0.0035 (10) |
O9 | 0.0481 (14) | 0.0333 (13) | 0.0408 (14) | −0.0172 (11) | −0.0079 (11) | 0.0170 (12) |
O10 | 0.0306 (11) | 0.0603 (16) | 0.0238 (12) | −0.0119 (10) | −0.0114 (9) | 0.0133 (11) |
N1 | 0.0228 (12) | 0.0219 (12) | 0.0195 (12) | −0.0016 (10) | −0.0009 (9) | −0.0034 (10) |
N2 | 0.0232 (11) | 0.0196 (12) | 0.0208 (11) | −0.0016 (10) | −0.0006 (9) | −0.0015 (11) |
C1 | 0.0240 (14) | 0.0176 (14) | 0.0187 (14) | −0.0021 (11) | 0.0015 (11) | 0.0000 (12) |
C2 | 0.0258 (14) | 0.0244 (15) | 0.0172 (14) | 0.0016 (12) | −0.0045 (11) | 0.0009 (13) |
C3 | 0.0268 (16) | 0.0275 (17) | 0.0281 (17) | 0.0076 (13) | −0.0052 (13) | 0.0011 (14) |
C4 | 0.0331 (16) | 0.0248 (16) | 0.0260 (16) | 0.0078 (13) | 0.0005 (13) | −0.0041 (14) |
C5 | 0.0272 (15) | 0.0217 (15) | 0.0197 (15) | 0.0014 (12) | −0.0002 (12) | −0.0040 (13) |
C6 | 0.0210 (13) | 0.0236 (16) | 0.0211 (15) | −0.0017 (11) | −0.0007 (11) | 0.0020 (12) |
C7 | 0.0308 (17) | 0.039 (2) | 0.0250 (17) | −0.0003 (14) | 0.0009 (13) | −0.0107 (15) |
C8 | 0.0198 (14) | 0.0242 (15) | 0.0224 (15) | −0.0023 (11) | 0.0009 (11) | 0.0015 (12) |
C9 | 0.0218 (14) | 0.0349 (18) | 0.0238 (16) | −0.0066 (12) | −0.0008 (12) | 0.0015 (13) |
C10 | 0.0224 (14) | 0.0356 (17) | 0.0192 (15) | 0.0027 (12) | −0.0047 (12) | −0.0002 (13) |
C11 | 0.0285 (15) | 0.0241 (16) | 0.0179 (14) | 0.0016 (12) | −0.0018 (12) | 0.0036 (13) |
C12 | 0.0263 (15) | 0.0193 (15) | 0.0196 (15) | −0.0010 (12) | 0.0011 (11) | 0.0001 (13) |
C13 | 0.0256 (15) | 0.0264 (16) | 0.0242 (16) | −0.0045 (13) | −0.0004 (12) | 0.0017 (14) |
C14 | 0.0305 (16) | 0.0258 (17) | 0.0266 (17) | −0.0064 (13) | −0.0025 (13) | 0.0003 (14) |
N3 | 0.0271 (13) | 0.0261 (14) | 0.0240 (13) | −0.0001 (11) | −0.0002 (10) | −0.0024 (11) |
N4 | 0.0306 (14) | 0.0492 (18) | 0.0300 (15) | −0.0070 (12) | 0.0001 (12) | 0.0005 (13) |
C15 | 0.0306 (15) | 0.0296 (17) | 0.0273 (15) | −0.0015 (13) | 0.0036 (12) | −0.0037 (15) |
C16 | 0.0342 (17) | 0.038 (2) | 0.0338 (18) | −0.0056 (14) | −0.0037 (14) | −0.0048 (15) |
C17 | 0.0322 (17) | 0.0376 (19) | 0.0295 (18) | 0.0059 (14) | −0.0083 (13) | −0.0032 (16) |
