organic compounds
1-[Amino(4-chlorophenyl)methyl]-6-bromonaphthalen-2-ol
aDepartment of Studies in Chemistry, University of Mysore, Manasagangotri, Mysore 570 006, India, bDepartment of Chemistry, University of Aberdeen, Aberdeen AB24 3UE, Scotland, and cSchool of Chemistry, University of St Andrews, St Andrews KY16 9ST, Scotland
*Correspondence e-mail: yathirajan@hotmail.com
In the title compound, C17H13BrClNO, the dihedral angle between the naphthol ring system and the chlorobenzene ring is 76.59 (11)°. This twisted conformation is supported by an intramolecular O—H⋯N hydrogen bond. In the crystal, [100] chains arise, with adjacent molecules linked by an N—H⋯O hydrogen bond, a C—H⋯π interaction and an aromatic π–π stacking contact [centroid-to-centroid separation = 3.783 (2) Å]. Weak C—H⋯O interactions also occur.
Related literature
For related naphthol–oxazine derivatives and their antimicrobial activity, see: Mayekar et al. (2011).
Experimental
Crystal data
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Refinement
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Data collection: CrystalClear (Rigaku, 2009); cell CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997); software used to prepare material for publication: SHELXL97.
Supporting information
10.1107/S1600536812002905/bq2335sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536812002905/bq2335Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536812002905/bq2335Isup3.cml
8-Bromo-1,3-bis(4-chlorophenyl)-2,3-dihydro-1H-naphtho[1,2-e][1,3]oxazine (1 mmol) (Mayekar et al., 2011), was suspended in 20% HCl (20 ml) and the mixture was stirred and refluxed for 6 h, whereby the crystalline hydrochloride salt separated out, which was filtered off and washed with ethyl acetate. The solid was suspended in water and the mixture was treated with conc. NH4OH (3 ml) and extracted with ethyl acetate. After drying (over anhydrous Na2SO4) and evaporation of the solvent, the crude product was obtained, which was further purified by recrystallization. Colourless prisms of (I) were grown from the slow evaporation of an ethyl acetate solution (M.p. 413–415 K). Anal. Calcd. for C17H13BrClNO: C 56.30; H 3.61; N 3.86%; Found: C 56.26; H 3.63; N 3.81%.
The N- and O-bound H atoms were located in a difference map. Their positions were freely refined with the constraint Uiso(H) = 1.2Ueq(N,O) applied. The C-bound H atoms were geometrically placed (C—H = 0.95 Å) and refined as riding with Uiso(H) = 1.2Ueq(C).
Data collection: CrystalClear (Rigaku, 2009); cell
CrystalClear (Rigaku, 2009); data reduction: CrystalClear (Rigaku, 2009); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).C17H13BrClNO | Z = 2 |
Mr = 361.64 | F(000) = 364 |
Triclinic, P1 | Dx = 1.691 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 4.8026 (15) Å | Cell parameters from 2706 reflections |
b = 10.785 (3) Å | θ = 2.0–28.5° |
c = 15.086 (4) Å | µ = 3.08 mm−1 |
α = 67.64 (2)° | T = 73 K |
