organic compounds
5-Bromo-3-cyclopentylsulfinyl-2,7-dimethyl-1-benzofuran
aDepartment of Chemistry, Dongeui University, San 24 Kaya-dong Busanjin-gu, Busan 614-714, Republic of Korea, and bDepartment of Chemistry, Pukyong National University, 599-1 Daeyeon 3-dong, Nam-gu, Busan 608-737, Republic of Korea
*Correspondence e-mail: uklee@pknu.ac.kr
In the title compound, C15H17BrO2S, the cyclopentyl ring adopts an In the crystal, molecules are linked by weak C—H⋯O hydrogen bonds. A slipped π–π interaction occurs between the furan and benzene rings of adjacent molecules [centroid–centroid distance = 3.892 (3) Å and slippage = 1.786 (3) Å]. The also exhibits a weak C—Br⋯π [2.919 (3) Å] interaction.
Related literature
For the biological activity of benzofuran compounds, see: Aslam et al. (2009); Galal et al. (2009); Khan et al. (2005). For natural products with benzofuran rings, see: Akgul & Anil (2003); Soekamto et al. (2003). For the crystal structures of related compounds, see: Choi et al. (2011a,b).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2009); cell SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997) and DIAMOND (Brandenburg, 1998); software used to prepare material for publication: SHELXL97.
Supporting information
10.1107/S1600536811056091/xu5434sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536811056091/xu5434Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536811056091/xu5434Isup3.cml
77% 3-chloroperoxybenzoic acid (202 mg, 0.9 mmol) was added in small portions to a stirred solution of 5-bromo-3-cyclopentylsulfanyl-2,7-dimethyl-1-benzofuran (260 mg, 0.8 mmol) in dichloromethane (30 mL) at 273 K. After being stirred at room temperature for 6 h, the mixture was washed with saturated sodium bicarbonate solution and the organic layer was separated, dried over magnesium sulfate, filtered and concentrated at reduced pressure. The residue was purified by
(hexane–ethyl acetate, 1:1 v/v) to afford the title compound as a colorless solid [yield 67%, m.p. 415–416 K; Rf = 0.51 (hexane–ethyl acetate, 1:1 v/v)]. Single crystals suitable for X-ray diffraction were prepared by slow evaporation of a solution of the title compound in benzene at room temperature.All H atoms were positioned geometrically and refined using a riding model, with C—H = 0.95 Å for aryl, 1.00 Å for methine, 0.99 Å for methylene and 0.98 Å for methyl H atoms, respectively. Uiso(H) =1.2Ueq(C) for aryl, methine and methylene, and 1.5Ueq(C) for methyl H atoms.
Data collection: APEX2 (Bruker, 2009); cell
SAINT (Bruker, 2009); data reduction: SAINT (Bruker, 2009); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997) and DIAMOND (Brandenburg, 1998); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).C15H17BrO2S | F(000) = 1392 |
Mr = 341.26 | Dx = 1.583 Mg m−3 |
Orthorhombic, Pbcn | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2n 2ab | Cell parameters from 2605 reflections |
a = 19.5624 (8) Å | θ = 2.6–23.7° |
b = 8.3501 (4) Å | µ = 3.01 mm−1 |