C18 | 0.0340 (16) | 0.0254 (16) | 0.0244 (16) | 0.0064 (13) | 0.0010 (13) | −0.0027 (14) |
C19 | 0.0419 (19) | 0.0329 (18) | 0.0302 (18) | 0.0104 (15) | 0.0027 (14) | −0.0008 (15) |
C20 | 0.051 (2) | 0.0303 (19) | 0.0353 (19) | 0.0047 (16) | 0.0148 (16) | 0.0063 (16) |
C21 | 0.0373 (17) | 0.0335 (18) | 0.0302 (18) | −0.0054 (14) | 0.0091 (14) | 0.0008 (15) |
C22 | 0.048 (2) | 0.052 (2) | 0.054 (2) | −0.0172 (17) | 0.0154 (19) | 0.0017 (19) |
C23 | 0.040 (2) | 0.069 (3) | 0.055 (3) | −0.0253 (19) | 0.0050 (18) | 0.001 (2) |
C24 | 0.0295 (17) | 0.065 (3) | 0.044 (2) | −0.0114 (17) | 0.0000 (15) | −0.0022 (19) |
C25 | 0.0307 (16) | 0.0339 (18) | 0.0257 (16) | 0.0009 (13) | 0.0017 (13) | −0.0038 (14) |
C26 | 0.0301 (16) | 0.0248 (16) | 0.0253 (16) | 0.0024 (13) | 0.0030 (13) | −0.0027 (14) |
C27 | 0.0466 (19) | 0.0337 (19) | 0.0338 (19) | −0.0114 (15) | 0.0041 (15) | −0.0014 (16) |
C28 | 0.035 (2) | 0.106 (4) | 0.057 (3) | −0.020 (2) | −0.0126 (18) | 0.006 (3) |
O1W | 0.0858 (19) | 0.0464 (17) | 0.0386 (14) | −0.0232 (14) | −0.0184 (13) | 0.0125 (13) |
O2W | 0.081 (2) | 0.0485 (17) | 0.0573 (18) | 0.0233 (15) | −0.0433 (15) | −0.0106 (15) |
O3W | 0.065 (5) | 0.047 (5) | 0.087 (6) | 0.020 (4) | −0.011 (4) | −0.001 (5) |
Zn1—O1 | 2.113 (2) | C4—C5 | 1.367 (4) |
Zn1—O3 | 2.329 (2) | C5—C7 | 1.508 (4) |
Zn1—O6 | 2.408 (2) | C8—C13 | 1.503 (4) |
Zn1—O8 | 2.119 (2) | C8—C9 | 1.358 (4) |
Zn1—N1 | 1.995 (2) | C9—C10 | 1.393 (4) |
Zn1—N2 | 1.987 (2) | C10—C11 | 1.394 (4) |
O1—C6 | 1.247 (3) | C11—C12 | 1.369 (4) |
O2—C6 | 1.256 (3) | C12—C14 | 1.527 (4) |
O3—C7 | 1.267 (4) | C2—H2 | 0.9400 |
O4—C7 | 1.237 (4) | C4—H4 | 0.9400 |
O5—C3 | 1.330 (3) | C9—H9 | 0.9400 |
O6—C13 | 1.223 (3) | C11—H11 | 0.9400 |
O7—C13 | 1.282 (3) | C15—C27 | 1.476 (4) |
O8—C14 | 1.270 (4) | C15—C16 | 1.394 (4) |
O9—C14 | 1.233 (4) | C16—C17 | 1.364 (4) |
O10—C10 | 1.327 (3) | C17—C18 | 1.407 (5) |
O5—H5 | 0.8300 | C18—C19 | 1.428 (4) |
O7—H7 | 0.8300 | C18—C26 | 1.391 (4) |
O10—H10 | 0.8300 | C19—C20 | 1.341 (5) |
O1W—H1WB | 0.84 (4) | C20—C21 | 1.431 (5) |
O1W—H1WA | 0.83 (3) | C21—C25 | 1.399 (4) |
