organic compounds
2-Amino-3-nitrobenzoic acid
aDepartment of Chemical Science, Faculty of Science, Universiti Tunku Abdul Rahman, Perak Campus, Jalan Universiti, Bandar Barat, 31900 Kampar, Perak, Malaysia, bSchool of Chemical Sciences, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia, and cX-ray Crystallography Unit, School of Physics, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia
*Correspondence e-mail: hkfun@usm.my
The title compound, C7H6N2O4, is approximately planar (r.m.s. deviation = 0.026 Å for the 13 non-H atoms). The molecular structure is stabilized by intramolecular N—H⋯O hydrogen bonds, which generate S(6) ring motifs. In the crystal, molecules are linked via intermolecular N—H⋯O, O—H⋯O and C—H⋯O hydrogen bonds into a three-dimensional network.
Related literature
For general background to the title compound and related structures, see: Win et al. (2010, 2011a,b,c). For standard bond-length data, see: Allen et al. (1987). For hydrogen-bond motifs, see: Bernstein et al. (1995). For the stability of the temperature controller used in the the data collection, see: Cosier & Glazer (1986).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2009); cell SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009).
Supporting information
10.1107/S1600536812002036/qm2050sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536812002036/qm2050Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536812002036/qm2050Isup3.cml
The attempt to prepare organotin(IV) carboxylate complexes by heating under reflux the mixture of 2-amino-3-nitrobenzoic acid (2 mmol) and dimethyltin(IV) oxide (4 mmol) for 4 h in 50 ml of methanol was unsuccessful. The resulting orange solution was filtered and orange crystals were obtained after 2 weeks. Unfortunately, the crystals obtained were found to be the starting material (2-amino-3-nitrobenzoic acid) with the melting point of 482 K.
Atoms H1O4, H1N2 and H2N2 were located in a difference Fourier map and refined freely with O-H = 0.83 (2) Å and N-H = 0.875 (18) and 0.893 (17) Å. The remaining H atoms were positioned geometrically and refined using a riding model with C–H = 0.95 Å and Uiso(H) = 1.2 Ueq(C).
Data collection: APEX2 (Bruker, 2009); cell
SAINT (Bruker, 2009); data reduction: SAINT (Bruker, 2009); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).Fig. 1. The molecular structure of the title compound showing 50% probability displacement ellipsoids for non-H atoms. Intramolecular hydrogen bonds are shown as dashed lines. | |
Fig. 2. The crystal structure of the title compound, viewed along the b axis. H atoms not involved in hydrogen bonds (dashed lines) have been omitted for clarity. |
C7H6N2O4 | F(000) = 376 |
Mr = 182.14 | Dx = 1.635 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 9956 reflections |
a = 9.0231 (3) Å | θ = 2.9–34.8° |
b = 7.4338 (2) Å | µ = 0.14 mm−1 |
c = 11.0392 (4) Å | T = 100 K |
β = 92.114 (1)° | Block, orange |
V = 739.96 (4) Å3 | 0.34 × 0.26 × 0.16 mm |
Z = 4 |
Bruker SMART APEXII CCD area-detector diffractometer | 3247 independent reflections |
Radiation source: fine-focus sealed tube | 2707 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.030 |
