metal-organic compounds
catena-Poly[zinc-tris(μ-dimethylcarbamato-κ2O:O′)-zinc-μ-(2-phenylbenzimidazolido-κ2N:N′]
aPO Box 5800, MS 1411, Sandia National Laboratories, Albuquerque, NM 87185, USA, and bPO Box 5800, MS 1415, Sandia National Laboratories, Albuquerque, NM 87185, USA
*Correspondence e-mail: marodri@sandia.gov
The 2(C13H9N2)(C3H6NO2)3]n, displays a long chiral chain. This is composed of zinc-dimer clusters capped by dimethylcarbamate ligands, which lie on crystallographic twofold rotation axes and are polymerically linked in one dimension by 2-phenylbenzimidadole (2–PBImi) organic ligands. The two Zn2+ ions defining the dimetal cluster are crystallographically independent, but display very similar coordination modes and tetrahedral geometry. As such, each Zn2+ ion is coordinated on one side by the N-donor imidazole linker, while the other three available coordination sites are fully occupied by the O atoms from the capping dimethylcarbamates. The of the chain extends along the c axis, generating a rather long 52.470 (11) Å cell axis. Interestingly, the chiral material crystallizes from completely achiral precursors. A twofold axis and 31 screw axis serve to generate the long asymmetric unit.
of the title compound, [ZnRelated literature
For the structure of another zinc–adeninate compound, see: An et al. (2009). This structure, formed with adenine, contains a similar but not identical ligand as that of the 2-PBImi molecule. Interestingly, this Zn-adeninate structure also displays the presence of dimethylcarbamate, but in the case of the zinc-adeninate it is not a bridging molecule between Zn2+ cations, but is terminally tethered to the Zn2+ ions. The dimethylcarbamate capping molecules formed in situ during the synthesis; there is precedence for such in situ reactions (An et al. 2009; Dell'Amico et al. 2003).
Experimental
Crystal data
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Data collection: SMART (Bruker, 2007); cell SAINT (Bruker, 2007); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: XSHELL (Bruker, 2007) and Mercury (Macrae et al., 2008); software used to prepare material for publication: SHELXTL.
Supporting information
10.1107/S1600536811053177/nk2124sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536811053177/nk2124Isup2.hkl
The reaction mixture containing Zn(CH3COO2)2.2H2O (0.008 g, 0.0436 mmol) and 2–PBImi (2-phenylbenzimidazole, 0.066 g, 0.3398 mmol) in 3 mL of N,N'-dimethylformamide (DMF) was placed in a convection oven at 115° C for 72 h inside capped scintillation vials. The capped vials were removed from the oven, and allowed to stand at room temperature over a period of approximately two weeks, after which time pale yellow block-shaped crystals formed.
