organic compounds
Ethyl 2-(4-carboxybenzylidene)-7-methyl-3-oxo-5-phenyl-2,3-dihydro-5H-thiazolo[3,2-a]pyrimidine-6-carboxylate–N,N-dimethylformamide (1/1)
aDepartment of Chemistry, KNS Institute of Technology, Bangalore 560 064, India, and bDepartment of Chemistry, Dr. Ambedkar Institute of Technology, Bangalore 560 056, India
*Correspondence e-mail: 'bheemarajuv54@gmail.com
In the title compound, C24H20N2O5S·C3H7NO, a benzene ring is positioned axially to the pyrimidine ring, which adopts a twist-boat conformation, and is inclined to its mean plane by 85.36 (7)°. In the crystal, intermolecular C—H⋯O interactions result in centrosymmetric head-to-head dimers with an R22(14) graph-set motif along the b axis. Pairs of C—H⋯O and O—H⋯O hydrogen bonds form centrosymmetric head-to-head dimers about inversion centres, corresponding to an R22(7) graph-set motif along the a axis.
Related literature
For pharmacological properties of pyrimidine derivatives and general background, see: Alam et al. (2010). For a related structure, see: Jotani et al. (2010). For graph-set motifs, see: Bernstein et al. (1995). For puckering parameters, see: Cremer & Pople (1975).
Experimental
Crystal data
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Refinement
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Data collection: SMART (Bruker, 1998); cell SAINT-Plus (Bruker, 1998); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997) and CAMERON (Watkin et al., 1996); software used to prepare material for publication: WinGX (Farrugia, 1999).
Supporting information
10.1107/S1600536812000050/pv2495sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536812000050/pv2495Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536812000050/pv2495Isup3.cml
A mixture of 5-phenyl-6-methyl-2-thioxo-1,2,3,4-tetrahydro -pyrimidine-5-carboxylic acid ethyl ester (0.01 mol), chloroacetic acid (0.01 mol), 4-carboxy benzaldehyde (0.01 mol) and sodium acetate (1.5 g) in a mixture of glacial acetic acid and acetic anhydride (25 ml, 1:1) was refluxed for 8–10 h. The reaction mixture was concentrated and the solid thus obtained was filtered and recrystallized from ethyl acetate to get the title compound (78% yield, m.p. 427–428 K). The compound was recrystallized by slow evaporation of ethyl acetate-ethanol (6:4) solution, yielding pale yellow single crystals suitable for X-ray diffraction.
The H atoms were placed at calculated positions in the riding model approximation with O—H = 0.82 Å and C—H = 0.93, 0.96, 0.97 and 0.98 Å, for aryl, methyl, methylene and methyne type H-atoms, respectively, with Uiso(H) = 1.5Ueq(C-methyl) or 1.2Ueq(O/C non-methyl).
