organic compounds
2-[(2,4,4,6,6-Pentachloro-1,3,5,2λ5,4λ5,6λ5-triazatriphosphinin-2-yl)azanidyl]pyridinium
aDepartment of Chemistry, College of Education Samarra, University of Tikrit, Tikrit 43001, Iraq, bSchool of Chemical Sciences, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia, and cX-ray Crystallography Unit, School of Physics, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia
*Correspondence e-mail: hkfun@usm.my
The title compound, C5H5Cl5N5P3, crystallizes as a zwitterion in which the pyridine N atom is protonated. An S(6) ring motif is formed via an intramolecular C—H⋯N hydrogen bond. The triazatriphosphinine ring adopts an with one N atom displaced by 0.145 (1) Å from the other atoms. In the crystal, N—H⋯N and C—H⋯N hydrogen bonds link the molecules into centrosymmetric dimers containing one R22(7) ring motif and two R22(8) ring motifs.
Related literature
For background to the reactions of hexachlorocyclotriphosphazene, see: Polder & Wagner (1976). For a related structure, see: Coles et al. (2007). For ring conformations, see: Cremer & Pople (1975). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2009); cell SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009).
Supporting information
10.1107/S160053681200013X/hb6587sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S160053681200013X/hb6587Isup2.hkl
Supporting information file. DOI: 10.1107/S160053681200013X/hb6587Isup3.cml
Hexachlorocyclotriphosphazene (0.5 g, 0.07 mol), 2-aminopyridine (0.26 g, 0.14 mol) and triethyl amine (0.14 g, 0.07 mol) were stirred in acetone at -80°C in liquid nitrogen bath for 5 h under anhydrous conditions. The obtained triethylammoniumchloride was filtered off under nitrogen and washed with fresh acetone and the solvent reduced to the minimum. Further, 10 ml of dried acetone was added the yield of the title product after deep freezing crystalization was about 60–66%. Colourless blocks were obtained by the slow evaporation of solvent at freezing temperature of acetone. M.p.: 455 K.
The N-bound hydrogen atom was located from the difference Fourier map and was fixed at their found positions with a riding model with Uiso(H) = 1.2 Ueq(N) [N–H= 0.8354 Å]. The remaining hydrogen atoms were positioned geometrically and were refined with a riding model with Uiso(H) = 1.2 Ueq(C) [C–H = 0.93 Å]. Four outliners were omitted for the final
3 16 4, 3 19 6, -3 16 7 and -3 19 9.Data collection: APEX2 (Bruker, 2009); cell
SAINT (Bruker, 2009); data reduction: SAINT (Bruker, 2009); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).C5H5Cl5N5P3 | F(000) = 800 |
Mr = 405.30 | Dx = 1.915 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 9860 reflections |
a = 8.8677 (1) Å | θ = 2.4–32.6° |
b = 14.7225 (2) Å | µ = 1.36 mm−1 |
c = 12.3564 (2) Å | T = 100 K |
β = 119.355 (1)° | Block, colourless |
V = 1406.05 (3) Å3 | 0.59 × 0.38 × 0.36 mm |
Z = 4 |
Bruker SMART APEXII CCD diffractometer | 5116 independent reflections |
Radiation source: fine-focus sealed tube | 4806 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.017 |
ϕ and ω scans | θmax = 32.6°, θmin = 2.3° |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | h = −11→13 |
