metal-organic compounds
Bis[μ-4-(2-oxidobenzylidene)thiosemicarbazidato-κ4S,N1,O:O]bis[(pyridine-κN)zinc]
aDepartment of Chemistry, School of Sciences, Ferdowsi University of Mashhad, Mashhad 91775–1436, Iran, bDepartment of Chemistry, Adam Mickiewicz University, Grunwaldzka 6, 60–780 Poznań, Poland, and cDepartment of Chemistry, Payame Noor University (PNU), Mashhad, Iran
*Correspondence e-mail: mkubicki@amu.edu.pl
In the title compound, [Zn2(C8H7N3OS)2(C5H5N)2], the Zn2O2 ring has a flattened roof shape, with the roof angle equal to 10.10 (6)°. The thiosemicarbazones act as tridentate ligands to one ZnII atom, with the O atoms additionally in bridging positions to the second ZnII atom. Both ZnII atoms are five-coordinated; the coordination polyhedra are close to square pyramids, with the pyridine N atoms at apical positions. Two intermolecular N—H⋯N and one relatively weak N—H⋯S hydrogen bond, together with C—H⋯S weak interactions, connect the molecules into a three-dimensional network.
Related literature
For thiosemicarbazones and their biological activity, see: Alomar et al. (2009); Geweely (2009); Hakimi et al. (2010); Hellmich et al. (2004); Joseph et al. (2004); Latheef et al. (2007); For background to the Cambridge Structural Database, see: Allen (2002). For similar Zn complexes, see: Cui & Hu (1994); Ma et al. (1996).
Experimental
Crystal data
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Refinement
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Data collection: CrysAlis PRO (Agilent, 2011); cell CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SIR92 (Altomare et al., 1993); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008) and Mercury (Macrae et al., 2008); software used to prepare material for publication: SHELXL97.
Supporting information
10.1107/S160053681105522X/rk2324sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S160053681105522X/rk2324Isup2.hkl
To a solution of the Zn(OAc)2×2H2O (0.22 g, 1.0 mmol) in boiling 10 ml of ethanol was added a boiling solution of the 2–(2–hydroxybenzylidene)hydrazinecarbothioamide (0.20 g, 1.0 mmol) in the same solvent (10 ml) and pyridine (0.12 g, 1.5 mmol). The mixture was heated on a water bath for 1 h and left to stand for 3 days when the complexes generally crystallized from the reaction mixture. The products were filtered, washed with ethanol and dried in air.
The hydrogen atoms from NH2–groups were found in difference Fourier map and freely refined. All other hydrogen atoms were generated geometrically and refined as a riding model with their Uiso(H) = 1.2Ueq(C).
Data collection: CrysAlis PRO (Agilent, 2011); cell
CrysAlis PRO (Agilent, 2011); data reduction: CrysAlis PRO (Agilent, 2011); program(s) used to solve structure: SIR92 (Altomare et al., 1993); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008) and Mercury (Macrae et al., 2008); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).[Zn2(C8H7N3OS)2(C5H5N)2] | F(000) = 1376 |
Mr = 675.45 | Dx = 1.568 Mg m−3 |
Monoclinic, P21/c | Cu Kα radiation, λ = 1.54178 Å |
Hall symbol: -P 2ybc | Cell parameters from 3324 reflections |
a = 10.2641 (3) Å | θ = 3–27° |
b = 17.3160 (6) Å | µ = 3.76 mm−1 |
c = 16.6473 (5) Å | T = 295 K |
β = 104.706 (3)° | Block, colourless |
V = 2861.85 (16) Å3 | 0.3 × 0.15 × 0.1 mm |
Z = 4 |