Data collection: SMART (Bruker, 1998); cell
SAINT-Plus (Bruker, 1998); data reduction: SAINT-Plus (Bruker, 1998); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997) and CAMERON (Watkin et al., 1996); software used to prepare material for publication: WinGX (Farrugia, 1999).C24H20N2O5S·C3H7NO | Z = 2 |
Mr = 521.58 | F(000) = 548 |
Triclinic, P1 | Dx = 1.306 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 8.4146 (4) Å | Cell parameters from 5788 reflections |
b = 12.0699 (5) Å | θ = 1.6–27.0° |
c = 14.0185 (6) Å | µ = 0.17 mm−1 |
α = 71.799 (2)° | T = 296 K |
β = 78.753 (2)° | Block, yellow |
γ = 86.488 (2)° | 0.20 × 0.20 × 0.15 mm |
V = 1326.56 (10) Å3 |
Bruker SMART APEX CCD detector diffractometer | 5788 independent reflections |
Radiation source: fine-focus sealed tube | 3560 reflections with I > 2σ(I)' |
Graphite monochromator | Rint = 0.033 |
ω scans | θmax = 27.0°, θmin = 1.6° |
Absorption correction: multi-scan (SADABS; Bruker, 1998) | h = −10→8 |
Tmin = 0.967, Tmax = 0.975 | k = −15→14 |
23685 measured reflections | l = −17→17 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.058 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.178 | H-atom parameters constrained |
S = 1.04 | w = 1/[σ2(Fo2) + (0.103P)2] where P = (Fo2 + 2Fc2)/3 |
5788 reflections | (Δ/σ)max < 0.001 |
339 parameters | Δρmax = 0.39 e Å−3 |
0 restraints | Δρmin = −0.29 e Å−3 |
C24H20N2O5S·C3H7NO | γ = 86.488 (2)° |
Mr = 521.58 | V = 1326.56 (10) Å3 |
Triclinic, P1 | Z = 2 |
a = 8.4146 (4) Å | Mo Kα radiation |
b = 12.0699 (5) Å | µ = 0.17 mm−1 |
c = 14.0185 (6) Å | T = 296 K |
α = 71.799 (2)° | 0.20 × 0.20 × 0.15 mm |
β = 78.753 (2)° |
Bruker SMART APEX CCD detector diffractometer | 5788 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 1998) | 3560 reflections with I > 2σ(I)' |
Tmin = 0.967, Tmax = 0.975 | Rint = 0.033 |
23685 measured reflections |
R[F2 > 2σ(F2)] = 0.058 | 0 restraints |
wR(F2) = 0.178 | H-atom parameters constrained |
S = 1.04 | Δρmax = 0.39 e Å−3 |
5788 reflections | Δρmin = −0.29 e Å−3 |
339 parameters |
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
N22 | 0.6187 (3) | 0.93566 (19) | 0.32137 (16) | 0.0806 (6) | |
C81 | 0.4744 (4) | 0.9872 (3) | 0.3273 (2) | 0.0860 (8) | |
H81 | 0.4495 | 1.0414 | 0.2685 | 0.103* | |
C82 | 0.7324 (4) | 0.9640 (3) | 0.2250 (2) | 0.1124 (11) | |
H82A | 0.6825 | 1.0170 | 0.1725 | 0.169* | |
H82B | 0.7631 | 0.8939 | 0.2074 | 0.169* | |
H82C | 0.8270 | 0.9997 | 0.2315 | 0.169* | |
