organic compounds
(2E)-2-(4-Bromobenzylidene)-2,3-dihydro-1H-inden-1-one
aChemistry Department, Faculty of Science, King Abdulaziz University, PO Box 80203, Jeddah, Saudi Arabia, bThe Center of Excellence for Advanced Materials Research, King Abdulaziz University, Jeddah, PO Box 80203, Saudi Arabia, and cDepartment of Chemistry, University of Malaya, 50603 Kuala Lumpur, Malaysia
*Correspondence e-mail: edward.tiekink@gmail.com
The title indan-1-one derivative, C16H11BrO, is planar, the r.m.s. deviation for all 18 non-H atoms being 0.071 Å. The configuration about the C=C bond [1.337 (5) Å] is E. In the crystal, supramolecular layers in the ab plane are formed by C—H⋯O interactions, involving the bifurcated carbonyl O atom, as well as C—H⋯π interactions. The studied crystal was an inversion twin.
Related literature
For the activity of related species for the treatment of Chagas disease, see: Vera-DiVaio et al. (2009).
Experimental
Crystal data
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Data collection: CrysAlis PRO (Agilent, 2011); cell CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997) and DIAMOND (Brandenburg, 2006); software used to prepare material for publication: publCIF (Westrip, 2010).
Supporting information
10.1107/S1600536812006654/bt5818sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536812006654/bt5818Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536812006654/bt5818Isup3.cml
A solution of the 4-bromobenzaldehyde (1.8 g, 0.01 mol) in ethanol (20 ml) was added to a stirred solution of 1-indanone (1.3 g, 0.01 mol) in ethanolic KOH (20%, 20 ml), and stirring was maintained at room temperature for 6 h. The reaction mixture was then poured onto water (200 ml) and set aside overnight. The precipitated solid product was collected by filtration, washed with water, dried and recrystallized from its ethanol solution as blocks; M.pt: 453–455 K.
H-atoms were placed in calculated positions [C—H = 0.95 to 0.99 Å, Uiso(H) = 1.2Ueq(C)] and were included in the 6) and (3 0 5) reflections were omitted from the final cycles of refinement.
in the riding model approximation. The structure was refined as a racemic twin; the (Flack, 1983) was explicitly refined to 0.343 (10) indicating the fractional contribution of the minor twin component. Owing to poor agreement, the (3 1Data collection: CrysAlis PRO (Agilent, 2011); cell
CrysAlis PRO (Agilent, 2011); data reduction: CrysAlis PRO (Agilent, 2011); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997) and DIAMOND (Brandenburg, 2006); software used to prepare material for publication: publCIF (Westrip, 2010).C16H11BrO | F(000) = 300 |
Mr = 299.16 | Dx = 1.609 Mg m−3 |
Monoclinic, Pn | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P -2yac | Cell parameters from 2365 reflections |
a = 6.1359 (5) Å | θ = 2.9–27.5° |
b = 4.7512 (4) Å | µ = 3.31 mm−1 |
c = 21.310 (3) Å | T = 100 K |
β = 96.195 (9)° | Prism, orange |
V = 617.61 (11) Å3 | 0.20 × 0.10 × 0.05 mm |
Z = 2 |