Hydrogen positions were derived and refined using the riding model within the SHELXTL and XSHELL software. Hydrogen atoms were fixed at 0.93 Å and 0.96 Å for aromatic and methyl type C—H bonds, respectively. The Flack (1983) parameter was calculated using 1754 Friedel pairs. The fraction of Friedel pairs measured was approximately 0.67.
Data collection: SMART (Bruker, 2007); cell
SAINT (Bruker, 2007); data reduction: SAINT (Bruker, 2007); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: XSHELL (Bruker, 2007) and Mercury (Macrae et al., 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).[Zn2(C13H9N2)(C3H6NO2)3] | Dx = 1.574 Mg m−3 |
Mr = 588.23 | Mo Kα radiation, λ = 0.71073 Å |
Trigonal, P3121 | Cell parameters from 200 reflections |
Hall symbol: P 31 2" | θ = 1–25.0° |
a = 9.0521 (13) Å | µ = 1.98 mm−1 |
c = 52.470 (11) Å | T = 188 K |
V = 3723.4 (11) Å3 | Prism, colourless |
Z = 6 | 0.20 × 0.19 × 0.15 mm |
F(000) = 1812 |
Bruker APEX CCD diffractometer | 4386 independent reflections |
Radiation source: fine-focus sealed tube | 4132 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.044 |
ϕ and ω scans | θmax = 25.0°, θmin = 2.3° |
Absorption correction: numerical (SADABS; Sheldrick, 1996) | h = −10→10 |
Tmin = 0.681, Tmax = 0.742 | k = −10→10 |
26966 measured reflections | l = −62→62 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.029 | H-atom parameters constrained |
wR(F2) = 0.059 | w = 1/[σ2(Fo2) + (0.0139P)2 + 2.9151P] where P = (Fo2 + 2Fc2)/3 |
S = 1.09 | (Δ/σ)max = 0.001 |
4386 reflections | Δρmax = 0.25 e Å−3 |
333 parameters | Δρmin = −0.24 e Å−3 |
0 restraints | Absolute structure: Flack (1983), 1754 Friedel pairs |
Primary atom site location: structure-invariant direct methods | Absolute structure parameter: 0.011 (12) |
[Zn2(C13H9N2)(C3H6NO2)3] | Z = 6 |
Mr = 588.23 | Mo Kα radiation |
Trigonal, P3121 | µ = 1.98 mm−1 |
a = 9.0521 (13) Å | T = 188 K |
c = 52.470 (11) Å | 0.20 × 0.19 × 0.15 mm |
V = 3723.4 (11) Å3 |
Bruker APEX CCD diffractometer | 4386 independent reflections |
Absorption correction: numerical (SADABS; Sheldrick, 1996) | 4132 reflections with I > 2σ(I) |
Tmin = 0.681, Tmax = 0.742 | Rint = 0.044 |
26966 measured reflections |
R[F2 > 2σ(F2)] = 0.029 | H-atom parameters constrained |
wR(F2) = 0.059 | Δρmax = 0.25 e Å−3 |
S = 1.09 | Δρmin = −0.24 e Å−3 |
4386 reflections | Absolute structure: Flack (1983), 1754 Friedel pairs |
333 parameters | Absolute structure parameter: 0.011 (12) |
0 restraints |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Zn1 | 0.61691 (5) | 0.56462 (5) | 0.031021 (7) | 0.02259 (10) | |
Zn2 | 0.88114 (5) | 0.62957 (5) | 0.139747 (7) | 0.02319 (10) | |
O1 | 0.5750 (3) | 0.3622 (3) | 0.01178 (4) | 0.0358 (6) | |
O2 | 0.8274 (3) | 0.7528 (3) | 0.01830 (4) | 0.0354 (6) | |
O3 | 0.5961 (3) | 0.4199 (3) | −0.03014 (4) | 0.0338 (6) | |
O4 | 0.7517 (3) | 0.4560 (3) | 0.16515 (4) | 0.0436 (7) | |
O5 | 0.9058 (3) | 0.5436 (3) | 0.20106 (4) | 0.0392 (7) | |