C83 | 0.6722 (5) | 0.8554 (3) | 0.4099 (3) | 0.1303 (14) | |
H83A | 0.6222 | 0.8755 | 0.4699 | 0.195* | |
H83B | 0.7878 | 0.8600 | 0.4014 | 0.195* | |
H83C | 0.6420 | 0.7774 | 0.4170 | 0.195* | |
O11 | 0.3700 (2) | 0.96682 (18) | 0.40786 (15) | 0.1004 (6) | |
S1 | 0.30622 (7) | 0.34995 (5) | 0.35943 (4) | 0.0618 (2) | |
N1 | 0.1227 (2) | 0.48407 (14) | 0.24302 (12) | 0.0505 (4) | |
N2 | 0.0013 (2) | 0.40960 (16) | 0.41686 (12) | 0.0610 (5) | |
O1 | −0.29300 (18) | 0.64562 (14) | 0.17146 (12) | 0.0718 (5) | |
O2 | −0.4299 (2) | 0.5986 (2) | 0.33005 (16) | 0.1173 (8) | |
O3 | 0.27644 (19) | 0.52114 (14) | 0.08332 (11) | 0.0702 (5) | |
O5 | 1.2299 (2) | 0.16084 (16) | 0.22813 (13) | 0.0837 (5) | |
O4 | 1.0939 (2) | 0.07417 (16) | 0.38392 (13) | 0.0839 (5) | |
H4 | 1.1835 | 0.0469 | 0.3928 | 0.126* | |
C1 | 0.5294 (3) | 0.38515 (19) | 0.17748 (16) | 0.0588 (6) | |
H1 | 0.5440 | 0.4212 | 0.1073 | 0.071* | |
C2 | 0.3822 (3) | 0.40097 (18) | 0.22858 (15) | 0.0538 (5) | |
C3 | 0.2609 (3) | 0.47380 (18) | 0.17423 (15) | 0.0536 (5) | |
C4 | 0.1213 (3) | 0.42052 (18) | 0.34338 (15) | 0.0527 (5) | |
C5 | −0.0051 (2) | 0.56909 (17) | 0.21469 (15) | 0.0514 (5) | |
H5 | −0.0318 | 0.5646 | 0.1510 | 0.062* | |
C6 | −0.1543 (3) | 0.53676 (19) | 0.29785 (16) | 0.0562 (5) | |
C7 | −0.1450 (3) | 0.46191 (19) | 0.39185 (15) | 0.0579 (6) | |
C8 | −0.2833 (3) | 0.4227 (2) | 0.47932 (17) | 0.0775 (7) | |
H8A | −0.2833 | 0.4658 | 0.5264 | 0.116* | |
H8B | −0.2722 | 0.3410 | 0.5135 | 0.116* | |
H8C | −0.3834 | 0.4361 | 0.4543 | 0.116* | |
C9 | −0.3069 (3) | 0.5942 (2) | 0.27206 (18) | 0.0668 (6) | |
C10 | −0.4341 (3) | 0.7095 (2) | 0.1380 (2) | 0.0848 (8) | |
H10A | −0.4629 | 0.7697 | 0.1708 | 0.102* | |
H10B | −0.5257 | 0.6572 | 0.1556 | 0.102* | |
C11 | −0.3925 (5) | 0.7620 (4) | 0.0270 (3) | 0.1493 (17) | |
H11A | −0.2973 | 0.8093 | 0.0103 | 0.224* | |
H11B | −0.4809 | 0.8097 | 0.0030 | 0.224* | |
H11C | −0.3721 | 0.7015 | −0.0049 | 0.224* | |
C12 | 0.6698 (3) | 0.32199 (18) | 0.21211 (15) | 0.0565 (5) | |
C13 | 0.6715 (3) | 0.2478 (2) | 0.31156 (17) | 0.0687 (6) | |
H13 | 0.5766 | 0.2368 | 0.3602 | 0.082* | |
C14 | 0.8092 (3) | 0.1918 (2) | 0.33831 (17) | 0.0662 (6) | |
H14 | 0.8070 | 0.1426 | 0.4045 | 0.079* | |
C15 | 0.9529 (3) | 0.20750 (18) | 0.26740 (16) | 0.0575 (5) | |
C16 | 0.9541 (3) | 0.2815 (2) | 0.16903 (16) | 0.0626 (6) | |
H16 | 1.0498 | 0.2931 | 0.1210 | 0.075* | |
C17 | 0.8164 (3) | 0.3372 (2) | 0.14224 (16) | 0.0631 (6) | |
H17 | 0.8198 | 0.3865 | 0.0760 | 0.076* | |
C18 | 1.1052 (3) | 0.1454 (2) | 0.29103 (18) | 0.0642 (6) | |