Tmin = 0.499, Tmax = 0.640 | k = −22→19 |
19432 measured reflections | l = −18→18 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.023 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.061 | H-atom parameters constrained |
S = 1.09 | w = 1/[σ2(Fo2) + (0.0211P)2 + 1.0751P] where P = (Fo2 + 2Fc2)/3 |
5116 reflections | (Δ/σ)max = 0.001 |
163 parameters | Δρmax = 0.54 e Å−3 |
0 restraints | Δρmin = −0.39 e Å−3 |
C5H5Cl5N5P3 | V = 1406.05 (3) Å3 |
Mr = 405.30 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 8.8677 (1) Å | µ = 1.36 mm−1 |
b = 14.7225 (2) Å | T = 100 K |
c = 12.3564 (2) Å | 0.59 × 0.38 × 0.36 mm |
β = 119.355 (1)° |
Bruker SMART APEXII CCD diffractometer | 5116 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | 4806 reflections with I > 2σ(I) |
Tmin = 0.499, Tmax = 0.640 | Rint = 0.017 |
19432 measured reflections |
R[F2 > 2σ(F2)] = 0.023 | 0 restraints |
wR(F2) = 0.061 | H-atom parameters constrained |
S = 1.09 | Δρmax = 0.54 e Å−3 |
5116 reflections | Δρmin = −0.39 e Å−3 |
163 parameters |
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Cl1 | 1.37616 (5) | 0.29414 (2) | 0.46163 (3) | 0.02552 (7) | |
Cl2 | 1.44578 (4) | 0.19325 (3) | 0.27089 (3) | 0.02419 (7) | |
Cl3 | 0.89064 (4) | 0.22782 (2) | −0.05598 (3) | 0.02220 (7) | |
Cl4 | 0.77111 (4) | 0.35825 (2) | 0.08438 (3) | 0.02138 (6) | |
Cl5 | 0.99461 (4) | −0.00326 (2) | 0.13895 (3) | 0.01986 (6) | |
P1 | 1.25273 (4) | 0.22143 (2) | 0.30552 (3) | 0.01580 (6) | |
P2 | 0.92671 (4) | 0.25229 (2) | 0.11553 (3) | 0.01506 (6) | |
P3 | 0.99248 (4) | 0.09616 (2) | 0.25490 (3) | 0.01336 (6) | |
N1 | 1.18802 (13) | 0.13083 (8) | 0.33652 (9) | 0.01774 (19) | |
N2 | 1.12016 (15) | 0.28591 (8) | 0.19854 (10) | 0.0216 (2) | |
N3 | 0.85908 (13) | 0.17106 (8) | 0.16243 (9) | 0.01651 (18) | |
N4 | 0.93798 (13) | 0.04813 (7) | 0.34645 (9) | 0.01398 (17) | |
N5 | 0.75893 (13) | −0.03097 (7) | 0.39730 (9) | 0.01419 (17) | |
H1 | 0.8457 | −0.0360 | 0.4677 | 0.017* | |
C1 | 0.78001 (15) | 0.01276 (8) | 0.30878 (10) | 0.01275 (18) | |
C2 | 0.63220 (16) | 0.01682 (9) | 0.18857 (10) | 0.0171 (2) | |
H2A | 0.6394 | 0.0459 | 0.1244 | 0.021* | |
C3 | 0.47895 (16) | −0.02188 (10) | 0.16644 (11) | 0.0200 (2) | |
H3A | 0.3833 | −0.0190 | 0.0873 | 0.024* | |
C4 | 0.46472 (16) | −0.06569 (10) | 0.26157 (11) | 0.0212 (2) | |
H4A | 0.3608 | −0.0916 | 0.2469 | 0.025* | |
C5 | 0.60793 (16) | −0.06919 (9) | 0.37649 (11) | 0.0190 (2) | |
H5A | 0.6018 | −0.0981 | 0.4412 | 0.023* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cl1 | 0.02946 (16) | 0.02404 (16) | 0.01697 (12) | −0.00508 (12) | 0.00667 (11) | −0.00396 (11) |
Cl2 | 0.02044 (14) | 0.03211 (18) | 0.02312 (13) | −0.00176 (12) | 0.01309 (11) | 0.00253 (12) |
Cl3 | 0.02719 (15) | 0.02464 (15) | 0.01649 (12) | −0.00050 (12) | 0.01203 (11) | 0.00132 (10) |
Cl4 | 0.02328 (14) | 0.01568 (13) | 0.02180 (13) | 0.00245 (10) | 0.00843 (11) | 0.00085 (10) |
Cl5 | 0.02308 (14) | 0.02248 (15) | 0.01536 (11) | 0.00251 (11) | 0.01046 (10) | −0.00064 (10) |
P1 | 0.01431 (13) | 0.01830 (15) | 0.01237 (12) | −0.00312 (11) | 0.00467 (10) | 0.00161 (10) |
