organic compounds
(6S,7S,8S,8aS)-6-Ethyl-3-oxo-1,2,3,5,6,7,8,8a-octahydroindolizine-7,8-diyl diacetate
aInstitute of Analytical Chemistry, Faculty of Chemical and Food Technology, Slovak University of Technology, Radlinského 9, SK-812 37 Bratislava, Slovak Republic, and bInstitute of Organic Chemistry, Catalysis and Petrochemistry, Faculty of Chemical and Food Technology, Slovak University of Technology, Radlinského 9, SK-812 37 Bratislava, Slovak Republic
*Correspondence e-mail: viktor.vrabel@stuba.sk
In the molecular structure of the title compound, C14H21NO5, the six-membered ring of the indolizine moiety adopts a chair conformation. There are two independent molecules in the The oxopyrrolidine ring attached to the indolizine ring system is nearly planar, with mean deviations of 0.018 (3) and 0.010 (3) Å for the two molecules. The of the title compound was assigned from the synthesis.
Related literature
For indolizine derivatives, see: Gubin et al. (1992); Gupta et al. (2003); Liu et al. (2007); Medda et al. (2003); Molyneux & James (1982); Nash et al. (1988); Pearson & Guo (2001); Ruprecht et al. (1989); Smith et al. (2007); Teklu et al. (2005). For ring conformations, see: Cremer & Pople (1975). For the synthesis, see: Šafář et al. (2010). For related structures, see: Brown & Corbridge (1954); Pedersen (1967).
Experimental
Crystal data
|
Data collection: CrysAlis PRO (Oxford Diffraction, 2009); cell CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: DIAMOND (Brandenburg, 2001); software used to prepare material for publication: SHELXL97, PLATON (Spek, 2009) and WinGX (Farrugia, 1999).
Supporting information
10.1107/S1600536812005144/bq2336sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536812005144/bq2336Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536812005144/bq2336Isup3.cml
The title compound was prepared according to a standard protocol described in literature (Šafář et al., 2010).
All H atoms were positioned with idealized geometry using a riding model with C—H distances in the range 0.93 - 0.98 Å. The Uiso(H) values were set at 1.2 Ueq(C-aromatic) or 1.5 Ueq(C-methyl). The
could not be reliably determined for this compound using Mo radiation, and has been assigned according to the synthesis.Data collection: CrysAlis PRO (Oxford Diffraction, 2009); cell
CrysAlis PRO (Oxford Diffraction, 2009); data reduction: CrysAlis PRO (Oxford Diffraction, 2009); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: DIAMOND (Brandenburg, 2001); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008), PLATON (Spek, 2009) and WinGX (Farrugia, 1999).C14H21NO5 | F(000) = 608 |
Mr = 283.32 | Dx = 1.195 Mg m−3 |
Monoclinic, P21 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2yb | Cell parameters from 37222 reflections |
a = 11.5157 (2) Å | θ = 4.1–26.4° |
b = 9.8239 (1) Å | µ = 0.09 mm−1 |
c = 14.0922 (2) Å | T = 298 K |
β = 99.035 (2)° | Prism, colourless |
V = 1574.46 (4) Å3 | 0.40 × 0.30 × 0.20 mm |
Z = 4 |
Oxford Diffraction Gemini R CCD diffractometer | 3404 independent reflections |
Radiation source: fine-focus sealed tube | 2508 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.028 |
Detector resolution: 10.4340 pixels mm-1 | θmax = 26.4°, θmin = 4.1° |
Rotation method data acquisition using ω and ϕ scans | h = −14→14 |
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009) | k = −12→12 |