ϕ and ω scans | θmax = 35.0°, θmin = 2.3° |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | h = −14→12 |
Tmin = 0.956, Tmax = 0.979 | k = −11→11 |
22297 measured reflections | l = −17→17 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.042 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.121 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.04 | w = 1/[σ2(Fo2) + (0.0662P)2 + 0.1903P] where P = (Fo2 + 2Fc2)/3 |
3247 reflections | (Δ/σ)max = 0.001 |
130 parameters | Δρmax = 0.55 e Å−3 |
0 restraints | Δρmin = −0.33 e Å−3 |
C7H6N2O4 | V = 739.96 (4) Å3 |
Mr = 182.14 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 9.0231 (3) Å | µ = 0.14 mm−1 |
b = 7.4338 (2) Å | T = 100 K |
c = 11.0392 (4) Å | 0.34 × 0.26 × 0.16 mm |
β = 92.114 (1)° |
Bruker SMART APEXII CCD area-detector diffractometer | 3247 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | 2707 reflections with I > 2σ(I) |
Tmin = 0.956, Tmax = 0.979 | Rint = 0.030 |
22297 measured reflections |
R[F2 > 2σ(F2)] = 0.042 | 0 restraints |
wR(F2) = 0.121 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.04 | Δρmax = 0.55 e Å−3 |
3247 reflections | Δρmin = −0.33 e Å−3 |
130 parameters |
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | 1.00882 (10) | 0.85440 (11) | 0.40698 (8) | 0.03096 (19) | |
O2 | 0.99701 (8) | 0.61460 (10) | 0.29827 (6) | 0.02030 (14) | |
O3 | 0.62645 (7) | 0.11784 (9) | 0.43650 (6) | 0.01909 (14) | |
O4 | 0.51199 (8) | 0.18983 (10) | 0.60595 (6) | 0.01981 (14) | |
N1 | 0.95660 (8) | 0.70510 (10) | 0.38522 (6) | 0.01587 (14) | |
N2 | 0.81247 (9) | 0.35687 (11) | 0.34730 (7) | 0.01954 (16) | |
C1 | 0.64687 (9) | 0.51128 (12) | 0.62950 (7) | 0.01552 (15) | |
H1A | 0.5784 | 0.4697 | 0.6865 | 0.019* | |
C2 | 0.71159 (10) | 0.67982 (12) | 0.64617 (8) | 0.01749 (16) | |
H2A | 0.6870 | 0.7528 | 0.7131 | 0.021* | |
C3 | 0.81229 (9) | 0.73922 (12) | 0.56356 (7) | 0.01620 (15) | |
H3A | 0.8579 | 0.8536 | 0.5742 | 0.019* | |
C4 | 0.84738 (9) | 0.63239 (11) | 0.46482 (7) | 0.01390 (14) | |
C5 | 0.78217 (8) | 0.45981 (11) | 0.44292 (7) | 0.01334 (14) | |
C6 | 0.67970 (9) | 0.40152 (11) | 0.53140 (7) | 0.01354 (14) | |
C7 | 0.60572 (9) | 0.22530 (11) | 0.51976 (7) | 0.01458 (15) | |
H1N2 | 0.8797 (19) | 0.393 (2) | 0.2953 (15) | 0.034 (4)* | |
H2N2 | 0.7714 (18) | 0.251 (2) | 0.3400 (14) | 0.033 (4)* | |
H1O4 | 0.471 (2) | 0.092 (3) | 0.5901 (16) | 0.044 (5)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0415 (4) | 0.0181 (3) | 0.0343 (4) | −0.0153 (3) | 0.0144 (3) | −0.0043 (3) |
O2 | 0.0229 (3) | 0.0216 (3) | 0.0168 (3) | −0.0046 (2) | 0.0065 (2) | −0.0007 (2) |
O3 | 0.0214 (3) | 0.0154 (3) | 0.0210 (3) | −0.0059 (2) | 0.0076 (2) | −0.0043 (2) |
O4 | 0.0231 (3) | 0.0189 (3) | 0.0180 (3) | −0.0087 (2) | 0.0080 (2) | −0.0028 (2) |
N1 | 0.0173 (3) | 0.0151 (3) | 0.0153 (3) | −0.0030 (2) | 0.0017 (2) | 0.0023 (2) |
N2 | 0.0221 (3) | 0.0175 (3) | 0.0197 (3) | −0.0068 (3) | 0.0094 (3) | −0.0058 (3) |
C1 | 0.0162 (3) | 0.0166 (3) | 0.0139 (3) | −0.0015 (3) | 0.0025 (2) | −0.0015 (3) |
C2 | 0.0198 (3) | 0.0165 (4) | 0.0163 (3) | −0.0011 (3) | 0.0029 (3) | −0.0036 (3) |
C3 | 0.0179 (3) | 0.0138 (3) | 0.0169 (3) | −0.0013 (3) | 0.0008 (3) | −0.0014 (3) |
C4 | 0.0143 (3) | 0.0133 (3) | 0.0142 (3) | −0.0016 (2) | 0.0016 (2) | 0.0009 (2) |
