organic compounds
1-[(Cyclopropylmethoxy)methyl]-5-ethyl-6-(4-methylbenzyl)-1,2,3,4-tetrahydropyrimidine-2,4-dione
aDepartment of Pharmaceutical Chemistry, College of Pharmacy, King Saud University, Riyadh 11451, Saudi Arabia, bDepartment of Chemistry, University of Malaya, 50603 Kuala Lumpur, Malaysia, and cChemistry Department, Faculty of Science, King Abdulaziz University, PO Box 80203 Jeddah, Saudi Arabia
*Correspondence e-mail: seikweng@um.edu.my
The pyrimidine ring in the title compound, C19H24N2O3, is nearly planar (r.m.s. deviation = 0.008 Å); the C atom at the 5-position deviates by 0.054 (3) Å from the mean plane and the C atom at the 6-position by 0.006 (3) Å in the opposite direction. The benzene ring is approximately perpendicular to the pyrimidine ring [dihedral angle = 83.90 (10)°]. The amino group is hydrogen-bond donor to the exocyclic O atom at the 2-position of an adjacent molecule, the hydrogen bond generating an inversion dimer. The cyclopropyl ring is disordered over two sets of sites with the major component having 71.5 (4)% occupancy.
Experimental
Crystal data
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Refinement
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Data collection: CrysAlis PRO (Agilent, 2010); cell CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: X-SEED (Barbour, 2001); software used to prepare material for publication: publCIF (Westrip, 2010).
Supporting information
10.1107/S1600536811055681/xu5423sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536811055681/xu5423Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536811055681/xu5423Isup3.cml
The compound (Scheme I) was synthesized by using a reported method (El-Brollosy et al., 2009), and was recrystallized from ethanol.
Carbon-bound H-atoms were placed in calculated positions [C–H 0.95 to 0.98 Å, Uiso(H) 1.2 to 1.5Ueq(C)] and were included in the
in the riding model approximation.The amino H-atom was located in a difference Fourier map, and was refined with a distance restraint of N–H 0.88±0.01 Å; its temperature factor was refined.
The cyclopropyl ring is disordered over two positions. The pair of Cmethylene–Ccyclopropyl bond distances were restrained to within 0.01±0.01 Å of each other, as were the bond distances of the ring itself. The temperature factors of the primed were set to those of the umprimed ones, and the anisotropic temperature factors were restrained to be nearly isotropic.
Data collection: CrysAlis PRO (Agilent, 2010); cell