Tmin = 0.952, Tmax = 0.984 | l = −17→17 |
37222 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.037 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.104 | H-atom parameters constrained |
S = 1.03 | w = 1/[σ2(Fo2) + (0.0702P)2] where P = (Fo2 + 2Fc2)/3 |
3404 reflections | (Δ/σ)max < 0.001 |
361 parameters | Δρmax = 0.11 e Å−3 |
1 restraint | Δρmin = −0.14 e Å−3 |
C14H21NO5 | V = 1574.46 (4) Å3 |
Mr = 283.32 | Z = 4 |
Monoclinic, P21 | Mo Kα radiation |
a = 11.5157 (2) Å | µ = 0.09 mm−1 |
b = 9.8239 (1) Å | T = 298 K |
c = 14.0922 (2) Å | 0.40 × 0.30 × 0.20 mm |
β = 99.035 (2)° |
Oxford Diffraction Gemini R CCD diffractometer | 3404 independent reflections |
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009) | 2508 reflections with I > 2σ(I) |
Tmin = 0.952, Tmax = 0.984 | Rint = 0.028 |
37222 measured reflections |
R[F2 > 2σ(F2)] = 0.037 | 1 restraint |
wR(F2) = 0.104 | H-atom parameters constrained |
S = 1.03 | Δρmax = 0.11 e Å−3 |
3404 reflections | Δρmin = −0.14 e Å−3 |
361 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
C2 | 0.8545 (2) | −0.0286 (3) | 0.56842 (19) | 0.0737 (7) | |
C3 | 0.7241 (3) | −0.0115 (3) | 0.5372 (3) | 0.0989 (9) | |
H3B | 0.6979 | −0.0639 | 0.4794 | 0.119* | |
H3A | 0.6813 | −0.0420 | 0.5873 | 0.119* | |
C4 | 0.7043 (3) | 0.1376 (3) | 0.5183 (3) | 0.0889 (8) | |
H4B | 0.6572 | 0.1759 | 0.5630 | 0.107* | |
H4A | 0.6637 | 0.1521 | 0.4534 | 0.107* | |
C5 | 0.8254 (2) | 0.2041 (2) | 0.53147 (16) | 0.0638 (6) | |
H5A | 0.8418 | 0.2376 | 0.4694 | 0.077* | |
C6 | 0.84460 (18) | 0.3181 (2) | 0.60532 (14) | 0.0556 (5) | |
H6A | 0.8144 | 0.2913 | 0.6638 | 0.067* | |
C7 | 0.97364 (18) | 0.3545 (2) | 0.62885 (14) | 0.0575 (5) | |
H7A | 0.9995 | 0.3922 | 0.5712 | 0.069* | |
C8 | 1.05094 (19) | 0.2324 (3) | 0.66341 (15) | 0.0631 (5) | |
H8A | 1.1331 | 0.2614 | 0.6681 | 0.076* | |
C9 | 1.0288 (2) | 0.1237 (3) | 0.58517 (16) | 0.0683 (6) | |
H9B | 1.0561 | 0.1560 | 0.5275 | 0.082* | |
H9A | 1.0722 | 0.0417 | 0.6065 | 0.082* | |
C10 | 0.6967 (2) | 0.4880 (3) | 0.60542 (19) | 0.0747 (7) | |
C11 | 0.6557 (3) | 0.6217 (4) | 0.5632 (3) | 0.1127 (11) | |
H11C | 0.5929 | 0.6551 | 0.5942 | 0.169* | 0.50 |
H11B | 0.6281 | 0.6109 | 0.4957 | 0.169* | 0.50 |
H11A | 0.7197 | 0.6854 | 0.5724 | 0.169* | 0.50 |
H11F | 0.7009 | 0.6458 | 0.5140 | 0.169* | 0.50 |
H11E | 0.6657 | 0.6900 | 0.6125 | 0.169* | 0.50 |
H11D | 0.5741 | 0.6155 | 0.5359 | 0.169* | 0.50 |
C12 | 1.0680 (2) | 0.5503 (3) | 0.70642 (16) | 0.0670 (6) | |
C13 | 1.0580 (3) | 0.6588 (3) | 0.7779 (2) | 0.0993 (9) | |
H13C | 1.1180 | 0.7259 | 0.7753 | 0.149* | 0.50 |
H13B | 1.0673 | 0.6198 | 0.8411 | 0.149* | 0.50 |
H13A | 0.9821 | 0.7011 | 0.7635 | 0.149* | 0.50 |
H13F | 0.9935 | 0.6386 | 0.8113 | 0.149* | 0.50 |
H13E | 1.0443 | 0.7447 | 0.7455 | 0.149* | 0.50 |
H13D | 1.1295 | 0.6634 | 0.8231 | 0.149* | 0.50 |
C14 | 1.0331 (3) | 0.1806 (3) | 0.76184 (18) | 0.0828 (7) | |
H14B | 1.0357 | 0.2573 | 0.8055 | 0.099* | |
H14A | 0.9557 | 0.1399 | 0.7566 | 0.099* | |
C15 | 1.1237 (3) | 0.0773 (4) | 0.8039 (3) | 0.1224 (13) | |
H15C | 1.1077 | 0.0489 | 0.8657 | 0.184* | |
H15B | 1.2006 | 0.1174 | 0.8107 | 0.184* | |
H15A | 1.1204 | −0.0001 | 0.7620 | 0.184* | |
C16 | 0.5132 (2) | 0.5197 (3) | 0.86454 (19) | 0.0705 (6) | |
C17 | 0.4201 (2) | 0.5033 (3) | 0.7765 (2) | 0.0829 (7) | |
