organic compounds
2,2′-(Disulfanediyl)bis[4,6-(4-fluorophenyl)pyrimidine]
aNelson Mandela Metropolitan University, Summerstrand Campus, Department of Chemistry, University Way, Summerstrand, PO Box 77000, Port Elizabeth 6031, South Africa, bMangalore University, Department of Studies in Chemistry, Mangalagangotri 574 199, India, and cP. A. College of Engineering, Department of Chemistry, Nadupadavu, Mangalore 574 199, India
*Correspondence e-mail: richard.betz@webmail.co.za
The title compound, C32H18F4N4S2, is a disulfide symmetrically substituted with two diaza-meta-terphenyl groups. In the crystal, the molecule adopts a twisted conformation with a C—S—S—C torsion angle of −91.82 (7)°. One of the 4,6-(4-fluorophenyl)pyrimidine groups is virtually planar, with dihedral angles between the pyrimidine and benzene groups of 4.00 (8) and 5.44 (8)°, wheares the other is non-planar with analogues dihedral angles of 18.69 (8) and 26.60 (8)°. The planar 4,6-(4-fluorophenyl)pyrimidine groups are involved in π–π stacking interactions via their 4-fluorophenyl groups [centroid–centroid distances of 3.8556 (11) and 3.9284 (11) Å] that assemble the molecules into columns extended along the a axis. In addition, the structure is stabilized by C—F⋯π [F⋯centroid = 3.4017 (16) Å], C—H⋯F and C—H⋯π interactions.
Related literature
For our work on the synthesis of different derivatives of et al. (2011); Fun et al. (2010); Jasinski et al. (2010); Baktır et al. (2011). For the graph-set analysis of hydrogen bonds, see: Etter et al. (1990); Bernstein et al. (1995). Metrical parameters of similar compounds were retrieved from the Cambridge Structural Database (Allen, 2002).
see: SamshuddinExperimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2010); cell SAINT (Bruker, 2010); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997) and Mercury (Macrae et al., 2008); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009).
Supporting information
10.1107/S1600536812001912/gk2426sup1.cif
contains datablocks I, global. DOI:Supporting information file. DOI: 10.1107/S1600536812001912/gk2426Isup2.cdx
Structure factors: contains datablock I. DOI: 10.1107/S1600536812001912/gk2426Isup3.hkl
Supporting information file. DOI: 10.1107/S1600536812001912/gk2426Isup4.cml
A mixture of 4,4'-difluorochalcone (2.44 g, 0.01 mol) and thiourea (0.76 g, 0.01 mol) was refluxed for 22 h in 25 ml of ethanolic KOH solution. The reaction mixture was cooled to room temperature and kept overnight. The solid product obtained on acidification with acetic acid was filtered and recrystallized from ethanol to obtain a yellow crystalline solid (yield: 51%). Single crystals suitable for the X-ray diffraction study were grown from DMF by slow evaporation at room temperature.