β = 79.43 (2)° | Prism, colourless |
γ = 85.32 (2)° | 0.12 × 0.10 × 0.10 mm |
V = 710.3 (4) Å3 |
Rigaku Mercury CCD diffractometer | 2426 independent reflections |
Radiation source: fine-focus sealed tube | 2222 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.043 |
ω scans | θmax = 25.0°, θmin = 2.0° |
Absorption correction: multi-scan (CrystalClear; Rigaku, 2009) | h = −5→4 |
Tmin = 0.709, Tmax = 0.748 | k = −12→10 |
4392 measured reflections | l = −17→17 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.035 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.082 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.05 | w = 1/[σ2(Fo2) + (0.0351P)2] where P = (Fo2 + 2Fc2)/3 |
2426 reflections | (Δ/σ)max < 0.001 |
199 parameters | Δρmax = 0.39 e Å−3 |
0 restraints | Δρmin = −0.42 e Å−3 |
C17H13BrClNO | γ = 85.32 (2)° |
Mr = 361.64 | V = 710.3 (4) Å3 |
Triclinic, P1 | Z = 2 |
a = 4.8026 (15) Å | Mo Kα radiation |
b = 10.785 (3) Å | µ = 3.08 mm−1 |
c = 15.086 (4) Å | T = 73 K |
α = 67.64 (2)° | 0.12 × 0.10 × 0.10 mm |
β = 79.43 (2)° |
Rigaku Mercury CCD diffractometer | 2426 independent reflections |
Absorption correction: multi-scan (CrystalClear; Rigaku, 2009) | 2222 reflections with I > 2σ(I) |
Tmin = 0.709, Tmax = 0.748 | Rint = 0.043 |
4392 measured reflections |
R[F2 > 2σ(F2)] = 0.035 | 0 restraints |
wR(F2) = 0.082 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.05 | Δρmax = 0.39 e Å−3 |
2426 reflections | Δρmin = −0.42 e Å−3 |
199 parameters |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
C1 | 0.3027 (6) | 0.3901 (3) | 0.3133 (2) | 0.0134 (6) | |
C2 | 0.5552 (6) | 0.3781 (3) | 0.2503 (2) | 0.0145 (6) | |
H2 | 0.6413 | 0.4571 | 0.2020 | 0.017* | |
C3 | 0.6762 (6) | 0.2570 (3) | 0.2573 (2) | 0.0173 (6) | |
H3 | 0.8447 | 0.2519 | 0.2145 | 0.021* | |
C4 | 0.5505 (6) | 0.1395 (3) | 0.3281 (2) | 0.0166 (6) | |
C5 | 0.3108 (6) | 0.1435 (3) | 0.3906 (2) | 0.0169 (6) | |
H5 | 0.2297 | 0.0626 | 0.4380 | 0.020* | |
C6 | 0.1816 (6) | 0.2684 (3) | 0.3853 (2) | 0.0151 (6) | |
C7 | −0.0704 (6) | 0.2745 (3) | 0.4498 (2) | 0.0164 (6) | |
H7 | −0.1529 | 0.1938 | 0.4969 | 0.020* | |
C8 | −0.1952 (6) | 0.3941 (3) | 0.4448 (2) | 0.0162 (6) | |
H8 | −0.3644 | 0.3966 | 0.4881 | 0.019* | |
C9 | −0.0740 (6) | 0.5139 (3) | 0.3759 (2) | 0.0142 (6) | |
C10 | 0.1691 (6) | 0.5154 (3) | 0.3095 (2) | 0.0130 (6) | |
C11 | 0.2826 (6) | 0.6491 (3) | 0.2339 (2) | 0.0145 (6) | |
H11 | 0.4849 | 0.6360 | 0.2076 | 0.017* | |
C12 | 0.1154 (5) | 0.7008 (3) | 0.1501 (2) | 0.0131 (6) | |
C13 | 0.1219 (6) | 0.6284 (3) | 0.0903 (2) | 0.0190 (7) | |
H13 | 0.2285 | 0.5470 | 0.1035 | 0.023* | |
C14 | −0.0228 (6) | 0.6719 (3) | 0.0123 (2) | 0.0208 (7) | |
H14 | −0.0159 | 0.6213 | −0.0276 | 0.025* | |
C15 | −0.1785 (6) | 0.7909 (3) | −0.0065 (2) | 0.0177 (6) | |
C16 | −0.1916 (6) | 0.8636 (3) | 0.0518 (2) | 0.0177 (7) | |
H16 | −0.3005 | 0.9443 | 0.0389 | 0.021* | |
C17 | −0.0441 (6) | 0.8183 (3) | 0.1297 (2) | 0.0161 (6) | |