O6 | 0.8978 (4) | 0.8375 (3) | 0.15205 (5) | 0.0457 (8) | |
N1 | 0.6497 (3) | 0.5170 (3) | 0.06693 (4) | 0.0211 (6) | |
N2 | 0.7528 (3) | 0.5425 (3) | 0.10704 (5) | 0.0213 (6) | |
N3 | 0.5940 (4) | 0.1848 (4) | −0.01588 (5) | 0.0345 (8) | |
N4 | 1.0043 (5) | 1.0043 (5) | 0.0000 | 0.0365 (11) | |
N5 | 0.6591 (4) | 0.2963 (4) | 0.20013 (5) | 0.0329 (7) | |
N6 | 1.0000 | 1.1032 (5) | 0.1667 | 0.0411 (12) | |
C1 | 0.7521 (5) | 0.8882 (5) | 0.07206 (7) | 0.0370 (9) | |
H1 | 0.6428 | 0.8215 | 0.0655 | 0.042 (11)* | |
C2 | 0.8316 (6) | 1.0654 (5) | 0.07046 (8) | 0.0474 (11) | |
H2 | 0.7766 | 1.1172 | 0.0627 | 0.042 (10)* | |
C3 | 0.9932 (6) | 1.1629 (5) | 0.08049 (9) | 0.0562 (12) | |
H3 | 1.0462 | 1.2813 | 0.0798 | 0.051 (11)* | |
C4 | 1.0773 (6) | 1.0865 (5) | 0.09152 (7) | 0.0464 (11) | |
H4 | 1.1870 | 1.1536 | 0.0979 | 0.053 (13)* | |
C5 | 0.9985 (5) | 0.9104 (5) | 0.09305 (6) | 0.0338 (9) | |
H5 | 1.0550 | 0.8595 | 0.1005 | 0.029 (10)* | |
C6 | 0.8346 (5) | 0.8100 (4) | 0.08340 (6) | 0.0252 (7) | |
C7 | 0.7473 (4) | 0.6227 (4) | 0.08569 (6) | 0.0220 (7) | |
C8 | 0.6498 (4) | 0.3696 (4) | 0.10177 (6) | 0.0229 (7) | |
C9 | 0.6048 (5) | 0.2254 (5) | 0.11655 (6) | 0.0317 (8) | |
H9 | 0.6466 | 0.2351 | 0.1330 | 0.055 (12)* | |
C10 | 0.4971 (5) | 0.0683 (5) | 0.10609 (7) | 0.0403 (10) | |
H10 | 0.4649 | −0.0295 | 0.1157 | 0.041 (11)* | |
C11 | 0.4348 (5) | 0.0531 (5) | 0.08119 (7) | 0.0391 (9) | |
H11 | 0.3630 | −0.0549 | 0.0745 | 0.030 (9)* | |
C12 | 0.4772 (5) | 0.1935 (4) | 0.06647 (7) | 0.0320 (9) | |
H12 | 0.4346 | 0.1824 | 0.0500 | 0.030 (9)* | |
C13 | 0.5861 (4) | 0.3535 (4) | 0.07689 (6) | 0.0240 (7) | |
C14 | 0.8556 (5) | 0.8556 (5) | 0.0000 | 0.0238 (11) | |
C15 | 1.1260 (5) | 1.0518 (6) | 0.02054 (7) | 0.0562 (13) | |
H15A | 1.0726 | 0.9779 | 0.0349 | 0.084* | |
H15B | 1.1649 | 1.1677 | 0.0254 | 0.084* | |
H15C | 1.2213 | 1.0412 | 0.0150 | 0.084* | |
C16 | 0.5881 (4) | 0.3284 (4) | −0.01132 (6) | 0.0274 (8) | |
C17 | 0.5966 (6) | 0.1272 (6) | −0.04163 (7) | 0.0547 (13) | |
H17A | 0.5995 | 0.2086 | −0.0536 | 0.082* | |
H17B | 0.4961 | 0.0186 | −0.0444 | 0.082* | |
H17C | 0.6960 | 0.1162 | −0.0438 | 0.082* | |
C18 | 0.5903 (7) | 0.0760 (6) | 0.00490 (8) | 0.0587 (13) | |
H18A | 0.6551 | 0.1457 | 0.0190 | 0.088* | |
H18B | 0.6388 | 0.0086 | −0.0008 | 0.088* | |
H18C | 0.4744 | 0.0021 | 0.0101 | 0.088* | |
C19 | 0.7772 (4) | 0.4385 (4) | 0.18828 (6) | 0.0234 (7) | |
C20 | 0.5019 (5) | 0.1739 (6) | 0.18801 (8) | 0.0565 (13) | |
H20A | 0.4878 | 0.2209 | 0.1724 | 0.085* | |
H20B | 0.4078 | 0.1475 | 0.1992 | 0.085* | |
H20C | 0.5053 | 0.0717 | 0.1844 | 0.085* | |
C21 | 0.6793 (6) | 0.2625 (6) | 0.22652 (8) | 0.0561 (12) | |
H21A | 0.7903 | 0.3467 | 0.2324 | 0.084* | |
H21B | 0.6671 | 0.1512 | 0.2279 | 0.084* | |
H21C | 0.5936 | 0.2672 | 0.2367 | 0.084* | |
C22 | 1.0000 | 0.9526 (5) | 0.1667 | 0.0290 (12) | |
