organic compounds
(Z)-Methyl 3-(2,4-dichlorophenyl)-3-hydroxyacrylate
aInstitute of Medicinal Biotechnology, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing 100050, People's Republic of China
*Correspondence e-mail: hongzhaoupr@yahoo.com
The molecular structure of the title compound, C10H8Cl2O3, exists in a cis-enol form, which is stabilized by a strong intramolecular O—H⋯O hydrogen bond. In the crystal, C—H⋯O interactions generate zigzag chains along the c axis which are, in turn, linked by further C—H⋯O interactions into sheets parallel to (100).
Related literature
For the synthesis of the title compound, see: Wu et al. (1997). For related structures, see: Mei & Huang (2007); Zheng, Fan et al. (2007); Zheng, Zheng et al. (2007). For the coordination properties of similar compounds, see: Nakamoto et al. (1970); Ma et al. (1999); Yoshida et al.(2005).
Experimental
Crystal data
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Data collection
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Data collection: CrystalClear (Rigaku, 2005); cell CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL/PC (Sheldrick, 2008); software used to prepare material for publication: SHELXTL/PC.
Supporting information
10.1107/S1600536811051014/lr2037sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536811051014/lr2037Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536811051014/lr2037Isup3.cml
The title compound was synthesized according to the literature procedure of Wu et al. (1997).Single crystals suitable for X-ray diffraction were obtained by slow evaporation of an ethanol solution at room temperature.
All H atoms were detected in a difference map, but all other H-atoms were placed in calculated positions and refined using a riding motion approximation, with C—H=0.93–0.96 Å, with Uiso(H)=1.2 or 1.5Ueq(C); O—H=0.82 Å, with Uiso(H)=1.5Ueq(O).
Data collection: CrystalClear (Rigaku, 2005); cell
CrystalClear (Rigaku, 2005); data reduction: CrystalClear (Rigaku, 2005); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL/PC (Sheldrick, 2008); software used to prepare material for publication: SHELXTL/PC (Sheldrick, 2008).C10H8Cl2O3 | F(000) = 504 |
Mr = 247.06 | Dx = 1.562 Mg m−3 |
Monoclinic, Cc | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: C -2yc | Cell parameters from 5046 reflections |
a = 15.889 (3) Å | θ = 3.3–27.0° |
b = 3.8242 (8) Å | µ = 0.60 mm−1 |
c = 18.204 (4) Å | T = 294 K |
β = 108.18 (3)° | Prism, colorless |
V = 1050.9 (4) Å3 | 0.25 × 0.20 × 0.15 mm |
Z = 4 |
Rigaku SCXmini diffractometer | 2170 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.030 |
Graphite monochromator | θmax = 27.5°, θmin = 4.1° |
Detector resolution: 13.6612 pixels mm-1 | h = −20→20 |