O2W—H2WB | 0.81 (2) | C21—C22 | 1.402 (5) |
O2W—H2WA | 0.82 (4) | C22—C23 | 1.355 (6) |
O3W—H3WB | 0.82 (3) | C23—C24 | 1.395 (5) |
O3W—H3WA | 0.83 (6) | C24—C28 | 1.495 (5) |
N1—C1 | 1.335 (4) | C25—C26 | 1.434 (5) |
N1—C5 | 1.344 (3) | C16—H16 | 0.9400 |
N2—C12 | 1.335 (4) | C17—H17 | 0.9400 |
N2—C8 | 1.342 (3) | C19—H19 | 0.9400 |
N3—C26 | 1.363 (4) | C20—H20 | 0.9400 |
N3—C15 | 1.332 (3) | C22—H22 | 0.9400 |
N4—C25 | 1.349 (4) | C23—H23 | 0.9400 |
N4—C24 | 1.328 (4) | C27—H27B | 0.9700 |
N3—H3 | 0.8700 | C27—H27A | 0.9700 |
C1—C6 | 1.500 (4) | C27—H27C | 0.9700 |
C1—C2 | 1.373 (4) | C28—H28C | 0.9700 |
C2—C3 | 1.396 (4) | C28—H28A | 0.9700 |
C3—C4 | 1.383 (4) | C28—H28B | 0.9700 |
O1—Zn1—O3 | 152.10 (8) | O6—C13—C8 | 119.5 (2) |
O1—Zn1—O6 | 92.05 (7) | O7—C13—C8 | 112.9 (2) |
O1—Zn1—O8 | 96.70 (8) | O6—C13—O7 | 127.6 (3) |
O1—Zn1—N1 | 79.45 (8) | O9—C14—C12 | 118.5 (3) |
O1—Zn1—N2 | 116.99 (8) | O8—C14—O9 | 126.6 (3) |
O3—Zn1—O6 | 89.23 (7) | O8—C14—C12 | 114.9 (3) |
O3—Zn1—O8 | 95.25 (8) | C1—C2—H2 | 121.00 |
O3—Zn1—N1 | 72.69 (8) | C3—C2—H2 | 121.00 |
O3—Zn1—N2 | 90.06 (8) | C5—C4—H4 | 120.00 |
O6—Zn1—O8 | 151.69 (7) | C3—C4—H4 | 120.00 |
O6—Zn1—N1 | 95.35 (8) | C8—C9—H9 | 121.00 |
O6—Zn1—N2 | 73.50 (8) | C10—C9—H9 | 121.00 |
O8—Zn1—N1 | 112.68 (8) | C12—C11—H11 | 121.00 |
O8—Zn1—N2 | 78.55 (8) | C10—C11—H11 | 121.00 |
N1—Zn1—N2 | 159.81 (9) | N3—C15—C27 | 119.3 (2) |
Zn1—O1—C6 | 112.91 (18) | N3—C15—C16 | 117.6 (3) |
Zn1—O3—C7 | 114.54 (19) | C16—C15—C27 | 123.1 (3) |
Zn1—O6—C13 | 109.86 (18) | C15—C16—C17 | 121.1 (3) |
Zn1—O8—C14 | 114.93 (18) | C16—C17—C18 | 120.3 (3) |
C3—O5—H5 | 109.00 | C17—C18—C26 | 117.6 (3) |
C13—O7—H7 | 109.00 | C19—C18—C26 | 119.1 (3) |
C10—O10—H10 | 109.00 | C17—C18—C19 | 123.3 (3) |
H1WA—O1W—H1WB | 108 (4) | C18—C19—C20 | 120.8 (3) |
H2WA—O2W—H2WB | 115 (4) | C19—C20—C21 | 121.1 (3) |
H3WA—O3W—H3WB | 113 (7) | C20—C21—C22 | 123.8 (3) |
Zn1—N1—C5 | 124.33 (19) | C22—C21—C25 | 116.5 (3) |
Zn1—N1—C1 | 115.63 (17) | C20—C21—C25 | 119.7 (3) |
C1—N1—C5 | 119.9 (2) | C21—C22—C23 | 118.8 (3) |
Zn1—N2—C8 | 122.97 (18) | C22—C23—C24 | 121.1 (3) |