C5 | 0.0135 (3) | 0.0134 (3) | 0.0132 (3) | −0.0007 (2) | 0.0019 (2) | −0.0003 (2) |
C6 | 0.0135 (3) | 0.0128 (3) | 0.0144 (3) | −0.0016 (2) | 0.0021 (2) | −0.0007 (2) |
C7 | 0.0143 (3) | 0.0145 (3) | 0.0151 (3) | −0.0025 (3) | 0.0024 (2) | 0.0003 (3) |
O1—N1 | 1.2260 (10) | C1—C6 | 1.3964 (11) |
O2—N1 | 1.2380 (10) | C1—H1A | 0.9500 |
O3—C7 | 1.2371 (10) | C2—C3 | 1.3832 (12) |
O4—C7 | 1.3227 (10) | C2—H2A | 0.9500 |
O4—H1O4 | 0.83 (2) | C3—C4 | 1.3945 (11) |
N1—C4 | 1.4490 (10) | C3—H3A | 0.9500 |
N2—C5 | 1.3401 (11) | C4—C5 | 1.4283 (11) |
N2—H1N2 | 0.893 (17) | C5—C6 | 1.4364 (11) |
N2—H2N2 | 0.875 (18) | C6—C7 | 1.4737 (11) |
C1—C2 | 1.3916 (12) | ||
C7—O4—H1O4 | 108.3 (12) | C2—C3—H3A | 119.8 |
O1—N1—O2 | 121.45 (7) | C4—C3—H3A | 119.8 |
O1—N1—C4 | 118.94 (7) | C3—C4—C5 | 122.67 (7) |
O2—N1—C4 | 119.59 (7) | C3—C4—N1 | 116.15 (7) |
C5—N2—H1N2 | 119.8 (11) | C5—C4—N1 | 121.17 (7) |
C5—N2—H2N2 | 119.3 (10) | N2—C5—C4 | 123.47 (7) |
H1N2—N2—H2N2 | 120.7 (15) | N2—C5—C6 | 121.24 (7) |
C2—C1—C6 | 121.91 (7) | C4—C5—C6 | 115.30 (7) |
C2—C1—H1A | 119.0 | C1—C6—C5 | 120.75 (7) |
C6—C1—H1A | 119.0 | C1—C6—C7 | 118.60 (7) |
C3—C2—C1 | 118.87 (8) | C5—C6—C7 | 120.64 (7) |
C3—C2—H2A | 120.6 | O3—C7—O4 | 121.60 (8) |
C1—C2—H2A | 120.6 | O3—C7—C6 | 123.94 (7) |
C2—C3—C4 | 120.47 (8) | O4—C7—C6 | 114.46 (7) |
C6—C1—C2—C3 | −0.58 (13) | N1—C4—C5—C6 | 177.80 (7) |
C1—C2—C3—C4 | 0.47 (13) | C2—C1—C6—C5 | −0.28 (13) |
C2—C3—C4—C5 | 0.49 (13) | C2—C1—C6—C7 | −179.61 (8) |
C2—C3—C4—N1 | −178.63 (8) | N2—C5—C6—C1 | −178.81 (8) |
O1—N1—C4—C3 | −1.42 (12) | C4—C5—C6—C1 | 1.16 (11) |
O2—N1—C4—C3 | 177.38 (7) | N2—C5—C6—C7 | 0.50 (13) |
O1—N1—C4—C5 | 179.46 (8) | C4—C5—C6—C7 | −179.53 (7) |
O2—N1—C4—C5 | −1.75 (12) | C1—C6—C7—O3 | 179.89 (8) |
C3—C4—C5—N2 | 178.69 (8) | C5—C6—C7—O3 | 0.55 (13) |
N1—C4—C5—N2 | −2.24 (13) | C1—C6—C7—O4 | 0.60 (11) |
C3—C4—C5—C6 | −1.28 (12) | C5—C6—C7—O4 | −178.73 (7) |
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H1N2···O2 | 0.892 (17) | 1.958 (16) | 2.6082 (11) | 128.5 (13) |
N2—H1N2···O1i | 0.892 (17) | 2.499 (17) | 3.2885 (12) | 147.8 (14) |
N2—H2N2···O3 | 0.872 (15) | 1.982 (16) | 2.6582 (10) | 133.4 (14) |
O4—H1O4···O3ii | 0.83 (2) | 1.81 (2) | 2.6397 (10) | 176.2 (17) |
C3—H3A···O1iii | 0.95 | 2.49 | 3.4349 (12) | 176 |
Symmetry codes: (i) −x+2, y−1/2, −z+1/2; (ii) −x+1, −y, −z+1; (iii) −x+2, −y+2, −z+1. |
Experimental details
Crystal data | |
Chemical formula | C7H6N2O4 |
Mr | 182.14 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 100 |
a, b, c (Å) | 9.0231 (3), 7.4338 (2), 11.0392 (4) |
β (°) | 92.114 (1) |
V (Å3) | 739.96 (4) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.14 |
Crystal size (mm) | 0.34 × 0.26 × 0.16 |
Data collection | |
Diffractometer | Bruker SMART APEXII CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2009) |
Tmin, Tmax | 0.956, 0.979 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 22297, 3247, 2707 |
Rint | 0.030 |
(sin θ/λ)max (Å−1) | 0.807 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.042, 0.121, 1.04 |
No. of reflections | 3247 |
No. of parameters | 130 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.55, −0.33 |