CrysAlis PRO (Agilent, 2010); data reduction: CrysAlis PRO (Agilent, 2010); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: X-SEED (Barbour, 2001); software used to prepare material for publication: publCIF (Westrip, 2010).C19H24N2O3 | F(000) = 1408 |
Mr = 328.40 | Dx = 1.252 Mg m−3 |
Monoclinic, C2/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -C 2yc | Cell parameters from 1703 reflections |
a = 15.6080 (13) Å | θ = 2.6–27.5° |
b = 8.1330 (6) Å | µ = 0.09 mm−1 |
c = 27.496 (2) Å | T = 100 K |
β = 93.397 (7)° | Irregular, colorless |
V = 3484.2 (5) Å3 | 0.25 × 0.20 × 0.15 mm |
Z = 8 |
Agilent SuperNova Dual diffractometer with an Atlas detector | 4006 independent reflections |
Radiation source: SuperNova (Mo) X-ray Source | 2446 reflections with I > 2σ(I) |
Mirror monochromator | Rint = 0.044 |
Detector resolution: 10.4041 pixels mm-1 | θmax = 27.6°, θmin = 2.6° |
ω scan | h = −20→19 |
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2010) | k = −7→10 |
Tmin = 0.979, Tmax = 0.987 | l = −35→21 |
7060 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.061 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.155 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.06 | w = 1/[σ2(Fo2) + (0.0471P)2 + 1.5059P] where P = (Fo2 + 2Fc2)/3 |
4006 reflections | (Δ/σ)max = 0.001 |
232 parameters | Δρmax = 0.22 e Å−3 |
20 restraints | Δρmin = −0.26 e Å−3 |
C19H24N2O3 | V = 3484.2 (5) Å3 |
Mr = 328.40 | Z = 8 |
Monoclinic, C2/c | Mo Kα radiation |
a = 15.6080 (13) Å | µ = 0.09 mm−1 |
b = 8.1330 (6) Å | T = 100 K |
c = 27.496 (2) Å | 0.25 × 0.20 × 0.15 mm |
β = 93.397 (7)° |
Agilent SuperNova Dual diffractometer with an Atlas detector | 4006 independent reflections |
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2010) | 2446 reflections with I > 2σ(I) |
Tmin = 0.979, Tmax = 0.987 | Rint = 0.044 |
7060 measured reflections |
R[F2 > 2σ(F2)] = 0.061 | 20 restraints |
wR(F2) = 0.155 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.06 | Δρmax = 0.22 e Å−3 |
4006 reflections | Δρmin = −0.26 e Å−3 |
232 parameters |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
O1 | 0.50675 (10) | 0.53293 (18) | 0.43772 (5) | 0.0306 (4) | |
O2 | 0.72573 (10) | 0.51944 (19) | 0.55353 (6) | 0.0337 (4) | |
O3 | 0.61688 (10) | 0.75562 (18) | 0.34641 (5) | 0.0322 (4) | |
N1 | 0.61833 (12) | 0.5257 (2) | 0.49464 (7) | 0.0252 (4) | |
H1 | 0.5798 (12) | 0.508 (3) | 0.5165 (7) | 0.036 (7)* | |
N2 | 0.64326 (12) | 0.5688 (2) | 0.41308 (6) | 0.0251 (4) | |
C1 | 0.58460 (15) | 0.5419 (3) | 0.44798 (8) | 0.0256 (5) | |
C2 | 0.70469 (15) | 0.5330 (2) | 0.51006 (8) | 0.0260 (5) | |
C3 | 0.76385 (15) | 0.5573 (3) | 0.47165 (8) | 0.0261 (5) | |
C4 | 0.73229 (15) | 0.5764 (2) | 0.42504 (8) | 0.0253 (5) | |