Zn1—N2—C12 | 117.32 (16) | N4—C24—C28 | 117.1 (3) |
C8—N2—C12 | 119.2 (2) | N4—C24—C23 | 121.7 (3) |
C15—N3—C26 | 123.8 (3) | C23—C24—C28 | 121.2 (3) |
C24—N4—C25 | 117.3 (3) | C21—C25—C26 | 118.5 (3) |
C26—N3—H3 | 118.00 | N4—C25—C21 | 124.5 (3) |
C15—N3—H3 | 118.00 | N4—C25—C26 | 117.0 (3) |
C2—C1—C6 | 124.4 (3) | C18—C26—C25 | 120.8 (3) |
N1—C1—C6 | 113.9 (2) | N3—C26—C25 | 119.6 (3) |
N1—C1—C2 | 121.8 (2) | N3—C26—C18 | 119.6 (3) |
C1—C2—C3 | 118.6 (3) | C15—C16—H16 | 119.00 |
O5—C3—C4 | 118.6 (3) | C17—C16—H16 | 119.00 |
O5—C3—C2 | 122.4 (3) | C16—C17—H17 | 120.00 |
C2—C3—C4 | 119.0 (2) | C18—C17—H17 | 120.00 |
C3—C4—C5 | 119.1 (3) | C20—C19—H19 | 120.00 |
N1—C5—C7 | 113.3 (2) | C18—C19—H19 | 120.00 |
C4—C5—C7 | 125.1 (3) | C19—C20—H20 | 119.00 |
N1—C5—C4 | 121.6 (3) | C21—C20—H20 | 119.00 |
O2—C6—C1 | 115.6 (2) | C21—C22—H22 | 121.00 |
O1—C6—C1 | 117.9 (2) | C23—C22—H22 | 121.00 |
O1—C6—O2 | 126.5 (3) | C24—C23—H23 | 119.00 |
O3—C7—O4 | 126.4 (3) | C22—C23—H23 | 119.00 |
O3—C7—C5 | 114.9 (3) | C15—C27—H27B | 109.00 |
O4—C7—C5 | 118.8 (3) | H27A—C27—H27C | 109.00 |
N2—C8—C13 | 113.7 (2) | C15—C27—H27C | 110.00 |
N2—C8—C9 | 122.4 (3) | H27A—C27—H27B | 110.00 |
C9—C8—C13 | 123.9 (2) | C15—C27—H27A | 109.00 |
C8—C9—C10 | 118.5 (2) | H27B—C27—H27C | 110.00 |
O10—C10—C11 | 123.4 (3) | C24—C28—H28C | 109.00 |
O10—C10—C9 | 117.3 (2) | H28A—C28—H28C | 109.00 |
C9—C10—C11 | 119.3 (2) | H28B—C28—H28C | 109.00 |
C10—C11—C12 | 118.1 (3) | H28A—C28—H28B | 109.00 |
N2—C12—C11 | 122.5 (2) | C24—C28—H28A | 109.00 |
C11—C12—C14 | 123.8 (3) | C24—C28—H28B | 109.00 |
N2—C12—C14 | 113.7 (2) | ||
O3—Zn1—O1—C6 | 4.4 (3) | C26—N3—C15—C27 | 178.7 (3) |
O6—Zn1—O1—C6 | 96.58 (18) | C15—N3—C26—C25 | −179.9 (3) |
O8—Zn1—O1—C6 | −110.39 (18) | C24—N4—C25—C21 | −0.1 (5) |
N1—Zn1—O1—C6 | 1.51 (18) | C25—N4—C24—C23 | 0.3 (5) |
N2—Zn1—O1—C6 | 169.07 (17) | C25—N4—C24—C28 | −179.8 (3) |
O1—Zn1—O3—C7 | −0.9 (3) | C24—N4—C25—C26 | 178.8 (3) |
O6—Zn1—O3—C7 | −93.9 (2) | N1—C1—C2—C3 | 0.9 (4) |
O8—Zn1—O3—C7 | 114.1 (2) | N1—C1—C6—O2 | 173.5 (2) |
N1—Zn1—O3—C7 | 2.0 (2) | C6—C1—C2—C3 | −179.1 (3) |