H17B | 0.3542 | 0.5636 | 0.7800 | 0.099* | |
H17A | 0.4523 | 0.5238 | 0.7186 | 0.099* | |
C18 | 0.3821 (3) | 0.3583 (3) | 0.7768 (3) | 0.1040 (10) | |
H18B | 0.3932 | 0.3143 | 0.7172 | 0.125* | |
H18A | 0.2996 | 0.3527 | 0.7830 | 0.125* | |
C19 | 0.4576 (2) | 0.2884 (3) | 0.86243 (18) | 0.0696 (6) | |
H19A | 0.4068 | 0.2543 | 0.9068 | 0.084* | |
C20 | 0.5353 (2) | 0.1748 (2) | 0.83702 (15) | 0.0602 (5) | |
H20A | 0.5746 | 0.2018 | 0.7831 | 0.072* | |
C21 | 0.6251 (2) | 0.1355 (2) | 0.92278 (15) | 0.0629 (6) | |
H21A | 0.5844 | 0.0979 | 0.9729 | 0.076* | |
C22 | 0.69956 (19) | 0.2565 (3) | 0.96345 (15) | 0.0639 (6) | |
H22A | 0.7486 | 0.2263 | 1.0229 | 0.077* | |
C23 | 0.6164 (2) | 0.3658 (3) | 0.99042 (16) | 0.0716 (6) | |
H23B | 0.5773 | 0.3333 | 1.0422 | 0.086* | |
H23A | 0.6606 | 0.4469 | 1.0124 | 0.086* | |
C24 | 0.4582 (3) | 0.0020 (3) | 0.7247 (2) | 0.0877 (8) | |
C25 | 0.3881 (4) | −0.1254 (4) | 0.7148 (3) | 0.1301 (14) | |
H25C | 0.3881 | −0.1631 | 0.6519 | 0.195* | 0.50 |
H25B | 0.3087 | −0.1058 | 0.7235 | 0.195* | 0.50 |
H25A | 0.4220 | −0.1898 | 0.7624 | 0.195* | 0.50 |
H25F | 0.3578 | −0.1427 | 0.7733 | 0.195* | 0.50 |
H25E | 0.4371 | −0.1999 | 0.7017 | 0.195* | 0.50 |
H25D | 0.3239 | −0.1160 | 0.6628 | 0.195* | 0.50 |
C26 | 0.7488 (2) | −0.0597 (3) | 0.9512 (3) | 0.0968 (9) | |
C27 | 0.8059 (3) | −0.1700 (4) | 0.9024 (4) | 0.1403 (16) | |
H27C | 0.8445 | −0.2322 | 0.9497 | 0.210* | 0.50 |
H27B | 0.8627 | −0.1310 | 0.8673 | 0.210* | 0.50 |
H27A | 0.7473 | −0.2178 | 0.8590 | 0.210* | 0.50 |
H27F | 0.7918 | −0.1551 | 0.8343 | 0.210* | 0.50 |
H27E | 0.7737 | −0.2564 | 0.9167 | 0.210* | 0.50 |
H27D | 0.8890 | −0.1695 | 0.9250 | 0.210* | 0.50 |
C28 | 0.7819 (2) | 0.3082 (3) | 0.89634 (17) | 0.0788 (7) | |
H28B | 0.8224 | 0.2311 | 0.8737 | 0.095* | |
H28A | 0.7351 | 0.3503 | 0.8408 | 0.095* | |
C29 | 0.8716 (3) | 0.4091 (5) | 0.9418 (3) | 0.1207 (13) | |
H29C | 0.9133 | 0.4456 | 0.8937 | 0.181* | |
H29B | 0.9260 | 0.3645 | 0.9906 | 0.181* | |
H29A | 0.8328 | 0.4815 | 0.9701 | 0.181* | |
N1 | 0.90503 (17) | 0.09344 (19) | 0.56432 (13) | 0.0636 (5) | |
N2 | 0.53009 (18) | 0.3980 (2) | 0.90770 (15) | 0.0708 (5) | |
O1 | 0.9073 (2) | −0.1337 (2) | 0.59263 (17) | 0.1011 (6) | |
O2 | 0.78379 (13) | 0.43758 (17) | 0.56408 (11) | 0.0666 (4) | |
O3 | 0.6567 (2) | 0.4302 (3) | 0.66728 (17) | 0.1181 (8) | |
O4 | 0.98020 (13) | 0.46046 (18) | 0.70120 (10) | 0.0679 (4) | |
O5 | 1.14461 (16) | 0.5425 (2) | 0.65819 (12) | 0.0856 (5) | |
O6 | 0.56358 (19) | 0.6243 (2) | 0.89226 (16) | 0.0923 (6) | |
O7 | 0.46121 (14) | 0.05762 (17) | 0.81120 (11) | 0.0695 (4) | |
O8 | 0.5052 (3) | 0.0493 (4) | 0.66446 (17) | 0.1501 (12) | |
O9 | 0.69467 (16) | 0.0294 (2) | 0.88760 (13) | 0.0826 (5) | |
O10 | 0.7497 (2) | −0.0500 (3) | 1.0360 (2) | 0.1259 (9) |
U11 | U22 | U33 | U12 | U13 | U23 | |
C2 | 0.0872 (17) | 0.0531 (15) | 0.0852 (15) | 0.0041 (14) | 0.0269 (13) | 0.0059 (12) |
C3 | 0.0889 (19) | 0.0666 (18) | 0.144 (3) | −0.0067 (16) | 0.0265 (18) | 0.0090 (17) |
C4 | 0.0780 (17) | 0.0680 (18) | 0.113 (2) | −0.0098 (15) | −0.0081 (14) | 0.0068 (16) |
C5 | 0.0670 (13) | 0.0564 (13) | 0.0662 (12) | −0.0004 (11) | 0.0044 (10) | 0.0068 (11) |
C6 | 0.0581 (12) | 0.0506 (11) | 0.0591 (11) | 0.0051 (10) | 0.0124 (9) | 0.0090 (10) |
C7 | 0.0615 (12) | 0.0580 (13) | 0.0554 (11) | −0.0024 (11) | 0.0163 (9) | −0.0059 (10) |