C19 | 0.0875 (3) | 0.7233 (2) | 0.2777 (2) | 0.0732 (7) | |
H19 | 0.0673 | 0.6714 | 0.3436 | 0.088* | |
C20 | 0.1494 (4) | 0.8341 (2) | 0.2594 (3) | 0.0925 (9) | |
H20 | 0.1719 | 0.8557 | 0.3136 | 0.111* | |
C21 | 0.1769 (3) | 0.9101 (3) | 0.1647 (3) | 0.0941 (9) | |
H21 | 0.2184 | 0.9836 | 0.1536 | 0.113* | |
C22 | 0.1446 (4) | 0.8801 (2) | 0.0860 (3) | 0.0948 (9) | |
H22 | 0.1636 | 0.9335 | 0.0207 | 0.114* | |
C23 | 0.0835 (3) | 0.7708 (2) | 0.10042 (18) | 0.0736 (7) | |
H123 | 0.0609 | 0.7513 | 0.0453 | 0.088* | |
C24 | 0.0565 (2) | 0.69169 (18) | 0.19627 (16) | 0.0563 (5) |
U11 | U22 | U33 | U12 | U13 | U23 | |
N22 | 0.0713 (15) | 0.0885 (15) | 0.0760 (14) | 0.0075 (11) | −0.0098 (11) | −0.0205 (12) |
C81 | 0.0765 (19) | 0.099 (2) | 0.0758 (18) | 0.0023 (16) | −0.0131 (15) | −0.0185 (15) |
C82 | 0.096 (2) | 0.136 (3) | 0.093 (2) | −0.003 (2) | 0.0108 (18) | −0.035 (2) |
C83 | 0.138 (3) | 0.138 (3) | 0.092 (2) | 0.052 (2) | −0.030 (2) | −0.007 (2) |
O11 | 0.0815 (14) | 0.1229 (17) | 0.0802 (13) | 0.0172 (11) | −0.0075 (11) | −0.0152 (11) |
S1 | 0.0619 (4) | 0.0721 (4) | 0.0442 (3) | 0.0072 (3) | −0.0036 (2) | −0.0126 (3) |
N1 | 0.0504 (10) | 0.0541 (10) | 0.0437 (9) | 0.0008 (8) | −0.0037 (7) | −0.0136 (7) |
N2 | 0.0576 (12) | 0.0769 (13) | 0.0442 (10) | −0.0033 (9) | 0.0006 (8) | −0.0182 (9) |
O1 | 0.0460 (9) | 0.0916 (12) | 0.0690 (10) | 0.0024 (8) | −0.0089 (7) | −0.0137 (8) |
O2 | 0.0598 (12) | 0.172 (2) | 0.0863 (13) | 0.0252 (12) | 0.0123 (10) | −0.0116 (13) |
O3 | 0.0627 (10) | 0.0922 (12) | 0.0420 (8) | 0.0120 (8) | 0.0000 (7) | −0.0091 (8) |
O5 | 0.0639 (11) | 0.1041 (14) | 0.0731 (11) | 0.0089 (9) | −0.0061 (9) | −0.0185 (9) |
O4 | 0.0758 (12) | 0.0851 (12) | 0.0725 (11) | 0.0157 (10) | −0.0111 (9) | −0.0025 (9) |
C1 | 0.0627 (14) | 0.0618 (13) | 0.0480 (11) | 0.0066 (10) | −0.0040 (10) | −0.0163 (10) |
C2 | 0.0579 (13) | 0.0552 (12) | 0.0446 (11) | 0.0009 (10) | −0.0025 (9) | −0.0144 (9) |
C3 | 0.0528 (12) | 0.0596 (13) | 0.0449 (11) | 0.0011 (9) | −0.0006 (9) | −0.0167 (10) |
C4 | 0.0566 (13) | 0.0578 (13) | 0.0428 (11) | −0.0036 (10) | −0.0052 (9) | −0.0162 (9) |
C5 | 0.0454 (11) | 0.0616 (13) | 0.0460 (10) | −0.0023 (9) | −0.0043 (9) | −0.0170 (9) |
C6 | 0.0476 (12) | 0.0684 (14) | 0.0536 (12) | −0.0072 (10) | −0.0014 (9) | −0.0234 (11) |
C7 | 0.0493 (13) | 0.0750 (15) | 0.0512 (12) | −0.0068 (10) | −0.0005 (9) | −0.0260 (11) |
C8 | 0.0581 (15) | 0.111 (2) | 0.0544 (13) | −0.0087 (13) | 0.0049 (11) | −0.0200 (13) |
C9 | 0.0487 (13) | 0.0808 (16) | 0.0644 (14) | −0.0059 (11) | −0.0017 (11) | −0.0171 (12) |