c = 17.5346 (7) Å | T = 173 K |
V = 2864.2 (2) Å3 | Block, colourless |
Z = 8 | 0.36 × 0.19 × 0.04 mm |
Bruker SMART APEXII CCD diffractometer | 3561 independent reflections |
Radiation source: rotating anode | 2232 reflections with I > 2σ(I) |
Graphite multilayer monochromator | Rint = 0.052 |
Detector resolution: 10.0 pixels mm-1 | θmax = 28.4°, θmin = 2.1° |
ϕ and ω scans | h = −18→25 |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | k = −11→11 |
Tmin = 0.414, Tmax = 0.899 | l = −23→17 |
14696 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.043 | Hydrogen site location: difference Fourier map |
wR(F2) = 0.094 | H-atom parameters constrained |
S = 1.01 | w = 1/[σ2(Fo2) + (0.0345P)2 + 1.0227P] where P = (Fo2 + 2Fc2)/3 |
3561 reflections | (Δ/σ)max = 0.001 |
174 parameters | Δρmax = 0.43 e Å−3 |
0 restraints | Δρmin = −0.51 e Å−3 |
C15H17BrO2S | V = 2864.2 (2) Å3 |
Mr = 341.26 | Z = 8 |
Orthorhombic, Pbcn | Mo Kα radiation |
a = 19.5624 (8) Å | µ = 3.01 mm−1 |
b = 8.3501 (4) Å | T = 173 K |
c = 17.5346 (7) Å | 0.36 × 0.19 × 0.04 mm |
Bruker SMART APEXII CCD diffractometer | 3561 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | 2232 reflections with I > 2σ(I) |
Tmin = 0.414, Tmax = 0.899 | Rint = 0.052 |
14696 measured reflections |
R[F2 > 2σ(F2)] = 0.043 | 0 restraints |
wR(F2) = 0.094 | H-atom parameters constrained |
S = 1.01 | Δρmax = 0.43 e Å−3 |
3561 reflections | Δρmin = −0.51 e Å−3 |
174 parameters |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Br1 | 0.746477 (15) | 0.35697 (4) | 0.531719 (18) | 0.04220 (13) | |
S1 | 0.58692 (4) | 0.79730 (10) | 0.30668 (4) | 0.0302 (2) | |
O1 | 0.49506 (9) | 0.7539 (2) | 0.50628 (9) | 0.0242 (4) | |
O2 | 0.61660 (12) | 0.6477 (3) | 0.27475 (11) | 0.0467 (6) | |
C1 | 0.55893 (14) | 0.7536 (3) | 0.39992 (14) | 0.0224 (6) | |
C2 | 0.59386 (14) | 0.6560 (3) | 0.45635 (14) | 0.0210 (6) | |
C3 | 0.65304 (14) | 0.5643 (3) | 0.45788 (14) | 0.0233 (6) | |
H3 | 0.6819 | 0.5542 | 0.4146 | 0.028* | |
C4 | 0.66740 (13) | 0.4885 (3) | 0.52599 (15) | 0.0249 (6) | |
C5 | 0.62665 (13) | 0.5023 (3) | 0.59087 (15) | 0.0236 (6) | |
H5 | 0.6400 | 0.4501 | 0.6366 | 0.028* | |
C6 | 0.56704 (14) | 0.5911 (3) | 0.58952 (15) | 0.0215 (6) | |
C7 | 0.55264 (13) | 0.6627 (3) | 0.52041 (14) | 0.0195 (6) | |
C8 | 0.50046 (14) | 0.8064 (3) | 0.43205 (15) | 0.0239 (6) | |
C9 | 0.52221 (14) | 0.6084 (3) | 0.65801 (15) | 0.0286 (7) | |
H9A | 0.5216 | 0.7208 | 0.6742 | 0.043* | |
H9B | 0.5400 | 0.5417 | 0.6995 | 0.043* | |
H9C | 0.4757 | 0.5742 | 0.6452 | 0.043* | |
C10 | 0.44272 (14) | 0.9041 (4) | 0.40406 (17) | 0.0332 (7) | |
H10A | 0.4490 | 0.9265 | 0.3496 | 0.050* | |
H10B | 0.4410 | 1.0053 | 0.4324 | 0.050* | |
H10C | 0.3999 | 0.8455 | 0.4116 | 0.050* | |
C11 | 0.65806 (14) | 0.9260 (3) | 0.33175 (15) | 0.0258 (7) | |
H11 | 0.6900 | 0.8687 | 0.3669 | 0.031* | |
C12 | 0.63212 (15) | 1.0808 (4) | 0.36924 (17) | 0.0356 (8) | |
H12A | 0.5815 | 1.0849 | 0.3686 | 0.043* | |
H12B | 0.6480 | 1.0883 | 0.4227 | 0.043* | |