C8 | 0.0573 (12) | 0.0677 (14) | 0.0644 (12) | 0.0057 (12) | 0.0103 (9) | −0.0040 (11) |
C9 | 0.0692 (14) | 0.0652 (14) | 0.0716 (13) | 0.0101 (12) | 0.0145 (10) | −0.0050 (11) |
C10 | 0.0681 (14) | 0.0686 (16) | 0.0875 (16) | 0.0122 (13) | 0.0127 (13) | −0.0018 (13) |
C11 | 0.104 (2) | 0.073 (2) | 0.161 (3) | 0.0268 (19) | 0.022 (2) | 0.007 (2) |
C12 | 0.0729 (14) | 0.0590 (14) | 0.0651 (12) | −0.0023 (13) | −0.0017 (11) | 0.0075 (11) |
C13 | 0.115 (2) | 0.0734 (19) | 0.106 (2) | −0.0096 (17) | 0.0070 (17) | −0.0213 (16) |
C14 | 0.0967 (18) | 0.0839 (18) | 0.0657 (14) | 0.0198 (15) | 0.0066 (13) | 0.0070 (13) |
C15 | 0.118 (3) | 0.116 (3) | 0.124 (2) | 0.016 (2) | −0.0097 (19) | 0.041 (2) |
C16 | 0.0691 (14) | 0.0539 (15) | 0.0925 (16) | 0.0012 (12) | 0.0249 (12) | −0.0094 (13) |
C17 | 0.0702 (15) | 0.0698 (17) | 0.1057 (18) | 0.0084 (13) | 0.0048 (13) | 0.0078 (14) |
C18 | 0.101 (2) | 0.0642 (17) | 0.129 (2) | 0.0087 (16) | −0.0360 (18) | −0.0061 (17) |
C19 | 0.0644 (13) | 0.0557 (14) | 0.0862 (15) | −0.0003 (11) | 0.0039 (11) | −0.0064 (12) |
C20 | 0.0673 (13) | 0.0538 (13) | 0.0607 (11) | −0.0043 (11) | 0.0134 (10) | 0.0006 (10) |
C21 | 0.0661 (13) | 0.0633 (14) | 0.0612 (12) | 0.0090 (12) | 0.0156 (10) | 0.0058 (11) |
C22 | 0.0646 (12) | 0.0730 (16) | 0.0538 (11) | 0.0046 (12) | 0.0084 (9) | −0.0008 (11) |
C23 | 0.0730 (14) | 0.0779 (16) | 0.0642 (13) | −0.0014 (13) | 0.0121 (11) | −0.0122 (12) |
C24 | 0.105 (2) | 0.0780 (19) | 0.0827 (17) | −0.0088 (16) | 0.0217 (15) | −0.0191 (14) |
C25 | 0.171 (4) | 0.081 (2) | 0.136 (3) | −0.035 (2) | 0.017 (3) | −0.043 (2) |
C26 | 0.0648 (16) | 0.0689 (19) | 0.154 (3) | 0.0076 (15) | 0.0091 (18) | 0.018 (2) |
C27 | 0.090 (2) | 0.078 (2) | 0.250 (5) | 0.0224 (19) | 0.018 (3) | −0.022 (3) |
C28 | 0.0731 (15) | 0.0922 (19) | 0.0735 (14) | −0.0126 (15) | 0.0187 (11) | −0.0117 (14) |
C29 | 0.104 (2) | 0.137 (3) | 0.126 (2) | −0.038 (2) | 0.0343 (19) | −0.032 (3) |
N1 | 0.0686 (11) | 0.0508 (11) | 0.0703 (10) | 0.0038 (9) | 0.0073 (9) | 0.0014 (8) |
N2 | 0.0679 (12) | 0.0571 (12) | 0.0838 (13) | 0.0019 (10) | 0.0007 (10) | −0.0106 (10) |
O1 | 0.1129 (15) | 0.0586 (11) | 0.1369 (17) | 0.0145 (12) | 0.0351 (13) | 0.0165 (12) |
O2 | 0.0688 (9) | 0.0574 (9) | 0.0749 (9) | 0.0083 (8) | 0.0157 (7) | 0.0120 (8) |
O3 | 0.1130 (15) | 0.124 (2) | 0.1310 (17) | 0.0431 (15) | 0.0634 (14) | 0.0319 (16) |
O4 | 0.0733 (9) | 0.0625 (10) | 0.0704 (8) | −0.0020 (9) | 0.0185 (7) | −0.0114 (8) |
O5 | 0.0793 (10) | 0.0915 (13) | 0.0853 (10) | −0.0186 (10) | 0.0109 (9) | 0.0003 (10) |
O6 | 0.0981 (13) | 0.0630 (12) | 0.1168 (14) | −0.0122 (11) | 0.0203 (11) | −0.0161 (11) |
O7 | 0.0800 (10) | 0.0554 (9) | 0.0749 (9) | −0.0086 (8) | 0.0177 (7) | −0.0080 (8) |
O8 | 0.203 (3) | 0.169 (3) | 0.0902 (13) | −0.078 (3) | 0.0596 (16) | −0.0421 (18) |
O9 | 0.0816 (11) | 0.0694 (11) | 0.0993 (11) | 0.0176 (10) | 0.0223 (9) | −0.0020 (10) |
O10 | 0.1194 (18) | 0.112 (2) | 0.1410 (19) | 0.0225 (16) | 0.0056 (15) | 0.0507 (19) |
C2—O1 | 1.220 (3) | C16—O6 | 1.214 (3) |
C2—N1 | 1.338 (3) | C16—N2 | 1.342 (4) |
C2—C3 | 1.506 (4) | C16—C17 | 1.515 (4) |
C3—C4 | 1.500 (5) | C17—C18 | 1.490 (4) |
C3—H3B | 0.9700 | C17—H17B | 0.9700 |
C3—H3A | 0.9700 | C17—H17A | 0.9700 |
C4—C5 | 1.525 (4) | C18—C19 | 1.534 (4) |
C4—H4B | 0.9700 | C18—H18B | 0.9700 |
C4—H4A | 0.9700 | C18—H18A | 0.9700 |
C5—N1 | 1.451 (3) | C19—N2 | 1.448 (3) |