All H atoms were placed in calculated positions (C—H = 0.95 Å) and were included in the
in the riding model approximation, with Uiso(H) set to 1.2Ueq(C).Data collection: APEX2 (Bruker, 2010); cell
SAINT (Bruker, 2010); data reduction: SAINT (Bruker, 2010); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997) and Mercury (Macrae et al., 2008); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008) and PLATON (Spek, 2009).C32H18F4N4S2 | Z = 2 |
Mr = 598.62 | F(000) = 612 |
Triclinic, P1 | Dx = 1.468 Mg m−3 |
Hall symbol: -P 1 | Melting point: 473 K |
a = 9.3371 (2) Å | Mo Kα radiation, λ = 0.71073 Å |
b = 11.3093 (3) Å | Cell parameters from 9335 reflections |
c = 13.1984 (3) Å | θ = 2.7–28.3° |
α = 102.364 (1)° | µ = 0.26 mm−1 |
β = 93.094 (1)° | T = 200 K |
γ = 94.010 (1)° | Block, colourless |
V = 1354.64 (6) Å3 | 0.50 × 0.42 × 0.29 mm |
Bruker APEXII CCD diffractometer | 6451 independent reflections |
Radiation source: fine-focus sealed tube | 5761 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.019 |
ϕ and ω scans | θmax = 28.0°, θmin = 1.6° |
Absorption correction: multi-scan (SADABS; Bruker, 2008) | h = −12→12 |
Tmin = 0.899, Tmax = 1.000 | k = −14→14 |
22345 measured reflections | l = −17→17 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.043 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.106 | H-atom parameters constrained |
S = 1.08 | w = 1/[σ2(Fo2) + (0.0346P)2 + 0.9028P] where P = (Fo2 + 2Fc2)/3 |
6451 reflections | (Δ/σ)max < 0.001 |
379 parameters | Δρmax = 0.31 e Å−3 |
0 restraints | Δρmin = −0.32 e Å−3 |
C32H18F4N4S2 | γ = 94.010 (1)° |
Mr = 598.62 | V = 1354.64 (6) Å3 |
Triclinic, P1 | Z = 2 |
a = 9.3371 (2) Å | Mo Kα radiation |
b = 11.3093 (3) Å | µ = 0.26 mm−1 |
c = 13.1984 (3) Å | T = 200 K |
α = 102.364 (1)° | 0.50 × 0.42 × 0.29 mm |
β = 93.094 (1)° |
Bruker APEXII CCD diffractometer | 6451 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2008) | 5761 reflections with I > 2σ(I) |
Tmin = 0.899, Tmax = 1.000 | Rint = 0.019 |
22345 measured reflections |
R[F2 > 2σ(F2)] = 0.043 | 0 restraints |
wR(F2) = 0.106 | H-atom parameters constrained |
S = 1.08 | Δρmax = 0.31 e Å−3 |
6451 reflections | Δρmin = −0.32 e Å−3 |
379 parameters |
x | y | z | Uiso*/Ueq | ||
S1 | 0.37731 (5) | 0.31376 (4) | 0.26342 (3) | 0.03759 (11) | |
S2 | 0.23667 (4) | 0.41454 (4) | 0.34681 (3) | 0.03494 (10) | |
F1 | −0.06380 (17) | 0.81314 (12) | −0.05425 (12) | 0.0723 (4) | |
F2 | 0.73521 (13) | −0.01865 (10) | −0.30804 (9) | 0.0521 (3) | |
F3 | 0.02419 (15) | 1.00874 (11) | 0.83195 (11) | 0.0637 (3) | |
F4 | 1.10058 (14) | 0.77983 (16) | 0.33546 (12) | 0.0774 (4) | |
N1 | 0.29556 (14) | 0.44408 (12) | 0.12393 (10) | 0.0311 (3) | |
N2 | 0.44257 (14) | 0.27892 (12) | 0.07397 (10) | 0.0320 (3) | |
N3 | 0.26650 (14) | 0.61506 (12) | 0.48428 (10) | 0.0320 (3) | |