C13 | 0.66218 (16) | 1.2156 (4) | 0.32140 (17) | 0.0371 (8) | |
H13A | 0.6312 | 1.3092 | 0.3205 | 0.044* | |
H13B | 0.7071 | 1.2495 | 0.3417 | 0.044* | |
C14 | 0.66965 (16) | 1.1439 (4) | 0.24250 (18) | 0.0385 (8) | |
H14A | 0.6252 | 1.1405 | 0.2156 | 0.046* | |
H14B | 0.7027 | 1.2055 | 0.2114 | 0.046* | |
C15 | 0.69583 (15) | 0.9771 (3) | 0.25871 (15) | 0.0298 (7) | |
H15A | 0.7459 | 0.9779 | 0.2669 | 0.036* | |
H15B | 0.6851 | 0.9037 | 0.2160 | 0.036* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Br1 | 0.0393 (2) | 0.0479 (2) | 0.0394 (2) | 0.01898 (17) | 0.00616 (15) | 0.00728 (15) |
S1 | 0.0354 (5) | 0.0370 (4) | 0.0182 (4) | −0.0105 (4) | −0.0025 (3) | 0.0023 (3) |
O1 | 0.0247 (11) | 0.0265 (11) | 0.0214 (10) | −0.0013 (10) | 0.0002 (8) | 0.0014 (8) |
O2 | 0.0728 (17) | 0.0374 (13) | 0.0298 (12) | −0.0144 (12) | 0.0162 (11) | −0.0126 (10) |
C1 | 0.0270 (16) | 0.0230 (15) | 0.0173 (14) | −0.0050 (13) | −0.0028 (12) | 0.0002 (11) |
C2 | 0.0232 (15) | 0.0227 (15) | 0.0169 (14) | −0.0049 (13) | −0.0009 (12) | −0.0021 (11) |
C3 | 0.0249 (16) | 0.0252 (15) | 0.0199 (15) | −0.0049 (13) | 0.0051 (12) | −0.0032 (12) |
C4 | 0.0235 (16) | 0.0217 (15) | 0.0296 (16) | 0.0029 (13) | −0.0017 (13) | −0.0022 (12) |
C5 | 0.0305 (16) | 0.0215 (14) | 0.0189 (14) | −0.0019 (13) | 0.0009 (12) | 0.0010 (12) |
C6 | 0.0267 (16) | 0.0178 (14) | 0.0199 (14) | −0.0047 (12) | 0.0018 (12) | −0.0041 (11) |
C7 | 0.0190 (15) | 0.0193 (14) | 0.0202 (14) | −0.0022 (12) | −0.0019 (12) | −0.0014 (11) |
C8 | 0.0270 (17) | 0.0226 (15) | 0.0219 (14) | −0.0063 (13) | −0.0070 (12) | 0.0015 (12) |
C9 | 0.0303 (17) | 0.0327 (17) | 0.0229 (15) | 0.0004 (14) | 0.0052 (13) | 0.0030 (12) |
C10 | 0.0351 (18) | 0.0300 (17) | 0.0345 (18) | −0.0006 (14) | −0.0069 (14) | 0.0026 (14) |
C11 | 0.0230 (16) | 0.0281 (16) | 0.0262 (15) | 0.0006 (13) | 0.0001 (13) | 0.0025 (12) |
C12 | 0.0340 (19) | 0.0309 (18) | 0.0419 (19) | −0.0032 (15) | 0.0092 (15) | −0.0070 (14) |
C13 | 0.0345 (19) | 0.0282 (18) | 0.049 (2) | −0.0037 (15) | 0.0022 (15) | −0.0062 (15) |
C14 | 0.040 (2) | 0.0314 (18) | 0.044 (2) | −0.0028 (15) | −0.0053 (15) | 0.0088 (15) |
C15 | 0.0290 (17) | 0.0310 (17) | 0.0295 (16) | −0.0032 (15) | 0.0038 (13) | 0.0040 (13) |
Br1—C4 | 1.900 (3) | C9—H9B | 0.9800 |
S1—O2 | 1.487 (2) | C9—H9C | 0.9800 |
S1—C1 | 1.762 (3) | C10—H10A | 0.9800 |
S1—C11 | 1.813 (3) | C10—H10B | 0.9800 |
O1—C8 | 1.378 (3) | C10—H10C | 0.9800 |
O1—C7 | 1.382 (3) | C11—C12 | 1.536 (4) |
C1—C8 | 1.349 (4) | C11—C15 | 1.539 (4) |
C1—C2 | 1.453 (4) | C11—H11 | 1.0000 |
C2—C7 | 1.384 (3) | C12—C13 | 1.521 (4) |
C2—C3 | 1.388 (4) | C12—H12A | 0.9900 |
C3—C4 | 1.380 (3) | C12—H12B | 0.9900 |
C3—H3 | 0.9500 | C13—C14 | 1.514 (4) |
C4—C5 | 1.394 (3) | C13—H13A | 0.9900 |
C5—C6 | 1.382 (4) | C13—H13B | 0.9900 |
C5—H5 | 0.9500 | C14—C15 | 1.512 (4) |
C6—C7 | 1.380 (3) | C14—H14A | 0.9900 |
C6—C9 | 1.494 (4) | C14—H14B | 0.9900 |
C8—C10 | 1.477 (4) | C15—H15A | 0.9900 |
C9—H9A | 0.9800 | C15—H15B | 0.9900 |