C5—C6 | 1.521 (3) | C19—C20 | 1.509 (3) |
C5—H5A | 0.9800 | C19—H19A | 0.9800 |
C6—O2 | 1.441 (3) | C20—O7 | 1.445 (3) |
C6—C7 | 1.514 (3) | C20—C21 | 1.512 (3) |
C6—H6A | 0.9800 | C20—H20A | 0.9800 |
C7—O4 | 1.450 (3) | C21—O9 | 1.449 (3) |
C7—C8 | 1.527 (3) | C21—C22 | 1.524 (3) |
C7—H7A | 0.9800 | C21—H21A | 0.9800 |
C8—C14 | 1.521 (4) | C22—C23 | 1.527 (3) |
C8—C9 | 1.528 (3) | C22—C28 | 1.527 (3) |
C8—H8A | 0.9800 | C22—H22A | 0.9800 |
C9—N1 | 1.441 (3) | C23—N2 | 1.443 (3) |
C9—H9B | 0.9700 | C23—H23B | 0.9700 |
C9—H9A | 0.9700 | C23—H23A | 0.9700 |
C10—O3 | 1.192 (3) | C24—O8 | 1.172 (4) |
C10—O2 | 1.332 (3) | C24—O7 | 1.331 (3) |
C10—C11 | 1.488 (4) | C24—C25 | 1.484 (5) |
C11—H11C | 0.9600 | C25—H25C | 0.9600 |
C11—H11B | 0.9600 | C25—H25B | 0.9600 |
C11—H11A | 0.9600 | C25—H25A | 0.9600 |
C11—H11F | 0.9600 | C25—H25F | 0.9600 |
C11—H11E | 0.9600 | C25—H25E | 0.9600 |
C11—H11D | 0.9600 | C25—H25D | 0.9600 |
C12—O5 | 1.197 (3) | C26—O10 | 1.198 (4) |
C12—O4 | 1.336 (3) | C26—O9 | 1.335 (4) |
C12—C13 | 1.483 (4) | C26—C27 | 1.490 (5) |
C13—H13C | 0.9600 | C27—H27C | 0.9600 |
C13—H13B | 0.9600 | C27—H27B | 0.9600 |
C13—H13A | 0.9600 | C27—H27A | 0.9600 |
C13—H13F | 0.9600 | C27—H27F | 0.9600 |
C13—H13E | 0.9600 | C27—H27E | 0.9600 |
C13—H13D | 0.9600 | C27—H27D | 0.9600 |
C14—C15 | 1.508 (5) | C28—C29 | 1.500 (5) |
C14—H14B | 0.9700 | C28—H28B | 0.9700 |
C14—H14A | 0.9700 | C28—H28A | 0.9700 |
C15—H15C | 0.9600 | C29—H29C | 0.9600 |
C15—H15B | 0.9600 | C29—H29B | 0.9600 |
C15—H15A | 0.9600 | C29—H29A | 0.9600 |
O1—C2—N1 | 124.7 (2) | C16—C17—H17B | 110.6 |
O1—C2—C3 | 127.3 (2) | C18—C17—H17A | 110.6 |
N1—C2—C3 | 108.0 (2) | C16—C17—H17A | 110.6 |
C4—C3—C2 | 106.1 (2) | H17B—C17—H17A | 108.7 |
C4—C3—H3B | 110.5 | C17—C18—C19 | 107.4 (2) |
C2—C3—H3B | 110.5 | C17—C18—H18B | 110.2 |
C4—C3—H3A | 110.5 | C19—C18—H18B | 110.2 |
C2—C3—H3A | 110.5 | C17—C18—H18A | 110.2 |
H3B—C3—H3A | 108.7 | C19—C18—H18A | 110.2 |
C3—C4—C5 | 106.7 (2) | H18B—C18—H18A | 108.5 |
C3—C4—H4B | 110.4 | N2—C19—C20 | 109.42 (18) |
C5—C4—H4B | 110.4 | N2—C19—C18 | 103.3 (2) |
C3—C4—H4A | 110.4 | C20—C19—C18 | 115.3 (2) |
C5—C4—H4A | 110.4 | N2—C19—H19A | 109.5 |
H4B—C4—H4A | 108.6 | C20—C19—H19A | 109.5 |
N1—C5—C6 | 108.47 (17) | C18—C19—H19A | 109.5 |
N1—C5—C4 | 103.7 (2) | O7—C20—C19 | 107.49 (17) |
C6—C5—C4 | 115.5 (2) | O7—C20—C21 | 107.50 (18) |
N1—C5—H5A | 109.6 | C19—C20—C21 | 110.83 (18) |
C6—C5—H5A | 109.6 | O7—C20—H20A | 110.3 |
C4—C5—H5A | 109.6 | C19—C20—H20A | 110.3 |
O2—C6—C7 | 107.10 (17) | C21—C20—H20A | 110.3 |
O2—C6—C5 | 108.32 (15) | O9—C21—C20 | 104.81 (18) |
C7—C6—C5 | 110.86 (17) | O9—C21—C22 | 112.40 (17) |
O2—C6—H6A | 110.2 | C20—C21—C22 | 112.06 (19) |
C7—C6—H6A | 110.2 | O9—C21—H21A | 109.1 |
C5—C6—H6A | 110.2 | C20—C21—H21A | 109.1 |
O4—C7—C6 | 105.33 (16) | C22—C21—H21A | 109.1 |
O4—C7—C8 | 112.09 (16) | C21—C22—C23 | 107.71 (18) |
C6—C7—C8 | 112.78 (18) | C21—C22—C28 | 113.21 (18) |
O4—C7—H7A | 108.8 | C23—C22—C28 | 113.2 (2) |
C6—C7—H7A | 108.8 | C21—C22—H22A | 107.5 |
C8—C7—H7A | 108.8 | C23—C22—H22A | 107.5 |
C14—C8—C7 | 113.47 (19) | C28—C22—H22A | 107.5 |
C14—C8—C9 | 113.1 (2) | N2—C23—C22 | 109.41 (18) |
C7—C8—C9 | 107.24 (16) | N2—C23—H23B | 109.8 |
C14—C8—H8A | 107.6 | C22—C23—H23B | 109.8 |
C7—C8—H8A | 107.6 | N2—C23—H23A | 109.8 |
C9—C8—H8A | 107.6 | C22—C23—H23A | 109.8 |