C10 | 0.0514 (15) | 0.0922 (19) | 0.099 (2) | 0.0032 (13) | −0.0153 (13) | −0.0124 (16) |
C11 | 0.096 (3) | 0.213 (4) | 0.095 (2) | 0.045 (3) | −0.021 (2) | 0.009 (3) |
C12 | 0.0574 (13) | 0.0597 (13) | 0.0496 (11) | 0.0056 (10) | −0.0006 (10) | −0.0197 (10) |
C13 | 0.0628 (15) | 0.0707 (15) | 0.0581 (13) | 0.0114 (11) | 0.0076 (11) | −0.0127 (11) |
C14 | 0.0710 (16) | 0.0635 (14) | 0.0541 (13) | 0.0105 (11) | −0.0035 (11) | −0.0111 (11) |
C15 | 0.0604 (14) | 0.0545 (13) | 0.0604 (13) | 0.0045 (10) | −0.0100 (10) | −0.0232 (10) |
C16 | 0.0619 (14) | 0.0734 (15) | 0.0491 (12) | 0.0004 (11) | 0.0002 (10) | −0.0205 (11) |
C17 | 0.0643 (15) | 0.0748 (15) | 0.0456 (11) | 0.0054 (11) | −0.0046 (10) | −0.0161 (10) |
C18 | 0.0657 (16) | 0.0651 (15) | 0.0643 (14) | 0.0028 (11) | −0.0126 (12) | −0.0238 (12) |
C19 | 0.0745 (17) | 0.0701 (16) | 0.0810 (17) | −0.0003 (12) | −0.0282 (13) | −0.0235 (13) |
C20 | 0.094 (2) | 0.0787 (19) | 0.121 (3) | −0.0065 (16) | −0.0330 (19) | −0.0448 (19) |
C21 | 0.079 (2) | 0.0646 (18) | 0.132 (3) | −0.0110 (14) | 0.0014 (18) | −0.0317 (19) |
C22 | 0.101 (2) | 0.0659 (18) | 0.091 (2) | −0.0015 (15) | 0.0207 (17) | −0.0094 (15) |
C23 | 0.0810 (17) | 0.0666 (16) | 0.0605 (14) | −0.0029 (13) | 0.0094 (12) | −0.0148 (12) |
C24 | 0.0385 (11) | 0.0596 (13) | 0.0665 (13) | 0.0034 (9) | −0.0004 (9) | −0.0197 (11) |
N22—C81 | 1.330 (3) | C6—C9 | 1.475 (3) |
N22—C83 | 1.447 (3) | C7—C8 | 1.493 (3) |
N22—C82 | 1.450 (3) | C8—H8A | 0.9600 |
C81—O11 | 1.254 (3) | C8—H8B | 0.9600 |
C81—H81 | 0.9300 | C8—H8C | 0.9600 |
C82—H82A | 0.9600 | C10—C11 | 1.463 (4) |
C82—H82B | 0.9600 | C10—H10A | 0.9700 |
C82—H82C | 0.9600 | C10—H10B | 0.9700 |
C83—H83A | 0.9600 | C11—H11A | 0.9600 |
C83—H83B | 0.9600 | C11—H11B | 0.9600 |
C83—H83C | 0.9600 | C11—H11C | 0.9600 |
S1—C2 | 1.743 (2) | C12—C17 | 1.399 (3) |
S1—C4 | 1.747 (2) | C12—C13 | 1.404 (3) |
N1—C4 | 1.374 (2) | C13—C14 | 1.363 (3) |
N1—C3 | 1.384 (2) | C13—H13 | 0.9300 |
N1—C5 | 1.464 (3) | C14—C15 | 1.388 (3) |
N2—C4 | 1.274 (3) | C14—H14 | 0.9300 |
N2—C7 | 1.404 (3) | C15—C16 | 1.388 (3) |
O1—C9 | 1.336 (3) | C15—C18 | 1.486 (3) |
O1—C10 | 1.451 (3) | C16—C17 | 1.362 (3) |
O2—C9 | 1.194 (3) | C16—H16 | 0.9300 |
O3—C3 | 1.207 (2) | C17—H17 | 0.9300 |
O5—C18 | 1.214 (3) | C19—C24 | 1.384 (3) |
O4—C18 | 1.306 (3) | C19—C20 | 1.395 (3) |
O4—H4 | 0.8200 | C19—H19 | 0.9300 |
C1—C2 | 1.339 (3) | C20—C21 | 1.343 (4) |
C1—C12 | 1.447 (3) | C20—H20 | 0.9300 |
C1—H1 | 0.9300 | C21—C22 | 1.342 (4) |
C2—C3 | 1.473 (3) | C21—H21 | 0.9300 |
C5—C6 | 1.514 (3) | C22—C23 | 1.387 (4) |
C5—C24 | 1.526 (3) | C22—H22 | 0.9300 |