Agilent SuperNova Single source at offset Atlas diffractometer | 5646 independent reflections |
Radiation source: SuperNova X–ray Source | 4967 reflections with I > 2σ(I) |
Mirror monochromator | Rint = 0.024 |
Detector resolution: 10.5357 pixels mm-1 | θmax = 75.5°, θmin = 3.8° |
ω scan | h = −12→12 |
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011) | k = −21→21 |
Tmin = 0.82, Tmax = 1.00 | l = −20→15 |
10543 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.031 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.082 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.05 | w = 1/[σ2(Fo2) + (0.0412P)2 + 0.4387P] where P = (Fo2 + 2Fc2)/3 |
5646 reflections | (Δ/σ)max = 0.001 |
377 parameters | Δρmax = 0.30 e Å−3 |
0 restraints | Δρmin = −0.41 e Å−3 |
[Zn2(C8H7N3OS)2(C5H5N)2] | V = 2861.85 (16) Å3 |
Mr = 675.45 | Z = 4 |
Monoclinic, P21/c | Cu Kα radiation |
a = 10.2641 (3) Å | µ = 3.76 mm−1 |
b = 17.3160 (6) Å | T = 295 K |
c = 16.6473 (5) Å | 0.3 × 0.15 × 0.1 mm |
β = 104.706 (3)° |
Agilent SuperNova Single source at offset Atlas diffractometer | 5646 independent reflections |
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011) | 4967 reflections with I > 2σ(I) |
Tmin = 0.82, Tmax = 1.00 | Rint = 0.024 |
10543 measured reflections |
R[F2 > 2σ(F2)] = 0.031 | 0 restraints |
wR(F2) = 0.082 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.05 | Δρmax = 0.30 e Å−3 |
5646 reflections | Δρmin = −0.41 e Å−3 |
377 parameters |
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R–factor wR and goodness of fit S are based on F2, conventional R–factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R–factors(gt) etc. and is not relevant to the choice of reflections for refinement. R–factors based on F2 are statistically about twice as large as those based on F, and R–factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Zn1 | 0.69348 (3) | 0.151423 (17) | 0.675727 (17) | 0.03492 (9) | |
Zn2 | 0.99909 (3) | 0.106406 (16) | 0.765896 (16) | 0.03350 (8) | |
O1A | 0.87115 (14) | 0.12696 (9) | 0.64931 (8) | 0.0375 (3) | |
C1A | 0.9113 (2) | 0.13850 (12) | 0.57968 (12) | 0.0342 (4) | |
C6A | 1.0204 (3) | 0.09720 (16) | 0.56694 (15) | 0.0502 (6) | |
H6A | 1.0612 | 0.0602 | 0.6057 | 0.060* | |
C5A | 1.0698 (3) | 0.10973 (19) | 0.49806 (17) | 0.0638 (8) | |
H5A | 1.1445 | 0.0823 | 0.4917 | 0.077* | |
C4A | 1.0085 (3) | 0.16296 (19) | 0.43875 (17) | 0.0637 (8) | |
H4A | 1.0422 | 0.1721 | 0.3928 | 0.076* | |
C3A | 0.8978 (3) | 0.20210 (17) | 0.44817 (15) | 0.0514 (6) | |
H3A | 0.8554 | 0.2367 | 0.4071 | 0.062* | |
C2A | 0.8456 (2) | 0.19183 (13) | 0.51808 (12) | 0.0357 (4) | |
C7A | 0.7266 (2) | 0.23507 (13) | 0.51998 (13) | 0.0385 (5) | |
H7A | 0.6974 | 0.2720 | 0.4788 | 0.046* | |
N8A | 0.65690 (17) | 0.22690 (11) | 0.57391 (11) | 0.0371 (4) | |
N9A | 0.5388 (2) | 0.26953 (14) | 0.55813 (13) | 0.0520 (5) | |
C10A | 0.4838 (2) | 0.27287 (17) | 0.62098 (16) | 0.0543 (6) | |
S11A | 0.55217 (6) | 0.23729 (4) | 0.72104 (4) | 0.04851 (15) | |
N12A | 0.3637 (3) | 0.3092 (3) | 0.6074 (2) | 0.0974 (13) | |
H12A | 0.323 (5) | 0.304 (3) | 0.645 (3) | 0.120 (16)* | |
H12B | 0.322 (5) | 0.313 (3) | 0.560 (3) | 0.15 (2)* | |
N13A | 0.58207 (19) | 0.05185 (12) | 0.63312 (11) | 0.0442 (4) | |
C14A | 0.4532 (3) | 0.04424 (18) | 0.63634 (17) | 0.0598 (7) | |
H14A | 0.4076 | 0.0872 | 0.6488 | 0.072* | |
C15A | 0.3874 (3) | −0.0251 (2) | 0.6217 (2) | 0.0808 (10) | |