C23 | 0.8890 (7) | 1.1336 (6) | 0.15050 (9) | 0.0641 (14) | |
H23A | 0.8378 | 1.0447 | 0.1380 | 0.096* | |
H23B | 0.9541 | 1.2417 | 0.1421 | 0.096* | |
H23C | 0.8013 | 1.1346 | 0.1607 | 0.096* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Zn1 | 0.0257 (2) | 0.0255 (2) | 0.01562 (18) | 0.01208 (19) | −0.00268 (16) | 0.00245 (17) |
Zn2 | 0.0258 (2) | 0.0255 (2) | 0.01727 (18) | 0.01204 (18) | −0.00601 (17) | −0.00255 (17) |
O1 | 0.0619 (18) | 0.0346 (15) | 0.0162 (12) | 0.0280 (14) | −0.0006 (12) | −0.0010 (11) |
O2 | 0.0279 (14) | 0.0389 (16) | 0.0295 (13) | 0.0093 (13) | 0.0012 (11) | 0.0153 (12) |
O3 | 0.0531 (18) | 0.0337 (14) | 0.0236 (13) | 0.0285 (13) | 0.0013 (12) | 0.0060 (11) |
O4 | 0.0392 (16) | 0.0460 (17) | 0.0177 (13) | 0.0003 (13) | −0.0042 (11) | 0.0034 (12) |
O5 | 0.0289 (14) | 0.0438 (17) | 0.0234 (13) | 0.0020 (13) | −0.0076 (11) | 0.0032 (12) |
O6 | 0.065 (2) | 0.0420 (17) | 0.0432 (16) | 0.0371 (16) | −0.0322 (15) | −0.0236 (13) |
N1 | 0.0237 (15) | 0.0214 (15) | 0.0150 (12) | 0.0089 (12) | −0.0049 (11) | 0.0008 (11) |
N2 | 0.0255 (15) | 0.0233 (16) | 0.0140 (13) | 0.0114 (13) | −0.0020 (11) | 0.0008 (11) |
N3 | 0.053 (2) | 0.0324 (18) | 0.0274 (16) | 0.0284 (17) | −0.0003 (14) | 0.0015 (14) |
N4 | 0.0324 (18) | 0.0324 (18) | 0.027 (2) | 0.003 (2) | −0.0074 (11) | 0.0074 (11) |
N5 | 0.0287 (18) | 0.0302 (18) | 0.0310 (17) | 0.0083 (15) | 0.0013 (13) | 0.0035 (14) |
N6 | 0.048 (3) | 0.0290 (18) | 0.053 (3) | 0.0238 (15) | −0.019 (2) | −0.0094 (12) |
C1 | 0.038 (2) | 0.034 (2) | 0.039 (2) | 0.0182 (19) | −0.0060 (19) | 0.0007 (18) |
C2 | 0.056 (3) | 0.033 (2) | 0.056 (3) | 0.024 (2) | −0.008 (2) | 0.005 (2) |
C3 | 0.069 (3) | 0.018 (2) | 0.073 (3) | 0.015 (2) | −0.009 (3) | 0.001 (2) |
C4 | 0.047 (3) | 0.032 (2) | 0.042 (2) | 0.006 (2) | −0.011 (2) | −0.003 (2) |
C5 | 0.036 (2) | 0.031 (2) | 0.0310 (19) | 0.0140 (19) | −0.0028 (17) | 0.0045 (17) |
C6 | 0.032 (2) | 0.0218 (18) | 0.0216 (16) | 0.0135 (16) | −0.0013 (15) | −0.0028 (15) |
C7 | 0.0218 (17) | 0.0267 (19) | 0.0179 (15) | 0.0124 (16) | −0.0007 (13) | −0.0016 (15) |
C8 | 0.0258 (18) | 0.0242 (19) | 0.0212 (17) | 0.0143 (16) | −0.0003 (14) | 0.0013 (14) |
C9 | 0.043 (2) | 0.033 (2) | 0.0199 (17) | 0.0193 (19) | −0.0058 (16) | 0.0012 (16) |
C10 | 0.058 (3) | 0.026 (2) | 0.031 (2) | 0.017 (2) | 0.0017 (18) | 0.0065 (17) |
C11 | 0.042 (2) | 0.027 (2) | 0.037 (2) | 0.0088 (19) | −0.005 (2) | −0.0027 (18) |
C12 | 0.035 (2) | 0.025 (2) | 0.0264 (19) | 0.0077 (17) | −0.0073 (16) | −0.0012 (15) |
C13 | 0.0241 (18) | 0.0249 (19) | 0.0170 (16) | 0.0077 (16) | −0.0013 (14) | 0.0007 (14) |
C14 | 0.026 (2) | 0.026 (2) | 0.023 (2) | 0.015 (2) | 0.0012 (10) | −0.0012 (10) |
C15 | 0.034 (3) | 0.065 (3) | 0.039 (2) | 0.001 (2) | −0.012 (2) | 0.006 (2) |
C16 | 0.025 (2) | 0.026 (2) | 0.0276 (19) | 0.0097 (17) | 0.0011 (15) | 0.0037 (15) |