Agilent SuperNova Dual diffractometer with an Atlas detector | 2705 independent reflections |
Radiation source: SuperNova (Mo) X-ray Source | 2455 reflections with I > 2σ(I) |
Mirror monochromator | Rint = 0.039 |
Detector resolution: 10.4041 pixels mm-1 | θmax = 27.6°, θmin = 3.4° |
ω scan | h = −7→7 |
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011) | k = −6→6 |
Tmin = 0.798, Tmax = 1.000 | l = −27→27 |
5083 measured reflections |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.036 | H-atom parameters constrained |
wR(F2) = 0.068 | w = 1/[σ2(Fo2) + (0.0265P)2] where P = (Fo2 + 2Fc2)/3 |
S = 0.99 | (Δ/σ)max < 0.001 |
2705 reflections | Δρmax = 0.70 e Å−3 |
164 parameters | Δρmin = −0.35 e Å−3 |
2 restraints | Absolute structure: Flack (1983), 1288 Friedel pairs |
Primary atom site location: structure-invariant direct methods | Absolute structure parameter: 0.343 (10) |
C16H11BrO | V = 617.61 (11) Å3 |
Mr = 299.16 | Z = 2 |
Monoclinic, Pn | Mo Kα radiation |
a = 6.1359 (5) Å | µ = 3.31 mm−1 |
b = 4.7512 (4) Å | T = 100 K |
c = 21.310 (3) Å | 0.20 × 0.10 × 0.05 mm |
β = 96.195 (9)° |
Agilent SuperNova Dual diffractometer with an Atlas detector | 2705 independent reflections |
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011) | 2455 reflections with I > 2σ(I) |
Tmin = 0.798, Tmax = 1.000 | Rint = 0.039 |
5083 measured reflections |
R[F2 > 2σ(F2)] = 0.036 | H-atom parameters constrained |
wR(F2) = 0.068 | Δρmax = 0.70 e Å−3 |
S = 0.99 | Δρmin = −0.35 e Å−3 |
2705 reflections | Absolute structure: Flack (1983), 1288 Friedel pairs |
164 parameters | Absolute structure parameter: 0.343 (10) |
2 restraints |
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Br1 | 0.50001 (3) | 0.38435 (6) | 0.489989 (19) | 0.02212 (10) | |
O1 | −0.1668 (4) | 1.6578 (5) | 0.71975 (12) | 0.0216 (6) | |
C1 | 0.3820 (7) | 1.3644 (7) | 0.74899 (19) | 0.0166 (9) | |
H1A | 0.4144 | 1.1744 | 0.7667 | 0.020* | |
H1B | 0.4993 | 1.4196 | 0.7230 | 0.020* | |
C2 | 0.3597 (7) | 1.5761 (7) | 0.80064 (19) | 0.0161 (9) | |
C3 | 0.5184 (7) | 1.6540 (7) | 0.84972 (18) | 0.0194 (8) | |
H3 | 0.6596 | 1.5695 | 0.8541 | 0.023* | |
C4 | 0.4630 (7) | 1.8602 (7) | 0.89226 (18) | 0.0235 (9) | |
H4 | 0.5677 | 1.9145 | 0.9262 | 0.028* | |
C5 | 0.2575 (7) | 1.9869 (8) | 0.88561 (19) | 0.0219 (9) | |
H5 | 0.2247 | 2.1283 | 0.9147 | 0.026* | |
C6 | 0.0998 (7) | 1.9098 (8) | 0.83714 (17) | 0.0198 (8) | |
H6 | −0.0412 | 1.9947 | 0.8328 | 0.024* | |
C7 | 0.1545 (6) | 1.7034 (7) | 0.79481 (17) | 0.0166 (8) | |
C8 | 0.0200 (7) | 1.5875 (8) | 0.73932 (19) | 0.0162 (9) | |
C9 | 0.1582 (6) | 1.3722 (7) | 0.71053 (19) | 0.0137 (8) | |
C10 | 0.0759 (6) | 1.2291 (7) | 0.65939 (17) | 0.0155 (8) | |
H10 | −0.0727 | 1.2694 | 0.6449 | 0.019* | |
C11 | 0.1822 (6) | 1.0181 (7) | 0.62235 (17) | 0.0147 (8) | |
C12 | 0.0596 (6) | 0.9077 (7) | 0.56840 (17) | 0.0184 (8) | |
H12 | −0.0877 | 0.9670 | 0.5581 | 0.022* | |
C13 | 0.1497 (6) | 0.7144 (8) | 0.53015 (17) | 0.0197 (9) | |
H13 | 0.0652 | 0.6404 | 0.4939 | 0.024* | |
C14 | 0.3645 (6) | 0.6305 (7) | 0.54539 (17) | 0.0168 (8) | |