C5—H5 | 0.9800 | C23—C24 | 1.369 (3) |
C6—C7 | 1.359 (3) | C23—H123 | 0.9300 |
C81—N22—C83 | 122.3 (3) | O2—C9—O1 | 121.6 (2) |
C81—N22—C82 | 120.1 (2) | O2—C9—C6 | 127.1 (2) |
C83—N22—C82 | 117.5 (3) | O1—C9—C6 | 111.30 (19) |
O11—C81—N22 | 123.6 (3) | O1—C10—C11 | 107.4 (2) |
O11—C81—H81 | 118.2 | O1—C10—H10A | 110.2 |
N22—C81—H81 | 118.2 | C11—C10—H10A | 110.2 |
N22—C82—H82A | 109.5 | O1—C10—H10B | 110.2 |
N22—C82—H82B | 109.5 | C11—C10—H10B | 110.2 |
H82A—C82—H82B | 109.5 | H10A—C10—H10B | 108.5 |
N22—C82—H82C | 109.5 | C10—C11—H11A | 109.5 |
H82A—C82—H82C | 109.5 | C10—C11—H11B | 109.5 |
H82B—C82—H82C | 109.5 | H11A—C11—H11B | 109.5 |
N22—C83—H83A | 109.5 | C10—C11—H11C | 109.5 |
N22—C83—H83B | 109.5 | H11A—C11—H11C | 109.5 |
H83A—C83—H83B | 109.5 | H11B—C11—H11C | 109.5 |
N22—C83—H83C | 109.5 | C17—C12—C13 | 117.0 (2) |
H83A—C83—H83C | 109.5 | C17—C12—C1 | 117.96 (19) |
H83B—C83—H83C | 109.5 | C13—C12—C1 | 125.00 (19) |
C2—S1—C4 | 91.62 (10) | C14—C13—C12 | 121.4 (2) |
C4—N1—C3 | 115.96 (18) | C14—C13—H13 | 119.3 |
C4—N1—C5 | 120.81 (16) | C12—C13—H13 | 119.3 |
C3—N1—C5 | 122.69 (16) | C13—C14—C15 | 120.5 (2) |
C4—N2—C7 | 116.87 (17) | C13—C14—H14 | 119.8 |
C9—O1—C10 | 115.94 (19) | C15—C14—H14 | 119.8 |
C18—O4—H4 | 109.5 | C16—C15—C14 | 119.0 (2) |
C2—C1—C12 | 131.4 (2) | C16—C15—C18 | 118.1 (2) |
C2—C1—H1 | 114.3 | C14—C15—C18 | 122.9 (2) |
C12—C1—H1 | 114.3 | C17—C16—C15 | 120.5 (2) |
C1—C2—C3 | 120.46 (19) | C17—C16—H16 | 119.7 |
C1—C2—S1 | 128.94 (18) | C15—C16—H16 | 119.7 |
C3—C2—S1 | 110.56 (14) | C16—C17—C12 | 121.5 (2) |
O3—C3—N1 | 123.1 (2) | C16—C17—H17 | 119.2 |
O3—C3—C2 | 126.56 (19) | C12—C17—H17 | 119.2 |
N1—C3—C2 | 110.27 (17) | O5—C18—O4 | 123.2 (2) |
N2—C4—N1 | 125.9 (2) | O5—C18—C15 | 121.9 (2) |
N2—C4—S1 | 122.68 (16) | O4—C18—C15 | 114.9 (2) |
N1—C4—S1 | 111.41 (15) | C24—C19—C20 | 119.0 (3) |
N1—C5—C6 | 108.64 (16) | C24—C19—H19 | 120.5 |
N1—C5—C24 | 109.51 (16) | C20—C19—H19 | 120.5 |
C6—C5—C24 | 113.05 (16) | C21—C20—C19 | 120.8 (3) |
N1—C5—H5 | 108.5 | C21—C20—H20 | 119.6 |
C6—C5—H5 | 108.5 | C19—C20—H20 | 119.6 |
C24—C5—H5 | 108.5 | C22—C21—C20 | 120.2 (3) |
C7—C6—C9 | 122.49 (19) | C22—C21—H21 | 119.9 |
C7—C6—C5 | 121.1 (2) | C20—C21—H21 | 119.9 |
C9—C6—C5 | 116.33 (19) | C21—C22—C23 | 121.0 (3) |
C6—C7—N2 | 122.32 (18) | C21—C22—H22 | 119.5 |
C6—C7—C8 | 126.0 (2) | C23—C22—H22 | 119.5 |
N2—C7—C8 | 111.64 (19) | C24—C23—C22 | 119.6 (3) |
C7—C8—H8A | 109.5 | C24—C23—H123 | 120.2 |
C7—C8—H8B | 109.5 | C22—C23—H123 | 120.2 |
H8A—C8—H8B | 109.5 | C23—C24—C19 | 119.3 (2) |