N4 | 0.47390 (14) | 0.57227 (13) | 0.38773 (10) | 0.0334 (3) | |
C1 | 0.36867 (17) | 0.35313 (14) | 0.13960 (11) | 0.0309 (3) | |
C2 | 0.29035 (16) | 0.46115 (13) | 0.02575 (12) | 0.0292 (3) | |
C3 | 0.36157 (17) | 0.38768 (15) | −0.05031 (12) | 0.0334 (3) | |
H3 | 0.3566 | 0.3989 | −0.1197 | 0.040* | |
C4 | 0.44010 (16) | 0.29759 (14) | −0.02361 (11) | 0.0294 (3) | |
C5 | 0.34108 (16) | 0.54935 (14) | 0.41297 (11) | 0.0308 (3) | |
C6 | 0.33586 (17) | 0.71875 (14) | 0.54009 (12) | 0.0318 (3) | |
C7 | 0.47672 (17) | 0.75261 (15) | 0.52079 (12) | 0.0349 (3) | |
H7 | 0.5264 | 0.8257 | 0.5600 | 0.042* | |
C8 | 0.54258 (17) | 0.67698 (15) | 0.44294 (12) | 0.0331 (3) | |
C11 | 0.20270 (17) | 0.55857 (14) | 0.00478 (12) | 0.0320 (3) | |
C12 | 0.12508 (18) | 0.62160 (15) | 0.08269 (14) | 0.0370 (3) | |
H12 | 0.1329 | 0.6046 | 0.1501 | 0.044* | |
C13 | 0.0366 (2) | 0.70877 (16) | 0.06379 (16) | 0.0440 (4) | |
H13 | −0.0162 | 0.7519 | 0.1173 | 0.053* | |
C14 | 0.0272 (2) | 0.73108 (16) | −0.03430 (17) | 0.0499 (5) | |
C15 | 0.1043 (3) | 0.67359 (18) | −0.11258 (16) | 0.0552 (5) | |
H15 | 0.0969 | 0.6925 | −0.1793 | 0.066* | |
C16 | 0.1936 (2) | 0.58729 (17) | −0.09272 (14) | 0.0459 (4) | |
H16 | 0.2490 | 0.5473 | −0.1460 | 0.055* | |
C21 | 0.52169 (16) | 0.21607 (14) | −0.09826 (12) | 0.0300 (3) | |
C22 | 0.53314 (18) | 0.23192 (16) | −0.19960 (13) | 0.0371 (3) | |
H22 | 0.4902 | 0.2973 | −0.2207 | 0.045* | |
C23 | 0.60651 (18) | 0.15328 (17) | −0.26961 (13) | 0.0393 (4) | |
H23 | 0.6139 | 0.1637 | −0.3387 | 0.047* | |
C24 | 0.66812 (18) | 0.06038 (15) | −0.23720 (13) | 0.0373 (3) | |
C25 | 0.6638 (2) | 0.04285 (16) | −0.13765 (14) | 0.0425 (4) | |
H25 | 0.7102 | −0.0212 | −0.1170 | 0.051* | |
C26 | 0.58958 (19) | 0.12172 (15) | −0.06828 (13) | 0.0378 (3) | |
H26 | 0.5848 | 0.1113 | 0.0010 | 0.045* | |
C31 | 0.25489 (17) | 0.79344 (14) | 0.61996 (12) | 0.0327 (3) | |
C32 | 0.10495 (17) | 0.77498 (15) | 0.61593 (13) | 0.0346 (3) | |
H32 | 0.0560 | 0.7119 | 0.5637 | 0.042* | |
C33 | 0.02688 (19) | 0.84753 (16) | 0.68718 (14) | 0.0393 (4) | |
H33 | −0.0752 | 0.8360 | 0.6835 | 0.047* | |
C34 | 0.1000 (2) | 0.93649 (16) | 0.76335 (15) | 0.0435 (4) | |
C35 | 0.2474 (2) | 0.95525 (17) | 0.77240 (17) | 0.0512 (5) | |
H35 | 0.2954 | 1.0161 | 0.8270 | 0.061* | |
C36 | 0.3244 (2) | 0.88330 (17) | 0.69998 (15) | 0.0460 (4) | |
H36 | 0.4265 | 0.8954 | 0.7049 | 0.055* | |
C41 | 0.69065 (17) | 0.70585 (16) | 0.41465 (12) | 0.0360 (3) | |
C42 | 0.7498 (2) | 0.82591 (19) | 0.43150 (15) | 0.0453 (4) | |
H42 | 0.6955 | 0.8905 | 0.4621 | 0.054* | |
C43 | 0.8882 (2) | 0.8507 (2) | 0.40345 (16) | 0.0530 (5) | |
H43 | 0.9290 | 0.9321 | 0.4137 | 0.064* | |
C44 | 0.9643 (2) | 0.7556 (2) | 0.36075 (15) | 0.0528 (5) | |
C45 | 0.9107 (2) | 0.6363 (2) | 0.34300 (16) | 0.0518 (5) | |
H45 | 0.9668 | 0.5725 | 0.3134 | 0.062* | |