H17 | −0.0530 | 0.8689 | 0.1698 | 0.019* | |
Cl1 | −0.35388 (15) | 0.84899 (8) | −0.10638 (5) | 0.0249 (2) | |
Br1 | 0.72536 (6) | −0.02865 (3) | 0.33594 (2) | 0.02405 (14) | |
O1 | −0.2084 (4) | 0.6319 (2) | 0.37570 (15) | 0.0169 (5) | |
H1O | −0.070 (6) | 0.692 (3) | 0.345 (2) | 0.020* | |
N1 | 0.2704 (5) | 0.7469 (3) | 0.2819 (2) | 0.0165 (5) | |
H1N | 0.322 (6) | 0.827 (3) | 0.240 (2) | 0.020* | |
H2N | 0.387 (6) | 0.725 (3) | 0.321 (2) | 0.020* |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0138 (14) | 0.0130 (14) | 0.0145 (16) | −0.0014 (12) | −0.0055 (12) | −0.0047 (12) |
C2 | 0.0184 (15) | 0.0143 (15) | 0.0103 (15) | −0.0028 (12) | −0.0043 (12) | −0.0025 (12) |
C3 | 0.0168 (15) | 0.0195 (15) | 0.0168 (17) | 0.0000 (13) | −0.0032 (12) | −0.0079 (13) |
C4 | 0.0187 (15) | 0.0134 (14) | 0.0200 (17) | 0.0031 (12) | −0.0079 (13) | −0.0073 (13) |
C5 | 0.0197 (16) | 0.0143 (14) | 0.0172 (17) | −0.0024 (12) | −0.0062 (13) | −0.0048 (13) |
C6 | 0.0190 (15) | 0.0143 (14) | 0.0126 (16) | −0.0024 (12) | −0.0059 (12) | −0.0037 (13) |
C7 | 0.0160 (15) | 0.0181 (15) | 0.0122 (16) | −0.0037 (12) | −0.0034 (12) | −0.0014 (13) |
C8 | 0.0126 (14) | 0.0232 (16) | 0.0126 (16) | −0.0020 (13) | −0.0019 (12) | −0.0063 (13) |
C9 | 0.0136 (14) | 0.0145 (14) | 0.0155 (16) | 0.0029 (12) | −0.0071 (12) | −0.0054 (13) |
C10 | 0.0143 (14) | 0.0104 (13) | 0.0137 (15) | 0.0002 (11) | −0.0062 (12) | −0.0024 (12) |
C11 | 0.0134 (14) | 0.0119 (14) | 0.0189 (16) | 0.0003 (12) | −0.0034 (12) | −0.0062 (13) |
C12 | 0.0092 (14) | 0.0123 (14) | 0.0114 (15) | −0.0044 (11) | 0.0029 (11) | 0.0014 (12) |
C13 | 0.0210 (16) | 0.0148 (15) | 0.0186 (17) | −0.0001 (13) | −0.0045 (13) | −0.0029 (13) |
C14 | 0.0252 (17) | 0.0189 (16) | 0.0172 (17) | −0.0056 (14) | 0.0001 (13) | −0.0064 (14) |
C15 | 0.0127 (14) | 0.0241 (16) | 0.0128 (16) | −0.0036 (12) | −0.0036 (12) | −0.0017 (13) |
C16 | 0.0136 (15) | 0.0161 (15) | 0.0211 (18) | 0.0006 (12) | −0.0021 (12) | −0.0051 (13) |
C17 | 0.0157 (15) | 0.0162 (15) | 0.0168 (16) | −0.0024 (12) | −0.0019 (12) | −0.0065 (13) |
Cl1 | 0.0262 (4) | 0.0295 (4) | 0.0186 (4) | 0.0006 (4) | −0.0098 (3) | −0.0059 (4) |
Br1 | 0.0327 (2) | 0.01573 (19) | 0.0253 (2) | 0.00657 (14) | −0.00654 (15) | −0.00993 (15) |
O1 | 0.0136 (10) | 0.0140 (10) | 0.0218 (12) | 0.0029 (8) | −0.0019 (9) | −0.0063 (9) |
N1 | 0.0194 (14) | 0.0112 (12) | 0.0198 (15) | 0.0006 (11) | −0.0084 (11) | −0.0047 (11) |
C1—C2 | 1.427 (4) | C10—C11 | 1.525 (4) |
C1—C6 | 1.432 (4) | C11—N1 | 1.482 (3) |
C1—C10 | 1.434 (4) | C11—C12 | 1.522 (4) |
C2—C3 | 1.360 (4) | C11—H11 | 1.0000 |
C2—H2 | 0.9500 | C12—C17 | 1.385 (4) |
C3—C4 | 1.403 (4) | C12—C13 | 1.395 (4) |
C3—H3 | 0.9500 | C13—C14 | 1.384 (4) |
C4—C5 | 1.357 (4) | C13—H13 | 0.9500 |
C4—Br1 | 1.906 (3) | C14—C15 | 1.390 (4) |
C5—C6 | 1.416 (4) | C14—H14 | 0.9500 |
C5—H5 | 0.9500 | C15—C16 | 1.374 (4) |
C6—C7 | 1.421 (4) | C15—Cl1 | 1.741 (3) |
C7—C8 | 1.359 (4) | C16—C17 | 1.391 (4) |