C5 | 0.85735 (15) | 0.5580 (3) | 0.48899 (9) | 0.0316 (6) | |
H5A | 0.8648 | 0.6277 | 0.5184 | 0.038* | |
H5B | 0.8913 | 0.6074 | 0.4634 | 0.038* | |
C6 | 0.89235 (16) | 0.3854 (3) | 0.50097 (10) | 0.0394 (6) | |
H6A | 0.9522 | 0.3936 | 0.5136 | 0.059* | |
H6B | 0.8891 | 0.3180 | 0.4714 | 0.059* | |
H6C | 0.8580 | 0.3344 | 0.5256 | 0.059* | |
C7 | 0.78826 (15) | 0.6035 (3) | 0.38279 (8) | 0.0306 (6) | |
H7A | 0.8437 | 0.6504 | 0.3954 | 0.037* | |
H7B | 0.7603 | 0.6858 | 0.3606 | 0.037* | |
C8 | 0.80601 (14) | 0.4493 (3) | 0.35365 (8) | 0.0286 (5) | |
C9 | 0.80732 (16) | 0.2935 (3) | 0.37445 (9) | 0.0354 (6) | |
H9 | 0.7922 | 0.2810 | 0.4072 | 0.043* | |
C10 | 0.83032 (16) | 0.1554 (3) | 0.34834 (8) | 0.0354 (6) | |
H10 | 0.8311 | 0.0506 | 0.3636 | 0.042* | |
C11 | 0.85223 (15) | 0.1686 (3) | 0.30026 (8) | 0.0331 (6) | |
C12 | 0.84815 (15) | 0.3240 (3) | 0.27877 (9) | 0.0369 (6) | |
H12 | 0.8607 | 0.3357 | 0.2456 | 0.044* | |
C13 | 0.82606 (15) | 0.4618 (3) | 0.30501 (8) | 0.0340 (6) | |
H13 | 0.8246 | 0.5664 | 0.2896 | 0.041* | |
C14 | 0.87809 (17) | 0.0183 (3) | 0.27244 (9) | 0.0457 (7) | |
H14A | 0.9128 | 0.0518 | 0.2456 | 0.069* | |
H14B | 0.8265 | −0.0390 | 0.2593 | 0.069* | |
H14C | 0.9117 | −0.0554 | 0.2944 | 0.069* | |
C15 | 0.60855 (15) | 0.5928 (3) | 0.36212 (8) | 0.0285 (5) | |
H15A | 0.6393 | 0.5192 | 0.3404 | 0.034* | |
H15B | 0.5471 | 0.5617 | 0.3597 | 0.034* | |
C16 | 0.55665 (16) | 0.8680 (3) | 0.36619 (9) | 0.0326 (6) | |
H16A | 0.5479 | 0.8404 | 0.4006 | 0.039* | 0.715 (4) |
H16B | 0.5006 | 0.8618 | 0.3474 | 0.039* | 0.715 (4) |
H16C | 0.5778 | 0.8995 | 0.3995 | 0.039* | 0.285 (4) |
H16D | 0.5009 | 0.8113 | 0.3686 | 0.039* | 0.285 (4) |
C17 | 0.5939 (2) | 1.0366 (4) | 0.36259 (12) | 0.0311 (8) | 0.715 (4) |
H17 | 0.6480 | 1.0583 | 0.3829 | 0.037* | 0.715 (4) |
C18 | 0.5821 (3) | 1.1319 (4) | 0.31577 (14) | 0.0401 (9) | 0.715 (4) |
H18A | 0.6284 | 1.2083 | 0.3074 | 0.048* | 0.715 (4) |
H18B | 0.5518 | 1.0771 | 0.2876 | 0.048* | 0.715 (4) |
C19 | 0.5321 (8) | 1.1730 (14) | 0.3578 (5) | 0.0357 (18) | 0.715 (4) |
H19A | 0.4703 | 1.1451 | 0.3558 | 0.043* | 0.715 (4) |
H19B | 0.5467 | 1.2760 | 0.3756 | 0.043* | 0.715 (4) |
C17' | 0.5430 (5) | 1.0209 (9) | 0.3360 (3) | 0.0311 (8) | 0.285 |
H17' | 0.5189 | 1.0059 | 0.3018 | 0.037* | 0.285 (4) |
C18' | 0.6114 (7) | 1.1436 (12) | 0.3439 (4) | 0.0401 (9) | 0.285 |
H18C | 0.6306 | 1.2021 | 0.3149 | 0.048* | 0.285 (4) |
H18D | 0.6579 | 1.1186 | 0.3688 | 0.048* | 0.285 (4) |
C19' | 0.521 (2) | 1.192 (4) | 0.3624 (15) | 0.0357 (18) | 0.285 |
H19C | 0.4865 | 1.2742 | 0.3436 | 0.043* | 0.285 (4) |