C46 | 0.77154 (19) | 0.61228 (18) | 0.36986 (14) | 0.0421 (4) | |
H46 | 0.7310 | 0.5306 | 0.3574 | 0.050* |
U11 | U22 | U33 | U12 | U13 | U23 | |
S1 | 0.0500 (2) | 0.0384 (2) | 0.02800 (19) | 0.01296 (17) | 0.00568 (16) | 0.01157 (15) |
S2 | 0.0364 (2) | 0.0365 (2) | 0.03120 (19) | −0.00018 (15) | 0.00548 (15) | 0.00601 (15) |
F1 | 0.0848 (10) | 0.0544 (7) | 0.0823 (10) | 0.0325 (7) | −0.0139 (8) | 0.0213 (7) |
F2 | 0.0581 (7) | 0.0488 (6) | 0.0472 (6) | 0.0148 (5) | 0.0151 (5) | −0.0004 (5) |
F3 | 0.0668 (8) | 0.0465 (7) | 0.0701 (8) | 0.0144 (6) | 0.0177 (6) | −0.0103 (6) |
F4 | 0.0405 (7) | 0.1182 (13) | 0.0760 (9) | −0.0167 (7) | 0.0180 (6) | 0.0305 (9) |
N1 | 0.0334 (6) | 0.0321 (6) | 0.0283 (6) | 0.0045 (5) | 0.0021 (5) | 0.0074 (5) |
N2 | 0.0335 (6) | 0.0352 (7) | 0.0287 (6) | 0.0058 (5) | 0.0026 (5) | 0.0087 (5) |
N3 | 0.0300 (6) | 0.0357 (7) | 0.0307 (6) | 0.0016 (5) | 0.0020 (5) | 0.0085 (5) |
N4 | 0.0315 (6) | 0.0414 (7) | 0.0298 (6) | 0.0033 (5) | 0.0047 (5) | 0.0126 (5) |
C1 | 0.0336 (7) | 0.0332 (7) | 0.0267 (7) | 0.0024 (6) | 0.0014 (6) | 0.0085 (6) |
C2 | 0.0282 (7) | 0.0297 (7) | 0.0297 (7) | −0.0012 (5) | −0.0011 (5) | 0.0086 (6) |
C3 | 0.0373 (8) | 0.0370 (8) | 0.0278 (7) | 0.0049 (6) | 0.0021 (6) | 0.0110 (6) |
C4 | 0.0281 (7) | 0.0318 (7) | 0.0282 (7) | −0.0007 (5) | 0.0018 (5) | 0.0077 (6) |
C5 | 0.0315 (7) | 0.0366 (8) | 0.0264 (7) | 0.0017 (6) | 0.0012 (6) | 0.0119 (6) |
C6 | 0.0321 (7) | 0.0348 (8) | 0.0302 (7) | 0.0016 (6) | −0.0001 (6) | 0.0115 (6) |
C7 | 0.0336 (8) | 0.0393 (8) | 0.0321 (8) | −0.0025 (6) | −0.0010 (6) | 0.0113 (6) |
C8 | 0.0309 (7) | 0.0427 (8) | 0.0290 (7) | 0.0010 (6) | 0.0000 (6) | 0.0159 (6) |
C11 | 0.0323 (7) | 0.0285 (7) | 0.0349 (8) | −0.0006 (6) | −0.0031 (6) | 0.0082 (6) |
C12 | 0.0379 (8) | 0.0344 (8) | 0.0395 (8) | 0.0035 (6) | 0.0015 (7) | 0.0100 (7) |
C13 | 0.0433 (9) | 0.0357 (8) | 0.0522 (10) | 0.0084 (7) | 0.0016 (8) | 0.0070 (7) |
C14 | 0.0538 (11) | 0.0323 (9) | 0.0634 (12) | 0.0092 (8) | −0.0146 (9) | 0.0130 (8) |
C15 | 0.0795 (15) | 0.0446 (10) | 0.0440 (10) | 0.0137 (10) | −0.0101 (10) | 0.0165 (8) |
C16 | 0.0620 (12) | 0.0413 (9) | 0.0364 (9) | 0.0113 (8) | 0.0000 (8) | 0.0117 (7) |
C21 | 0.0273 (7) | 0.0323 (7) | 0.0291 (7) | −0.0008 (6) | 0.0020 (5) | 0.0048 (6) |
C22 | 0.0368 (8) | 0.0445 (9) | 0.0323 (8) | 0.0084 (7) | 0.0035 (6) | 0.0117 (7) |
C23 | 0.0363 (8) | 0.0521 (10) | 0.0296 (8) | 0.0060 (7) | 0.0055 (6) | 0.0080 (7) |
C24 | 0.0320 (8) | 0.0382 (8) | 0.0376 (8) | 0.0009 (6) | 0.0064 (6) | −0.0010 (7) |
C25 | 0.0489 (10) | 0.0362 (8) | 0.0443 (9) | 0.0113 (7) | 0.0067 (8) | 0.0095 (7) |
C26 | 0.0438 (9) | 0.0376 (8) | 0.0341 (8) | 0.0058 (7) | 0.0057 (7) | 0.0106 (7) |
C31 | 0.0340 (8) | 0.0318 (7) | 0.0330 (8) | 0.0026 (6) | 0.0017 (6) | 0.0083 (6) |