Computer programs: APEX2 (Bruker, 2009), SAINT (Bruker, 2009), SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H1N2···O2 | 0.892 (17) | 1.958 (16) | 2.6082 (11) | 128.5 (13) |
N2—H1N2···O1i | 0.892 (17) | 2.499 (17) | 3.2885 (12) | 147.8 (14) |
N2—H2N2···O3 | 0.872 (15) | 1.982 (16) | 2.6582 (10) | 133.4 (14) |
O4—H1O4···O3ii | 0.83 (2) | 1.81 (2) | 2.6397 (10) | 176.2 (17) |
C3—H3A···O1iii | 0.9500 | 2.4900 | 3.4349 (12) | 176.00 |
Symmetry codes: (i) −x+2, y−1/2, −z+1/2; (ii) −x+1, −y, −z+1; (iii) −x+2, −y+2, −z+1. |
Acknowledgements
The authors would like to thank Universiti Tunku Abdul Rahman (UTAR) for the UTAR Research Fund (project No. IPSR/RMC/UTARRF/C1-11/C07) and Universiti Sains Malaysia (USM) for financial support as well as technical assistance and facilities. HKF and CKQ also thank USM for the Research University Grant (No. 1001/PFIZIK/811160).
References
Allen, F. H., Kennard, O., Watson, D. G., Brammer, L., Orpen, A. G. & Taylor, R. (1987). J. Chem. Soc. Perkin Trans. 2, pp. S1–19. CrossRef Web of Science Google Scholar
Bernstein, J., Davis, R. E., Shimoni, L. & Chang, N.-L. (1995). Angew. Chem. Int. Ed. Engl. 34, 1555–1573. CrossRef CAS Web of Science Google Scholar
Bruker (2009). APEX2, SAINT and SADABS. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Cosier, J. & Glazer, A. M. (1986). J. Appl. Cryst. 19, 105–107. CrossRef CAS Web of Science IUCr Journals Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Spek, A. L. (2009). Acta Cryst. D65, 148–155. Web of Science CrossRef CAS IUCr Journals Google Scholar
Win, Y.-F., Choong, C.-S., Heng, M.-H., Quah, C. K. & Fun, H.-K. (2011a). Acta Cryst. E67, m561–m562. Web of Science CSD CrossRef IUCr Journals Google Scholar
Win, Y.-F., Choong, C.-S., Teoh, S.-G., Goh, J. H. & Fun, H.-K. (2010). Acta Cryst. E66, m1406–m1407. Web of Science CSD CrossRef IUCr Journals Google Scholar
Win, Y.-F., Choong, C.-S., Teoh, S.-G., Quah, C. K. & Fun, H.-K. (2011b). Acta Cryst. E67, m1276–m1277. Web of Science CSD CrossRef IUCr Journals Google Scholar
Win, Y.-F., Choong, C.-S., Teoh, S.-G., Yeap, C. S. & Fun, H.-K. (2011c). Acta Cryst. E67, m1114–m1115. Web of Science CSD CrossRef IUCr Journals Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
In the study of organotin(IV) carboxylate complexes, 2-amino-5-nitrobenzoic, 2-amino-3-nitrobenzoic, 4-amino-3-nitrobenzoic and 5-amino-2-nitrobenzoic acids have been utilized in the synthesis work (Win et al., 2010, 2011a, 2011b, 2011c). The carboxylate anions of the acids are found to be bonded to tin(IV) atom moieties in both a monodentate and a bidentate manner resulting in structural diversity for organotin(IV) carboxylate complexes (Win et al., 2010, 2011a, 2011b, 2011c).
The title compound, Fig.1, is approximately planar (r.m.s. deviation = 0.026 Å for the 13 non-H atoms). Bond lengths (Allen et al., 1987) and angles are within normal ranges and are comparable to related structures (Win et al., 2010, 2011a, 2011b, 2011c). The molecular structure is stabilized by intramolecular N2–H1N2···O2 and N2–H2N2···O3 hydrogen bonds (Table 1), which generate S(6) ring motifs (Fig. 1, Bernstein et al., 1995).
In the crystal structure, Fig. 2, molecules are linked via intermolecular N2–H1N2···O1, O4–H1O4···O3 and C3–H3A···O1 hydrogen bonds (Table 1) into a three-dimensional network.