CCD_Profile_fitting scans | k = −4→4 |
5011 measured reflections | l = −23→23 |
2371 independent reflections |
Refinement on F2 | Hydrogen site location: inferred from neighbouring sites |
Least-squares matrix: full | H-atom parameters constrained |
R[F2 > 2σ(F2)] = 0.034 | w = 1/[σ2(Fo2) + (0.0413P)2 + 0.0839P] where P = (Fo2 + 2Fc2)/3 |
wR(F2) = 0.086 | (Δ/σ)max < 0.001 |
S = 1.07 | Δρmax = 0.17 e Å−3 |
2371 reflections | Δρmin = −0.18 e Å−3 |
139 parameters | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
2 restraints | Extinction coefficient: 0.0193 (14) |
Primary atom site location: structure-invariant direct methods | Absolute structure: Flack (1983), 1177 Friedel pairs |
Secondary atom site location: difference Fourier map | Absolute structure parameter: 0.07 (6) |
C10H8Cl2O3 | V = 1050.9 (4) Å3 |
Mr = 247.06 | Z = 4 |
Monoclinic, Cc | Mo Kα radiation |
a = 15.889 (3) Å | µ = 0.60 mm−1 |
b = 3.8242 (8) Å | T = 294 K |
c = 18.204 (4) Å | 0.25 × 0.20 × 0.15 mm |
β = 108.18 (3)° |
Rigaku SCXmini diffractometer | 2170 reflections with I > 2σ(I) |
5011 measured reflections | Rint = 0.030 |
2371 independent reflections |
R[F2 > 2σ(F2)] = 0.034 | H-atom parameters constrained |
wR(F2) = 0.086 | Δρmax = 0.17 e Å−3 |
S = 1.07 | Δρmin = −0.18 e Å−3 |
2371 reflections | Absolute structure: Flack (1983), 1177 Friedel pairs |
139 parameters | Absolute structure parameter: 0.07 (6) |
2 restraints |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
C1 | 0.58573 (13) | 0.7958 (6) | 0.44452 (12) | 0.0381 (5) | |
C2 | 0.53832 (13) | 0.7161 (6) | 0.36792 (12) | 0.0392 (5) | |
C3 | 0.57482 (16) | 0.7526 (7) | 0.30884 (13) | 0.0439 (5) | |
H3 | 0.5423 | 0.6944 | 0.2583 | 0.053* | |
C4 | 0.65998 (16) | 0.8762 (6) | 0.32574 (14) | 0.0478 (5) | |
C5 | 0.70941 (16) | 0.9602 (7) | 0.40023 (15) | 0.0520 (6) | |
H5 | 0.7669 | 1.0447 | 0.4109 | 0.062* | |
C6 | 0.67267 (16) | 0.9175 (7) | 0.45842 (14) | 0.0495 (6) | |
H6 | 0.7065 | 0.9709 | 0.5088 | 0.059* | |
C7 | 0.55234 (15) | 0.7569 (6) | 0.51099 (12) | 0.0424 (5) | |
C8 | 0.47153 (15) | 0.8564 (6) | 0.51265 (13) | 0.0424 (5) | |
H8 | 0.4315 | 0.9548 | 0.4689 | 0.051* | |
C9 | 0.44659 (15) | 0.8113 (7) | 0.58190 (13) | 0.0441 (5) | |
C10 | 0.3367 (2) | 0.8937 (8) | 0.64204 (16) | 0.0612 (7) | |
H10A | 0.3348 | 0.6501 | 0.6542 | 0.092* | |
H10B | 0.2787 | 0.9934 | 0.6319 | 0.092* | |
H10C | 0.3776 | 1.0126 | 0.6849 | 0.092* | |
Cl1 | 0.43104 (3) | 0.55059 (16) | 0.34217 (3) | 0.05160 (19) | |
Cl2 | 0.70467 (4) | 0.9249 (2) | 0.25046 (4) | 0.0757 (3) | |
O1 | 0.61264 (12) | 0.6173 (6) | 0.57216 (10) | 0.0629 (5) | |
H1 | 0.5931 | 0.6120 | 0.6088 | 0.094* | |
O2 | 0.49301 (12) | 0.6776 (6) | 0.64092 (9) | 0.0620 (5) | |