C32 | 0.0344 (8) | 0.0355 (8) | 0.0335 (8) | 0.0019 (6) | 0.0001 (6) | 0.0074 (6) |
C33 | 0.0369 (8) | 0.0378 (8) | 0.0441 (9) | 0.0063 (7) | 0.0058 (7) | 0.0096 (7) |
C34 | 0.0531 (10) | 0.0313 (8) | 0.0460 (10) | 0.0104 (7) | 0.0092 (8) | 0.0046 (7) |
C35 | 0.0538 (11) | 0.0379 (9) | 0.0529 (11) | 0.0000 (8) | −0.0012 (9) | −0.0077 (8) |
C36 | 0.0384 (9) | 0.0421 (9) | 0.0515 (11) | −0.0013 (7) | −0.0011 (8) | −0.0004 (8) |
C41 | 0.0311 (7) | 0.0506 (9) | 0.0291 (7) | −0.0020 (7) | 0.0003 (6) | 0.0171 (7) |
C42 | 0.0414 (9) | 0.0535 (11) | 0.0431 (9) | −0.0045 (8) | 0.0022 (7) | 0.0183 (8) |
C43 | 0.0474 (10) | 0.0652 (13) | 0.0479 (11) | −0.0160 (9) | −0.0002 (8) | 0.0233 (9) |
C44 | 0.0336 (9) | 0.0871 (15) | 0.0401 (10) | −0.0092 (9) | 0.0050 (7) | 0.0229 (10) |
C45 | 0.0390 (9) | 0.0746 (14) | 0.0452 (10) | 0.0052 (9) | 0.0113 (8) | 0.0184 (10) |
C46 | 0.0360 (8) | 0.0555 (10) | 0.0373 (9) | 0.0002 (7) | 0.0069 (7) | 0.0161 (8) |
S1—C1 | 1.7827 (15) | C15—H15 | 0.9500 |
S1—S2 | 2.0156 (6) | C16—H16 | 0.9500 |
S2—C5 | 1.7798 (16) | C21—C26 | 1.395 (2) |
F1—C14 | 1.357 (2) | C21—C22 | 1.396 (2) |
F2—C24 | 1.3598 (18) | C22—C23 | 1.384 (2) |
F3—C34 | 1.350 (2) | C22—H22 | 0.9500 |
F4—C44 | 1.357 (2) | C23—C24 | 1.367 (3) |
N1—C1 | 1.319 (2) | C23—H23 | 0.9500 |
N1—C2 | 1.3492 (19) | C24—C25 | 1.372 (3) |
N2—C1 | 1.329 (2) | C25—C26 | 1.386 (2) |
N2—C4 | 1.3482 (19) | C25—H25 | 0.9500 |
N3—C5 | 1.329 (2) | C26—H26 | 0.9500 |
N3—C6 | 1.345 (2) | C31—C36 | 1.394 (2) |
N4—C5 | 1.324 (2) | C31—C32 | 1.397 (2) |
N4—C8 | 1.349 (2) | C32—C33 | 1.384 (2) |
C2—C3 | 1.390 (2) | C32—H32 | 0.9500 |
C2—C11 | 1.481 (2) | C33—C34 | 1.373 (3) |
C3—C4 | 1.389 (2) | C33—H33 | 0.9500 |
C3—H3 | 0.9500 | C34—C35 | 1.373 (3) |
C4—C21 | 1.480 (2) | C35—C36 | 1.384 (3) |
C6—C7 | 1.396 (2) | C35—H35 | 0.9500 |
C6—C31 | 1.480 (2) | C36—H36 | 0.9500 |
C7—C8 | 1.389 (2) | C41—C46 | 1.390 (3) |
C7—H7 | 0.9500 | C41—C42 | 1.397 (3) |
C8—C41 | 1.484 (2) | C42—C43 | 1.389 (3) |
C11—C12 | 1.389 (2) | C42—H42 | 0.9500 |
C11—C16 | 1.393 (2) | C43—C44 | 1.368 (3) |
C12—C13 | 1.383 (2) | C43—H43 | 0.9500 |
C12—H12 | 0.9500 | C44—C45 | 1.372 (3) |
C13—C14 | 1.371 (3) | C45—C46 | 1.389 (2) |
C13—H13 | 0.9500 | C45—H45 | 0.9500 |
C14—C15 | 1.367 (3) | C46—H46 | 0.9500 |
C15—C16 | 1.384 (3) | ||
C1—S1—S2 | 105.41 (5) | C23—C22—C21 | 120.60 (16) |
C5—S2—S1 | 104.74 (6) | C23—C22—H22 | 119.7 |
C1—N1—C2 | 115.20 (13) | C21—C22—H22 | 119.7 |
C1—N2—C4 | 115.30 (13) | C24—C23—C22 | 118.61 (15) |
C5—N3—C6 | 115.81 (13) | C24—C23—H23 | 120.7 |
C5—N4—C8 | 114.91 (14) | C22—C23—H23 | 120.7 |
N1—C1—N2 | 129.52 (14) | F2—C24—C23 | 117.82 (15) |
N1—C1—S1 | 120.58 (12) | F2—C24—C25 | 119.01 (16) |
N2—C1—S1 | 109.89 (11) | C23—C24—C25 | 123.17 (15) |
N1—C2—C3 | 120.47 (14) | C24—C25—C26 | 117.77 (16) |