C7—H7 | 0.9500 | C16—H16 | 0.9500 |
C8—C9 | 1.403 (4) | C17—H17 | 0.9500 |
C8—H8 | 0.9500 | O1—H1O | 0.90 (3) |
C9—O1 | 1.378 (3) | N1—H1N | 0.88 (3) |
C9—C10 | 1.388 (4) | N1—H2N | 0.84 (3) |
C2—C1—C6 | 117.0 (2) | C1—C10—C11 | 122.0 (2) |
C2—C1—C10 | 124.0 (3) | N1—C11—C12 | 110.7 (2) |
C6—C1—C10 | 118.9 (2) | N1—C11—C10 | 108.7 (2) |
C3—C2—C1 | 122.0 (3) | C12—C11—C10 | 111.4 (2) |
C3—C2—H2 | 119.0 | N1—C11—H11 | 108.6 |
C1—C2—H2 | 119.0 | C12—C11—H11 | 108.6 |
C2—C3—C4 | 119.6 (3) | C10—C11—H11 | 108.6 |
C2—C3—H3 | 120.2 | C17—C12—C13 | 117.9 (3) |
C4—C3—H3 | 120.2 | C17—C12—C11 | 122.8 (2) |
C5—C4—C3 | 121.6 (3) | C13—C12—C11 | 119.4 (2) |
C5—C4—Br1 | 119.9 (2) | C14—C13—C12 | 121.7 (3) |
C3—C4—Br1 | 118.5 (2) | C14—C13—H13 | 119.1 |
C4—C5—C6 | 120.0 (3) | C12—C13—H13 | 119.1 |
C4—C5—H5 | 120.0 | C13—C14—C15 | 118.8 (3) |
C6—C5—H5 | 120.0 | C13—C14—H14 | 120.6 |
C5—C6—C7 | 120.8 (3) | C15—C14—H14 | 120.6 |
C5—C6—C1 | 119.9 (2) | C16—C15—C14 | 120.7 (3) |
C7—C6—C1 | 119.3 (2) | C16—C15—Cl1 | 120.0 (2) |
C8—C7—C6 | 120.9 (3) | C14—C15—Cl1 | 119.3 (2) |
C8—C7—H7 | 119.5 | C15—C16—C17 | 119.5 (3) |
C6—C7—H7 | 119.5 | C15—C16—H16 | 120.2 |
C7—C8—C9 | 120.0 (2) | C17—C16—H16 | 120.2 |
C7—C8—H8 | 120.0 | C12—C17—C16 | 121.3 (3) |
C9—C8—H8 | 120.0 | C12—C17—H17 | 119.3 |
O1—C9—C10 | 120.7 (3) | C16—C17—H17 | 119.3 |
O1—C9—C8 | 117.1 (2) | C9—O1—H1O | 102.5 (18) |
C10—C9—C8 | 122.2 (2) | C11—N1—H1N | 112 (2) |
C9—C10—C1 | 118.6 (3) | C11—N1—H2N | 110 (2) |
C9—C10—C11 | 119.4 (2) | H1N—N1—H2N | 105 (3) |
C6—C1—C2—C3 | 0.4 (4) | C2—C1—C10—C9 | −179.1 (3) |
C10—C1—C2—C3 | 179.3 (3) | C6—C1—C10—C9 | −0.2 (4) |
C1—C2—C3—C4 | 0.2 (4) | C2—C1—C10—C11 | 2.1 (4) |
C2—C3—C4—C5 | −0.4 (4) | C6—C1—C10—C11 | −179.0 (2) |
C2—C3—C4—Br1 | 180.0 (2) | C9—C10—C11—N1 | 43.5 (3) |
C3—C4—C5—C6 | 0.0 (4) | C1—C10—C11—N1 | −137.8 (3) |
Br1—C4—C5—C6 | 179.6 (2) | C9—C10—C11—C12 | −78.8 (3) |
C4—C5—C6—C7 | 179.6 (3) | C1—C10—C11—C12 | 100.0 (3) |
C4—C5—C6—C1 | 0.6 (4) | N1—C11—C12—C17 | −5.3 (4) |
C2—C1—C6—C5 | −0.8 (4) | C10—C11—C12—C17 | 115.8 (3) |
C10—C1—C6—C5 | −179.8 (2) | N1—C11—C12—C13 | 174.4 (2) |
C2—C1—C6—C7 | −179.7 (2) | C10—C11—C12—C13 | −64.5 (3) |
C10—C1—C6—C7 | 1.3 (4) | C17—C12—C13—C14 | 0.7 (4) |
C5—C6—C7—C8 | −179.9 (3) | C11—C12—C13—C14 | −179.1 (3) |
C1—C6—C7—C8 | −1.0 (4) | C12—C13—C14—C15 | 0.0 (4) |
C6—C7—C8—C9 | −0.5 (4) | C13—C14—C15—C16 | −0.7 (4) |
C7—C8—C9—O1 | −179.0 (2) | C13—C14—C15—Cl1 | 178.3 (2) |
C7—C8—C9—C10 | 1.6 (4) | C14—C15—C16—C17 | 0.8 (4) |
O1—C9—C10—C1 | 179.3 (2) | Cl1—C15—C16—C17 | −178.2 (2) |
C8—C9—C10—C1 | −1.3 (4) | C13—C12—C17—C16 | −0.5 (4) |
O1—C9—C10—C11 | −1.9 (4) | C11—C12—C17—C16 | 179.2 (3) |
C8—C9—C10—C11 | 177.5 (2) | C15—C16—C17—C12 | −0.2 (4) |
Cg1 is the centroid of the C12–C17 benzene ring. |
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1O···N1 | 0.90 (3) | 1.76 (3) | 2.601 (3) | 155 (3) |
N1—H2N···O1i | 0.84 (3) | 2.26 (3) | 3.043 (3) | 155 (3) |
C8—H8···O1ii | 0.95 | 2.57 | 3.510 (4) | 171 |