N2—Zn1—O3—C7 | −167.4 (2) | N1—C1—C6—O1 | −5.0 (4) |
O1—Zn1—O6—C13 | 119.77 (19) | C2—C1—C6—O1 | 175.0 (3) |
O3—Zn1—O6—C13 | −88.10 (19) | C2—C1—C6—O2 | −6.6 (4) |
O8—Zn1—O6—C13 | 11.6 (3) | C1—C2—C3—C4 | −3.0 (4) |
N1—Zn1—O6—C13 | −160.63 (19) | C1—C2—C3—O5 | 176.4 (3) |
N2—Zn1—O6—C13 | 2.19 (19) | C2—C3—C4—C5 | 2.7 (4) |
O1—Zn1—O8—C14 | −120.2 (2) | O5—C3—C4—C5 | −176.7 (3) |
O3—Zn1—O8—C14 | 85.1 (2) | C3—C4—C5—C7 | 177.5 (3) |
O6—Zn1—O8—C14 | −13.1 (3) | C3—C4—C5—N1 | −0.3 (4) |
N1—Zn1—O8—C14 | 158.5 (2) | N1—C5—C7—O3 | 6.4 (4) |
N2—Zn1—O8—C14 | −3.9 (2) | N1—C5—C7—O4 | −173.9 (3) |
O1—Zn1—N1—C1 | −4.36 (18) | C4—C5—C7—O4 | 8.1 (5) |
O1—Zn1—N1—C5 | −179.5 (2) | C4—C5—C7—O3 | −171.6 (3) |
O3—Zn1—N1—C1 | 177.0 (2) | N2—C8—C9—C10 | −0.6 (4) |
O3—Zn1—N1—C5 | 2.0 (2) | C13—C8—C9—C10 | −179.2 (3) |
O6—Zn1—N1—C1 | −95.45 (19) | N2—C8—C13—O6 | −6.4 (4) |
O6—Zn1—N1—C5 | 89.5 (2) | N2—C8—C13—O7 | 174.0 (2) |
O8—Zn1—N1—C1 | 88.55 (19) | C9—C8—C13—O6 | 172.4 (3) |
O8—Zn1—N1—C5 | −86.5 (2) | C9—C8—C13—O7 | −7.3 (4) |
N2—Zn1—N1—C1 | −150.6 (2) | C8—C9—C10—O10 | 178.8 (2) |
N2—Zn1—N1—C5 | 34.3 (4) | C8—C9—C10—C11 | −1.1 (4) |
O1—Zn1—N2—C8 | −90.0 (2) | C9—C10—C11—C12 | 1.9 (4) |
O1—Zn1—N2—C12 | 98.8 (2) | O10—C10—C11—C12 | −178.0 (3) |
O3—Zn1—N2—C8 | 83.0 (2) | C10—C11—C12—C14 | 178.7 (3) |
O3—Zn1—N2—C12 | −88.3 (2) | C10—C11—C12—N2 | −1.2 (4) |
O6—Zn1—N2—C8 | −6.2 (2) | N2—C12—C14—O8 | 5.1 (4) |
O6—Zn1—N2—C12 | −177.5 (2) | C11—C12—C14—O8 | −174.8 (3) |
O8—Zn1—N2—C8 | 178.3 (2) | C11—C12—C14—O9 | 5.7 (4) |
O8—Zn1—N2—C12 | 7.01 (19) | N2—C12—C14—O9 | −174.4 (3) |
N1—Zn1—N2—C8 | 52.2 (4) | N3—C15—C16—C17 | 0.4 (4) |
N1—Zn1—N2—C12 | −119.1 (3) | C27—C15—C16—C17 | −177.7 (3) |
Zn1—O1—C6—O2 | −176.9 (2) | C15—C16—C17—C18 | −1.1 (5) |
Zn1—O1—C6—C1 | 1.3 (3) | C16—C17—C18—C19 | 179.8 (3) |
Zn1—O3—C7—O4 | 175.4 (3) | C16—C17—C18—C26 | 0.7 (5) |
Zn1—O3—C7—C5 | −4.9 (3) | C17—C18—C19—C20 | −178.7 (3) |
Zn1—O6—C13—O7 | −178.8 (2) | C26—C18—C19—C20 | 0.4 (5) |
Zn1—O6—C13—C8 | 1.5 (3) | C17—C18—C26—N3 | 0.2 (4) |
Zn1—O8—C14—O9 | −180.0 (3) | C17—C18—C26—C25 | 179.2 (3) |
Zn1—O8—C14—C12 | 0.6 (3) | C19—C18—C26—N3 | −178.9 (3) |