C17 | 0.089 (4) | 0.061 (3) | 0.031 (2) | 0.051 (3) | −0.005 (2) | −0.011 (2) |
C18 | 0.101 (4) | 0.050 (3) | 0.046 (3) | 0.054 (3) | 0.015 (3) | 0.013 (2) |
C19 | 0.0269 (19) | 0.0233 (18) | 0.0231 (18) | 0.0150 (17) | 0.0023 (15) | 0.0000 (15) |
C20 | 0.041 (3) | 0.044 (3) | 0.049 (3) | −0.006 (2) | 0.006 (2) | 0.000 (2) |
C21 | 0.054 (3) | 0.066 (3) | 0.047 (3) | 0.029 (3) | 0.008 (2) | 0.028 (2) |
C22 | 0.025 (3) | 0.022 (2) | 0.040 (3) | 0.0127 (14) | −0.002 (2) | −0.0010 (12) |
C23 | 0.098 (4) | 0.066 (3) | 0.060 (3) | 0.065 (3) | −0.026 (3) | −0.016 (3) |
Zn1—O2 | 1.932 (2) | C3—C4 | 1.386 (6) |
Zn1—O3i | 1.942 (2) | C3—H3 | 0.9300 |
Zn1—O1 | 1.956 (2) | C4—C5 | 1.385 (5) |
Zn1—N1 | 1.988 (2) | C4—H4 | 0.9300 |
Zn2—O6 | 1.923 (3) | C5—C6 | 1.391 (5) |
Zn2—O5ii | 1.933 (2) | C5—H5 | 0.9300 |
Zn2—O4 | 1.944 (2) | C6—C7 | 1.474 (4) |
Zn2—N2 | 2.000 (3) | C8—C9 | 1.393 (5) |
O1—C16 | 1.270 (4) | C8—C13 | 1.405 (4) |
O2—C14 | 1.271 (3) | C9—C10 | 1.374 (5) |
O3—C16 | 1.267 (4) | C9—H9 | 0.9300 |
O3—Zn1i | 1.942 (2) | C10—C11 | 1.402 (5) |
O4—C19 | 1.260 (4) | C10—H10 | 0.9300 |
O5—C19 | 1.266 (4) | C11—C12 | 1.368 (5) |
O5—Zn2ii | 1.933 (2) | C11—H11 | 0.9300 |
O6—C22 | 1.251 (3) | C12—C13 | 1.393 (5) |
N1—C7 | 1.349 (4) | C12—H12 | 0.9300 |
N1—C13 | 1.394 (4) | C14—O2i | 1.271 (3) |
N2—C7 | 1.349 (4) | C15—H15A | 0.9600 |
N2—C8 | 1.391 (4) | C15—H15B | 0.9600 |
N3—C16 | 1.349 (4) | C15—H15C | 0.9600 |
N3—C17 | 1.452 (4) | C17—H17A | 0.9600 |
N3—C18 | 1.458 (5) | C17—H17B | 0.9600 |
N4—C14 | 1.346 (6) | C17—H17C | 0.9600 |
N4—C15i | 1.444 (4) | C18—H18A | 0.9600 |
N4—C15 | 1.445 (4) | C18—H18B | 0.9600 |
N5—C19 | 1.346 (4) | C18—H18C | 0.9600 |
N5—C20 | 1.443 (5) | C20—H20A | 0.9600 |
N5—C21 | 1.450 (5) | C20—H20B | 0.9600 |
N6—C22 | 1.363 (6) | C20—H20C | 0.9600 |
N6—C23ii | 1.442 (5) | C21—H21A | 0.9600 |
N6—C23 | 1.442 (5) | C21—H21B | 0.9600 |
C1—C6 | 1.393 (5) | C21—H21C | 0.9600 |
C1—C2 | 1.394 (5) | C22—O6ii | 1.251 (3) |
C1—H1 | 0.9300 | C23—H23A | 0.9600 |
C2—C3 | 1.380 (6) | C23—H23B | 0.9600 |
C2—H2 | 0.9300 | C23—H23C | 0.9600 |
O2—Zn1—O3i | 115.83 (11) | C8—C9—H9 | 121.0 |
O2—Zn1—O1 | 106.95 (11) | C9—C10—C11 | 121.1 (3) |
O3i—Zn1—O1 | 111.27 (11) | C9—C10—H10 | 119.4 |
O2—Zn1—N1 | 109.29 (10) | C11—C10—H10 | 119.4 |
O3i—Zn1—N1 | 107.59 (10) | C12—C11—C10 | 121.5 (4) |
O1—Zn1—N1 | 105.43 (10) | C12—C11—H11 | 119.2 |
O6—Zn2—O5ii | 116.22 (13) | C10—C11—H11 | 119.2 |
O6—Zn2—O4 | 106.34 (12) | C11—C12—C13 | 117.9 (3) |
O5ii—Zn2—O4 | 110.93 (12) | C11—C12—H12 | 121.0 |
O6—Zn2—N2 | 114.79 (11) | C13—C12—H12 | 121.0 |
O5ii—Zn2—N2 | 102.32 (10) | C12—C13—N1 | 131.2 (3) |
O4—Zn2—N2 | 105.86 (11) | C12—C13—C8 | 120.9 (3) |
C16—O1—Zn1 | 136.1 (2) | N1—C13—C8 | 107.9 (3) |
C14—O2—Zn1 | 130.9 (2) | O2—C14—O2i | 124.4 (4) |
C16—O3—Zn1i | 129.2 (2) | O2—C14—N4 | 117.8 (2) |
C19—O4—Zn2 | 133.4 (2) | O2i—C14—N4 | 117.8 (2) |