H19D | 0.5140 | 1.1902 | 0.3979 | 0.043* | 0.285 (4) |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0354 (10) | 0.0381 (9) | 0.0179 (8) | −0.0015 (7) | −0.0004 (7) | 0.0037 (7) |
O2 | 0.0468 (10) | 0.0358 (9) | 0.0176 (9) | −0.0012 (8) | −0.0050 (7) | 0.0035 (7) |
O3 | 0.0479 (10) | 0.0299 (8) | 0.0192 (9) | 0.0014 (8) | 0.0055 (7) | 0.0056 (7) |
N1 | 0.0359 (11) | 0.0256 (10) | 0.0140 (10) | −0.0014 (9) | 0.0009 (8) | 0.0030 (8) |
N2 | 0.0356 (11) | 0.0265 (9) | 0.0131 (9) | −0.0029 (8) | 0.0007 (8) | 0.0014 (7) |
C1 | 0.0378 (14) | 0.0231 (11) | 0.0158 (11) | −0.0015 (10) | 0.0010 (10) | 0.0027 (9) |
C2 | 0.0398 (14) | 0.0184 (10) | 0.0191 (12) | 0.0003 (10) | −0.0039 (10) | −0.0001 (9) |
C3 | 0.0359 (13) | 0.0212 (11) | 0.0210 (12) | −0.0011 (10) | −0.0005 (10) | 0.0005 (9) |
C4 | 0.0352 (13) | 0.0181 (10) | 0.0226 (12) | −0.0026 (10) | 0.0009 (10) | 0.0005 (9) |
C5 | 0.0388 (14) | 0.0276 (12) | 0.0278 (13) | −0.0026 (11) | −0.0029 (10) | 0.0041 (10) |
C6 | 0.0416 (15) | 0.0349 (14) | 0.0408 (16) | 0.0035 (12) | −0.0052 (12) | 0.0027 (11) |
C7 | 0.0381 (14) | 0.0317 (12) | 0.0221 (13) | −0.0057 (11) | 0.0034 (10) | 0.0044 (10) |
C8 | 0.0297 (12) | 0.0378 (13) | 0.0183 (12) | −0.0035 (10) | 0.0008 (9) | −0.0004 (10) |
C9 | 0.0492 (16) | 0.0383 (14) | 0.0193 (13) | 0.0005 (12) | 0.0066 (11) | −0.0012 (10) |
C10 | 0.0508 (15) | 0.0362 (13) | 0.0191 (13) | 0.0040 (12) | 0.0018 (11) | −0.0009 (10) |
C11 | 0.0303 (13) | 0.0510 (15) | 0.0177 (12) | 0.0049 (11) | −0.0034 (9) | −0.0066 (11) |
C12 | 0.0370 (14) | 0.0591 (17) | 0.0148 (12) | −0.0020 (12) | 0.0027 (10) | 0.0015 (11) |
C13 | 0.0366 (13) | 0.0446 (14) | 0.0205 (13) | −0.0051 (12) | −0.0001 (10) | 0.0044 (11) |
C14 | 0.0458 (16) | 0.0653 (18) | 0.0256 (14) | 0.0110 (14) | −0.0011 (12) | −0.0125 (13) |
C15 | 0.0421 (14) | 0.0308 (12) | 0.0124 (11) | −0.0009 (11) | −0.0007 (10) | 0.0016 (9) |
C16 | 0.0436 (15) | 0.0329 (13) | 0.0211 (13) | 0.0016 (11) | 0.0018 (10) | 0.0042 (10) |
C17 | 0.0378 (18) | 0.0338 (17) | 0.0212 (17) | −0.0049 (15) | −0.0034 (12) | 0.0026 (14) |
C18 | 0.058 (2) | 0.0379 (18) | 0.024 (2) | 0.0008 (18) | 0.0071 (16) | 0.0057 (18) |
C19 | 0.045 (4) | 0.025 (3) | 0.038 (3) | 0.006 (2) | 0.009 (2) | −0.004 (2) |
C17' | 0.0378 (18) | 0.0338 (17) | 0.0212 (17) | −0.0049 (15) | −0.0034 (12) | 0.0026 (14) |
C18' | 0.058 (2) | 0.0379 (18) | 0.024 (2) | 0.0008 (18) | 0.0071 (16) | 0.0057 (18) |
C19' | 0.045 (4) | 0.025 (3) | 0.038 (3) | 0.006 (2) | 0.009 (2) | −0.004 (2) |
O1—C1 | 1.233 (3) | C12—C13 | 1.387 (3) |
O2—C2 | 1.226 (2) | C12—H12 | 0.9500 |
O3—C15 | 1.401 (3) | C13—H13 | 0.9500 |
O3—C16 | 1.440 (3) | C14—H14A | 0.9800 |