Zn1—N1—C1—C2 | −173.8 (2) | C19—C18—C26—C25 | 0.1 (5) |
Zn1—N1—C1—C6 | 6.2 (3) | C18—C19—C20—C21 | −0.4 (5) |
C5—N1—C1—C2 | 1.5 (4) | C19—C20—C21—C22 | 179.4 (3) |
C5—N1—C1—C6 | −178.5 (2) | C19—C20—C21—C25 | −0.2 (5) |
Zn1—N1—C5—C4 | 173.1 (2) | C20—C21—C22—C23 | −179.3 (3) |
Zn1—N1—C5—C7 | −5.0 (3) | C25—C21—C22—C23 | 0.2 (5) |
C1—N1—C5—C4 | −1.8 (4) | C20—C21—C25—N4 | 179.4 (3) |
C1—N1—C5—C7 | −179.9 (2) | C20—C21—C25—C26 | 0.6 (4) |
Zn1—N2—C8—C9 | −169.8 (2) | C22—C21—C25—N4 | −0.2 (5) |
Zn1—N2—C8—C13 | 9.0 (3) | C22—C21—C25—C26 | −179.0 (3) |
C12—N2—C8—C9 | 1.3 (4) | C21—C22—C23—C24 | 0.0 (6) |
C12—N2—C8—C13 | −179.9 (2) | C22—C23—C24—N4 | −0.2 (6) |
Zn1—N2—C12—C11 | 171.2 (2) | C22—C23—C24—C28 | 179.9 (4) |
Zn1—N2—C12—C14 | −8.7 (3) | N4—C25—C26—N3 | −0.5 (4) |
C8—N2—C12—C11 | −0.4 (4) | N4—C25—C26—C18 | −179.5 (3) |
C8—N2—C12—C14 | 179.7 (2) | C21—C25—C26—N3 | 178.4 (3) |
C15—N3—C26—C18 | −0.8 (4) | C21—C25—C26—C18 | −0.6 (5) |
C26—N3—C15—C16 | 0.5 (4) |
Cg1 is the centroid of the N1,C1–C5 ring. |
D—H···A | D—H | H···A | D···A | D—H···A |
N3—H3···N4 | 0.87 | 2.37 | 2.721 (3) | 105 |
N3—H3···O1W | 0.87 | 2.01 | 2.848 (4) | 161 |
O5—H5···O2W | 0.83 | 1.76 | 2.570 (4) | 166 |
O7—H7···O2i | 0.83 | 1.66 | 2.402 (3) | 147 |
O10—H10···O3ii | 0.83 | 1.75 | 2.562 (3) | 166 |
O1W—H1WA···O9iii | 0.83 (3) | 2.02 (4) | 2.833 (4) | 169 (4) |
O1W—H1WB···O4iv | 0.84 (4) | 2.18 (4) | 2.960 (4) | 156 (3) |
O2W—H2WA···O8v | 0.82 (4) | 1.98 (4) | 2.738 (4) | 155 (4) |
O2W—H2WB···O4vi | 0.81 (2) | 2.25 (3) | 3.046 (4) | 171 (4) |
O3W—H3WA···O4 | 0.83 (2) | 1.75 (5) | 2.530 (7) | 157 (13) |
O3W—H3WB···O2Wv | 0.82 (2) | 2.21 (4) | 2.750 (9) | 123 (3) |
C27—H27C···O3vii | 0.97 | 2.58 | 3.504 (4) | 160 |
C22—H22···Cg1viii | 0.94 | 2.76 | 3.634 (4) | 155 |
Symmetry codes: (i) −x, y−1/2, −z+1/2; (ii) −x, −y+2, −z; (iii) −x+1, −y+2, −z; (iv) −x+1, −y+1, −z; (v) −x+1, y−1/2, −z+1/2; (vi) −x+1, y+1/2, −z+1/2; (vii) x+1, y, z; (viii) x, y−1, z. |
Experimental details
Crystal data | |
Chemical formula | (C14H13N2)[Zn(C7H3NO5)(C7H4NO5)]·2.35H2O |
Mr | 680.19 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 223 |
