organic compounds
Evodiamide
aGuangdong Province Key Laboratory of Pharmacodynamic Constituents of Traditional Chinese Medicine and New Drugs Research, Institute of Traditional Chinese Medicine and Natural Products, Jinan University, Guangzhou 510632, People's Republic of China
*Correspondence e-mail: trwjiang@jnu.edu.cn
The title compound, C19H21N3O, was isolated from the fruits of Evodia rutaecarpa. The indole and benzene rings are both essentially planar with mean derivations of 0.0094 (4) Å and 0.0077 (3) Å, respectively. The dihedral angle between these two planes is 78.24 (9)°. The amide carbonyl plane is roughly parallel to the indole ring with a dihedral angle of 7.0 (2)°, but makes a dihedral angle of 82.9 (3)° with the benzene ring. Intermolecular N—H⋯O hydrogen-bonding interactions involving the amino and carbonyl groups give rise to a three-dimensional network.
Related literature
For previous isolation of evodiamide, see: Shoji et al. (1988); Tang et al. (1997); Zuo et al. (2003). For the LC–MS analysis, see: Zhou et al. (2006). For the of evodiamine, see: Fujii et al. (2000). For the biological activity of Evodia rutaecarpa and related see: Liao et al. (2011).
Experimental
Crystal data
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Refinement
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Data collection: SMART (Bruker, 1998); cell SMART and SAINT (Bruker, 1998); data reduction: XPREP in SHELXTL (Sheldrick, 2008); program(s) used to solve structure: SHELXTL; program(s) used to refine structure: SHELXTL; molecular graphics: XP in SHELXTL; software used to prepare material for publication: SHELXTL.
Supporting information
10.1107/S1600536811055553/vm2145sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536811055553/vm2145Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536811055553/vm2145Isup3.cml
Dried fruits (2.3 kg) of Evodia rutaecarpa (A. juss.) Benth. were milled and extracted with alcohol under reflux condition for 3 h. The alcohol extracts were filtered and concentrated to a syrup, which was suspended with water and sequentially partitioned with petroleum ether and ethyl acetate. The ethyl acetate extract (206 g) was chromatographied on silica gel with
dichloromethane-methanol to give 30 fractions. Fraction 8 eluted by dichloromethane-methanol (19:1) was further chromatographied on silica gel with chloroform-acetone (4:1) as the mobile phase to give title compound (15 mg). Colorless crystals were obtained by recrystallization from a methanol solution.The C-bound H atoms were positioned geometrically and were included in the
in the riding-model approximation, with C—H = 0.96 Å (CH3) and Uiso(H) = 1.5Ueq(C); 0.97 Å (CH2) and Uiso(H) = 1.2Ueq(C); 0.93 Å (aryl H) and Uiso(H)= 1.2Ueq(C); O—H = 0.82 Å and Uiso(H) = 1.5Ueq(O).Data collection: SMART (Bruker, 1998); cell