C19—O5—Zn2ii | 135.6 (2) | N4—C15—H15A | 109.5 |
C22—O6—Zn2 | 133.2 (3) | N4—C15—H15B | 109.5 |
C7—N1—C13 | 104.8 (2) | H15A—C15—H15B | 109.5 |
C7—N1—Zn1 | 130.8 (2) | N4—C15—H15C | 109.5 |
C13—N1—Zn1 | 123.9 (2) | H15A—C15—H15C | 109.5 |
C7—N2—C8 | 104.8 (3) | H15B—C15—H15C | 109.5 |
C7—N2—Zn2 | 132.1 (2) | O3—C16—O1 | 124.6 (3) |
C8—N2—Zn2 | 123.0 (2) | O3—C16—N3 | 118.3 (3) |
C16—N3—C17 | 121.8 (3) | O1—C16—N3 | 117.1 (3) |
C16—N3—C18 | 121.3 (3) | N3—C17—H17A | 109.5 |
C17—N3—C18 | 116.9 (3) | N3—C17—H17B | 109.5 |
C14—N4—C15i | 122.0 (2) | H17A—C17—H17B | 109.5 |
C14—N4—C15 | 122.0 (2) | N3—C17—H17C | 109.5 |
C15i—N4—C15 | 116.0 (5) | H17A—C17—H17C | 109.5 |
C19—N5—C20 | 122.6 (3) | H17B—C17—H17C | 109.5 |
C19—N5—C21 | 121.3 (3) | N3—C18—H18A | 109.5 |
C20—N5—C21 | 116.0 (3) | N3—C18—H18B | 109.5 |
C22—N6—C23ii | 122.6 (2) | H18A—C18—H18B | 109.5 |
C22—N6—C23 | 122.6 (2) | N3—C18—H18C | 109.5 |
C23ii—N6—C23 | 114.8 (5) | H18A—C18—H18C | 109.5 |
C6—C1—C2 | 120.7 (4) | H18B—C18—H18C | 109.5 |
C6—C1—H1 | 119.6 | O4—C19—O5 | 125.0 (3) |
C2—C1—H1 | 119.6 | O4—C19—N5 | 117.2 (3) |
C3—C2—C1 | 119.0 (4) | O5—C19—N5 | 117.8 (3) |
C3—C2—H2 | 120.5 | N5—C20—H20A | 109.5 |
C1—C2—H2 | 120.5 | N5—C20—H20B | 109.5 |
C2—C3—C4 | 120.7 (4) | H20A—C20—H20B | 109.5 |
C2—C3—H3 | 119.6 | N5—C20—H20C | 109.5 |
C4—C3—H3 | 119.6 | H20A—C20—H20C | 109.5 |
C5—C4—C3 | 120.2 (4) | H20B—C20—H20C | 109.5 |
C5—C4—H4 | 119.9 | N5—C21—H21A | 109.5 |
C3—C4—H4 | 119.9 | N5—C21—H21B | 109.5 |
C4—C5—C6 | 119.9 (4) | H21A—C21—H21B | 109.5 |
C4—C5—H5 | 120.0 | N5—C21—H21C | 109.5 |
C6—C5—H5 | 120.0 | H21A—C21—H21C | 109.5 |
C5—C6—C1 | 119.4 (3) | H21B—C21—H21C | 109.5 |
C5—C6—C7 | 120.3 (3) | O6—C22—O6ii | 124.9 (5) |
C1—C6—C7 | 120.3 (3) | O6—C22—N6 | 117.6 (2) |
N1—C7—N2 | 114.3 (3) | O6ii—C22—N6 | 117.6 (2) |
N1—C7—C6 | 122.7 (3) | N6—C23—H23A | 109.5 |
N2—C7—C6 | 122.9 (3) | N6—C23—H23B | 109.5 |
N2—C8—C9 | 131.4 (3) | H23A—C23—H23B | 109.5 |
N2—C8—C13 | 108.1 (3) | N6—C23—H23C | 109.5 |
C9—C8—C13 | 120.5 (3) | H23A—C23—H23C | 109.5 |
C10—C9—C8 | 118.1 (3) | H23B—C23—H23C | 109.5 |
C10—C9—H9 | 121.0 | ||
O2—Zn1—O1—C16 | −41.4 (4) | C7—N2—C8—C13 | 0.2 (4) |
O3i—Zn1—O1—C16 | 86.0 (4) | Zn2—N2—C8—C13 | −177.1 (2) |
N1—Zn1—O1—C16 | −157.7 (3) | N2—C8—C9—C10 | 179.2 (3) |
O3i—Zn1—O2—C14 | −36.3 (3) | C13—C8—C9—C10 | −0.1 (5) |
O1—Zn1—O2—C14 | 88.3 (3) | C8—C9—C10—C11 | 0.4 (6) |
N1—Zn1—O2—C14 | −158.0 (2) | C9—C10—C11—C12 | −0.7 (6) |
O6—Zn2—O4—C19 | −62.3 (4) | C10—C11—C12—C13 | 0.5 (6) |
O5ii—Zn2—O4—C19 | 64.9 (4) | C11—C12—C13—N1 | −179.2 (4) |
N2—Zn2—O4—C19 | 175.1 (3) | C11—C12—C13—C8 | −0.2 (5) |
O5ii—Zn2—O6—C22 | −37.6 (3) | C7—N1—C13—C12 | 179.3 (4) |
O4—Zn2—O6—C22 | 86.4 (3) | Zn1—N1—C13—C12 | −7.3 (6) |
N2—Zn2—O6—C22 | −156.9 (3) | C7—N1—C13—C8 | 0.2 (4) |
O2—Zn1—N1—C7 | 33.4 (3) | Zn1—N1—C13—C8 | 173.6 (2) |