O2—S1—C1 | 107.27 (13) | C8—C10—H10B | 109.5 |
O2—S1—C11 | 106.84 (13) | H10A—C10—H10B | 109.5 |
C1—S1—C11 | 97.83 (12) | C8—C10—H10C | 109.5 |
C8—O1—C7 | 106.4 (2) | H10A—C10—H10C | 109.5 |
C8—C1—C2 | 107.3 (2) | H10B—C10—H10C | 109.5 |
C8—C1—S1 | 125.7 (2) | C12—C11—C15 | 106.4 (2) |
C2—C1—S1 | 127.0 (2) | C12—C11—S1 | 110.44 (19) |
C7—C2—C3 | 119.5 (2) | C15—C11—S1 | 109.33 (19) |
C7—C2—C1 | 104.8 (2) | C12—C11—H11 | 110.2 |
C3—C2—C1 | 135.6 (2) | C15—C11—H11 | 110.2 |
C4—C3—C2 | 116.0 (2) | S1—C11—H11 | 110.2 |
C4—C3—H3 | 122.0 | C13—C12—C11 | 105.0 (2) |
C2—C3—H3 | 122.0 | C13—C12—H12A | 110.8 |
C3—C4—C5 | 123.5 (3) | C11—C12—H12A | 110.8 |
C3—C4—Br1 | 118.4 (2) | C13—C12—H12B | 110.8 |
C5—C4—Br1 | 118.1 (2) | C11—C12—H12B | 110.8 |
C6—C5—C4 | 120.9 (2) | H12A—C12—H12B | 108.8 |
C6—C5—H5 | 119.6 | C14—C13—C12 | 104.4 (2) |
C4—C5—H5 | 119.6 | C14—C13—H13A | 110.9 |
C7—C6—C5 | 114.8 (2) | C12—C13—H13A | 110.9 |
C7—C6—C9 | 122.9 (2) | C14—C13—H13B | 110.9 |
C5—C6—C9 | 122.3 (2) | C12—C13—H13B | 110.9 |
C6—C7—O1 | 124.2 (2) | H13A—C13—H13B | 108.9 |
C6—C7—C2 | 125.2 (3) | C15—C14—C13 | 103.0 (2) |
O1—C7—C2 | 110.6 (2) | C15—C14—H14A | 111.2 |
C1—C8—O1 | 110.8 (2) | C13—C14—H14A | 111.2 |
C1—C8—C10 | 133.6 (3) | C15—C14—H14B | 111.2 |
O1—C8—C10 | 115.5 (2) | C13—C14—H14B | 111.2 |
C6—C9—H9A | 109.5 | H14A—C14—H14B | 109.1 |
C6—C9—H9B | 109.5 | C14—C15—C11 | 104.4 (2) |
H9A—C9—H9B | 109.5 | C14—C15—H15A | 110.9 |
C6—C9—H9C | 109.5 | C11—C15—H15A | 110.9 |
H9A—C9—H9C | 109.5 | C14—C15—H15B | 110.9 |
H9B—C9—H9C | 109.5 | C11—C15—H15B | 110.9 |
C8—C10—H10A | 109.5 | H15A—C15—H15B | 108.9 |
O2—S1—C1—C8 | −139.5 (2) | C3—C2—C7—C6 | 3.7 (4) |
C11—S1—C1—C8 | 110.1 (3) | C1—C2—C7—C6 | −177.7 (3) |
O2—S1—C1—C2 | 40.8 (3) | C3—C2—C7—O1 | −177.3 (2) |
C11—S1—C1—C2 | −69.6 (3) | C1—C2—C7—O1 | 1.3 (3) |
C8—C1—C2—C7 | −1.7 (3) | C2—C1—C8—O1 | 1.5 (3) |
S1—C1—C2—C7 | 178.1 (2) | S1—C1—C8—O1 | −178.30 (18) |
C8—C1—C2—C3 | 176.6 (3) | C2—C1—C8—C10 | −177.6 (3) |
S1—C1—C2—C3 | −3.6 (5) | S1—C1—C8—C10 | 2.6 (5) |
C7—C2—C3—C4 | −1.9 (4) | C7—O1—C8—C1 | −0.7 (3) |
C1—C2—C3—C4 | −179.9 (3) | C7—O1—C8—C10 | 178.6 (2) |
C2—C3—C4—C5 | −0.9 (4) | O2—S1—C11—C12 | −177.07 (19) |
C2—C3—C4—Br1 | 178.6 (2) | C1—S1—C11—C12 | −66.3 (2) |
C3—C4—C5—C6 | 2.1 (4) | O2—S1—C11—C15 | 66.2 (2) |
Br1—C4—C5—C6 | −177.4 (2) | C1—S1—C11—C15 | 177.0 (2) |
C4—C5—C6—C7 | −0.4 (4) | C15—C11—C12—C13 | −5.9 (3) |
C4—C5—C6—C9 | −180.0 (2) | S1—C11—C12—C13 | −124.4 (2) |
C5—C6—C7—O1 | 178.7 (2) | C11—C12—C13—C14 | 28.9 (3) |
C9—C6—C7—O1 | −1.7 (4) | C12—C13—C14—C15 | −41.2 (3) |
C5—C6—C7—C2 | −2.5 (4) | C13—C14—C15—C11 | 37.0 (3) |
C9—C6—C7—C2 | 177.1 (3) | C12—C11—C15—C14 | −19.3 (3) |
C8—O1—C7—C6 | 178.5 (2) | S1—C11—C15—C14 | 100.0 (2) |
C8—O1—C7—C2 | −0.4 (3) |
D—H···A | D—H | H···A | D···A | D—H···A |
C5—H5···O2i | 0.95 | 2.60 | 3.465 (3) | 152 |
C9—H9B···O2i | 0.98 | 2.55 | 3.489 (3) | 161 |
C10—H10B···O1ii | 0.98 | 2.60 | 3.480 (3) | 149 |
Symmetry codes: (i) x, −y+1, z+1/2; (ii) −x+1, −y+2, −z+1. |