SMART and SAINT (Bruker, 1998); data reduction: XPREP in SHELXTL (Sheldrick, 2008); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: XP in SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).C19H21N3O | Z = 2 |
Mr = 307.39 | F(000) = 328 |
Triclinic, P1 | Dx = 1.217 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 8.958 (2) Å | Cell parameters from 4931 reflections |
b = 9.886 (2) Å | θ = 2.2–26.5° |
c = 10.616 (2) Å | µ = 0.08 mm−1 |
α = 84.076 (4)° | T = 291 K |
β = 76.276 (4)° | Prism, colorless |
γ = 66.746 (3)° | 0.45 × 0.36 × 0.30 mm |
V = 839.0 (3) Å3 |
Bruker SMART CCD 1000 diffractometer | 3424 independent reflections |
Radiation source: fine-focus sealed tube | 2149 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.017 |
ω scan | θmax = 26.5°, θmin = 2.2° |
Absorption correction: multi-scan (SADABS; Sheldrick, 2004) | h = −10→11 |
Tmin = 0.661, Tmax = 1.000 | k = −10→12 |
4931 measured reflections | l = −13→9 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.049 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.146 | H-atom parameters constrained |
S = 1.04 | w = 1/[σ2(Fo2) + (0.0649P)2 + 0.1581P] where P = (Fo2 + 2Fc2)/3 |
3424 reflections | (Δ/σ)max < 0.001 |
211 parameters | Δρmax = 0.35 e Å−3 |
0 restraints | Δρmin = −0.22 e Å−3 |
C19H21N3O | γ = 66.746 (3)° |
Mr = 307.39 | V = 839.0 (3) Å3 |
Triclinic, P1 | Z = 2 |
a = 8.958 (2) Å | Mo Kα radiation |
b = 9.886 (2) Å | µ = 0.08 mm−1 |
c = 10.616 (2) Å | T = 291 K |
α = 84.076 (4)° | 0.45 × 0.36 × 0.30 mm |
β = 76.276 (4)° |
Bruker SMART CCD 1000 diffractometer | 3424 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 2004) | 2149 reflections with I > 2σ(I) |
Tmin = 0.661, Tmax = 1.000 | Rint = 0.017 |
4931 measured reflections |
R[F2 > 2σ(F2)] = 0.049 | 0 restraints |
wR(F2) = 0.146 | H-atom parameters constrained |
S = 1.04 | Δρmax = 0.35 e Å−3 |
3424 reflections | Δρmin = −0.22 e Å−3 |
211 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
N1 | 0.7904 (2) | −0.28425 (19) | 0.26473 (18) | 0.0509 (5) | |
H1A | 0.8747 | −0.3553 | 0.2853 | 0.069 (8)* | |
N2 | 0.2948 (2) | 0.31488 (17) | 0.37369 (17) | 0.0437 (4) | |
N3 | −0.0454 (2) | 0.23860 (19) | 0.48132 (17) | 0.0485 (5) | |
H3A | 0.0126 | 0.2686 | 0.5169 | 0.135 (14)* | |
O1 | 0.08389 (18) | 0.52561 (15) | 0.34402 (16) | 0.0558 (4) | |
C1 | 0.7523 (3) | −0.1380 (2) | 0.2787 (2) | 0.0490 (5) | |
H1 | 0.8143 | −0.1003 | 0.3127 | 0.059* | |
C2 | 0.6114 (2) | −0.0550 (2) | 0.2362 (2) | 0.0438 (5) | |
C3 | 0.5579 (2) | −0.1564 (2) | 0.19235 (18) | 0.0431 (5) | |
C4 | 0.6720 (3) | −0.2988 (2) | 0.21239 (19) | 0.0459 (5) | |