O3i—Zn1—N1—C7 | −93.2 (3) | N2—C8—C13—C12 | −179.5 (3) |
O1—Zn1—N1—C7 | 148.0 (3) | C9—C8—C13—C12 | −0.1 (5) |
O2—Zn1—N1—C13 | −138.1 (3) | N2—C8—C13—N1 | −0.3 (4) |
O3i—Zn1—N1—C13 | 95.4 (3) | C9—C8—C13—N1 | 179.2 (3) |
O1—Zn1—N1—C13 | −23.5 (3) | Zn1—O2—C14—O2i | −19.90 (16) |
O6—Zn2—N2—C7 | 39.0 (3) | Zn1—O2—C14—N4 | 160.10 (16) |
O5ii—Zn2—N2—C7 | −87.8 (3) | C15i—N4—C14—O2 | 177.0 (3) |
O4—Zn2—N2—C7 | 156.0 (3) | C15—N4—C14—O2 | −3.0 (3) |
O6—Zn2—N2—C8 | −144.5 (2) | C15i—N4—C14—O2i | −3.0 (3) |
O5ii—Zn2—N2—C8 | 88.7 (3) | C15—N4—C14—O2i | 177.0 (3) |
O4—Zn2—N2—C8 | −27.5 (3) | Zn1i—O3—C16—O1 | −8.1 (5) |
C6—C1—C2—C3 | −0.6 (6) | Zn1i—O3—C16—N3 | 172.0 (2) |
C1—C2—C3—C4 | 1.4 (7) | Zn1—O1—C16—O3 | −18.9 (6) |
C2—C3—C4—C5 | −1.2 (7) | Zn1—O1—C16—N3 | 161.0 (3) |
C3—C4—C5—C6 | 0.2 (6) | C17—N3—C16—O3 | −4.6 (6) |
C4—C5—C6—C1 | 0.6 (5) | C18—N3—C16—O3 | 178.3 (4) |
C4—C5—C6—C7 | −178.0 (3) | C17—N3—C16—O1 | 175.5 (4) |
C2—C1—C6—C5 | −0.4 (6) | C18—N3—C16—O1 | −1.7 (6) |
C2—C1—C6—C7 | 178.2 (3) | Zn2—O4—C19—O5 | 1.1 (6) |
C13—N1—C7—N2 | −0.1 (4) | Zn2—O4—C19—N5 | −178.3 (3) |
Zn1—N1—C7—N2 | −172.8 (2) | Zn2ii—O5—C19—O4 | −7.3 (6) |
C13—N1—C7—C6 | −177.6 (3) | Zn2ii—O5—C19—N5 | 172.1 (3) |
Zn1—N1—C7—C6 | 9.7 (5) | C20—N5—C19—O4 | −5.1 (5) |
C8—N2—C7—N1 | 0.0 (4) | C21—N5—C19—O4 | 178.3 (4) |
Zn2—N2—C7—N1 | 176.9 (2) | C20—N5—C19—O5 | 175.5 (4) |
C8—N2—C7—C6 | 177.5 (3) | C21—N5—C19—O5 | −1.1 (5) |
Zn2—N2—C7—C6 | −5.6 (5) | Zn2—O6—C22—O6ii | −15.56 (19) |
C5—C6—C7—N1 | −140.8 (3) | Zn2—O6—C22—N6 | 164.44 (19) |
C1—C6—C7—N1 | 40.7 (5) | C23ii—N6—C22—O6 | 179.5 (3) |
C5—C6—C7—N2 | 41.9 (5) | C23—N6—C22—O6 | −0.5 (3) |
C1—C6—C7—N2 | −136.6 (3) | C23ii—N6—C22—O6ii | −0.5 (3) |
C7—N2—C8—C9 | −179.1 (4) | C23—N6—C22—O6ii | 179.5 (3) |
Zn2—N2—C8—C9 | 3.6 (5) |
Symmetry codes: (i) y, x, −z; (ii) −x+2, −x+y+1, −z+1/3. |
Experimental details
Crystal data | |
Chemical formula | [Zn2(C13H9N2)(C3H6NO2)3] |
Mr | 588.23 |
Crystal system, space group | Trigonal, P3121 |
Temperature (K) | 188 |
a, c (Å) | 9.0521 (13), 52.470 (11) |
V (Å3) | 3723.4 (11) |
Z | 6 |
Radiation type | Mo Kα |
µ (mm−1) | 1.98 |
Crystal size (mm) | 0.20 × 0.19 × 0.15 |
Data collection | |
Diffractometer | Bruker APEX CCD diffractometer |
Absorption correction | Numerical (SADABS; Sheldrick, 1996) |
Tmin, Tmax | 0.681, 0.742 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 26966, 4386, 4132 |
Rint | 0.044 |
(sin θ/λ)max (Å−1) | 0.594 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.029, 0.059, 1.09 |
No. of reflections | 4386 |
No. of parameters | 333 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.25, −0.24 |
Absolute structure | Flack (1983), 1754 Friedel pairs |
Absolute structure parameter | 0.011 (12) |
Computer programs: SMART (Bruker, 2007), SAINT (Bruker, 2007), SHELXTL (Sheldrick, 2008), XSHELL (Bruker, 2007) and Mercury (Macrae et al., 2008).