H15A | 0.2980 | −0.0292 | 0.6239 | 0.097* | |
C16A | 0.4555 (4) | −0.0887 (2) | 0.6037 (2) | 0.0929 (13) | |
H16A | 0.4132 | −0.1366 | 0.5953 | 0.112* | |
C17A | 0.5849 (4) | −0.0810 (2) | 0.5984 (2) | 0.0856 (11) | |
H17A | 0.6321 | −0.1231 | 0.5856 | 0.103* | |
C18A | 0.6442 (3) | −0.00951 (17) | 0.61249 (17) | 0.0591 (7) | |
H18A | 0.7318 | −0.0038 | 0.6074 | 0.071* | |
O1B | 0.81432 (14) | 0.11522 (10) | 0.78830 (9) | 0.0421 (4) | |
C1B | 0.7831 (2) | 0.09209 (13) | 0.85795 (13) | 0.0371 (4) | |
C6B | 0.6525 (2) | 0.06964 (17) | 0.85587 (15) | 0.0527 (6) | |
H6B | 0.5868 | 0.0725 | 0.8059 | 0.063* | |
C5B | 0.6168 (3) | 0.0432 (2) | 0.92560 (17) | 0.0659 (8) | |
H5B | 0.5286 | 0.0279 | 0.9219 | 0.079* | |
C4B | 0.7121 (3) | 0.0395 (2) | 1.00065 (17) | 0.0671 (9) | |
H4B | 0.6894 | 0.0211 | 1.0478 | 0.081* | |
C3B | 0.8406 (3) | 0.06347 (18) | 1.00472 (15) | 0.0562 (7) | |
H3B | 0.9042 | 0.0619 | 1.0557 | 0.067* | |
C2B | 0.8803 (2) | 0.09033 (14) | 0.93500 (13) | 0.0387 (5) | |
C7B | 1.0179 (2) | 0.11677 (15) | 0.94866 (14) | 0.0441 (5) | |
H7B | 1.0676 | 0.1225 | 1.0034 | 0.053* | |
N8B | 1.07691 (17) | 0.13298 (11) | 0.89124 (11) | 0.0373 (4) | |
N9B | 1.20725 (18) | 0.16078 (12) | 0.91816 (12) | 0.0444 (4) | |
C10B | 1.2639 (2) | 0.17693 (13) | 0.85755 (14) | 0.0394 (5) | |
S11B | 1.19620 (5) | 0.16312 (4) | 0.75090 (3) | 0.04356 (14) | |
N12B | 1.3873 (2) | 0.20863 (17) | 0.87933 (16) | 0.0588 (6) | |
H12C | 1.425 (3) | 0.2133 (17) | 0.8447 (18) | 0.056 (9)* | |
H12D | 1.427 (3) | 0.2123 (18) | 0.9327 (19) | 0.065 (9)* | |
N13B | 1.02303 (19) | −0.01384 (11) | 0.76976 (11) | 0.0408 (4) | |
C14B | 0.9228 (3) | −0.06138 (15) | 0.77443 (16) | 0.0510 (6) | |
H14B | 0.8382 | −0.0406 | 0.7717 | 0.061* | |
C15B | 0.9403 (4) | −0.14009 (16) | 0.78314 (19) | 0.0645 (8) | |
H15B | 0.8681 | −0.1719 | 0.7850 | 0.077* | |
C16B | 1.0642 (4) | −0.17070 (17) | 0.78893 (19) | 0.0712 (9) | |
H16B | 1.0782 | −0.2236 | 0.7961 | 0.085* | |
C17B | 1.1681 (3) | −0.12304 (17) | 0.78416 (19) | 0.0678 (8) | |
H17B | 1.2534 | −0.1430 | 0.7874 | 0.081* | |
C18B | 1.1437 (3) | −0.04431 (15) | 0.77445 (15) | 0.0514 (6) | |
H18B | 1.2142 | −0.0117 | 0.7711 | 0.062* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Zn1 | 0.02750 (14) | 0.04156 (17) | 0.03582 (15) | −0.00054 (11) | 0.00824 (11) | 0.00450 (11) |
Zn2 | 0.02757 (14) | 0.03770 (16) | 0.03524 (15) | 0.00084 (10) | 0.00802 (10) | 0.00295 (11) |
O1A | 0.0298 (7) | 0.0517 (9) | 0.0319 (7) | 0.0043 (6) | 0.0096 (5) | 0.0079 (6) |
C1A | 0.0303 (10) | 0.0404 (11) | 0.0324 (10) | −0.0026 (8) | 0.0091 (8) | −0.0011 (8) |
C6A | 0.0496 (13) | 0.0609 (16) | 0.0434 (12) | 0.0145 (12) | 0.0180 (10) | 0.0040 (11) |
C5A | 0.0580 (16) | 0.090 (2) | 0.0519 (15) | 0.0210 (15) | 0.0290 (13) | −0.0017 (15) |
C4A | 0.0638 (17) | 0.092 (2) | 0.0447 (14) | 0.0105 (15) | 0.0316 (13) | 0.0073 (14) |
C3A | 0.0545 (14) | 0.0647 (16) | 0.0390 (12) | 0.0003 (12) | 0.0193 (10) | 0.0099 (11) |
C2A | 0.0339 (10) | 0.0402 (11) | 0.0335 (10) | −0.0043 (8) | 0.0094 (8) | 0.0016 (9) |
C7A | 0.0366 (11) | 0.0441 (12) | 0.0337 (10) | −0.0013 (9) | 0.0068 (8) | 0.0066 (9) |
N8A | 0.0285 (8) | 0.0443 (10) | 0.0375 (9) | 0.0041 (7) | 0.0069 (7) | 0.0049 (8) |
N9A | 0.0368 (10) | 0.0699 (14) | 0.0503 (11) | 0.0191 (10) | 0.0126 (8) | 0.0167 (10) |