C5 | 0.6557 (3) | −0.4248 (3) | 0.1821 (2) | 0.0579 (6) | |
H5 | 0.7322 | −0.5180 | 0.1966 | 0.070* | |
C6 | 0.5236 (4) | −0.4069 (3) | 0.1305 (2) | 0.0703 (7) | |
H6 | 0.5089 | −0.4895 | 0.1104 | 0.084* | |
C7 | 0.4092 (3) | −0.2662 (3) | 0.1069 (2) | 0.0686 (7) | |
H7 | 0.3213 | −0.2574 | 0.0701 | 0.082* | |
C8 | 0.4249 (3) | −0.1416 (3) | 0.1372 (2) | 0.0570 (6) | |
H8 | 0.3485 | −0.0488 | 0.1213 | 0.068* | |
C9 | 0.5227 (3) | 0.1091 (2) | 0.2416 (2) | 0.0494 (5) | |
H9A | 0.4777 | 0.1441 | 0.1644 | 0.059* | |
H9B | 0.6012 | 0.1537 | 0.2429 | 0.059* | |
C10 | 0.3823 (2) | 0.1555 (2) | 0.3612 (2) | 0.0452 (5) | |
H10A | 0.3030 | 0.1124 | 0.3580 | 0.054* | |
H10B | 0.4276 | 0.1165 | 0.4377 | 0.054* | |
C11 | 0.3714 (3) | 0.3946 (2) | 0.4276 (2) | 0.0586 (6) | |
H11A | 0.3025 | 0.4977 | 0.4307 | 0.088* | |
H11B | 0.4791 | 0.3800 | 0.3740 | 0.088* | |
H11C | 0.3831 | 0.3585 | 0.5137 | 0.088* | |
C12 | 0.1543 (2) | 0.3898 (2) | 0.33301 (19) | 0.0396 (5) | |
C13 | 0.0829 (2) | 0.3066 (2) | 0.27095 (19) | 0.0405 (5) | |
C14 | −0.0184 (2) | 0.2372 (2) | 0.34723 (19) | 0.0405 (5) | |
C15 | −0.0836 (3) | 0.1641 (2) | 0.2837 (2) | 0.0500 (6) | |
H15 | −0.1513 | 0.1177 | 0.3321 | 0.060* | |
C16 | −0.0495 (3) | 0.1595 (3) | 0.1507 (2) | 0.0603 (6) | |
H16 | −0.0928 | 0.1085 | 0.1105 | 0.072* | |
C17 | 0.0476 (3) | 0.2289 (3) | 0.0761 (2) | 0.0629 (7) | |
H17 | 0.0689 | 0.2268 | −0.0140 | 0.076* | |
C18 | 0.1131 (3) | 0.3022 (2) | 0.1380 (2) | 0.0530 (6) | |
H18 | 0.1791 | 0.3495 | 0.0885 | 0.064* | |
C19 | −0.1698 (3) | 0.1902 (2) | 0.5620 (2) | 0.0609 (6) | |
H19A | −0.2751 | 0.2438 | 0.5386 | 0.091* | |
H19B | −0.1791 | 0.2077 | 0.6514 | 0.091* | |
H19C | −0.1379 | 0.0869 | 0.5497 | 0.091* |
U11 | U22 | U33 | U12 | U13 | U23 | |
N1 | 0.0455 (10) | 0.0397 (10) | 0.0620 (12) | −0.0070 (8) | −0.0185 (9) | 0.0013 (8) |
N2 | 0.0400 (9) | 0.0362 (9) | 0.0556 (11) | −0.0119 (8) | −0.0160 (8) | −0.0015 (8) |
N3 | 0.0515 (11) | 0.0527 (11) | 0.0452 (11) | −0.0260 (9) | −0.0070 (9) | 0.0000 (8) |
O1 | 0.0516 (9) | 0.0349 (8) | 0.0805 (11) | −0.0076 (7) | −0.0265 (8) | −0.0077 (7) |
C1 | 0.0446 (12) | 0.0448 (13) | 0.0562 (14) | −0.0154 (10) | −0.0101 (10) | −0.0029 (10) |
C2 | 0.0380 (11) | 0.0406 (11) | 0.0451 (12) | −0.0100 (9) | −0.0035 (9) | −0.0006 (9) |
C3 | 0.0413 (11) | 0.0475 (12) | 0.0349 (11) | −0.0142 (10) | −0.0030 (9) | −0.0002 (9) |
C4 | 0.0501 (12) | 0.0459 (12) | 0.0375 (11) | −0.0165 (10) | −0.0048 (9) | −0.0015 (9) |
C5 | 0.0734 (17) | 0.0495 (14) | 0.0505 (14) | −0.0234 (12) | −0.0122 (12) | −0.0025 (10) |
C6 | 0.100 (2) | 0.0733 (18) | 0.0512 (15) | −0.0477 (17) | −0.0130 (15) | −0.0067 (13) |
C7 | 0.0757 (18) | 0.095 (2) | 0.0520 (15) | −0.0456 (17) | −0.0221 (13) | −0.0012 (14) |