N1—C2—C11 | 116.29 (13) | C24—C25—H25 | 121.1 |
C3—C2—C11 | 123.22 (14) | C26—C25—H25 | 121.1 |
C4—C3—C2 | 119.16 (14) | C25—C26—C21 | 121.27 (15) |
C4—C3—H3 | 120.4 | C25—C26—H26 | 119.4 |
C2—C3—H3 | 120.4 | C21—C26—H26 | 119.4 |
N2—C4—C3 | 120.26 (14) | C36—C31—C32 | 118.43 (15) |
N2—C4—C21 | 116.35 (13) | C36—C31—C6 | 121.64 (15) |
C3—C4—C21 | 123.37 (13) | C32—C31—C6 | 119.93 (14) |
N4—C5—N3 | 129.16 (15) | C33—C32—C31 | 120.76 (15) |
N4—C5—S2 | 120.13 (12) | C33—C32—H32 | 119.6 |
N3—C5—S2 | 110.71 (11) | C31—C32—H32 | 119.6 |
N3—C6—C7 | 120.32 (15) | C34—C33—C32 | 118.64 (16) |
N3—C6—C31 | 116.76 (14) | C34—C33—H33 | 120.7 |
C7—C6—C31 | 122.91 (14) | C32—C33—H33 | 120.7 |
C8—C7—C6 | 118.45 (15) | F3—C34—C35 | 118.55 (17) |
C8—C7—H7 | 120.8 | F3—C34—C33 | 118.85 (17) |
C6—C7—H7 | 120.8 | C35—C34—C33 | 122.60 (17) |
N4—C8—C7 | 121.34 (14) | C34—C35—C36 | 118.30 (17) |
N4—C8—C41 | 115.90 (15) | C34—C35—H35 | 120.8 |
C7—C8—C41 | 122.76 (15) | C36—C35—H35 | 120.8 |
C12—C11—C16 | 118.72 (15) | C35—C36—C31 | 121.21 (17) |
C12—C11—C2 | 119.89 (14) | C35—C36—H36 | 119.4 |
C16—C11—C2 | 121.37 (15) | C31—C36—H36 | 119.4 |
C13—C12—C11 | 121.13 (16) | C46—C41—C42 | 119.34 (16) |
C13—C12—H12 | 119.4 | C46—C41—C8 | 119.66 (16) |
C11—C12—H12 | 119.4 | C42—C41—C8 | 121.00 (16) |
C14—C13—C12 | 118.09 (18) | C43—C42—C41 | 120.0 (2) |
C14—C13—H13 | 121.0 | C43—C42—H42 | 120.0 |
C12—C13—H13 | 121.0 | C41—C42—H42 | 120.0 |
F1—C14—C15 | 118.92 (19) | C44—C43—C42 | 118.61 (19) |
F1—C14—C13 | 118.28 (19) | C44—C43—H43 | 120.7 |
C15—C14—C13 | 122.80 (17) | C42—C43—H43 | 120.7 |
C14—C15—C16 | 118.70 (18) | F4—C44—C43 | 118.6 (2) |
C14—C15—H15 | 120.7 | F4—C44—C45 | 118.0 (2) |
C16—C15—H15 | 120.7 | C43—C44—C45 | 123.44 (18) |
C15—C16—C11 | 120.50 (18) | C44—C45—C46 | 117.6 (2) |
C15—C16—H16 | 119.8 | C44—C45—H45 | 121.2 |
C11—C16—H16 | 119.8 | C46—C45—H45 | 121.2 |
C26—C21—C22 | 118.54 (15) | C45—C46—C41 | 121.01 (18) |
C26—C21—C4 | 120.41 (14) | C45—C46—H46 | 119.5 |
C22—C21—C4 | 121.05 (14) | C41—C46—H46 | 119.5 |
C1—S1—S2—C5 | −91.82 (7) | N2—C4—C21—C26 | 3.4 (2) |
C2—N1—C1—N2 | 2.9 (2) | C3—C4—C21—C26 | −175.27 (15) |
C2—N1—C1—S1 | −176.59 (11) | N2—C4—C21—C22 | −176.28 (14) |
C4—N2—C1—N1 | −1.5 (2) | C3—C4—C21—C22 | 5.1 (2) |
C4—N2—C1—S1 | 178.03 (11) | C26—C21—C22—C23 | 2.0 (2) |
S2—S1—C1—N1 | 8.39 (14) | C4—C21—C22—C23 | −178.31 (15) |
S2—S1—C1—N2 | −171.23 (10) | C21—C22—C23—C24 | −0.4 (3) |
C1—N1—C2—C3 | −1.5 (2) | C22—C23—C24—F2 | 177.63 (15) |
C1—N1—C2—C11 | 176.95 (13) | C22—C23—C24—C25 | −1.6 (3) |
N1—C2—C3—C4 | −1.0 (2) | F2—C24—C25—C26 | −177.34 (15) |
C11—C2—C3—C4 | −179.30 (14) | C23—C24—C25—C26 | 1.9 (3) |
C1—N2—C4—C3 | −1.3 (2) | C24—C25—C26—C21 | −0.2 (3) |
C1—N2—C4—C21 | 179.99 (13) | C22—C21—C26—C25 | −1.7 (3) |
C2—C3—C4—N2 | 2.5 (2) | C4—C21—C26—C25 | 178.59 (15) |