C10A | 0.0385 (12) | 0.0679 (17) | 0.0583 (15) | 0.0175 (12) | 0.0159 (11) | 0.0107 (13) |
S11A | 0.0420 (3) | 0.0618 (4) | 0.0461 (3) | 0.0088 (3) | 0.0193 (2) | 0.0043 (3) |
N12A | 0.0647 (18) | 0.162 (4) | 0.073 (2) | 0.063 (2) | 0.0314 (16) | 0.033 (2) |
N13A | 0.0395 (10) | 0.0496 (11) | 0.0419 (10) | −0.0086 (8) | 0.0072 (8) | 0.0003 (9) |
C14A | 0.0445 (14) | 0.0732 (19) | 0.0608 (16) | −0.0159 (13) | 0.0117 (12) | −0.0041 (14) |
C15A | 0.0618 (19) | 0.099 (3) | 0.079 (2) | −0.0414 (19) | 0.0130 (16) | −0.011 (2) |
C16A | 0.103 (3) | 0.075 (2) | 0.091 (3) | −0.051 (2) | 0.008 (2) | −0.015 (2) |
C17A | 0.097 (3) | 0.0586 (19) | 0.094 (3) | −0.0134 (19) | 0.012 (2) | −0.0234 (18) |
C18A | 0.0580 (16) | 0.0554 (16) | 0.0625 (16) | −0.0080 (13) | 0.0128 (13) | −0.0090 (13) |
O1B | 0.0288 (7) | 0.0654 (11) | 0.0330 (7) | 0.0019 (7) | 0.0093 (6) | 0.0104 (7) |
C1B | 0.0328 (10) | 0.0458 (12) | 0.0356 (10) | 0.0008 (9) | 0.0141 (8) | 0.0051 (9) |
C6B | 0.0360 (12) | 0.0794 (19) | 0.0418 (12) | −0.0123 (12) | 0.0081 (9) | 0.0078 (12) |
C5B | 0.0415 (13) | 0.103 (2) | 0.0559 (15) | −0.0213 (15) | 0.0174 (11) | 0.0111 (16) |
C4B | 0.0536 (16) | 0.107 (3) | 0.0452 (14) | −0.0157 (16) | 0.0207 (12) | 0.0176 (15) |
C3B | 0.0437 (13) | 0.088 (2) | 0.0365 (12) | −0.0091 (13) | 0.0093 (10) | 0.0126 (13) |
C2B | 0.0351 (11) | 0.0476 (12) | 0.0352 (10) | −0.0025 (9) | 0.0122 (8) | 0.0014 (9) |
C7B | 0.0365 (11) | 0.0619 (15) | 0.0331 (11) | −0.0067 (10) | 0.0073 (8) | −0.0006 (10) |
N8B | 0.0294 (8) | 0.0444 (10) | 0.0383 (9) | −0.0036 (7) | 0.0092 (7) | −0.0019 (8) |
N9B | 0.0314 (9) | 0.0592 (12) | 0.0426 (10) | −0.0099 (8) | 0.0091 (7) | −0.0058 (9) |
C10B | 0.0297 (10) | 0.0423 (12) | 0.0460 (12) | −0.0033 (9) | 0.0090 (8) | −0.0017 (9) |
S11B | 0.0340 (3) | 0.0560 (3) | 0.0419 (3) | −0.0073 (2) | 0.0119 (2) | 0.0032 (2) |
N12B | 0.0378 (11) | 0.0901 (19) | 0.0503 (13) | −0.0206 (11) | 0.0144 (10) | −0.0047 (13) |
N13B | 0.0441 (10) | 0.0380 (10) | 0.0388 (10) | 0.0048 (8) | 0.0078 (7) | 0.0041 (8) |
C14B | 0.0553 (14) | 0.0428 (13) | 0.0532 (14) | −0.0043 (11) | 0.0108 (11) | −0.0002 (11) |
C15B | 0.083 (2) | 0.0447 (15) | 0.0631 (17) | −0.0107 (14) | 0.0144 (15) | 0.0017 (13) |
C16B | 0.104 (3) | 0.0379 (14) | 0.0656 (19) | 0.0098 (16) | 0.0111 (17) | 0.0048 (13) |
C17B | 0.075 (2) | 0.0560 (17) | 0.0676 (18) | 0.0272 (16) | 0.0085 (15) | 0.0019 (14) |
C18B | 0.0511 (14) | 0.0506 (14) | 0.0514 (14) | 0.0103 (11) | 0.0110 (11) | 0.0043 (11) |
Zn1—O1A | 2.0263 (14) | C16A—C17A | 1.360 (6) |
Zn1—O1B | 2.0647 (14) | C16A—H16A | 0.9300 |
Zn1—N13A | 2.0909 (19) | C17A—C18A | 1.373 (4) |
Zn1—N8A | 2.0974 (18) | C17A—H17A | 0.9300 |
Zn1—S11A | 2.3322 (6) | C18A—H18A | 0.9300 |
Zn2—O1B | 2.0294 (15) | O1B—C1B | 1.340 (2) |
Zn2—O1A | 2.0795 (14) | C1B—C6B | 1.388 (3) |
Zn2—N8B | 2.0875 (18) | C1B—C2B | 1.411 (3) |
Zn2—N13B | 2.0957 (19) | C6B—C5B | 1.381 (3) |
Zn2—S11B | 2.3186 (6) | C6B—H6B | 0.9300 |
O1A—C1A | 1.340 (2) | C5B—C4B | 1.379 (4) |
C1A—C6A | 1.390 (3) | C5B—H5B | 0.9300 |
C1A—C2A | 1.417 (3) | C4B—C3B | 1.368 (4) |
C6A—C5A | 1.384 (3) | C4B—H4B | 0.9300 |
C6A—H6A | 0.9300 | C3B—C2B | 1.403 (3) |
C5A—C4A | 1.380 (4) | C3B—H3B | 0.9300 |
C5A—H5A | 0.9300 | C2B—C7B | 1.446 (3) |
C4A—C3A | 1.366 (4) | C7B—N8B | 1.286 (3) |
C4A—H4A | 0.9300 | C7B—H7B | 0.9300 |
C3A—C2A | 1.410 (3) | N8B—N9B | 1.385 (2) |
C3A—H3A | 0.9300 | N9B—C10B | 1.316 (3) |
