organic compounds
6-Ethyl-N-methyl-3-nitro-4-nitromethyl-4H-chromen-2-amine
aCentre for Bioinformatics, Pondicherry University, Puducherry 605 014, India, and bDepartment of Chemistry, Pondicherry University, Puducherry 605 014, India
*Correspondence e-mail: krishstrucbio@gmail.com
In the title compound, C13H15N3O5, the O and N atoms of the nitromethyl group and the methyl C atom of the ethyl group are disordered over two sets of sites with refined occupancies of 0.629 (7):0.371 (7) and 0.533 (8):0.467 (8), respectively. The dihydropyran ring has an extremely flattened conformation. An intramolecular N—H⋯O hydrogen bond occurs. In the crystal, pairs of N—H⋯O hydrogen bonds link molecules, forming inversion dimers. In addition, weak intermolecular C—H⋯O hydrogen bonds are also present.
Related literature
For the biological and pharmacological importance of 4H-chromene derivatives, see: Cai (2007, 2008); Cai et al. (2006); Gabor (1988); Brooks (1998); Hyana & Saimoto (1987); Tang et al. (2007). For related structures, see: Muthukumaran et al. (2011a,b,c); Gayathri et al. (2006); Bhaskaran et al. (2006).
Experimental
Crystal data
|
Refinement
|
Data collection: CrysAlis PRO (Oxford Diffraction, 2009); cell CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: PLATON (Spek, 2009).
Supporting information
10.1107/S1600536811053554/lh5388sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536811053554/lh5388Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536811053554/lh5388Isup3.cml
To a solution of (E)-5-ethyl-2-(2-nitrovinyl)phenol (150 mg, 0.77 mmol) in methanol (5 mL), 1,8-diazabicyclo[5.4.0]undec-7-ene (15 mg, 0.10 mmol) was added and stirred for 10 minutes at room temperature. To this solution (E) N-methyl-1-(methylthio)-2-nitroethenamine (115 mg, 0.77 mmol) was added and stirred for 8 h until completion of the reaction (TLC, hexane:ethyl acetate, 3:2, Rf = 1/2). The reaction mixture was then kept aside at 278 K in a refrigerator for 3 h to afford
of the product as a white precipitate, which was filtered. Good crystals were obtained by recrystallization of a solution of dichloromethane: hexane (9:3 v/v).H atoms were positioned geometrically (C—H = 0.93–0.98 Å. N—H = 0.86Å) and were refined using a riding model with Uiso(H) = xUeq(C,N), where x = 1.5 for methyl and 1.2 for all other atoms. The nitro and terminal carbon atom of ethyl group are disordered over two orientations, with the refined site-occupancy ratios being 0.629 (7):0.371 (7) and 0.533 (8):0.467 (8), respectively. The DFIX, SIMU, DELU and EADP commands in SHELXL (Sheldrick, 2008) were used to model the disorder.
Data collection: CrysAlis PRO (Oxford Diffraction, 2009); cell