a, b, c (Å) | 11.0687 (18), 9.7888 (14), 25.776 (4) |
β (°) | 94.160 (19) |
V (Å3) | 2785.4 (7) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.96 |
Crystal size (mm) | 0.38 × 0.15 × 0.15 |
Data collection | |
Diffractometer | Stoe IPDS diffractometer |
Absorption correction | Multi-scan (MULscanABS in PLATON; Spek, 2009) |
Tmin, Tmax | 0.972, 1.000 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 20517, 5464, 3242 |
Rint | 0.079 |
(sin θ/λ)max (Å−1) | 0.618 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.039, 0.081, 0.82 |
No. of reflections | 5464 |
No. of parameters | 437 |
No. of restraints | 12 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.39, −0.82 |
Computer programs: EXPOSE in IPDS-I (Stoe & Cie, 2000), CELL in IPDS-I (Stoe & Cie, 2000), INTEGRATE in IPDS-I (Stoe & Cie, 2000), SHELXS97 (Sheldrick, 2008), PLATON (Spek, 2009) and Mercury (Macrae et al., 2008), SHELXL97 (Sheldrick, 2008), PLATON (Spek, 2009) and publCIF (Westrip, 2010).
Cg1 is the centroid of the N1,C1–C5 ring. |
D—H···A | D—H | H···A | D···A | D—H···A |
N3—H3···N4 | 0.87 | 2.37 | 2.721 (3) | 105 |
N3—H3···O1W | 0.87 | 2.01 | 2.848 (4) | 161 |
O5—H5···O2W | 0.83 | 1.76 | 2.570 (4) | 166 |
O7—H7···O2i | 0.83 | 1.66 | 2.402 (3) | 147 |
O10—H10···O3ii | 0.83 | 1.75 | 2.562 (3) | 166 |
O1W—H1WA···O9iii | 0.83 (3) | 2.02 (4) | 2.833 (4) | 169 (4) |
O1W—H1WB···O4iv | 0.84 (4) | 2.18 (4) | 2.960 (4) | 156 (3) |
O2W—H2WA···O8v | 0.82 (4) | 1.98 (4) | 2.738 (4) | 155 (4) |
O2W—H2WB···O4vi | 0.81 (2) | 2.25 (3) | 3.046 (4) | 171 (4) |
O3W—H3WA···O4 | 0.83 (2) | 1.75 (5) | 2.530 (7) | 157 (13) |
O3W—H3WB···O2Wv | 0.82 (2) | 2.21 (4) | 2.750 (9) | 123 (3) |
C27—H27C···O3vii | 0.97 | 2.58 | 3.504 (4) | 160 |
C22—H22···Cg1viii | 0.94 | 2.76 | 3.634 (4) | 155 |
Symmetry codes: (i) −x, y−1/2, −z+1/2; (ii) −x, −y+2, −z; (iii) −x+1, −y+2, −z; (iv) −x+1, −y+1, −z; (v) −x+1, y−1/2, −z+1/2; (vi) −x+1, y+1/2, −z+1/2; (vii) x+1, y, z; (viii) x, y−1, z. |
Acknowledgements
HSE thanks the XRD Application Lab. of the CSEM, Neuchâtel, for access to the X-ray diffraction equipment.