C2A—C7A | 1.440 (3) | C10B—N12B | 1.343 (3) |
C7A—N8A | 1.290 (3) | C10B—S11B | 1.751 (2) |
C7A—H7A | 0.9300 | N12B—H12C | 0.77 (3) |
N8A—N9A | 1.386 (2) | N12B—H12D | 0.88 (3) |
N9A—C10A | 1.310 (3) | N13B—C18B | 1.330 (3) |
C10A—N12A | 1.351 (3) | N13B—C14B | 1.335 (3) |
C10A—S11A | 1.747 (3) | C14B—C15B | 1.378 (4) |
N12A—H12A | 0.84 (4) | C14B—H14B | 0.9300 |
N12A—H12B | 0.80 (5) | C15B—C16B | 1.359 (5) |
N13A—C18A | 1.328 (3) | C15B—H15B | 0.9300 |
N13A—C14A | 1.344 (3) | C16B—C17B | 1.366 (5) |
C14A—C15A | 1.369 (4) | C16B—H16B | 0.9300 |
C14A—H14A | 0.9300 | C17B—C18B | 1.388 (4) |
C15A—C16A | 1.377 (6) | C17B—H17B | 0.9300 |
C15A—H15A | 0.9300 | C18B—H18B | 0.9300 |
O1A—Zn1—O1B | 76.54 (6) | C16A—C15A—H15A | 120.5 |
O1A—Zn1—N13A | 101.47 (7) | C17A—C16A—C15A | 119.6 (3) |
O1B—Zn1—N13A | 102.02 (7) | C17A—C16A—H16A | 120.2 |
O1A—Zn1—N8A | 86.63 (6) | C15A—C16A—H16A | 120.2 |
O1B—Zn1—N8A | 149.97 (7) | C16A—C17A—C18A | 118.4 (4) |
N13A—Zn1—N8A | 105.63 (7) | C16A—C17A—H17A | 120.8 |
O1A—Zn1—S11A | 150.62 (5) | C18A—C17A—H17A | 120.8 |
O1B—Zn1—S11A | 100.35 (5) | N13A—C18A—C17A | 123.0 (3) |
N13A—Zn1—S11A | 107.69 (6) | N13A—C18A—H18A | 118.5 |
N8A—Zn1—S11A | 82.28 (5) | C17A—C18A—H18A | 118.5 |
O1B—Zn2—O1A | 76.14 (6) | C1B—O1B—Zn2 | 125.18 (13) |
O1B—Zn2—N8B | 86.44 (6) | C1B—O1B—Zn1 | 130.98 (13) |
O1A—Zn2—N8B | 152.37 (7) | Zn2—O1B—Zn1 | 103.30 (6) |
O1B—Zn2—N13B | 100.18 (7) | O1B—C1B—C6B | 120.23 (19) |
O1A—Zn2—N13B | 103.89 (7) | O1B—C1B—C2B | 121.60 (19) |
N8B—Zn2—N13B | 100.15 (7) | C6B—C1B—C2B | 118.17 (19) |
O1B—Zn2—S11B | 150.41 (5) | C5B—C6B—C1B | 122.2 (2) |
O1A—Zn2—S11B | 100.87 (4) | C5B—C6B—H6B | 118.9 |
N8B—Zn2—S11B | 83.77 (5) | C1B—C6B—H6B | 118.9 |
N13B—Zn2—S11B | 108.99 (6) | C4B—C5B—C6B | 119.9 (2) |
C1A—O1A—Zn1 | 130.37 (13) | C4B—C5B—H5B | 120.1 |
C1A—O1A—Zn2 | 124.97 (12) | C6B—C5B—H5B | 120.1 |
Zn1—O1A—Zn2 | 102.89 (6) | C3B—C4B—C5B | 119.0 (2) |
O1A—C1A—C6A | 119.5 (2) | C3B—C4B—H4B | 120.5 |
O1A—C1A—C2A | 121.95 (19) | C5B—C4B—H4B | 120.5 |
C6A—C1A—C2A | 118.6 (2) | C4B—C3B—C2B | 122.6 (2) |
C5A—C6A—C1A | 121.7 (2) | C4B—C3B—H3B | 118.7 |
C5A—C6A—H6A | 119.2 | C2B—C3B—H3B | 118.7 |
C1A—C6A—H6A | 119.2 | C3B—C2B—C1B | 118.2 (2) |
C4A—C5A—C6A | 120.0 (2) | C3B—C2B—C7B | 116.8 (2) |
C4A—C5A—H5A | 120.0 | C1B—C2B—C7B | 124.94 (19) |
C6A—C5A—H5A | 120.0 | N8B—C7B—C2B | 125.3 (2) |
C3A—C4A—C5A | 119.4 (2) | N8B—C7B—H7B | 117.4 |
C3A—C4A—H4A | 120.3 | C2B—C7B—H7B | 117.4 |
C5A—C4A—H4A | 120.3 | C7B—N8B—N9B | 115.74 (18) |
C4A—C3A—C2A | 122.2 (2) | C7B—N8B—Zn2 | 124.19 (15) |
C4A—C3A—H3A | 118.9 | N9B—N8B—Zn2 | 119.54 (13) |
C2A—C3A—H3A | 118.9 | C10B—N9B—N8B | 113.85 (18) |
C3A—C2A—C1A | 118.0 (2) | N9B—C10B—N12B | 116.7 (2) |
C3A—C2A—C7A | 117.0 (2) | N9B—C10B—S11B | 127.55 (17) |
C1A—C2A—C7A | 124.97 (19) | N12B—C10B—S11B | 115.73 (18) |
N8A—C7A—C2A | 125.6 (2) | C10B—S11B—Zn2 | 94.66 (7) |
N8A—C7A—H7A | 117.2 | C10B—N12B—H12C | 117 (2) |
C2A—C7A—H7A | 117.2 | C10B—N12B—H12D | 118 (2) |
C7A—N8A—N9A | 114.98 (18) | H12C—N12B—H12D | 124 (3) |
C7A—N8A—Zn1 | 127.86 (15) | C18B—N13B—C14B | 118.1 (2) |
N9A—N8A—Zn1 | 116.97 (14) | C18B—N13B—Zn2 | 119.74 (17) |
C10A—N9A—N8A | 113.92 (19) | C14B—N13B—Zn2 | 121.90 (17) |
N9A—C10A—N12A | 116.6 (3) | N13B—C14B—C15B | 122.3 (3) |
N9A—C10A—S11A | 126.55 (18) | N13B—C14B—H14B | 118.8 |
N12A—C10A—S11A | 116.9 (2) | C15B—C14B—H14B | 118.8 |