Acknowledgements
The authors thank Charles Campana of Bruker AXS, Inc. for his assistance with this structure, and Timothy J. Boyle (Sandia) for his help with the chemical scheme. This work was supported by the US DOE-NE/FCRD-SWG. Sandia is a multiprogram laboratory managed and operated by Sandia Corporation, a wholly owned subsidiary of Lockheed Martin Corporation, for the United States Department of Energy's National Nuclear Security Administration under contract DE—AC04–94 A L85000.
References
An, J. Y., Fiorella, R. P., Geib, S. J. & Rosi, N. L. (2009). J. Am. Chem. Soc. 131, 8401–8403. Web of Science CSD CrossRef PubMed CAS Google Scholar
Bruker (2007). SAINT, SMART and XSHELL. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Dell'Amico, D. B., Calderazzo, F., Labella, L. & Marchetti, F. (2003). Inorg. Chim. Acta, 350, 661–664. CAS Google Scholar
Flack, H. D. (1983). Acta Cryst. A39, 876–881. CrossRef CAS Web of Science IUCr Journals Google Scholar
Macrae, C. F., Bruno, I. J., Chisholm, J. A., Edgington, P. R., McCabe, P., Pidcock, E., Rodriguez-Monge, L., Taylor, R., van de Streek, J. & Wood, P. A. (2008). J. Appl. Cryst. 41, 466–470. Web of Science CrossRef CAS IUCr Journals Google Scholar
Sheldrick, G. M. (1996). SADABS. University of Göttingen, Germany. Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
This manuscript documents possibly the first reported structure of the linker 2-phenylbenzimidazole (2–PBImi), as well as a coordination polymer derived from this molecule. The 2-PBImi molecule was investigated as a possible linker molecule for the synthesis of metal-organic framworks (MOFs). As a result of this research, the title compound was observed. This polymeric chain structure is derived from two tetrahedral metal centers that are capped by three dimethylcarbamates, resulting in a very rare (novel) molecular building block (MBB). There are a few published examples that display similar environments (see An, et al., 2009), but none display identical coodination. The dimethylcarbamate capping molecules formed in situ during the synthesis; there is precedence for such in situ reactions (An, et al. 2009; Dell'Amico, et al. 2003).
Figure 1 shows the MBB for the chain. A cluster composed of two Zn cations bridged by three dimethylcarbamate molecules is bracketed on either side by 2-PBImi linkers to complete the tetrahedrally coordinated Zn1 cations. A twofold axis (coincident with the a axis direction) is also shown to illustrate how the atoms in the MBB are related by symmetry. Atoms with asterisks indicate symmetry equivalent atoms within the MBB. Zn2 is also shown extending from the 2-PBImi molecule. The Zn2 metal center also binds to a second set of three dimethylcarbamate molecules. This is illustrated in Figure 2. The second set of dimethylcarbamates, which bridge the Zn2 metal center, are crystallographically unique but structurally similar to those bound to Zn1 (asterisks indicate symmetry equivalent atoms). Figure 3 shows a ball and stick representation of an individual polymer chain to illustrate the chiral behavior of the molecule. The chain propagates along the c axis direction. The observation of chirality (the compound crystallizes in the space group P3121) is interesting because the structure crystallized from achiral precursors Zn(CH3COO2)2.2H2O and 2–PBImi. Presumably the sample crystallizes as a equal fraction mixture of P3121 and P3221 symmetry.
The structure is charge-neutral. The metal to 2-PBImi ligand ratio is 2:1 because each 2-PBImi ligand is shared by the two zinc cations. Therefore, each MBB requires an additional 3- for charge balance. This is accomodated by the three dimethylcarbamate anionic molecules which cap the metals. The structure repeats itself every sixth zinc cluster, resulting in the long 52.470 (11) Å c axis.