N1—C9—C8 | 109.81 (18) | H23B—C23—H23A | 108.2 |
N1—C9—H9B | 109.7 | O8—C24—O7 | 123.5 (3) |
C8—C9—H9B | 109.7 | O8—C24—C25 | 124.9 (3) |
N1—C9—H9A | 109.7 | O7—C24—C25 | 111.6 (3) |
C8—C9—H9A | 109.7 | C24—C25—H25C | 109.5 |
H9B—C9—H9A | 108.2 | C24—C25—H25B | 109.5 |
O3—C10—O2 | 123.1 (2) | H25C—C25—H25B | 109.5 |
O3—C10—C11 | 125.4 (3) | C24—C25—H25A | 109.5 |
O2—C10—C11 | 111.5 (3) | H25C—C25—H25A | 109.5 |
C10—C11—H11C | 109.5 | H25B—C25—H25A | 109.5 |
C10—C11—H11B | 109.5 | C24—C25—H25F | 109.5 |
H11C—C11—H11B | 109.5 | H25C—C25—H25F | 141.1 |
C10—C11—H11A | 109.5 | H25B—C25—H25F | 56.3 |
H11C—C11—H11A | 109.5 | H25A—C25—H25F | 56.3 |
H11B—C11—H11A | 109.5 | C24—C25—H25E | 109.5 |
C10—C11—H11F | 109.5 | H25C—C25—H25E | 56.3 |
H11C—C11—H11F | 141.1 | H25B—C25—H25E | 141.1 |
H11B—C11—H11F | 56.3 | H25A—C25—H25E | 56.3 |
H11A—C11—H11F | 56.3 | H25F—C25—H25E | 109.5 |
C10—C11—H11E | 109.5 | C24—C25—H25D | 109.5 |
H11C—C11—H11E | 56.3 | H25C—C25—H25D | 56.3 |
H11B—C11—H11E | 141.1 | H25B—C25—H25D | 56.3 |
H11A—C11—H11E | 56.3 | H25A—C25—H25D | 141.1 |
H11F—C11—H11E | 109.5 | H25F—C25—H25D | 109.5 |
C10—C11—H11D | 109.5 | H25E—C25—H25D | 109.5 |
H11C—C11—H11D | 56.3 | O10—C26—O9 | 123.2 (3) |
H11B—C11—H11D | 56.3 | O10—C26—C27 | 125.6 (4) |
H11A—C11—H11D | 141.1 | O9—C26—C27 | 111.1 (4) |
H11F—C11—H11D | 109.5 | C26—C27—H27C | 109.5 |
H11E—C11—H11D | 109.5 | C26—C27—H27B | 109.5 |
O5—C12—O4 | 123.0 (2) | H27C—C27—H27B | 109.5 |
O5—C12—C13 | 125.1 (3) | C26—C27—H27A | 109.5 |
O4—C12—C13 | 111.9 (2) | H27C—C27—H27A | 109.5 |
C12—C13—H13C | 109.5 | H27B—C27—H27A | 109.5 |
C12—C13—H13B | 109.5 | C26—C27—H27F | 109.5 |
H13C—C13—H13B | 109.5 | H27C—C27—H27F | 141.1 |
C12—C13—H13A | 109.5 | H27B—C27—H27F | 56.3 |
H13C—C13—H13A | 109.5 | H27A—C27—H27F | 56.3 |
H13B—C13—H13A | 109.5 | C26—C27—H27E | 109.5 |
C12—C13—H13F | 109.5 | H27C—C27—H27E | 56.3 |
H13C—C13—H13F | 141.1 | H27B—C27—H27E | 141.1 |
H13B—C13—H13F | 56.3 | H27A—C27—H27E | 56.3 |
H13A—C13—H13F | 56.3 | H27F—C27—H27E | 109.5 |
C12—C13—H13E | 109.5 | C26—C27—H27D | 109.5 |
H13C—C13—H13E | 56.3 | H27C—C27—H27D | 56.3 |
H13B—C13—H13E | 141.1 | H27B—C27—H27D | 56.3 |
H13A—C13—H13E | 56.3 | H27A—C27—H27D | 141.1 |
H13F—C13—H13E | 109.5 | H27F—C27—H27D | 109.5 |
C12—C13—H13D | 109.5 | H27E—C27—H27D | 109.5 |
H13C—C13—H13D | 56.3 | C29—C28—C22 | 114.1 (2) |
H13B—C13—H13D | 56.3 | C29—C28—H28B | 108.7 |
H13A—C13—H13D | 141.1 | C22—C28—H28B | 108.7 |
H13F—C13—H13D | 109.5 | C29—C28—H28A | 108.7 |
H13E—C13—H13D | 109.5 | C22—C28—H28A | 108.7 |
C15—C14—C8 | 113.6 (3) | H28B—C28—H28A | 107.6 |
C15—C14—H14B | 108.9 | C28—C29—H29C | 109.5 |
C8—C14—H14B | 108.9 | C28—C29—H29B | 109.5 |
C15—C14—H14A | 108.9 | H29C—C29—H29B | 109.5 |
C8—C14—H14A | 108.9 | C28—C29—H29A | 109.5 |
H14B—C14—H14A | 107.7 | H29C—C29—H29A | 109.5 |
C14—C15—H15C | 109.5 | H29B—C29—H29A | 109.5 |
C14—C15—H15B | 109.5 | C2—N1—C9 | 126.8 (2) |
H15C—C15—H15B | 109.5 | C2—N1—C5 | 115.3 (2) |
C14—C15—H15A | 109.5 | C9—N1—C5 | 117.79 (19) |
H15C—C15—H15A | 109.5 | C16—N2—C23 | 126.4 (2) |
H15B—C15—H15A | 109.5 | C16—N2—C19 | 115.5 (2) |
O6—C16—N2 | 125.5 (3) | C23—N2—C19 | 118.0 (2) |
O6—C16—C17 | 126.5 (3) | C10—O2—C6 | 118.56 (18) |
N2—C16—C17 | 108.0 (2) | C12—O4—C7 | 117.92 (17) |
C18—C17—C16 | 105.7 (2) | C24—O7—C20 | 119.2 (2) |
C18—C17—H17B | 110.6 | C26—O9—C21 | 117.9 (2) |