O3 | 0.36513 (11) | 0.9310 (5) | 0.57450 (9) | 0.0521 (4) |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0333 (10) | 0.0443 (11) | 0.0353 (10) | −0.0018 (9) | 0.0086 (8) | −0.0022 (8) |
C2 | 0.0305 (9) | 0.0449 (12) | 0.0401 (11) | −0.0029 (8) | 0.0081 (8) | −0.0011 (9) |
C3 | 0.0384 (10) | 0.0573 (13) | 0.0350 (12) | −0.0029 (10) | 0.0103 (10) | −0.0052 (10) |
C4 | 0.0450 (12) | 0.0598 (15) | 0.0441 (12) | 0.0013 (11) | 0.0218 (10) | 0.0021 (11) |
C5 | 0.0355 (11) | 0.0657 (15) | 0.0541 (14) | −0.0083 (10) | 0.0130 (11) | −0.0040 (12) |
C6 | 0.0368 (12) | 0.0687 (15) | 0.0386 (12) | −0.0056 (11) | 0.0056 (10) | −0.0073 (10) |
C7 | 0.0412 (11) | 0.0494 (12) | 0.0329 (11) | −0.0003 (9) | 0.0062 (9) | −0.0009 (9) |
C8 | 0.0390 (11) | 0.0525 (13) | 0.0349 (11) | 0.0029 (9) | 0.0104 (9) | 0.0063 (10) |
C9 | 0.0423 (12) | 0.0534 (13) | 0.0366 (11) | 0.0007 (10) | 0.0124 (10) | 0.0003 (10) |
C10 | 0.0577 (15) | 0.083 (2) | 0.0505 (15) | 0.0069 (14) | 0.0281 (13) | 0.0036 (13) |
Cl1 | 0.0372 (3) | 0.0734 (4) | 0.0422 (3) | −0.0139 (3) | 0.0093 (2) | −0.0054 (3) |
Cl2 | 0.0592 (4) | 0.1199 (7) | 0.0596 (4) | −0.0099 (5) | 0.0351 (4) | 0.0000 (5) |
O1 | 0.0466 (9) | 0.1045 (15) | 0.0347 (9) | 0.0182 (10) | 0.0085 (7) | 0.0137 (9) |
O2 | 0.0507 (10) | 0.0981 (14) | 0.0363 (9) | 0.0163 (10) | 0.0124 (8) | 0.0170 (9) |
O3 | 0.0434 (8) | 0.0738 (12) | 0.0412 (9) | 0.0096 (8) | 0.0164 (7) | 0.0078 (8) |
C1—C2 | 1.396 (3) | C7—O1 | 1.333 (3) |
C1—C6 | 1.404 (3) | C7—C8 | 1.349 (3) |
C1—C7 | 1.472 (3) | C8—C9 | 1.445 (3) |
C2—C3 | 1.379 (3) | C8—H8 | 0.9300 |
C2—Cl1 | 1.740 (2) | C9—O2 | 1.210 (3) |
C3—C4 | 1.375 (3) | C9—O3 | 1.340 (3) |
C3—H3 | 0.9300 | C10—O3 | 1.443 (3) |
C4—C5 | 1.376 (4) | C10—H10A | 0.9600 |
C4—Cl2 | 1.739 (2) | C10—H10B | 0.9600 |
C5—C6 | 1.370 (3) | C10—H10C | 0.9600 |
C5—H5 | 0.9300 | O1—H1 | 0.8200 |
C6—H6 | 0.9300 | ||
C2—C1—C6 | 116.5 (2) | O1—C7—C8 | 122.4 (2) |
C2—C1—C7 | 125.31 (18) | O1—C7—C1 | 112.18 (19) |
C6—C1—C7 | 118.17 (19) | C8—C7—C1 | 125.4 (2) |
C3—C2—C1 | 121.98 (19) | C7—C8—C9 | 120.5 (2) |
C3—C2—Cl1 | 116.21 (16) | C7—C8—H8 | 119.7 |
C1—C2—Cl1 | 121.77 (16) | C9—C8—H8 | 119.7 |
C4—C3—C2 | 119.0 (2) | O2—C9—O3 | 122.4 (2) |
C4—C3—H3 | 120.5 | O2—C9—C8 | 124.6 (2) |
C2—C3—H3 | 120.5 | O3—C9—C8 | 113.00 (19) |
C3—C4—C5 | 121.3 (2) | O3—C10—H10A | 109.5 |
C3—C4—Cl2 | 118.42 (19) | O3—C10—H10B | 109.5 |
C5—C4—Cl2 | 120.24 (19) | H10A—C10—H10B | 109.5 |
C6—C5—C4 | 119.0 (2) | O3—C10—H10C | 109.5 |
C6—C5—H5 | 120.5 | H10A—C10—H10C | 109.5 |
C4—C5—H5 | 120.5 | H10B—C10—H10C | 109.5 |
C5—C6—C1 | 122.2 (2) | C7—O1—H1 | 109.5 |
C5—C6—H6 | 118.9 | C9—O3—C10 | 115.47 (19) |
C1—C6—H6 | 118.9 | ||
C6—C1—C2—C3 | 0.4 (4) | C7—C1—C6—C5 | 179.7 (2) |
C7—C1—C2—C3 | −178.6 (2) | C2—C1—C7—O1 | 136.9 (2) |
C6—C1—C2—Cl1 | 178.08 (18) | C6—C1—C7—O1 | −42.0 (3) |