CrysAlis PRO (Oxford Diffraction, 2009); data reduction: CrysAlis PRO (Oxford Diffraction, 2009); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: PLATON (Spek, 2009).C13H15N3O5 | Z = 2 |
Mr = 293.28 | F(000) = 308 |
Triclinic, P1 | Dx = 1.388 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 8.2538 (10) Å | Cell parameters from 1935 reflections |
b = 9.0431 (9) Å | θ = 2.7–29.1° |
c = 10.3323 (12) Å | µ = 0.11 mm−1 |
α = 73.484 (9)° | T = 293 K |
β = 71.728 (11)° | Block, colorless |
γ = 83.234 (9)° | 0.4 × 0.35 × 0.2 mm |
V = 701.75 (14) Å3 |
Oxford Diffraction Xcalibur Eos diffractometer | 2463 independent reflections |
Radiation source: fine-focus sealed tube | 1520 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.031 |
Detector resolution: 15.9821 pixels mm-1 | θmax = 25.0°, θmin = 2.7° |
ω scans | h = −9→9 |
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009) | k = −10→10 |
Tmin = 0.958, Tmax = 0.979 | l = −11→12 |
4281 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.073 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.232 | H-atom parameters constrained |
S = 1.06 | w = 1/[σ2(Fo2) + (0.1377P)2 + 0.1022P] where P = (Fo2 + 2Fc2)/3 |
2463 reflections | (Δ/σ)max < 0.001 |
205 parameters | Δρmax = 0.40 e Å−3 |
122 restraints | Δρmin = −0.34 e Å−3 |
C13H15N3O5 | γ = 83.234 (9)° |
Mr = 293.28 | V = 701.75 (14) Å3 |
Triclinic, P1 | Z = 2 |
a = 8.2538 (10) Å | Mo Kα radiation |
b = 9.0431 (9) Å | µ = 0.11 mm−1 |
c = 10.3323 (12) Å | T = 293 K |
α = 73.484 (9)° | 0.4 × 0.35 × 0.2 mm |
β = 71.728 (11)° |
Oxford Diffraction Xcalibur Eos diffractometer | 2463 independent reflections |
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009) | 1520 reflections with I > 2σ(I) |
Tmin = 0.958, Tmax = 0.979 | Rint = 0.031 |
4281 measured reflections |
R[F2 > 2σ(F2)] = 0.073 | 122 restraints |
wR(F2) = 0.232 | H-atom parameters constrained |
S = 1.06 | Δρmax = 0.40 e Å−3 |
2463 reflections | Δρmin = −0.34 e Å−3 |
205 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
O1 | 0.4139 (2) | 0.2857 (3) | 1.1942 (2) | 0.0468 (6) | |
C1 | 0.5007 (4) | 0.2700 (4) | 1.0581 (3) | 0.0401 (8) | |
C8 | 0.6569 (4) | 0.4021 (4) | 1.1982 (3) | 0.0383 (8) | |
O2 | 0.6415 (3) | 0.5176 (3) | 1.3724 (2) | 0.0569 (7) | |
O3 | 0.8792 (3) | 0.5209 (3) | 1.2039 (2) | 0.0636 (8) | |
N2 | 0.7266 (3) | 0.4819 (3) | 1.2608 (3) | 0.0435 (7) | |
C9 | 0.4856 (4) | 0.3561 (4) | 1.2598 (3) | 0.0394 (8) | |
N1 | 0.3831 (3) | 0.3738 (3) | 1.3790 (3) | 0.0490 (8) | |
H1 | 0.4224 | 0.4167 | 1.4267 | 0.059* | |
C6 | 0.6684 (4) | 0.3088 (4) | 0.9922 (3) | 0.0380 (8) | |
C2 | 0.4066 (4) | 0.2138 (4) | 0.9941 (4) | 0.0490 (9) | |
H2 | 0.2935 | 0.1877 | 1.0408 | 0.059* | |
C5 | 0.7416 (4) | 0.2899 (4) | 0.8563 (3) | 0.0489 (9) | |