C10A—S11A—Zn1 | 92.79 (9) | C16B—C15B—C14B | 119.2 (3) |
C10A—N12A—H12A | 116 (3) | C16B—C15B—H15B | 120.4 |
C10A—N12A—H12B | 116 (4) | C14B—C15B—H15B | 120.4 |
H12A—N12A—H12B | 120 (5) | C15B—C16B—C17B | 119.4 (3) |
C18A—N13A—C14A | 118.3 (2) | C15B—C16B—H16B | 120.3 |
C18A—N13A—Zn1 | 119.36 (17) | C17B—C16B—H16B | 120.3 |
C14A—N13A—Zn1 | 121.76 (19) | C16B—C17B—C18B | 118.7 (3) |
N13A—C14A—C15A | 121.7 (3) | C16B—C17B—H17B | 120.7 |
N13A—C14A—H14A | 119.2 | C18B—C17B—H17B | 120.7 |
C15A—C14A—H14A | 119.2 | N13B—C18B—C17B | 122.3 (3) |
C14A—C15A—C16A | 119.0 (3) | N13B—C18B—H18B | 118.9 |
C14A—C15A—H15A | 120.5 | C17B—C18B—H18B | 118.9 |
O1B—Zn1—O1A—C1A | −173.10 (19) | O1A—Zn2—O1B—C1B | 164.28 (19) |
N13A—Zn1—O1A—C1A | 87.11 (19) | N8B—Zn2—O1B—C1B | −37.35 (18) |
N8A—Zn1—O1A—C1A | −18.16 (18) | N13B—Zn2—O1B—C1B | 62.33 (19) |
S11A—Zn1—O1A—C1A | −85.9 (2) | S11B—Zn2—O1B—C1B | −108.09 (18) |
O1B—Zn1—O1A—Zn2 | −8.04 (7) | O1A—Zn2—O1B—Zn1 | −8.06 (7) |
N13A—Zn1—O1A—Zn2 | −107.83 (8) | N8B—Zn2—O1B—Zn1 | 150.32 (9) |
N8A—Zn1—O1A—Zn2 | 146.89 (8) | N13B—Zn2—O1B—Zn1 | −110.00 (8) |
S11A—Zn1—O1A—Zn2 | 79.16 (10) | S11B—Zn2—O1B—Zn1 | 79.58 (11) |
O1B—Zn2—O1A—C1A | 174.33 (18) | O1A—Zn1—O1B—C1B | −163.4 (2) |
N8B—Zn2—O1A—C1A | 121.86 (18) | N13A—Zn1—O1B—C1B | −64.3 (2) |
N13B—Zn2—O1A—C1A | −88.40 (17) | N8A—Zn1—O1B—C1B | 138.90 (19) |
S11B—Zn2—O1A—C1A | 24.48 (17) | S11A—Zn1—O1B—C1B | 46.4 (2) |
O1B—Zn2—O1A—Zn1 | 8.20 (7) | O1A—Zn1—O1B—Zn2 | 8.26 (7) |
N8B—Zn2—O1A—Zn1 | −44.27 (17) | N13A—Zn1—O1B—Zn2 | 107.35 (8) |
N13B—Zn2—O1A—Zn1 | 105.47 (8) | N8A—Zn1—O1B—Zn2 | −49.41 (17) |
S11B—Zn2—O1A—Zn1 | −141.65 (5) | S11A—Zn1—O1B—Zn2 | −141.87 (6) |
Zn1—O1A—C1A—C6A | −160.87 (18) | Zn2—O1B—C1B—C6B | −152.5 (2) |
Zn2—O1A—C1A—C6A | 37.0 (3) | Zn1—O1B—C1B—C6B | 17.6 (3) |
Zn1—O1A—C1A—C2A | 19.1 (3) | Zn2—O1B—C1B—C2B | 28.1 (3) |
Zn2—O1A—C1A—C2A | −143.01 (16) | Zn1—O1B—C1B—C2B | −161.84 (17) |
O1A—C1A—C6A—C5A | −176.8 (3) | O1B—C1B—C6B—C5B | 178.0 (3) |
C2A—C1A—C6A—C5A | 3.2 (4) | C2B—C1B—C6B—C5B | −2.5 (4) |
C1A—C6A—C5A—C4A | −1.7 (5) | C1B—C6B—C5B—C4B | 0.9 (5) |
C6A—C5A—C4A—C3A | −0.9 (5) | C6B—C5B—C4B—C3B | 1.0 (6) |
C5A—C4A—C3A—C2A | 2.0 (5) | C5B—C4B—C3B—C2B | −1.3 (5) |
C4A—C3A—C2A—C1A | −0.4 (4) | C4B—C3B—C2B—C1B | −0.3 (4) |
C4A—C3A—C2A—C7A | −178.6 (3) | C4B—C3B—C2B—C7B | 177.6 (3) |
O1A—C1A—C2A—C3A | 177.8 (2) | O1B—C1B—C2B—C3B | −178.4 (2) |
C6A—C1A—C2A—C3A | −2.2 (3) | C6B—C1B—C2B—C3B | 2.2 (4) |
O1A—C1A—C2A—C7A | −4.1 (3) | O1B—C1B—C2B—C7B | 3.9 (4) |
C6A—C1A—C2A—C7A | 175.9 (2) | C6B—C1B—C2B—C7B | −175.6 (3) |
C3A—C2A—C7A—N8A | 172.1 (2) | C3B—C2B—C7B—N8B | 169.7 (3) |
C1A—C2A—C7A—N8A | −6.0 (4) | C1B—C2B—C7B—N8B | −12.5 (4) |
C2A—C7A—N8A—N9A | −173.8 (2) | C2B—C7B—N8B—N9B | 177.1 (2) |
C2A—C7A—N8A—Zn1 | 1.1 (3) | C2B—C7B—N8B—Zn2 | −11.3 (4) |
O1A—Zn1—N8A—C7A | 7.88 (19) | O1B—Zn2—N8B—C7B | 28.7 (2) |
O1B—Zn1—N8A—C7A | 63.3 (3) | O1A—Zn2—N8B—C7B | 79.2 (3) |
N13A—Zn1—N8A—C7A | −93.1 (2) | N13B—Zn2—N8B—C7B | −71.0 (2) |
S11A—Zn1—N8A—C7A | 160.6 (2) | S11B—Zn2—N8B—C7B | −179.3 (2) |
O1A—Zn1—N8A—N9A | −177.33 (17) | O1B—Zn2—N8B—N9B | −160.02 (17) |
O1B—Zn1—N8A—N9A | −121.94 (17) | O1A—Zn2—N8B—N9B | −109.53 (19) |
N13A—Zn1—N8A—N9A | 81.69 (17) | N13B—Zn2—N8B—N9B | 100.26 (17) |
S11A—Zn1—N8A—N9A | −24.60 (16) | S11B—Zn2—N8B—N9B | −7.98 (16) |
C7A—N8A—N9A—C10A | −167.0 (2) | C7B—N8B—N9B—C10B | −179.8 (2) |