N1—C1 | 1.364 (3) | C14—H14B | 0.9800 |
N1—C2 | 1.390 (3) | C14—H14C | 0.9800 |
N1—H1 | 0.887 (10) | C15—H15A | 0.9900 |
N2—C1 | 1.382 (3) | C15—H15B | 0.9900 |
N2—C4 | 1.410 (3) | C16—C17 | 1.495 (4) |
N2—C15 | 1.485 (3) | C16—C17' | 1.503 (7) |
C2—C3 | 1.457 (3) | C16—H16A | 0.9900 |
C3—C4 | 1.354 (3) | C16—H16B | 0.9900 |
C3—C5 | 1.508 (3) | C16—H16C | 0.9900 |
C4—C7 | 1.511 (3) | C16—H16D | 0.9900 |
C5—C6 | 1.535 (3) | C17—C19 | 1.471 (12) |
C5—H5A | 0.9900 | C17—C18 | 1.505 (5) |
C5—H5B | 0.9900 | C17—H17 | 1.0000 |
C6—H6A | 0.9800 | C18—C19 | 1.472 (12) |
C6—H6B | 0.9800 | C18—H18A | 0.9900 |
C6—H6C | 0.9800 | C18—H18B | 0.9900 |
C7—C8 | 1.523 (3) | C19—H19A | 0.9900 |
C7—H7A | 0.9900 | C19—H19B | 0.9900 |
C7—H7B | 0.9900 | C17'—C18' | 1.468 (14) |
C8—C9 | 1.390 (3) | C17'—C19' | 1.61 (3) |
C8—C13 | 1.395 (3) | C17'—H17' | 1.0000 |
C9—C10 | 1.391 (3) | C18'—C19' | 1.57 (3) |
C9—H9 | 0.9500 | C18'—H18C | 0.9900 |
C10—C11 | 1.389 (3) | C18'—H18D | 0.9900 |
C10—H10 | 0.9500 | C19'—H19C | 0.9900 |
C11—C12 | 1.395 (3) | C19'—H19D | 0.9900 |
C11—C14 | 1.509 (3) | ||
C15—O3—C16 | 114.11 (17) | H14A—C14—H14C | 109.5 |
C1—N1—C2 | 126.6 (2) | H14B—C14—H14C | 109.5 |
C1—N1—H1 | 114.4 (16) | O3—C15—N2 | 112.32 (17) |
C2—N1—H1 | 119.0 (16) | O3—C15—H15A | 109.1 |
C1—N2—C4 | 121.93 (18) | N2—C15—H15A | 109.1 |
C1—N2—C15 | 117.14 (18) | O3—C15—H15B | 109.1 |
C4—N2—C15 | 120.92 (18) | N2—C15—H15B | 109.1 |
O1—C1—N1 | 122.0 (2) | H15A—C15—H15B | 107.9 |
O1—C1—N2 | 122.3 (2) | O3—C16—C17 | 107.0 (2) |
N1—C1—N2 | 115.7 (2) | O3—C16—C17' | 113.0 (4) |
O2—C2—N1 | 119.5 (2) | O3—C16—H16A | 110.3 |
O2—C2—C3 | 125.1 (2) | C17—C16—H16A | 110.3 |
N1—C2—C3 | 115.44 (19) | C17'—C16—H16A | 133.8 |
C4—C3—C2 | 119.4 (2) | O3—C16—H16B | 110.3 |
C4—C3—C5 | 126.1 (2) | C17—C16—H16B | 110.3 |
C2—C3—C5 | 114.5 (2) | H16A—C16—H16B | 108.6 |
C3—C4—N2 | 120.9 (2) | O3—C16—H16C | 109.0 |
C3—C4—C7 | 123.4 (2) | C17—C16—H16C | 73.4 |
N2—C4—C7 | 115.69 (19) | C17'—C16—H16C | 109.0 |
C3—C5—C6 | 112.95 (19) | O3—C16—H16D | 109.0 |
C3—C5—H5A | 109.0 | C17'—C16—H16D | 109.0 |
C6—C5—H5A | 109.0 | H16C—C16—H16D | 107.8 |
C3—C5—H5B | 109.0 | C19—C17—C16 | 116.2 (5) |
C6—C5—H5B | 109.0 | C19—C17—C18 | 59.3 (6) |
H5A—C5—H5B | 107.8 | C16—C17—C18 | 120.0 (3) |
C5—C6—H6A | 109.5 | C19—C17—H17 | 116.3 |
C5—C6—H6B | 109.5 | C16—C17—H17 | 116.3 |
H6A—C6—H6B | 109.5 | C18—C17—H17 | 116.3 |
C5—C6—H6C | 109.5 | C19—C18—C17 | 59.2 (6) |
H6A—C6—H6C | 109.5 | C19—C18—H18A | 117.8 |
H6B—C6—H6C | 109.5 | C17—C18—H18A | 117.8 |
C4—C7—C8 | 114.55 (18) | C19—C18—H18B | 117.8 |
C4—C7—H7A | 108.6 | C17—C18—H18B | 117.8 |