H5 | 0.8551 | 0.3151 | 0.8099 | 0.059* | |
C7 | 0.7700 (4) | 0.3607 (4) | 1.0681 (3) | 0.0413 (8) | |
H7 | 0.8238 | 0.4563 | 1.0044 | 0.050* | |
C4 | 0.6519 (5) | 0.2354 (4) | 0.7888 (4) | 0.0528 (9) | |
C3 | 0.4833 (5) | 0.1970 (4) | 0.8600 (4) | 0.0548 (10) | |
H3 | 0.4209 | 0.1592 | 0.8160 | 0.066* | |
C11 | 0.9145 (4) | 0.2466 (4) | 1.0924 (4) | 0.0588 (10) | |
H11A | 0.9964 | 0.2440 | 1.0021 | 0.071* | |
H11B | 0.9726 | 0.2804 | 1.1468 | 0.071* | |
N3A | 0.8506 (10) | 0.0891 (5) | 1.1687 (9) | 0.085 (2) | 0.629 (7) |
O4A | 0.7196 (14) | 0.0755 (17) | 1.2654 (17) | 0.113 (3) | 0.629 (7) |
O5A | 0.9064 (12) | −0.0297 (9) | 1.1366 (11) | 0.169 (3) | 0.629 (7) |
N3B | 0.8580 (16) | 0.0962 (10) | 1.1944 (16) | 0.085 (2) | 0.371 (7) |
O4B | 0.717 (2) | 0.043 (3) | 1.240 (3) | 0.113 (3) | 0.371 (7) |
O5B | 0.9759 (19) | 0.0179 (16) | 1.2268 (18) | 0.169 (3) | 0.371 (7) |
C12 | 0.7376 (6) | 0.2240 (6) | 0.6386 (4) | 0.0778 (13) | |
H12A | 0.7279 | 0.3246 | 0.5751 | 0.093* | 0.533 (8) |
H12B | 0.8581 | 0.2008 | 0.6277 | 0.093* | 0.533 (8) |
H12C | 0.6550 | 0.2506 | 0.5857 | 0.093* | 0.467 (8) |
H12D | 0.8286 | 0.2970 | 0.5932 | 0.093* | 0.467 (8) |
C13A | 0.6702 (15) | 0.1062 (12) | 0.5913 (10) | 0.114 (3) | 0.533 (8) |
H13A | 0.7334 | 0.1097 | 0.4951 | 0.171* | 0.533 (8) |
H13B | 0.5517 | 0.1291 | 0.5983 | 0.171* | 0.533 (8) |
H13C | 0.6828 | 0.0050 | 0.6506 | 0.171* | 0.533 (8) |
C13B | 0.8100 (18) | 0.0627 (8) | 0.6369 (12) | 0.114 (3) | 0.467 (8) |
H13D | 0.8636 | 0.0583 | 0.5411 | 0.171* | 0.467 (8) |
H13E | 0.7197 | −0.0094 | 0.6804 | 0.171* | 0.467 (8) |
H13F | 0.8929 | 0.0369 | 0.6881 | 0.171* | 0.467 (8) |
C10 | 0.2057 (4) | 0.3261 (6) | 1.4383 (4) | 0.0722 (13) | |
H10A | 0.1380 | 0.3912 | 1.3825 | 0.108* | |
H10B | 0.1624 | 0.3350 | 1.5336 | 0.108* | |
H10C | 0.2001 | 0.2209 | 1.4376 | 0.108* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0348 (11) | 0.0592 (17) | 0.0485 (13) | −0.0089 (10) | −0.0032 (9) | −0.0247 (11) |
C1 | 0.0371 (16) | 0.041 (2) | 0.0445 (17) | 0.0043 (14) | −0.0130 (14) | −0.0158 (14) |
C8 | 0.0367 (16) | 0.039 (2) | 0.0394 (16) | −0.0034 (13) | −0.0094 (13) | −0.0109 (14) |
O2 | 0.0646 (15) | 0.0694 (19) | 0.0409 (12) | −0.0110 (13) | −0.0074 (11) | −0.0262 (12) |
O3 | 0.0457 (14) | 0.085 (2) | 0.0667 (16) | −0.0271 (13) | −0.0008 (12) | −0.0383 (15) |
N2 | 0.0472 (16) | 0.0450 (18) | 0.0393 (14) | −0.0071 (12) | −0.0081 (12) | −0.0155 (13) |
C9 | 0.0362 (16) | 0.0365 (19) | 0.0431 (17) | 0.0004 (13) | −0.0080 (14) | −0.0114 (14) |
N1 | 0.0431 (15) | 0.058 (2) | 0.0448 (15) | −0.0076 (13) | 0.0022 (12) | −0.0255 (14) |
C6 | 0.0404 (17) | 0.0360 (19) | 0.0386 (16) | 0.0007 (13) | −0.0114 (13) | −0.0126 (14) |