Zn1—N8A—N9A—C10A | 17.6 (3) | Zn2—N8B—N9B—C10B | 8.2 (3) |
N8A—N9A—C10A—N12A | −175.6 (3) | N8B—N9B—C10B—N12B | 176.0 (2) |
N8A—N9A—C10A—S11A | 6.1 (4) | N8B—N9B—C10B—S11B | −3.0 (3) |
N9A—C10A—S11A—Zn1 | −21.8 (3) | N9B—C10B—S11B—Zn2 | −2.6 (2) |
N12A—C10A—S11A—Zn1 | 159.9 (3) | N12B—C10B—S11B—Zn2 | 178.4 (2) |
O1A—Zn1—S11A—C10A | 88.84 (13) | O1B—Zn2—S11B—C10B | 76.08 (12) |
O1B—Zn1—S11A—C10A | 169.75 (11) | O1A—Zn2—S11B—C10B | 157.12 (9) |
N13A—Zn1—S11A—C10A | −83.96 (11) | N8B—Zn2—S11B—C10B | 4.67 (9) |
N8A—Zn1—S11A—C10A | 20.05 (11) | N13B—Zn2—S11B—C10B | −93.94 (10) |
O1A—Zn1—N13A—C18A | 11.1 (2) | O1B—Zn2—N13B—C18B | −166.50 (17) |
O1B—Zn1—N13A—C18A | −67.4 (2) | O1A—Zn2—N13B—C18B | 115.40 (17) |
N8A—Zn1—N13A—C18A | 100.8 (2) | N8B—Zn2—N13B—C18B | −78.33 (18) |
S11A—Zn1—N13A—C18A | −172.51 (18) | S11B—Zn2—N13B—C18B | 8.51 (18) |
O1A—Zn1—N13A—C14A | −177.97 (19) | O1B—Zn2—N13B—C14B | 7.98 (19) |
O1B—Zn1—N13A—C14A | 103.55 (19) | O1A—Zn2—N13B—C14B | −70.11 (19) |
N8A—Zn1—N13A—C14A | −88.3 (2) | N8B—Zn2—N13B—C14B | 96.16 (18) |
S11A—Zn1—N13A—C14A | −1.6 (2) | S11B—Zn2—N13B—C14B | −177.00 (17) |
C18A—N13A—C14A—C15A | 2.2 (4) | C18B—N13B—C14B—C15B | −0.5 (4) |
Zn1—N13A—C14A—C15A | −168.9 (2) | Zn2—N13B—C14B—C15B | −175.1 (2) |
N13A—C14A—C15A—C16A | 0.4 (5) | N13B—C14B—C15B—C16B | 1.4 (4) |
C14A—C15A—C16A—C17A | −1.9 (6) | C14B—C15B—C16B—C17B | −1.4 (5) |
C15A—C16A—C17A—C18A | 0.9 (6) | C15B—C16B—C17B—C18B | 0.7 (5) |
C14A—N13A—C18A—C17A | −3.3 (4) | C14B—N13B—C18B—C17B | −0.2 (4) |
Zn1—N13A—C18A—C17A | 167.9 (3) | Zn2—N13B—C18B—C17B | 174.5 (2) |
C16A—C17A—C18A—N13A | 1.8 (5) | C16B—C17B—C18B—N13B | 0.1 (4) |
D—H···A | D—H | H···A | D···A | D—H···A |
N12A—H12B···N9Bi | 0.80 (5) | 2.40 (5) | 3.195 (4) | 174 (6) |
N12B—H12C···S11Aii | 0.77 (3) | 2.74 (3) | 3.510 (3) | 177 (3) |
N12B—H12D···N9Aiii | 0.88 (3) | 2.14 (3) | 3.012 (3) | 173 (3) |
C17B—H17B···S11Aiv | 0.93 | 2.91 | 3.772 (3) | 156 |
Symmetry codes: (i) x−1, −y+1/2, z−1/2; (ii) x+1, y, z; (iii) x+1, −y+1/2, z+1/2; (iv) −x+2, y−1/2, −z+3/2. |
Experimental details
Crystal data | |
Chemical formula | [Zn2(C8H7N3OS)2(C5H5N)2] |
Mr | 675.45 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 295 |
a, b, c (Å) | 10.2641 (3), 17.3160 (6), 16.6473 (5) |
β (°) | 104.706 (3) |
V (Å3) | 2861.85 (16) |
Z | 4 |
Radiation type | Cu Kα |
µ (mm−1) | 3.76 |
Crystal size (mm) | 0.3 × 0.15 × 0.1 |
Data collection | |
Diffractometer | Agilent SuperNova Single source at offset Atlas diffractometer |
Absorption correction | Multi-scan (CrysAlis PRO; Agilent, 2011) |
Tmin, Tmax | 0.82, 1.00 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 10543, 5646, 4967 |
Rint | 0.024 |
(sin θ/λ)max (Å−1) | 0.628 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.031, 0.082, 1.05 |
No. of reflections | 5646 |
No. of parameters | 377 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.30, −0.41 |
Computer programs: CrysAlis PRO (Agilent, 2011), SIR92 (Altomare et al., 1993), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008) and Mercury (Macrae et al., 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
N12A—H12B···N9Bi | 0.80 (5) | 2.40 (5) | 3.195 (4) | 174 (6) |
N12B—H12C···S11Aii | 0.77 (3) | 2.74 (3) | 3.510 (3) | 177 (3) |
N12B—H12D···N9Aiii | 0.88 (3) | 2.14 (3) | 3.012 (3) | 173 (3) |
C17B—H17B···S11Aiv | 0.93 | 2.91 | 3.772 (3) | 155.5 |