Experimental details
Crystal data | |
Chemical formula | C15H17BrO2S |
Mr | 341.26 |
Crystal system, space group | Orthorhombic, Pbcn |
Temperature (K) | 173 |
a, b, c (Å) | 19.5624 (8), 8.3501 (4), 17.5346 (7) |
V (Å3) | 2864.2 (2) |
Z | 8 |
Radiation type | Mo Kα |
µ (mm−1) | 3.01 |
Crystal size (mm) | 0.36 × 0.19 × 0.04 |
Data collection | |
Diffractometer | Bruker SMART APEXII CCD diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2009) |
Tmin, Tmax | 0.414, 0.899 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 14696, 3561, 2232 |
Rint | 0.052 |
(sin θ/λ)max (Å−1) | 0.669 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.043, 0.094, 1.01 |
No. of reflections | 3561 |
No. of parameters | 174 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.43, −0.51 |
Computer programs: APEX2 (Bruker, 2009), SAINT (Bruker, 2009), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 (Farrugia, 1997) and DIAMOND (Brandenburg, 1998).
D—H···A | D—H | H···A | D···A | D—H···A |
C5—H5···O2i | 0.95 | 2.60 | 3.465 (3) | 152.0 |
C9—H9B···O2i | 0.98 | 2.55 | 3.489 (3) | 161.1 |
C10—H10B···O1ii | 0.98 | 2.60 | 3.480 (3) | 149.3 |
Symmetry codes: (i) x, −y+1, z+1/2; (ii) −x+1, −y+2, −z+1. |
Acknowledgements
This work was supported by the Blue-Bio Industry Regional Innovation Center (RIC08-06-07) at Dongeui University as an RIC program under the Ministry of Knowledge Economy and Busan City.
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Benzofuran derivatives have drawn much interest in view of their valuable biological properties such as antibacterial and antifungal, antitumor and antiviral, and antimicrobial activities (Aslam et al., 2009, Galal et al., 2009, Khan et al., 2005). These benzofuran derivatives occur in a wide range of natural products (Akgul & Anil, 2003; Soekamto et al., 2003). As a part of our continuing study of 5-bromo-2,7-dimethyl-1-benzofuran derivatives containing either 3-cyclohexylsulfinyl (Choi et al., 2011a) or 3-cyclohexylsulfonyl (Choi et al., 2011b) substituents, we report herein the crystal structure of the title compound.
In the title molecule (Fig. 1), the benzofuran unit is essentially planar, with a mean deviation of 0.020 (1) Å from the least-squares plane defined by the nine constituent atoms. The cyclopentyl ring is in the envelope form. The crystal packing (Fig. 2) is stabilized by weak intermolecular C–H···O hydrogen bonds (see, Table 1). The crystal packing (Fig. 3) is further stabilized by a weak intermolecular C—Br···π interaction between the bromine and the benzene ring of an adjacent molecule, with a C4—Br1···Cg2ii [2.919 (3) Å] (Cg2 is the centroid of the C2-C7 benzene ring). The crystal packing (Fig. 3) also exhibits a weak slipped π···π interaction between the furan and benzene rings of adjacent molecules, with a Cg1···Cg2i distance of 3.892 (4) Å and an interplanar distance of 3.458 (3) Å resulting in a slippage of 1.786 (3) Å (Cg1 is the centroid of the C1/C2/C7/O1/C8 furan ring).