C2 | 0.0420 (18) | 0.050 (2) | 0.063 (2) | 0.0021 (15) | −0.0210 (16) | −0.0223 (18) |
C5 | 0.0472 (18) | 0.051 (2) | 0.0468 (19) | −0.0022 (16) | −0.0073 (15) | −0.0175 (16) |
C7 | 0.0361 (16) | 0.047 (2) | 0.0416 (17) | −0.0084 (14) | −0.0050 (13) | −0.0173 (15) |
C4 | 0.064 (2) | 0.052 (2) | 0.0476 (19) | 0.0046 (17) | −0.0212 (17) | −0.0185 (17) |
C3 | 0.066 (2) | 0.050 (2) | 0.063 (2) | 0.0010 (18) | −0.0350 (19) | −0.0208 (18) |
C11 | 0.0356 (17) | 0.080 (3) | 0.074 (2) | 0.0052 (17) | −0.0169 (16) | −0.042 (2) |
N3A | 0.075 (3) | 0.079 (3) | 0.095 (4) | 0.044 (2) | −0.033 (2) | −0.023 (2) |
O4A | 0.131 (3) | 0.045 (7) | 0.154 (7) | −0.008 (3) | −0.030 (3) | −0.021 (4) |
O5A | 0.189 (6) | 0.098 (5) | 0.222 (9) | 0.055 (5) | −0.065 (5) | −0.065 (5) |
N3B | 0.075 (3) | 0.079 (3) | 0.095 (4) | 0.044 (2) | −0.033 (2) | −0.023 (2) |
O4B | 0.131 (3) | 0.045 (7) | 0.154 (7) | −0.008 (3) | −0.030 (3) | −0.021 (4) |
O5B | 0.189 (6) | 0.098 (5) | 0.222 (9) | 0.055 (5) | −0.065 (5) | −0.065 (5) |
C12 | 0.100 (3) | 0.084 (3) | 0.056 (2) | −0.003 (3) | −0.022 (2) | −0.031 (2) |
C13A | 0.168 (10) | 0.096 (6) | 0.073 (5) | −0.015 (6) | 0.000 (5) | −0.049 (4) |
C13B | 0.168 (10) | 0.096 (6) | 0.073 (5) | −0.015 (6) | 0.000 (5) | −0.049 (4) |
C10 | 0.046 (2) | 0.092 (4) | 0.073 (3) | −0.015 (2) | 0.0122 (19) | −0.041 (2) |
O1—C9 | 1.342 (4) | C11—N3B | 1.4847 (11) |
O1—C1 | 1.403 (3) | C11—N3A | 1.4847 (11) |
C1—C6 | 1.375 (4) | C11—H11A | 0.9700 |
C1—C2 | 1.380 (4) | C11—H11B | 0.9700 |
C8—N2 | 1.366 (4) | N3A—O4A | 1.2113 (11) |
C8—C9 | 1.414 (4) | N3A—O5A | 1.2115 (11) |
C8—C7 | 1.496 (4) | N3B—O4B | 1.2114 (11) |
O2—N2 | 1.256 (3) | N3B—O5B | 1.2117 (11) |
O3—N2 | 1.256 (3) | C12—C13B | 1.5122 (11) |
C9—N1 | 1.298 (4) | C12—C13A | 1.5125 (11) |
N1—C10 | 1.463 (4) | C12—H12A | 0.9700 |
N1—H1 | 0.8600 | C12—H12B | 0.9700 |
C6—C5 | 1.395 (4) | C12—H12C | 0.9700 |
C6—C7 | 1.501 (4) | C12—H12D | 0.9700 |
C2—C3 | 1.376 (5) | C13A—H13A | 0.9600 |
C2—H2 | 0.9300 | C13A—H13B | 0.9600 |
C5—C4 | 1.372 (5) | C13A—H13C | 0.9600 |
C5—H5 | 0.9300 | C13B—H13D | 0.9600 |
C7—C11 | 1.517 (5) | C13B—H13E | 0.9600 |
C7—H7 | 0.9800 | C13B—H13F | 0.9600 |
C4—C3 | 1.387 (5) | C10—H10A | 0.9600 |
C4—C12 | 1.518 (5) | C10—H10B | 0.9600 |
C3—H3 | 0.9300 | C10—H10C | 0.9600 |
C9—O1—C1 | 120.9 (2) | O4A—N3A—O5A | 114.3 (8) |
C6—C1—C2 | 122.1 (3) | O4A—N3A—C11 | 118.5 (9) |
C6—C1—O1 | 122.2 (3) | O5A—N3A—C11 | 126.8 (8) |
C2—C1—O1 | 115.7 (3) | O4B—N3B—O5B | 118.9 (19) |
N2—C8—C9 | 120.1 (3) | O4B—N3B—C11 | 128.9 (19) |
N2—C8—C7 | 117.6 (2) | O5B—N3B—C11 | 112.1 (11) |
C9—C8—C7 | 122.2 (3) | C13B—C12—C13A | 53.2 (7) |
O3—N2—O2 | 119.8 (3) | C13B—C12—C4 | 110.9 (5) |
O3—N2—C8 | 118.7 (2) | C13A—C12—C4 | 116.9 (5) |