Symmetry codes: (i) x−1, −y+1/2, z−1/2; (ii) x+1, y, z; (iii) x+1, −y+1/2, z+1/2; (iv) −x+2, y−1/2, −z+3/2. |
Acknowledgements
The authors are grateful to the Ferdowsi University of Mashhad for financial support.
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Thiosemicarbazones occupy important class of N,S–donor ligands due to their great versatility (e.g., Alomar et al., 2009). Their complexes with transition metals have been subject of considerable interest because of their chemical and biological properties. The most important biological activities are antiviral, antifungal, antibacterial, antitumor, anticancerogenic and insulinmimetic properties (Hakimi et al., 2010).
The biological activity is due to the ability to form tridentate chelates with metal ions bonding through oxygen, nitrogen and sulfur atoms (Joseph et al., 2004). Zinc is essential ion to play an important role in various biological systems and may be its presence in certain metalloenzymes (Hellmich et al., 2004). The Zn(II) ion has been found to be of catalytic importance in enzymatic reactions (Latheef et al., 2007). The enhancement of antitumor activity of some thiosemicarbazones in the presence of Zn(II) ions has been reported (Geweely, 2009).
Herein we report the synthesis and crystal structure of a new Zn(II) complex, bis((µ2–salicylidenealdiminato–N–thiosemicarbazono–O,O,S,N)–(pyridine–N)–Zn(II) (Scheme 1). Some crystal structures of similar dinuclear Zn(II) complexes have been reported earlier, e.g. (µ2–hydroxo)–(µ2–2,6–diformyl–4–methylphenolato– bis(thiosemicarbazone))–dipyridyl–di–zinc pyridine solvate (Ma et al., 1996), or bis((µ2–6–methoxysalicylidenealdiminato–N–thiosemicarbazono– O,O,S,N)–(dimethylformamide–O)–Zn(II)) (Cui & Hu, 1994).
Each of the thiosemicarbazone fragments acts as a tetradentate ligand, with oxygen atoms in bridging positions. Both Zn atoms are 5–coordinated with the coordination scheme close to square pyramid, the pyridine nitrogen atoms occupy apical positions. The four base atoms are coplanar within 0.0192 (9)Å (around Zn1) and 0.0532 (10)Å (Zn2), while the Zn and pyridine N atoms are out of these planes by 0.5273 (8)Å and -2.612 (2)Å (Zn1) and by 0.5023 (8)Å and 2.586 (2)Å (Zn2). The two apical pyridine fragments make dihedral angle of only 19.91 (8)°. The Zn2O2 ring has a flattened roof shape, with the roof angle (defined as the dihedral angle between two ZnO2 planes) equal to 10.10 (6)°. This value is close to the mean value found for 752 fragments from the Cambridge Structural Database (Allen, 2002), of 12°. It might be noted however that in the majority of these complexes the ZnOZnO fragment is planar due to its symmetry.
Two thiosemicarbazone molecules have very similar geometries, with elongated C—O and C—S bonds, due to involvement of the heteroatoms in the coordination. The chain fragments are in extended conformation, the whole chains are approximately - within 0.131 (2)Å and 0.0495 (16)Å - planar, and their mean planes are not far from coplanarity with the ring, the dihedral angles between the mean planes are 14.62 (12)° and 16.45 (8)°.
In the crystal structure there are two classical intermolecular N—H···N and one N—H···S relatively weak hydrogen bonds, which together with non–classical C—H···S weak interaction, connect molecules into three–dimensional network.