C8—C7—H7A | 108.6 | H18A—C18—H18B | 115.0 |
C4—C7—H7B | 108.6 | C18—C19—C17 | 61.5 (4) |
C8—C7—H7B | 108.6 | C18—C19—H19A | 117.6 |
H7A—C7—H7B | 107.6 | C17—C19—H19A | 117.6 |
C9—C8—C13 | 117.5 (2) | C18—C19—H19B | 117.6 |
C9—C8—C7 | 122.2 (2) | C17—C19—H19B | 117.6 |
C13—C8—C7 | 120.2 (2) | H19A—C19—H19B | 114.7 |
C8—C9—C10 | 121.4 (2) | C18'—C17'—C16 | 113.8 (7) |
C8—C9—H9 | 119.3 | C18'—C17'—C19' | 61.3 (12) |
C10—C9—H9 | 119.3 | C16—C17'—C19' | 119.4 (16) |
C11—C10—C9 | 120.9 (2) | C18'—C17'—H17' | 116.8 |
C11—C10—H10 | 119.5 | C16—C17'—H17' | 116.8 |
C9—C10—H10 | 119.5 | C19'—C17'—H17' | 116.8 |
C10—C11—C12 | 117.7 (2) | C17'—C18'—C19' | 63.9 (12) |
C10—C11—C14 | 120.5 (2) | C17'—C18'—H18C | 117.4 |
C12—C11—C14 | 121.7 (2) | C19'—C18'—H18C | 117.4 |
C13—C12—C11 | 121.2 (2) | C17'—C18'—H18D | 117.4 |
C13—C12—H12 | 119.4 | C19'—C18'—H18D | 117.4 |
C11—C12—H12 | 119.4 | H18C—C18'—H18D | 114.4 |
C12—C13—C8 | 121.1 (2) | C18'—C19'—C17' | 54.9 (12) |
C12—C13—H13 | 119.5 | C18'—C19'—H19C | 118.3 |
C8—C13—H13 | 119.5 | C17'—C19'—H19C | 118.3 |
C11—C14—H14A | 109.5 | C18'—C19'—H19D | 118.3 |
C11—C14—H14B | 109.5 | C17'—C19'—H19D | 118.3 |
H14A—C14—H14B | 109.5 | H19C—C19'—H19D | 115.5 |
C11—C14—H14C | 109.5 | ||
C2—N1—C1—O1 | 179.7 (2) | C7—C8—C9—C10 | −174.8 (2) |
C2—N1—C1—N2 | −0.2 (3) | C8—C9—C10—C11 | −0.5 (4) |
C4—N2—C1—O1 | −178.97 (19) | C9—C10—C11—C12 | −1.6 (4) |
C15—N2—C1—O1 | 2.1 (3) | C9—C10—C11—C14 | 179.3 (2) |
C4—N2—C1—N1 | 0.9 (3) | C10—C11—C12—C13 | 2.3 (4) |
C15—N2—C1—N1 | −177.95 (17) | C14—C11—C12—C13 | −178.6 (2) |
C1—N1—C2—O2 | 178.59 (19) | C11—C12—C13—C8 | −0.9 (4) |
C1—N1—C2—C3 | −1.3 (3) | C9—C8—C13—C12 | −1.3 (3) |
O2—C2—C3—C4 | −177.7 (2) | C7—C8—C13—C12 | 175.6 (2) |
N1—C2—C3—C4 | 2.2 (3) | C16—O3—C15—N2 | −75.0 (2) |
O2—C2—C3—C5 | 2.4 (3) | C1—N2—C15—O3 | 109.0 (2) |
N1—C2—C3—C5 | −177.65 (17) | C4—N2—C15—O3 | −69.9 (2) |
C2—C3—C4—N2 | −1.7 (3) | C15—O3—C16—C17 | 158.4 (2) |
C5—C3—C4—N2 | 178.21 (19) | C15—O3—C16—C17' | −158.1 (4) |
C2—C3—C4—C7 | 179.5 (2) | O3—C16—C17—C19 | 151.7 (6) |
C5—C3—C4—C7 | −0.7 (3) | C17'—C16—C17—C19 | 45.9 (8) |
C1—N2—C4—C3 | 0.0 (3) | O3—C16—C17—C18 | 83.6 (3) |
C15—N2—C4—C3 | 178.87 (18) | C17'—C16—C17—C18 | −22.2 (5) |
C1—N2—C4—C7 | 178.97 (19) | C16—C17—C18—C19 | 104.5 (6) |
C15—N2—C4—C7 | −2.2 (3) | C16—C17—C19—C18 | −110.9 (4) |
C4—C3—C5—C6 | −104.2 (2) | O3—C16—C17'—C18' | −79.3 (7) |
C2—C3—C5—C6 | 75.6 (3) | C17—C16—C17'—C18' | 10.5 (5) |
C3—C4—C7—C8 | 98.1 (2) | O3—C16—C17'—C19' | −148.5 (14) |
N2—C4—C7—C8 | −80.8 (2) | C17—C16—C17'—C19' | −58.7 (15) |
C4—C7—C8—C9 | −28.4 (3) | C16—C17'—C18'—C19' | −111.8 (18) |