O2—N2—C8 | 121.5 (3) | C13B—C12—H12A | 141.0 |
N1—C9—O1 | 113.2 (3) | C13A—C12—H12A | 108.1 |
N1—C9—C8 | 126.7 (3) | C4—C12—H12A | 108.1 |
O1—C9—C8 | 120.1 (3) | C13B—C12—H12B | 59.8 |
C9—N1—C10 | 125.0 (3) | C13A—C12—H12B | 108.1 |
C9—N1—H1 | 117.5 | C4—C12—H12B | 108.1 |
C10—N1—H1 | 117.5 | H12A—C12—H12B | 107.3 |
C1—C6—C5 | 117.5 (3) | C13B—C12—H12C | 109.5 |
C1—C6—C7 | 120.6 (3) | C13A—C12—H12C | 57.4 |
C5—C6—C7 | 121.8 (3) | C4—C12—H12C | 109.5 |
C3—C2—C1 | 118.7 (3) | H12A—C12—H12C | 56.1 |
C3—C2—H2 | 120.6 | H12B—C12—H12C | 142.2 |
C1—C2—H2 | 120.6 | C13B—C12—H12D | 109.5 |
C4—C5—C6 | 122.2 (3) | C13A—C12—H12D | 133.6 |
C4—C5—H5 | 118.9 | C4—C12—H12D | 109.5 |
C6—C5—H5 | 118.9 | H12A—C12—H12D | 55.3 |
C8—C7—C6 | 111.4 (2) | H12B—C12—H12D | 53.9 |
C8—C7—C11 | 114.3 (3) | H12C—C12—H12D | 108.0 |
C6—C7—C11 | 111.6 (3) | C12—C13A—H13A | 109.5 |
C8—C7—H7 | 106.3 | C12—C13A—H13B | 109.5 |
C6—C7—H7 | 106.3 | H13A—C13A—H13B | 109.5 |
C11—C7—H7 | 106.3 | C12—C13A—H13C | 109.5 |
C5—C4—C3 | 118.2 (3) | H13A—C13A—H13C | 109.5 |
C5—C4—C12 | 119.3 (3) | H13B—C13A—H13C | 109.5 |
C3—C4—C12 | 122.5 (3) | C12—C13B—H13D | 109.5 |
C2—C3—C4 | 121.4 (3) | C12—C13B—H13E | 109.5 |
C2—C3—H3 | 119.3 | H13D—C13B—H13E | 109.5 |
C4—C3—H3 | 119.3 | C12—C13B—H13F | 109.5 |
N3B—C11—C7 | 114.4 (6) | H13D—C13B—H13F | 109.5 |
N3A—C11—C7 | 111.4 (4) | H13E—C13B—H13F | 109.5 |
N3B—C11—H11A | 117.3 | N1—C10—H10A | 109.5 |
N3A—C11—H11A | 109.3 | N1—C10—H10B | 109.5 |
C7—C11—H11A | 109.3 | H10A—C10—H10B | 109.5 |
N3B—C11—H11B | 97.5 | N1—C10—H10C | 109.5 |
N3A—C11—H11B | 109.3 | H10A—C10—H10C | 109.5 |
C7—C11—H11B | 109.3 | H10B—C10—H10C | 109.5 |
H11A—C11—H11B | 108.0 | ||
C9—O1—C1—C6 | 7.7 (5) | C1—C6—C7—C8 | −14.8 (4) |
C9—O1—C1—C2 | −172.0 (3) | C5—C6—C7—C8 | 168.7 (3) |
C9—C8—N2—O3 | 179.8 (3) | C1—C6—C7—C11 | 114.3 (3) |
C7—C8—N2—O3 | 2.4 (4) | C5—C6—C7—C11 | −62.2 (4) |
C9—C8—N2—O2 | −0.7 (5) | C6—C5—C4—C3 | −0.6 (5) |
C7—C8—N2—O2 | −178.2 (3) | C6—C5—C4—C12 | 177.5 (3) |
C1—O1—C9—N1 | 174.0 (3) | C1—C2—C3—C4 | 0.0 (5) |
C1—O1—C9—C8 | −6.3 (4) | C5—C4—C3—C2 | 0.4 (6) |
N2—C8—C9—N1 | −4.2 (5) | C12—C4—C3—C2 | −177.5 (4) |
C7—C8—C9—N1 | 173.1 (3) | C8—C7—C11—N3B | 59.4 (9) |
N2—C8—C9—O1 | 176.1 (3) | C6—C7—C11—N3B | −68.2 (9) |
C7—C8—C9—O1 | −6.6 (5) | C8—C7—C11—N3A | 72.3 (5) |
O1—C9—N1—C10 | −1.1 (5) | C6—C7—C11—N3A | −55.3 (5) |
C8—C9—N1—C10 | 179.2 (4) | N3B—C11—N3A—O4A | 65 (4) |
C2—C1—C6—C5 | 0.3 (5) | C7—C11—N3A—O4A | −41.2 (12) |
O1—C1—C6—C5 | −179.4 (3) | N3B—C11—N3A—O5A | −123 (4) |
C2—C1—C6—C7 | −176.3 (3) | C7—C11—N3A—O5A | 131.0 (10) |
O1—C1—C6—C7 | 4.0 (5) | N3A—C11—N3B—O4B | −64 (4) |
C6—C1—C2—C3 | −0.4 (5) | C7—C11—N3B—O4B | 15 (2) |
O1—C1—C2—C3 | 179.3 (3) | N3A—C11—N3B—O5B | 112 (4) |