References
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The crystal structure of some proton transfer complexes where 4-hydroxypyridine-2,6-dicarboxlic acid (hypydcH2) is the proton donor have been reported on previously (Derakhshandeh et al., 2010; Aghabozorg et al., 2007a, 2007b, 2007c, 2008a, 2008b, 2008c; Moghimi et al., 2005a, 2005b). Herein, we report on the crystal structure of the title compound, obtained by the reaction of zinc(II)nitrate, with the same proton donor (hpydcH2) and the proton acceptor 2,9-dimethyl-1,10-phenanthroline (dmp).
The title compound contains of one [Zn(hpydc)(hpydcH)]- anion, one (dmpH)+ cation and 2.35 uncoordinated water molecules (Fig. 1). A carboxylic acid proton has been transferred to an N atom of 2,9-dimethyl-1,10-phenanthroline. In the anions, the ZnII atom is six-coordinated by two N atoms (N1 and N2) that occupy the axial positions, and four O atoms (O1, O3, O6 and O8) from the carboxylate groups of the (hypydc)2– and (pydcH)– ligands in the equitorial plane, so forming a distorted octahedral geometry. The (hypydc)2- and (pydcH)- ligands are almost perpendicular to one another, with a dihedral angle of 87.75 (13) ° between the two pyridine rings, (N1,C1–C5) and (N2,C8–C12). There is a short N—H···N interaction in the cation (Table 1).
In the crystal, the anions are linked via two types of robust O—H···O hydrogen bond synthons, type (I) R22(16) and (II) R66(42), forming a two-dimensional network lieing parallel to the bc plane (Fig. 2). Intermolecular O—H···O, N—H···O, N—H···N and weak C—H···O hydrogen bonds connect these two dimensional networks to form a three-dimensional arrangement (Table 1 and Fig. 3).
Another aspect of the crystal structure, illustrated in Fig. 4, is the presence of π–π interactions involving the pyridine rings, (Cg1 = N1,C1—C5) and (Cg2 = N2,C8—C12) of the anion and the central ring (Cg3 = C18—C26) of the phenantholinium cation: centroid-centroid distances are 3.7681 (18) Å for Cg1···Cg3i [symmetry code: (i) x + 1, -y + 1/2, z + 1/2] and 3.5554 (18) Å for Cg2···Cg3ii [symmetry code: (ii) x - 1, y + 1, z]. There is also a C—H···π interaction (C22—H22···Cg1viii, see Table 1) and a C═O···π interaction present [C6═O2···Cg4iii = 3.117 (2) Å; symmetry code: (iii) x - 1, y + 1/2, -z + 1/2; Cg4 is the centroid of ring (N3,C15—C18,C26)].
The crystal structure of the title compound is isostructural to that of the nickel(II) complex, (dmpH)[Ni(hpydc)(hpydcH)].2.35 H2O (Derakhshandeh et al., 2010).