O1—C2—C3—C4 | 178.3 (3) | C28—C22—C23—N2 | 70.5 (3) |
N1—C2—C3—C4 | −2.4 (4) | C21—C22—C28—C29 | −169.1 (3) |
C2—C3—C4—C5 | 4.3 (4) | C23—C22—C28—C29 | 67.9 (3) |
C3—C4—C5—N1 | −4.5 (3) | O1—C2—N1—C9 | 1.4 (4) |
C3—C4—C5—C6 | −123.1 (3) | C3—C2—N1—C9 | −178.0 (2) |
N1—C5—C6—O2 | 168.45 (16) | O1—C2—N1—C5 | 178.7 (2) |
C4—C5—C6—O2 | −75.6 (2) | C3—C2—N1—C5 | −0.7 (3) |
N1—C5—C6—C7 | 51.2 (2) | C8—C9—N1—C2 | −123.6 (3) |
C4—C5—C6—C7 | 167.1 (2) | C8—C9—N1—C5 | 59.2 (3) |
O2—C6—C7—O4 | 63.58 (19) | C6—C5—N1—C2 | 126.7 (2) |
C5—C6—C7—O4 | −178.43 (16) | C4—C5—N1—C2 | 3.3 (3) |
O2—C6—C7—C8 | −173.87 (15) | C6—C5—N1—C9 | −55.8 (2) |
C5—C6—C7—C8 | −55.9 (2) | C4—C5—N1—C9 | −179.1 (2) |
O4—C7—C8—C14 | 49.6 (3) | O6—C16—N2—C23 | −4.8 (4) |
C6—C7—C8—C14 | −69.1 (3) | C17—C16—N2—C23 | 175.7 (2) |
O4—C7—C8—C9 | 175.27 (17) | O6—C16—N2—C19 | 178.6 (2) |
C6—C7—C8—C9 | 56.6 (2) | C17—C16—N2—C19 | −0.9 (3) |
C14—C8—C9—N1 | 70.6 (3) | C22—C23—N2—C16 | −119.1 (3) |
C7—C8—C9—N1 | −55.3 (2) | C22—C23—N2—C19 | 57.5 (3) |
C7—C8—C14—C15 | −169.6 (3) | C20—C19—N2—C16 | 122.6 (2) |
C9—C8—C14—C15 | 67.9 (3) | C18—C19—N2—C16 | −0.8 (3) |
O6—C16—C17—C18 | −177.2 (3) | C20—C19—N2—C23 | −54.4 (3) |
N2—C16—C17—C18 | 2.3 (3) | C18—C19—N2—C23 | −177.7 (2) |
C16—C17—C18—C19 | −2.7 (4) | O3—C10—O2—C6 | −9.7 (4) |
C17—C18—C19—N2 | 2.2 (3) | C11—C10—O2—C6 | 171.5 (2) |
C17—C18—C19—C20 | −117.2 (3) | C7—C6—O2—C10 | −122.9 (2) |
N2—C19—C20—O7 | 168.15 (17) | C5—C6—O2—C10 | 117.4 (2) |
C18—C19—C20—O7 | −75.9 (3) | O5—C12—O4—C7 | −4.5 (3) |
N2—C19—C20—C21 | 50.9 (3) | C13—C12—O4—C7 | 175.3 (2) |
C18—C19—C20—C21 | 166.8 (2) | C6—C7—O4—C12 | −152.11 (19) |
O7—C20—C21—O9 | 64.3 (2) | C8—C7—O4—C12 | 84.9 (2) |
C19—C20—C21—O9 | −178.50 (19) | O8—C24—O7—C20 | −6.5 (5) |
O7—C20—C21—C22 | −173.53 (16) | C25—C24—O7—C20 | 173.8 (3) |
C19—C20—C21—C22 | −56.3 (2) | C19—C20—O7—C24 | 122.2 (2) |
O9—C21—C22—C23 | 175.42 (17) | C21—C20—O7—C24 | −118.5 (2) |
C20—C21—C22—C23 | 57.7 (2) | O10—C26—O9—C21 | −5.7 (4) |
O9—C21—C22—C28 | 49.4 (3) | C27—C26—O9—C21 | 174.1 (2) |
C20—C21—C22—C28 | −68.3 (3) | C20—C21—O9—C26 | −154.8 (2) |
C21—C22—C23—N2 | −55.4 (3) | C22—C21—O9—C26 | 83.3 (3) |
Experimental details
Crystal data | |
Chemical formula | C14H21NO5 |
Mr | 283.32 |
Crystal system, space group | Monoclinic, P21 |
Temperature (K) | 298 |
a, b, c (Å) | 11.5157 (2), 9.8239 (1), 14.0922 (2) |
β (°) | 99.035 (2) |
V (Å3) | 1574.46 (4) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.09 |
Crystal size (mm) | 0.40 × 0.30 × 0.20 |
Data collection | |
Diffractometer | Oxford Diffraction Gemini R CCD diffractometer |
Absorption correction | Multi-scan (CrysAlis PRO; Oxford Diffraction, 2009) |
Tmin, Tmax | 0.952, 0.984 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 37222, 3404, 2508 |
Rint | 0.028 |
(sin θ/λ)max (Å−1) | 0.625 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.037, 0.104, 1.03 |
No. of reflections | 3404 |
No. of parameters | 361 |
No. of restraints | 1 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.11, −0.14 |
Computer programs: CrysAlis PRO (Oxford Diffraction, 2009), SHELXS97 (Sheldrick, 2008), DIAMOND (Brandenburg, 2001), SHELXL97 (Sheldrick, 2008), PLATON (Spek, 2009) and WinGX (Farrugia, 1999).
Acknowledgements
The authors thank the Grant Agency of the Slovak Republic, grant Nos. 1/0429/11 and 1/0679/11, and the Slovak Research and Development Agency under contract No. APVV-0204–10 for the financial support for this research program.