C1—C6—C5—C4 | 0.2 (5) | C7—C11—N3B—O5B | −169.6 (13) |
C7—C6—C5—C4 | 176.8 (3) | C5—C4—C12—C13B | 96.2 (7) |
N2—C8—C7—C6 | −166.3 (3) | C3—C4—C12—C13B | −85.9 (8) |
C9—C8—C7—C6 | 16.4 (4) | C5—C4—C12—C13A | 154.5 (7) |
N2—C8—C7—C11 | 66.0 (4) | C3—C4—C12—C13A | −27.5 (8) |
C9—C8—C7—C11 | −111.3 (3) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O2 | 0.86 | 1.97 | 2.600 (3) | 129 |
N1—H1···O2i | 0.86 | 2.21 | 2.943 (4) | 143 |
C11—H11A···O3ii | 0.97 | 2.58 | 3.258 (4) | 128 |
C12—H12A···O2iii | 0.97 | 2.55 | 3.457 (5) | 156 |
Symmetry codes: (i) −x+1, −y+1, −z+3; (ii) −x+2, −y+1, −z+2; (iii) x, y, z−1. |
Experimental details
Crystal data | |
Chemical formula | C13H15N3O5 |
Mr | 293.28 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 293 |
a, b, c (Å) | 8.2538 (10), 9.0431 (9), 10.3323 (12) |
α, β, γ (°) | 73.484 (9), 71.728 (11), 83.234 (9) |
V (Å3) | 701.75 (14) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.11 |
Crystal size (mm) | 0.4 × 0.35 × 0.2 |
Data collection | |
Diffractometer | Oxford Diffraction Xcalibur Eos diffractometer |
Absorption correction | Multi-scan (CrysAlis PRO; Oxford Diffraction, 2009) |
Tmin, Tmax | 0.958, 0.979 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 4281, 2463, 1520 |
Rint | 0.031 |
(sin θ/λ)max (Å−1) | 0.595 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.073, 0.232, 1.06 |
No. of reflections | 2463 |
No. of parameters | 205 |
No. of restraints | 122 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.40, −0.34 |
Computer programs: CrysAlis PRO (Oxford Diffraction, 2009), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 for Windows (Farrugia, 1997), PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O2 | 0.86 | 1.97 | 2.600 (3) | 129 |
N1—H1···O2i | 0.86 | 2.21 | 2.943 (4) | 143 |
C11—H11A···O3ii | 0.97 | 2.58 | 3.258 (4) | 128 |
C12—H12A···O2iii | 0.97 | 2.55 | 3.457 (5) | 156 |
Symmetry codes: (i) −x+1, −y+1, −z+3; (ii) −x+2, −y+1, −z+2; (iii) x, y, z−1. |
Footnotes
‡Additional correspondence author, e-mail: hspr@yahoo.com.
Acknowledgements
JM thanks the Council for Scientific and Industrial Research (CSIR) for a Senior Research Fellowship (SRF). RK thanks the Centre for Bioinformatics (funded by the Department of Biotechnology and Department of Information Technology, New Delhi, India), Pondicherry University, for providing the computational facilities to carry out this research work. AP thanks Pondicherry University for a fellowship. HSPR thanks the UGC (University Grant Commission) for the Special Assistance Programme (SAP) and the Department of Science and Technology (DST) for the Fund for Improvement of Science and Technology Infrastructure in Universities and Higher Educational Institutions (FIST).