C2—C3—C4—C21 | −178.93 (14) | N3—C6—C31—C36 | 162.50 (16) |
C8—N4—C5—N3 | 0.4 (2) | C7—C6—C31—C36 | −18.4 (2) |
C8—N4—C5—S2 | 179.94 (11) | N3—C6—C31—C32 | −17.8 (2) |
C6—N3—C5—N4 | −1.1 (2) | C7—C6—C31—C32 | 161.33 (15) |
C6—N3—C5—S2 | 179.26 (11) | C36—C31—C32—C33 | 2.6 (2) |
S1—S2—C5—N4 | 10.80 (13) | C6—C31—C32—C33 | −177.10 (15) |
S1—S2—C5—N3 | −169.55 (9) | C31—C32—C33—C34 | −1.3 (3) |
C5—N3—C6—C7 | 0.8 (2) | C32—C33—C34—F3 | 178.93 (16) |
C5—N3—C6—C31 | 179.98 (13) | C32—C33—C34—C35 | −0.9 (3) |
N3—C6—C7—C8 | 0.1 (2) | F3—C34—C35—C36 | −178.10 (18) |
C31—C6—C7—C8 | −179.02 (14) | C33—C34—C35—C36 | 1.7 (3) |
C5—N4—C8—C7 | 0.7 (2) | C34—C35—C36—C31 | −0.3 (3) |
C5—N4—C8—C41 | −178.85 (13) | C32—C31—C36—C35 | −1.8 (3) |
C6—C7—C8—N4 | −0.9 (2) | C6—C31—C36—C35 | 177.95 (17) |
C6—C7—C8—C41 | 178.62 (14) | N4—C8—C41—C46 | −26.2 (2) |
N1—C2—C11—C12 | −3.7 (2) | C7—C8—C41—C46 | 154.22 (16) |
C3—C2—C11—C12 | 174.69 (15) | N4—C8—C41—C42 | 153.20 (15) |
N1—C2—C11—C16 | 177.69 (15) | C7—C8—C41—C42 | −26.3 (2) |
C3—C2—C11—C16 | −3.9 (2) | C46—C41—C42—C43 | 0.1 (3) |
C16—C11—C12—C13 | 2.0 (3) | C8—C41—C42—C43 | −179.39 (16) |
C2—C11—C12—C13 | −176.68 (15) | C41—C42—C43—C44 | −0.8 (3) |
C11—C12—C13—C14 | 0.2 (3) | C42—C43—C44—F4 | −178.60 (17) |
C12—C13—C14—F1 | 177.49 (17) | C42—C43—C44—C45 | 0.7 (3) |
C12—C13—C14—C15 | −1.9 (3) | F4—C44—C45—C46 | 179.51 (17) |
F1—C14—C15—C16 | −178.03 (19) | C43—C44—C45—C46 | 0.2 (3) |
C13—C14—C15—C16 | 1.4 (3) | C44—C45—C46—C41 | −1.0 (3) |
C14—C15—C16—C11 | 0.9 (3) | C42—C41—C46—C45 | 0.9 (3) |
C12—C11—C16—C15 | −2.5 (3) | C8—C41—C46—C45 | −179.67 (16) |
C2—C11—C16—C15 | 176.11 (17) |
Cg2 and Cg5 are the centroids of the N3/N4/C5–C8 and C31–C36 rings, respectively. |
D—H···A | D—H | H···A | D···A | D—H···A |
C33—H33···F2i | 0.95 | 2.49 | 3.204 (2) | 132 |
C15—H15···Cg5ii | 0.95 | 2.92 | 3.751 (2) | 147 |
C23—H23···Cg2iii | 0.95 | 2.98 | 3.7690 (19) | 141 |
Symmetry codes: (i) x−1, y+1, z+1; (ii) x, y, z−1; (iii) −x+1, −y+1, −z. |
Experimental details
Crystal data | |
Chemical formula | C32H18F4N4S2 |
Mr | 598.62 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 200 |
a, b, c (Å) | 9.3371 (2), 11.3093 (3), 13.1984 (3) |
α, β, γ (°) | 102.364 (1), 93.094 (1), 94.010 (1) |
V (Å3) | 1354.64 (6) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.26 |
Crystal size (mm) | 0.50 × 0.42 × 0.29 |
Data collection | |
Diffractometer | Bruker APEXII CCD diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2008) |
Tmin, Tmax | 0.899, 1.000 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 22345, 6451, 5761 |
Rint | 0.019 |
(sin θ/λ)max (Å−1) | 0.661 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.043, 0.106, 1.08 |
No. of reflections | 6451 |
No. of parameters | 379 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.31, −0.32 |