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Heterocycles are involved in a wide range of biologically important chemical reactions in living organisms, and therefore they form one of the most important and well investigated classes of organic compounds. One group of heterocycles, indolizines, has received much scientific attention during the recent years. Indolizine derivatives have been found to possess a variety of biological activities such as antibacterial, antiinflammatory, antiviral, (Nash et al., 1988; Molyneux & James, 1982; Medda et al., 2003), anti-HIV (Ruprecht et al., 1989), anti-cancer (Liu et al., 2007; Smith et al., 2007), and antitumor (Pearson & Guo, 2001). They have also shown to be calcium entry blockers (Gupta et al., 2003) and potent antioxidants inhibiting lipid peroxidation in vitro (Teklu et al., 2005). As such, indolizines are important synthetic targets in view of developing new pharmaceuticals for the treatment of cardiovascular diseases (Gubin et al., 1992). Based on these facts and in continuation of our interest in developing simple and efficient route for the synthesis of novel indolizine derivatives. We report here the synthesis, molecular and crystal structure of the title compound, (I), which crystallizes in the monoclinic space group P21 with two crystallographic independent molecules in asymmetric unit. The absolute configuration was established by synthesis. The expected stereochemistry of atoms C5, C6, C7 and C8 for molecule A and C19, C20, C21 and C22 for molecule B was confirmed for all as S, see Fig. 1. The central six-membered N-heterocyclic ring is not planar and adopts a chair conformation (Cremer & Pople, 1975). A calculation of least-squares planes shows that this ring is puckered in such a manner that the four atoms C5, C6, C8 and C9 (C19, C20, C22 and C23 for molecule B) are coplanar to within 0.018 (2)Å [0.019 (2)Å], while atoms N1 (N2) and C7 (C21) are displaced from this plane on opposite sides, with out-of-plane displacements of -0.593 (2)Å and 0.659 (2)Å [-0.581 (1)Å and 0.671 (2)Å for molecule B], respectively. In the molecule structure, the oxopyrrolidine ring N1/C2—C5 (N2/C16—C19) attached to the central six-membered ring is nearly planar (mean deviation is 0.018 (3)Å for molecule A and 0.010 (3)Å for molecule B). The dihedral angle between the plane of oxopyrrolidine ring and the plane of the four atoms C5, C6, C8 and C9 (C19, C20, C22 and C23) forming the base of the chair conformation is 51.0 (1)° (54.4 (1)°). The N1 (N2) atom is sp2 hybridized, as evidenced by the sum of the valence angles around it [359.9 (2)° for molecule A and 359.9 (2)° for molecule B]. These data are consistent with conjugative delocalization of the lone-pair electrons on N1 (N2) atom with the adjacent carbonyl C2=O1 (C16=O6) and agree with literature values for simple amides (Brown & Corbridge, 1954; Pedersen, 1967). The bond length of the carbonyl group C2=O1 (C16=O6) is 1.220 (3)Å [1.214 (3)Å], respectively, is somewhat longer than typical carbonyl bonds. This may be due to the fact that atoms O1 and O6 participate in intra- or intermolecular C—H···O contacts. The crystal structure is stabilized by weak intra- and intermolecular C—H···O hydrogen bonds.