C8 | 0.0538 (14) | 0.0681 (16) | 0.0477 (13) | −0.0217 (12) | −0.0136 (11) | 0.0051 (11) |
C9 | 0.0430 (12) | 0.0409 (12) | 0.0588 (14) | −0.0131 (9) | −0.0083 (10) | 0.0043 (10) |
C10 | 0.0406 (11) | 0.0371 (11) | 0.0534 (13) | −0.0097 (9) | −0.0128 (10) | 0.0043 (9) |
C11 | 0.0540 (14) | 0.0532 (14) | 0.0775 (17) | −0.0210 (11) | −0.0279 (12) | −0.0047 (12) |
C12 | 0.0385 (11) | 0.0364 (11) | 0.0428 (12) | −0.0135 (9) | −0.0083 (9) | −0.0009 (9) |
C13 | 0.0375 (11) | 0.0355 (11) | 0.0448 (12) | −0.0097 (9) | −0.0076 (9) | −0.0049 (9) |
C14 | 0.0381 (11) | 0.0312 (10) | 0.0483 (12) | −0.0086 (9) | −0.0093 (9) | −0.0028 (9) |
C15 | 0.0497 (13) | 0.0454 (12) | 0.0596 (15) | −0.0228 (10) | −0.0095 (11) | −0.0078 (10) |
C16 | 0.0615 (15) | 0.0617 (15) | 0.0640 (16) | −0.0237 (13) | −0.0178 (13) | −0.0171 (12) |
C17 | 0.0641 (16) | 0.0791 (17) | 0.0457 (14) | −0.0256 (14) | −0.0105 (12) | −0.0124 (12) |
C18 | 0.0523 (13) | 0.0624 (14) | 0.0456 (13) | −0.0253 (12) | −0.0060 (10) | −0.0029 (11) |
C19 | 0.0628 (15) | 0.0583 (15) | 0.0599 (15) | −0.0287 (12) | −0.0008 (12) | 0.0001 (11) |
N1—C1 | 1.363 (3) | C8—H8 | 0.9300 |
N1—C4 | 1.368 (3) | C9—C10 | 1.521 (3) |
N1—H1A | 0.8600 | C9—H9A | 0.9700 |
N2—C12 | 1.332 (2) | C9—H9B | 0.9700 |
N2—C11 | 1.458 (3) | C10—H10A | 0.9700 |
N2—C10 | 1.461 (2) | C10—H10B | 0.9700 |
N3—C14 | 1.387 (3) | C11—H11A | 0.9600 |
N3—C19 | 1.445 (3) | C11—H11B | 0.9600 |
N3—H3A | 0.8600 | C11—H11C | 0.9600 |
O1—C12 | 1.242 (2) | C12—C13 | 1.500 (3) |
C1—C2 | 1.359 (3) | C13—C18 | 1.374 (3) |
C1—H1 | 0.9300 | C13—C14 | 1.406 (3) |
C2—C3 | 1.425 (3) | C14—C15 | 1.392 (3) |
C2—C9 | 1.499 (3) | C15—C16 | 1.373 (3) |
C3—C8 | 1.400 (3) | C15—H15 | 0.9300 |
C3—C4 | 1.406 (3) | C16—C17 | 1.374 (3) |
C4—C5 | 1.386 (3) | C16—H16 | 0.9300 |
C5—C6 | 1.362 (3) | C17—C18 | 1.385 (3) |
C5—H5 | 0.9300 | C17—H17 | 0.9300 |
C6—C7 | 1.404 (4) | C18—H18 | 0.9300 |
C6—H6 | 0.9300 | C19—H19A | 0.9600 |
C7—C8 | 1.372 (3) | C19—H19B | 0.9600 |
C7—H7 | 0.9300 | C19—H19C | 0.9600 |
C1—N1—C4 | 108.52 (18) | N2—C10—C9 | 113.61 (17) |
C1—N1—H1A | 125.7 | N2—C10—H10A | 108.8 |
C4—N1—H1A | 125.7 | C9—C10—H10A | 108.8 |
C12—N2—C11 | 119.29 (17) | N2—C10—H10B | 108.8 |
C12—N2—C10 | 123.18 (17) | C9—C10—H10B | 108.8 |
C11—N2—C10 | 117.46 (16) | H10A—C10—H10B | 107.7 |
C14—N3—C19 | 120.82 (18) | N2—C11—H11A | 109.5 |
C14—N3—H3A | 119.6 | N2—C11—H11B | 109.5 |
C19—N3—H3A | 119.6 | H11A—C11—H11B | 109.5 |
C2—C1—N1 | 110.75 (19) | N2—C11—H11C | 109.5 |
C2—C1—H1 | 124.6 | H11A—C11—H11C | 109.5 |
N1—C1—H1 | 124.6 | H11B—C11—H11C | 109.5 |
C1—C2—C3 | 106.02 (18) | O1—C12—N2 | 121.55 (18) |
C1—C2—C9 | 127.5 (2) | O1—C12—C13 | 120.06 (17) |
C3—C2—C9 | 126.38 (19) | N2—C12—C13 | 118.39 (17) |