C7—C1—C2—Cl1 | −0.9 (3) | C2—C1—C7—C8 | −44.8 (3) |
C1—C2—C3—C4 | −1.0 (4) | C6—C1—C7—C8 | 136.3 (3) |
Cl1—C2—C3—C4 | −178.9 (2) | O1—C7—C8—C9 | −0.6 (4) |
C2—C3—C4—C5 | 0.7 (4) | C1—C7—C8—C9 | −178.8 (2) |
C2—C3—C4—Cl2 | −179.34 (19) | C7—C8—C9—O2 | −2.1 (4) |
C3—C4—C5—C6 | 0.3 (4) | C7—C8—C9—O3 | 178.5 (2) |
Cl2—C4—C5—C6 | −179.7 (2) | O2—C9—O3—C10 | 0.7 (4) |
C4—C5—C6—C1 | −1.0 (4) | C8—C9—O3—C10 | −179.9 (2) |
C2—C1—C6—C5 | 0.7 (4) |
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1···O2 | 0.82 | 1.87 | 2.592 (3) | 146 |
C3—H3···O2i | 0.93 | 2.48 | 3.356 (3) | 157 |
C10—H10B···O1ii | 0.96 | 2.57 | 3.492 (3) | 162 |
Symmetry codes: (i) x, −y+1, z−1/2; (ii) x−1/2, y+1/2, z. |
Experimental details
Crystal data | |
Chemical formula | C10H8Cl2O3 |
Mr | 247.06 |
Crystal system, space group | Monoclinic, Cc |
Temperature (K) | 294 |
a, b, c (Å) | 15.889 (3), 3.8242 (8), 18.204 (4) |
β (°) | 108.18 (3) |
V (Å3) | 1050.9 (4) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.60 |
Crystal size (mm) | 0.25 × 0.20 × 0.15 |
Data collection | |
Diffractometer | Rigaku SCXmini diffractometer |
Absorption correction | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 5011, 2371, 2170 |
Rint | 0.030 |
(sin θ/λ)max (Å−1) | 0.649 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.034, 0.086, 1.07 |
No. of reflections | 2371 |
No. of parameters | 139 |
No. of restraints | 2 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.17, −0.18 |
Absolute structure | Flack (1983), 1177 Friedel pairs |
Absolute structure parameter | 0.07 (6) |
Computer programs: CrystalClear (Rigaku, 2005), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL/PC (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1···O2 | 0.82 | 1.87 | 2.592 (3) | 145.6 |
C3—H3···O2i | 0.93 | 2.48 | 3.356 (3) | 156.5 |
C10—H10B···O1ii | 0.96 | 2.57 | 3.492 (3) | 162.4 |
Symmetry codes: (i) x, −y+1, z−1/2; (ii) x−1/2, y+1/2, z. |
Acknowledgements
This work was supported by the National Natural Science Foundation (81072577).
References
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1,3-Diketones are versatile intermediates for the synthesis of some palladium(II) and platinum(II) compounds (Nakamoto et al., 1970) and other coordination compounds (Ma et al., 1999; Yoshida et al., 2005). We present here the structure characterization of (Z)-methyl 3-(2,4-dichlorophenyl)-3-hydroxyacrylate.
The molecular structure (Fig.1) exists in a cis-enol form which is stabilized by a strong intramolecular O1—H1···O2 hydrogen bond. The crystal structure (Fig.2) is stabilized by intermolecular C—H···O interactions (Table 1) . The C3—H3···O2 interactions generated zigzag chains along the c axis which in turn are linked by C10—H10B···O1 interactions giving sheets parallel to (100).