P2 | 0.01528 (13) | 0.01473 (14) | 0.01295 (12) | −0.00074 (10) | 0.00522 (10) | 0.00284 (10) |
P3 | 0.01322 (12) | 0.01484 (14) | 0.01122 (11) | −0.00054 (10) | 0.00537 (9) | 0.00243 (9) |
N1 | 0.0139 (4) | 0.0200 (5) | 0.0156 (4) | −0.0022 (4) | 0.0043 (3) | 0.0049 (4) |
N2 | 0.0172 (5) | 0.0210 (5) | 0.0194 (4) | −0.0042 (4) | 0.0035 (4) | 0.0070 (4) |
N3 | 0.0144 (4) | 0.0170 (5) | 0.0160 (4) | 0.0001 (4) | 0.0058 (3) | 0.0054 (3) |
N4 | 0.0145 (4) | 0.0157 (4) | 0.0117 (4) | −0.0018 (3) | 0.0063 (3) | 0.0015 (3) |
N5 | 0.0137 (4) | 0.0160 (5) | 0.0116 (4) | −0.0016 (3) | 0.0053 (3) | 0.0008 (3) |
C1 | 0.0149 (5) | 0.0120 (5) | 0.0117 (4) | 0.0001 (4) | 0.0067 (4) | −0.0003 (3) |
C2 | 0.0157 (5) | 0.0227 (6) | 0.0115 (4) | −0.0004 (4) | 0.0055 (4) | 0.0017 (4) |
C3 | 0.0157 (5) | 0.0275 (6) | 0.0135 (4) | −0.0016 (5) | 0.0045 (4) | 0.0007 (4) |
C4 | 0.0156 (5) | 0.0282 (7) | 0.0172 (5) | −0.0055 (5) | 0.0059 (4) | 0.0005 (4) |
C5 | 0.0172 (5) | 0.0228 (6) | 0.0162 (5) | −0.0041 (4) | 0.0075 (4) | 0.0028 (4) |
Cl1—P1 | 1.9987 (4) | N4—C1 | 1.3456 (15) |
Cl2—P1 | 2.0011 (5) | N5—C5 | 1.3558 (16) |
Cl3—P2 | 2.0146 (4) | N5—C1 | 1.3589 (14) |
Cl4—P2 | 1.9912 (5) | N5—H1 | 0.8354 |
Cl5—P3 | 2.0548 (4) | C1—C2 | 1.4209 (15) |
P1—N1 | 1.5719 (11) | C2—C3 | 1.3718 (18) |
P1—N2 | 1.5834 (11) | C2—H2A | 0.9300 |
P2—N3 | 1.5705 (11) | C3—C4 | 1.3996 (18) |
P2—N2 | 1.5858 (11) | C3—H3A | 0.9300 |
P3—N4 | 1.5967 (10) | C4—C5 | 1.3652 (17) |
P3—N1 | 1.6031 (11) | C4—H4A | 0.9300 |
P3—N3 | 1.6111 (11) | C5—H5A | 0.9300 |
N1—P1—N2 | 120.13 (6) | P2—N3—P3 | 120.16 (7) |
N1—P1—Cl1 | 108.18 (4) | C1—N4—P3 | 123.48 (8) |
N2—P1—Cl1 | 108.41 (5) | C5—N5—C1 | 123.83 (10) |
N1—P1—Cl2 | 109.20 (5) | C5—N5—H1 | 118.7 |
N2—P1—Cl2 | 107.98 (5) | C1—N5—H1 | 117.4 |
Cl1—P1—Cl2 | 101.32 (2) | N4—C1—N5 | 115.82 (10) |
N3—P2—N2 | 119.12 (6) | N4—C1—C2 | 128.01 (10) |
N3—P2—Cl4 | 108.31 (4) | N5—C1—C2 | 116.17 (10) |
N2—P2—Cl4 | 107.93 (5) | C3—C2—C1 | 120.46 (11) |
N3—P2—Cl3 | 111.07 (4) | C3—C2—H2A | 119.8 |
N2—P2—Cl3 | 107.45 (5) | C1—C2—H2A | 119.8 |
Cl4—P2—Cl3 | 101.487 (19) | C2—C3—C4 | 120.82 (11) |
N4—P3—N1 | 107.76 (5) | C2—C3—H3A | 119.6 |
N4—P3—N3 | 115.69 (6) | C4—C3—H3A | 119.6 |
N1—P3—N3 | 114.83 (6) | C5—C4—C3 | 118.04 (12) |
N4—P3—Cl5 | 106.73 (4) | C5—C4—H4A | 121.0 |
N1—P3—Cl5 | 106.78 (5) | C3—C4—H4A | 121.0 |
N3—P3—Cl5 | 104.34 (4) | N5—C5—C4 | 120.68 (11) |
P1—N1—P3 | 121.89 (7) | N5—C5—H5A | 119.7 |
P1—N2—P2 | 118.55 (7) | C4—C5—H5A | 119.7 |
N2—P1—N1—P3 | 5.48 (12) | N1—P3—N3—P2 | 24.81 (10) |
Cl1—P1—N1—P3 | 130.57 (7) | Cl5—P3—N3—P2 | −91.71 (7) |
Cl2—P1—N1—P3 | −119.97 (7) | N1—P3—N4—C1 | 178.60 (10) |
N4—P3—N1—P1 | −144.81 (8) | N3—P3—N4—C1 | 48.55 (12) |
N3—P3—N1—P1 | −14.28 (11) | Cl5—P3—N4—C1 | −67.03 (10) |
Cl5—P3—N1—P1 | 100.84 (8) | P3—N4—C1—N5 | 175.77 (9) |
N1—P1—N2—P2 | −6.08 (12) | P3—N4—C1—C2 | −5.33 (18) |
Cl1—P1—N2—P2 | −131.06 (7) | C5—N5—C1—N4 | 178.77 (12) |
Cl2—P1—N2—P2 | 119.94 (7) | C5—N5—C1—C2 | −0.27 (18) |
N3—P2—N2—P1 | 16.53 (12) | N4—C1—C2—C3 | −178.84 (13) |
Cl4—P2—N2—P1 | 140.46 (7) | N5—C1—C2—C3 | 0.06 (18) |
Cl3—P2—N2—P1 | −110.81 (8) | C1—C2—C3—C4 | 0.3 (2) |