C8—C3—C4 | 118.6 (2) | C18—C13—C14 | 119.92 (19) |
C8—C3—C2 | 134.2 (2) | C18—C13—C12 | 119.34 (18) |
C4—C3—C2 | 107.22 (18) | C14—C13—C12 | 120.70 (17) |
N1—C4—C5 | 130.0 (2) | N3—C14—C15 | 122.18 (19) |
N1—C4—C3 | 107.49 (18) | N3—C14—C13 | 119.84 (18) |
C5—C4—C3 | 122.5 (2) | C15—C14—C13 | 117.93 (19) |
C6—C5—C4 | 117.5 (2) | C16—C15—C14 | 121.0 (2) |
C6—C5—H5 | 121.2 | C16—C15—H15 | 119.5 |
C4—C5—H5 | 121.2 | C14—C15—H15 | 119.5 |
C5—C6—C7 | 121.4 (2) | C15—C16—C17 | 121.1 (2) |
C5—C6—H6 | 119.3 | C15—C16—H16 | 119.4 |
C7—C6—H6 | 119.3 | C17—C16—H16 | 119.4 |
C8—C7—C6 | 121.1 (2) | C16—C17—C18 | 118.4 (2) |
C8—C7—H7 | 119.4 | C16—C17—H17 | 120.8 |
C6—C7—H7 | 119.4 | C18—C17—H17 | 120.8 |
C7—C8—C3 | 118.9 (2) | C13—C18—C17 | 121.6 (2) |
C7—C8—H8 | 120.6 | C13—C18—H18 | 119.2 |
C3—C8—H8 | 120.6 | C17—C18—H18 | 119.2 |
C2—C9—C10 | 111.22 (17) | N3—C19—H19A | 109.5 |
C2—C9—H9A | 109.4 | N3—C19—H19B | 109.5 |
C10—C9—H9A | 109.4 | H19A—C19—H19B | 109.5 |
C2—C9—H9B | 109.4 | N3—C19—H19C | 109.5 |
C10—C9—H9B | 109.4 | H19A—C19—H19C | 109.5 |
H9A—C9—H9B | 108.0 | H19B—C19—H19C | 109.5 |
C4—N1—C1—C2 | −0.3 (2) | C11—N2—C10—C9 | −80.9 (2) |
N1—C1—C2—C3 | −0.1 (2) | C2—C9—C10—N2 | 178.10 (17) |
N1—C1—C2—C9 | 176.33 (19) | C11—N2—C12—O1 | −2.5 (3) |
C1—C2—C3—C8 | −179.1 (2) | C10—N2—C12—O1 | −179.33 (18) |
C9—C2—C3—C8 | 4.4 (4) | C11—N2—C12—C13 | 176.58 (18) |
C1—C2—C3—C4 | 0.5 (2) | C10—N2—C12—C13 | −0.2 (3) |
C9—C2—C3—C4 | −176.03 (19) | O1—C12—C13—C18 | 81.0 (2) |
C1—N1—C4—C5 | −179.0 (2) | N2—C12—C13—C18 | −98.1 (2) |
C1—N1—C4—C3 | 0.6 (2) | O1—C12—C13—C14 | −97.0 (2) |
C8—C3—C4—N1 | 179.03 (18) | N2—C12—C13—C14 | 83.9 (2) |
C2—C3—C4—N1 | −0.7 (2) | C19—N3—C14—C15 | −12.8 (3) |
C8—C3—C4—C5 | −1.4 (3) | C19—N3—C14—C13 | 169.64 (18) |
C2—C3—C4—C5 | 178.93 (19) | C18—C13—C14—N3 | 178.39 (18) |
N1—C4—C5—C6 | 179.8 (2) | C12—C13—C14—N3 | −3.6 (3) |
C3—C4—C5—C6 | 0.4 (3) | C18—C13—C14—C15 | 0.8 (3) |
C4—C5—C6—C7 | 0.9 (4) | C12—C13—C14—C15 | 178.76 (17) |
C5—C6—C7—C8 | −1.1 (4) | N3—C14—C15—C16 | −177.4 (2) |
C6—C7—C8—C3 | 0.1 (3) | C13—C14—C15—C16 | 0.2 (3) |
C4—C3—C8—C7 | 1.1 (3) | C14—C15—C16—C17 | −1.1 (4) |
C2—C3—C8—C7 | −179.3 (2) | C15—C16—C17—C18 | 1.1 (4) |
C1—C2—C9—C10 | −95.3 (3) | C14—C13—C18—C17 | −0.9 (3) |
C3—C2—C9—C10 | 80.5 (3) | C12—C13—C18—C17 | −178.9 (2) |
C12—N2—C10—C9 | 95.9 (2) | C16—C17—C18—C13 | −0.1 (4) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1A···O1i | 0.86 | 1.99 | 2.824 (3) | 164 |
N3—H3A···O1ii | 0.86 | 2.39 | 2.991 (4) | 128 |
Symmetry codes: (i) x+1, y−1, z; (ii) −x, −y+1, −z+1. |
Experimental details
Crystal data | |
Chemical formula | C19H21N3O |
Mr | 307.39 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 291 |
a, b, c (Å) | 8.958 (2), 9.886 (2), 10.616 (2) |