C7—C8—H8C | 109.5 | C23—C24—C5 | 121.2 (2) |
H8A—C8—H8C | 109.5 | C19—C24—C5 | 119.48 (19) |
H8B—C8—H8C | 109.5 | ||
C83—N22—C81—O11 | −3.7 (5) | C10—O1—C9—O2 | 1.9 (4) |
C82—N22—C81—O11 | 179.8 (3) | C10—O1—C9—C6 | −177.28 (19) |
C12—C1—C2—C3 | 177.9 (2) | C7—C6—C9—O2 | 12.6 (4) |
C12—C1—C2—S1 | 0.5 (4) | C5—C6—C9—O2 | −165.1 (3) |
C4—S1—C2—C1 | 178.1 (2) | C7—C6—C9—O1 | −168.28 (19) |
C4—S1—C2—C3 | 0.47 (15) | C5—C6—C9—O1 | 14.0 (3) |
C4—N1—C3—O3 | 177.18 (19) | C9—O1—C10—C11 | 178.0 (3) |
C5—N1—C3—O3 | −11.1 (3) | C2—C1—C12—C17 | −169.5 (2) |
C4—N1—C3—C2 | −4.2 (2) | C2—C1—C12—C13 | 9.1 (4) |
C5—N1—C3—C2 | 167.44 (16) | C17—C12—C13—C14 | −1.0 (4) |
C1—C2—C3—O3 | 2.6 (3) | C1—C12—C13—C14 | −179.7 (2) |
S1—C2—C3—O3 | −179.55 (19) | C12—C13—C14—C15 | 0.5 (4) |
C1—C2—C3—N1 | −175.93 (19) | C13—C14—C15—C16 | 0.2 (4) |
S1—C2—C3—N1 | 1.9 (2) | C13—C14—C15—C18 | −177.7 (2) |
C7—N2—C4—N1 | 3.8 (3) | C14—C15—C16—C17 | −0.4 (3) |
C7—N2—C4—S1 | −174.05 (14) | C18—C15—C16—C17 | 177.6 (2) |
C3—N1—C4—N2 | −173.4 (2) | C15—C16—C17—C12 | −0.1 (4) |
C5—N1—C4—N2 | 14.7 (3) | C13—C12—C17—C16 | 0.8 (3) |
C3—N1—C4—S1 | 4.6 (2) | C1—C12—C17—C16 | 179.59 (19) |
C5—N1—C4—S1 | −167.20 (14) | C16—C15—C18—O5 | 2.5 (3) |
C2—S1—C4—N2 | 175.35 (19) | C14—C15—C18—O5 | −179.6 (2) |
C2—S1—C4—N1 | −2.79 (15) | C16—C15—C18—O4 | −177.68 (19) |
C4—N1—C5—C6 | −23.1 (2) | C14—C15—C18—O4 | 0.2 (3) |
C3—N1—C5—C6 | 165.58 (17) | C24—C19—C20—C21 | 0.9 (4) |
C4—N1—C5—C24 | 100.8 (2) | C19—C20—C21—C22 | 0.1 (5) |
C3—N1—C5—C24 | −70.5 (2) | C20—C21—C22—C23 | −0.3 (5) |
N1—C5—C6—C7 | 16.6 (3) | C21—C22—C23—C24 | −0.5 (4) |
C24—C5—C6—C7 | −105.2 (2) | C22—C23—C24—C19 | 1.5 (4) |
N1—C5—C6—C9 | −165.65 (17) | C22—C23—C24—C5 | −177.9 (2) |
C24—C5—C6—C9 | 72.6 (2) | C20—C19—C24—C23 | −1.6 (4) |
C9—C6—C7—N2 | −178.39 (19) | C20—C19—C24—C5 | 177.7 (2) |
C5—C6—C7—N2 | −0.8 (3) | N1—C5—C24—C23 | 111.4 (2) |
C9—C6—C7—C8 | 3.0 (4) | C6—C5—C24—C23 | −127.4 (2) |
C5—C6—C7—C8 | −179.4 (2) | N1—C5—C24—C19 | −67.9 (2) |
C4—N2—C7—C6 | −10.7 (3) | C6—C5—C24—C19 | 53.3 (3) |
C4—N2—C7—C8 | 168.12 (19) |
D—H···A | D—H | H···A | D···A | D—H···A |
C81—H81···O5i | 0.93 | 2.32 | 3.053 (3) | 135 |
O4—H4···O11ii | 0.82 | 1.81 | 2.618 (3) | 170 |
C17—H17···O3iii | 0.93 | 2.43 | 3.310 (3) | 157 |
Symmetry codes: (i) x−1, y+1, z; (ii) x+1, y−1, z; (iii) −x+1, −y+1, −z. |
Experimental details
Crystal data | |
Chemical formula | C24H20N2O5S·C3H7NO |
Mr | 521.58 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 296 |
a, b, c (Å) | 8.4146 (4), 12.0699 (5), 14.0185 (6) |
α, β, γ (°) | 71.799 (2), 78.753 (2), 86.488 (2) |