References
Bhaskaran, S., Velmurugan, D., Ravikumar, K., Geetha, K. & Surya Prakash Rao, H. (2006). Acta Cryst. E62, o188–o190. Web of Science CSD CrossRef IUCr Journals Google Scholar
Brooks, G. T. (1998). Pestic. Sci. 22, 41–50. CrossRef Web of Science Google Scholar
Cai, S. X. (2007). Recent Patents Anticancer Drug Discov. 2, 79–101. Google Scholar
Cai, S. X. (2008). Bioorg. Med. Chem. Lett. 18, 603–607. Web of Science PubMed Google Scholar
Cai, S. X., Drewe, J. & Kasibhatla, S. (2006). Curr. Med. Chem. 13, 2627–2644. Web of Science PubMed CAS Google Scholar
Farrugia, L. J. (1997). J. Appl. Cryst. 30, 565. CrossRef IUCr Journals Google Scholar
Gabor, M. (1988). The Pharmacology of Benzopyrone Derivatives and Related Compounds, pp. 91–126. Budapest: Akademiai Kiado. Google Scholar
Gayathri, D., Velmurugan, D., Ravikumar, K., Geetha, K. & Surya Prakash Rao, H. (2006). Acta Cryst. E62, o1961–o1963. Web of Science CSD CrossRef IUCr Journals Google Scholar
Hyana, T. & Saimoto, H. (1987). Jpn Patent JP 621 812 768. Google Scholar
Muthukumaran, J., Parthiban, A., Kannan, M., Rao, H. S. P. & Krishna, R. (2011a). Acta Cryst. E67, o898–o899. Web of Science CSD CrossRef CAS IUCr Journals Google Scholar
Muthukumaran, J., Parthiban, A., Manivel, P., Rao, H. S. P. & Krishna, R. (2011b). Acta Cryst. E67, o1276–o1277. Web of Science CSD CrossRef CAS IUCr Journals Google Scholar
Muthukumaran, J., Parthiban, A., Rao, H. S. P. & Krishna, R. (2011c). J. Chem. Crystallogr. 41, 1927–1934. Web of Science CSD CrossRef CAS Google Scholar
Oxford Diffraction (2009). CrysAlis PRO. Oxford Diffraction Ltd, Yarnton, England. Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Spek, A. L. (2009). Acta Cryst. D65, 148–155. Web of Science CrossRef CAS IUCr Journals Google Scholar
Tang, Q.-G., Wu, W.-Y., He, W., Sun, H.-S. & Guo, C. (2007). Acta Cryst. E63, o1437–o1438. Web of Science CSD CrossRef CAS IUCr Journals Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
The 4H-chromene moiety frequently appears as a main structural component in various biologically important compounds. They exhibit the various pharmacological properties such as anti-coagulant, anti-viral, anti-fungal, anti-inflammatory, anti-diabetic and anti-cancer activity (Cai, 2008; Cai, 2007; Cai et al., 2006; Gabor et al., 1988; Brooks, 1998; Hyana & Saimoto, 1987; Tang et al., 2007). Considering the growing medicinal importance of these derivatives, an X-ray crystallographic study on the title compound was carried out. In the molecular structure of the title compound (I) (Fig. 1) the O and N atoms of the nitromethyl group and the methyl C atom of the ethyl group are disordered over two sets of sites with refined occupancies of 0.629 (7):0.371 (7) and 0.533 (8):0.467 (8), respectively. Some crystal structures of related 4H-chromene derivatives have already been published e.g. N-methyl-3-nitro-4-(nitromethyl)-4H-chromen-2-amine (Muthukumaran et al., 2011c), 6,8-dichloro-N-methyl-3-nitro-4-nitro-methyl-4H-chromen-2-amine (Muthukumaran et al., 2011a), 6-methoxy-N-methyl-3-nitro-4-nitromethyl-4H-chromen-2-amine (Muthukumaran et al., 2011b), N-benzyl-N-[4-methylsulfanyl)-3-nitro-4H-chromen-2-yl] amine (Bhaskaran et al., 2006) and N,6-dimethyl-4-(methylsulfanyl)-3-nitro-4H-chromen-2-amine (Gayathri et al., 2006). In the crystal, N—H···O hydrogen bonds form centrosymmetric dimers (Fig .2). In addition, there are weak intermolecular C—H···O hydrogen bonds.