Computer programs: APEX2 (Bruker, 2010), SAINT (Bruker, 2010), SHELXS97 (Sheldrick, 2008), ORTEP-3 (Farrugia, 1997) and Mercury (Macrae et al., 2008), SHELXL97 (Sheldrick, 2008) and PLATON (Spek, 2009).
Cg2 and Cg5 are the centroids of the N3/N4/C5–C8 and C31–C36 rings, respectively. |
D—H···A | D—H | H···A | D···A | D—H···A |
C33—H33···F2i | 0.95 | 2.49 | 3.204 (2) | 132 |
C15—H15···Cg5ii | 0.95 | 2.92 | 3.751 (2) | 147 |
C23—H23···Cg2iii | 0.95 | 2.98 | 3.7690 (19) | 141 |
Symmetry codes: (i) x−1, y+1, z+1; (ii) x, y, z−1; (iii) −x+1, −y+1, −z. |
Acknowledgements
BN thanks the UGC for financial assistance through the SAP and BSR one-time grants for the purchase of chemicals. SS thanks Mangalore University for the research facilities.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
In view of the biological importance of pyrimidines and in continuation of our work on the synthesis of various derivatives of 4,4'-difluorochalcone (Samshuddin et al., 2011; Fun et al., 2010; Jasinski et al., 2010; Baktır et al., 2011), we have treated the 4,4'-difluorochalcone with thiourea. Instead of obtaining the expected thio pyrimidine, its dimerization product was obtained whose molecular and crystal structure is reported herein.
The S–S bond length was found at 2.0156 (6) Å and the S–S–Car bond angles were measured at 104.74 (6)° and 105.41 (5). These metrical parameters are in good agreement with values observed for comparable structures whose crystallographic data has been deposited with the Cambridge Structural Database (Allen, 2002): for 311 comparable structures, a distance range of 2.007–2.237 Å (e.s.d. = 0.021 Å) and an angle range of 96.89–107.54 ° (e.s.d. = 2.1 °) is apparent. The least-squares planes defined by the carbon atoms of the para-fluorophenyl groups enclose angles of 4.00 (8)° and 5.44 (8)° as well as 18.69 (8)° and 26.60 (8)°, respectively, with the plane of the aromatic moiety they are bonded to (Fig. 1–3).
In the crystal, C–H···F contacts can be observed whose range falls by more than 0.1 Å below the sum of van der Waals radii of the H and F atoms. These are supported by one of the hydrogen atoms of a para-fluorophenyl moiety and connect the molecules to chains along [1 -1 -1]. In terms of graph-set analysis (Etter et al., 1990; Bernstein et al., 1995), these contacts necessitate a C(17) descriptor on the unitary level. In addition, there are C–H···π as well as C–F···π interactions (Table 1). The planar 4,6-(4-fluorophenyl)pyrimidine groups are involved in π–π stacking interactions via their fluorophenyl groups [centrod-centroid distances of 3.8556 (11) and 3.9284 (11) Å] that assemble the molecules into columns exteded along the x axis (Fig. 4).
The packing of the title compound in the crystal structure is shown in Figure 5.