V (Å3) | 1326.56 (10) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.17 |
Crystal size (mm) | 0.20 × 0.20 × 0.15 |
Data collection | |
Diffractometer | Bruker SMART APEX CCD detector diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 1998) |
Tmin, Tmax | 0.967, 0.975 |
No. of measured, independent and observed [I > 2σ(I)'] reflections | 23685, 5788, 3560 |
Rint | 0.033 |
(sin θ/λ)max (Å−1) | 0.639 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.058, 0.178, 1.04 |
No. of reflections | 5788 |
No. of parameters | 339 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.39, −0.29 |
Computer programs: SMART (Bruker, 1998), SAINT-Plus (Bruker, 1998), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 (Farrugia, 1997) and CAMERON (Watkin et al., 1996), WinGX (Farrugia, 1999).
D—H···A | D—H | H···A | D···A | D—H···A |
C81—H81···O5i | 0.930 | 2.320 | 3.053 (3) | 135 |
O4—H4···O11ii | 0.820 | 1.805 | 2.618 (3) | 170 |
C17—H17···O3iii | 0.930 | 2.434 | 3.310 (3) | 157 |
Symmetry codes: (i) x−1, y+1, z; (ii) x+1, y−1, z; (iii) −x+1, −y+1, −z. |
Acknowledgements
NAB is thankful to the KNS Institute of Technology for all the encouragement.
References
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Pyrimidine derivatives are of interest because of their pharmacological properties (Alam et al., 2010). In the title molecule (Fig. 1), the central pyrimidine ring with a chiral C5 atom is significantly puckered and adopts a conformation which is best described as an intermediate between a boat and a screw boat form as reported in a closely related structure (Jotani et al., 2010). The ring puckering parameters (Cremer & Pople, 1975) for the pyrimidine ring are Q(2) = 0.1985 (2) Å, ϕ(2) = 159.70 (7)° and θ= 70.74 (6)°. A mean planes calculation shows that the atoms C5 and N1 deviate from the mean plane of the remaining ring atoms (N2/C4/C6/C7) by -0.1442 (2) and -0.0949 (2) Å, respectively, indicating that the conformation of the ring is that of a twisted boat. In the molecule, the fused thiazolopyrimidine and the benzene ring (C19—C24) are almost orthogonal with the dihedral angle between these rings being 85.36 (7)°. In the crystal, the carbonyl O3 atom is involved in a hydrogen bonding interaction C17—H17···O3 forming centrosymmetric dimers with R22(14) graph-set motif (Bernstein et al., 1995) along the b-axis. Pairs of C81—H81···O5 and O4—H4···O11 intermolecular interections generate centrosymmetric head-to-head dimers about inversion centres, corresponding to an R22(7) graph-set motif along the a- axis.