C11—H11···Cg1i | 1.00 | 2.80 | 3.682 (3) | 148 |
Symmetry codes: (i) x+1, y, z; (ii) −x−1, −y+1, −z+1. |
Experimental details
Crystal data | |
Chemical formula | C17H13BrClNO |
Mr | 361.64 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 73 |
a, b, c (Å) | 4.8026 (15), 10.785 (3), 15.086 (4) |
α, β, γ (°) | 67.64 (2), 79.43 (2), 85.32 (2) |
V (Å3) | 710.3 (4) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 3.08 |
Crystal size (mm) | 0.12 × 0.10 × 0.10 |
Data collection | |
Diffractometer | Rigaku Mercury CCD diffractometer |
Absorption correction | Multi-scan (CrystalClear; Rigaku, 2009) |
Tmin, Tmax | 0.709, 0.748 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 4392, 2426, 2222 |
Rint | 0.043 |
(sin θ/λ)max (Å−1) | 0.594 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.035, 0.082, 1.05 |
No. of reflections | 2426 |
No. of parameters | 199 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.39, −0.42 |
Computer programs: CrystalClear (Rigaku, 2009), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 (Farrugia, 1997).
Cg1 is the centroid of the C12–C17 benzene ring. |
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1O···N1 | 0.90 (3) | 1.76 (3) | 2.601 (3) | 155 (3) |
N1—H2N···O1i | 0.84 (3) | 2.26 (3) | 3.043 (3) | 155 (3) |
C8—H8···O1ii | 0.95 | 2.57 | 3.510 (4) | 171 |
C11—H11···Cg1i | 1.00 | 2.80 | 3.682 (3) | 148 |
Symmetry codes: (i) x+1, y, z; (ii) −x−1, −y+1, −z+1. |
Acknowledgements
ASP thanks the University of Mysore for research facilities.
References
Farrugia, L. J. (1997). J. Appl. Cryst. 30, 565. CrossRef IUCr Journals Google Scholar
Mayekar, A. N., Yathirajan, H. S., Narayana, B., Sarojini, B. K., Suchetha Kumari, N. & Harrison, W. T. A. (2011). Int. J. Chem. 3, 74–86. CrossRef CAS Google Scholar
Rigaku (2009). CrystalClear. Rigaku Corporation, Tokyo, Japan. Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
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As part of our ongoing studies of naphthol–oxazines (Mayekar et al., 2011), we now describe the synthesis and crystal structure of the title compound, (I), (Fig. 1).
The naphthol ring system (C1–C10) in (I) is almost planar (r.m.s. deviation = 0.007 Å) and the Br atom deviates from the mean plane by 0.012 (1) Å. The dihedral angle between the naphthol and chlorobenzene rings is 76.59 (11)°. Atom C11 is a stereogenic centre: in the arbitrarily chosen asymmetric molecule, it has R configuration, but crystal symmetry generates a racemic mixture. The C1—C10—C11—C12 torsion angle is 100.0 (3)° and the twisted conformation of the molecule is supported by an intramolecular O—H···N hydrogen bond (Table 1).
In the crystal, the molecules are linked into [100] chains (Fig. 2), with adjacent molecules linked by an N—H···O hydrogen bond, a C—H···π interaction and a weak π–π stacking contact [centroid–centroid separation = 3.783 (2) Å] between the phenol and bromobenzene rings. A weak C—H···O interaction also occur.