N2—P2—N3—P3 | −26.66 (11) | C2—C3—C4—C5 | −0.4 (2) |
Cl4—P2—N3—P3 | −150.41 (6) | C1—N5—C5—C4 | 0.1 (2) |
Cl3—P2—N3—P3 | 98.96 (7) | C3—C4—C5—N5 | 0.2 (2) |
N4—P3—N3—P2 | 151.37 (7) |
D—H···A | D—H | H···A | D···A | D—H···A |
N5—H1···N4i | 0.84 | 2.16 | 2.9949 (14) | 177 |
C2—H2A···N3 | 0.93 | 2.55 | 3.1538 (19) | 123 |
C5—H5A···N1i | 0.93 | 2.50 | 3.2220 (16) | 135 |
Symmetry code: (i) −x+2, −y, −z+1. |
Experimental details
Crystal data | |
Chemical formula | C5H5Cl5N5P3 |
Mr | 405.30 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 100 |
a, b, c (Å) | 8.8677 (1), 14.7225 (2), 12.3564 (2) |
β (°) | 119.355 (1) |
V (Å3) | 1406.05 (3) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 1.36 |
Crystal size (mm) | 0.59 × 0.38 × 0.36 |
Data collection | |
Diffractometer | Bruker SMART APEXII CCD diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2009) |
Tmin, Tmax | 0.499, 0.640 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 19432, 5116, 4806 |
Rint | 0.017 |
(sin θ/λ)max (Å−1) | 0.759 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.023, 0.061, 1.09 |
No. of reflections | 5116 |
No. of parameters | 163 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.54, −0.39 |
Computer programs: APEX2 (Bruker, 2009), SAINT (Bruker, 2009), SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
N5—H1···N4i | 0.84 | 2.16 | 2.9949 (14) | 177 |
C2—H2A···N3 | 0.93 | 2.55 | 3.1538 (19) | 123 |
C5—H5A···N1i | 0.93 | 2.50 | 3.2220 (16) | 135 |
Symmetry code: (i) −x+2, −y, −z+1. |
Acknowledgements
We thank the University of Tikrit for research leave (for SSA) and Universiti Sains Malaysia (USM) for the Research University Fund (1001/PKIMIA/811157) and RU grant (1001/PKIMIA/813023) (to RAH and ZZH). HKF and WSL thank USM for the Research University Grant (1001/PFIZIK/811160). WSL also thanks the Malaysian Government and USM for the award of the post of Research Officer under the Research University Grant (1001/PFIZIK/811160).
References
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Hexachlorocyclotriphosphazene is an inorganic six-membered cyclic compound consisting of alternating phosphorous and nitrogen atoms. It can also be considered as a trimer of azaphosphoryldichloride (NPCl2), which can be readily formed by the reaction of phosphorous pentachloride and ammonium chloride in chlorobenzene. The results of the reaction of phosphazene derivatives with nucleophile reagent strongly depend on reaction conditions whereas a series of various substitution derivatives can be formed (e.g. Polder & Wagner, 1976).
The title compound (Fig. 1), crystallizes as a zwitterion in which the pyridine N atom is protonated. An S(6) ring motif is formed via an intramolecular C2—H2A···N3 hydrogen bond (Table 1). The triazatriphosphinine ring (P1/N2/P2/N3/P3/N1) adopts an envelope conformation with the puckering parameters (Cremer & Pople, 1975), Q = 0.2087 Å; Θ = 138.0 (2)°; ϕ = 3.7 (4)° and it is comparable to a related stucture (Coles et al., 2007). In the crystal (Fig. 2), N5—H1···N4 and C5—H5A···N1 hydrogen bonds (Table 1) link the molecules to form one R22(7) ring motif and two R22(8) ring motifs.