C4—C7—C8—C13 | 154.9 (2) | C16—C17'—C19'—C18' | 102.6 (12) |
C13—C8—C9—C10 | 1.9 (4) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O1i | 0.89 (1) | 1.93 (1) | 2.816 (2) | 178 (2) |
Symmetry code: (i) −x+1, −y+1, −z+1. |
Experimental details
Crystal data | |
Chemical formula | C19H24N2O3 |
Mr | 328.40 |
Crystal system, space group | Monoclinic, C2/c |
Temperature (K) | 100 |
a, b, c (Å) | 15.6080 (13), 8.1330 (6), 27.496 (2) |
β (°) | 93.397 (7) |
V (Å3) | 3484.2 (5) |
Z | 8 |
Radiation type | Mo Kα |
µ (mm−1) | 0.09 |
Crystal size (mm) | 0.25 × 0.20 × 0.15 |
Data collection | |
Diffractometer | Agilent SuperNova Dual diffractometer with an Atlas detector |
Absorption correction | Multi-scan (CrysAlis PRO; Agilent, 2010) |
Tmin, Tmax | 0.979, 0.987 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 7060, 4006, 2446 |
Rint | 0.044 |
(sin θ/λ)max (Å−1) | 0.651 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.061, 0.155, 1.06 |
No. of reflections | 4006 |
No. of parameters | 232 |
No. of restraints | 20 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.22, −0.26 |
Computer programs: CrysAlis PRO (Agilent, 2010), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), X-SEED (Barbour, 2001), publCIF (Westrip, 2010).
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O1i | 0.89 (1) | 1.93 (1) | 2.816 (2) | 178 (2) |
Symmetry code: (i) −x+1, −y+1, −z+1. |
Acknowledgements
We thank the Deanship of Scientific Research and the Research Center of the College of Pharmacy, King Saud University, and the University of Malaya for supporting this study.
References
Agilent (2010). CrysAlis PRO. Agilent Technologies, Yarnton, England. Google Scholar
Barbour, L. J. (2001). J. Supramol. Chem. 1, 189–191. CrossRef CAS Google Scholar
El-Brollosy, N. R., Al-Deeb, O. A., El-Emam, A. A., Pedersen, E. B., La Colla, P., Collu, G., Sanna, G. & Loddo, R. (2009). Arch. Pharm. Chem. Life Sci. 342, 663–670. CAS Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Westrip, S. P. (2010). J. Appl. Cryst. 43, 920–925. Web of Science CrossRef CAS IUCr Journals Google Scholar
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The compound (Scheme I) was synthesized for an evaluation of its anti-viral activity against HIV-1 (El-Brollosy et al., 2009). The pyrimidine ring is nearly planar; the C atom at the 5-position deviates by 0.054 (3) Å from the mean plane and the C atom at the 6-position by 0.006 (3) Å in the opposite direction (Fig. 1). The amino group is hydrogen-bond donor to the exocyclic O atom at the 2-position, the hydrogen bond generating a centrosymmetric dimer (Table 1, Fig. 2).