α, β, γ (°) | 84.076 (4), 76.276 (4), 66.746 (3) |
V (Å3) | 839.0 (3) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.08 |
Crystal size (mm) | 0.45 × 0.36 × 0.30 |
Data collection | |
Diffractometer | Bruker SMART CCD 1000 diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 2004) |
Tmin, Tmax | 0.661, 1.000 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 4931, 3424, 2149 |
Rint | 0.017 |
(sin θ/λ)max (Å−1) | 0.627 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.049, 0.146, 1.04 |
No. of reflections | 3424 |
No. of parameters | 211 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.35, −0.22 |
Computer programs: SMART (Bruker, 1998), SMART and SAINT (Bruker, 1998), XPREP in SHELXTL (Sheldrick, 2008), XP in SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1A···O1i | 0.860 | 1.986 | 2.824 (3) | 164.3 |
N3—H3A···O1ii | 0.860 | 2.385 | 2.991 (4) | 127.8 |
Symmetry codes: (i) x+1, y−1, z; (ii) −x, −y+1, −z+1. |
Acknowledgements
This work was supported by grants from the New Century Excellent Talents Scheme of the Ministry of Education (NCET-08–0612), the National Science Foundation of China (30801433), the Guangdong High Level Talent Scheme and the Fundamental Research Funds for the Central Universities (21609202).
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The title compound was isolated from Evodia rutaecarpa which was purchased in Japan three decades ago and its structure was determined by chemical and spectral means (Shoji et al., 1988). Since then, it was also isolated from the same herb collected in different locations of China (Tang et al., 1997; Zuo et al., 2003). Rapid detection of evodiamide and related alkaloids by LC–MS was reported (Zhou et al., 2006). It was considered a precursor of evodiamine whose crystal structure was reported (Fujii et al., 2000); however, the crystal structure of the title compound was not reported yet.
During the course of investigation of the bioactive compounds from Traditional Chinese Medicine, the title compound was isolated from Evodia rutaecarpa collected in Guangdong province of China. The colorless prisms of crystals were obtained from a methanol solution. It contains an indole ring, an amide functional group and a benzene ring (Fig. 1). Both the indole and benzene rings are planar with a mean derivation of 0.0094 (4) Å and 0.0077 (3) Å, respectively. The dihedral angle between these two planes is 78.24 (9)°. The amide carbonyl plane is roughly parallel to the indole ring with a dihedral angle of 7.0 (2)°, but makes a dihedral angle of 82.9 (3)° with the benzene ring C13-C18. Intermolecular N—H···O hydrogen-bonding interactions (Table 1) involving the amine and carbonyl groups give a three-dimensional network (Fig. 2).