C15 | 0.4890 (6) | 0.7281 (8) | 0.59864 (18) | 0.0184 (8) | |
H15 | 0.6355 | 0.6652 | 0.6088 | 0.022* | |
C16 | 0.3964 (6) | 0.9197 (7) | 0.63707 (17) | 0.0177 (8) | |
H16 | 0.4803 | 0.9856 | 0.6742 | 0.021* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Br1 | 0.02551 (18) | 0.02170 (16) | 0.01955 (16) | 0.0011 (2) | 0.00433 (13) | −0.0025 (2) |
O1 | 0.0155 (14) | 0.0269 (14) | 0.0218 (14) | 0.0010 (11) | −0.0003 (12) | −0.0013 (11) |
C1 | 0.020 (2) | 0.017 (2) | 0.0131 (19) | 0.0002 (16) | 0.0018 (18) | 0.0031 (15) |
C2 | 0.022 (2) | 0.0155 (18) | 0.0107 (19) | −0.0047 (16) | −0.0006 (18) | 0.0059 (16) |
C3 | 0.0197 (19) | 0.0189 (18) | 0.0184 (19) | −0.0011 (16) | −0.0036 (16) | 0.0032 (16) |
C4 | 0.032 (2) | 0.022 (2) | 0.0157 (19) | −0.0059 (17) | −0.0009 (17) | 0.0035 (16) |
C5 | 0.029 (2) | 0.0162 (19) | 0.021 (2) | −0.0011 (17) | 0.0057 (18) | 0.0020 (17) |
C6 | 0.022 (2) | 0.021 (2) | 0.018 (2) | −0.0028 (17) | 0.0079 (16) | 0.0013 (16) |
C7 | 0.020 (2) | 0.0139 (17) | 0.0160 (18) | −0.0033 (15) | 0.0024 (16) | 0.0027 (15) |
C8 | 0.018 (2) | 0.018 (2) | 0.0130 (19) | −0.0058 (17) | 0.0037 (18) | 0.0039 (16) |
C9 | 0.0134 (18) | 0.0120 (19) | 0.016 (2) | −0.0036 (14) | 0.0034 (17) | 0.0046 (15) |
C10 | 0.0146 (18) | 0.0200 (19) | 0.0122 (17) | −0.0016 (15) | 0.0025 (15) | 0.0032 (16) |
C11 | 0.019 (2) | 0.0118 (17) | 0.0138 (19) | −0.0043 (15) | 0.0035 (16) | 0.0034 (15) |
C12 | 0.0180 (19) | 0.0155 (18) | 0.0215 (19) | −0.0006 (15) | 0.0010 (16) | 0.0050 (16) |
C13 | 0.020 (2) | 0.0188 (19) | 0.0187 (19) | −0.0022 (15) | −0.0054 (17) | 0.0021 (15) |
C14 | 0.023 (2) | 0.0132 (17) | 0.0157 (18) | −0.0038 (15) | 0.0068 (16) | 0.0025 (14) |
C15 | 0.0158 (19) | 0.0207 (18) | 0.0187 (18) | 0.0008 (15) | 0.0022 (16) | 0.0051 (16) |
C16 | 0.020 (2) | 0.0183 (19) | 0.0149 (18) | −0.0040 (16) | 0.0012 (15) | 0.0013 (16) |
Br1—C14 | 1.914 (4) | C7—C8 | 1.474 (5) |
O1—C8 | 1.223 (5) | C8—C9 | 1.501 (5) |
C1—C2 | 1.508 (5) | C9—C10 | 1.337 (5) |
C1—C9 | 1.522 (5) | C10—C11 | 1.471 (5) |
C1—H1A | 0.9900 | C10—H10 | 0.9500 |
C1—H1B | 0.9900 | C11—C16 | 1.398 (5) |
C2—C7 | 1.390 (5) | C11—C12 | 1.406 (5) |
C2—C3 | 1.400 (5) | C12—C13 | 1.382 (5) |
C3—C4 | 1.401 (5) | C12—H12 | 0.9500 |
C3—H3 | 0.9500 | C13—C14 | 1.382 (5) |
C4—C5 | 1.391 (6) | C13—H13 | 0.9500 |
C4—H4 | 0.9500 | C14—C15 | 1.378 (5) |
C5—C6 | 1.386 (5) | C15—C16 | 1.387 (5) |
C5—H5 | 0.9500 | C15—H15 | 0.9500 |
C6—C7 | 1.398 (5) | C16—H16 | 0.9500 |
C6—H6 | 0.9500 | ||
C2—C1—C9 | 103.2 (3) | C7—C8—C9 | 106.9 (3) |
C2—C1—H1A | 111.1 | C10—C9—C8 | 119.9 (4) |
C9—C1—H1A | 111.1 | C10—C9—C1 | 131.8 (4) |
C2—C1—H1B | 111.1 | C8—C9—C1 | 108.3 (3) |
C9—C1—H1B | 111.1 | C9—C10—C11 | 129.3 (3) |
H1A—C1—H1B | 109.1 | C9—C10—H10 | 115.3 |
C7—C2—C3 | 120.1 (4) | C11—C10—H10 | 115.3 |
C7—C2—C1 | 112.2 (3) | C16—C11—C12 | 117.8 (3) |
C3—C2—C1 | 127.7 (4) | C16—C11—C10 | 124.6 (3) |
C2—C3—C4 | 118.1 (4) | C12—C11—C10 | 117.6 (3) |
C2—C3—H3 | 121.0 | C13—C12—C11 | 121.2 (4) |
C4—C3—H3 | 121.0 | C13—C12—H12 | 119.4 |
C5—C4—C3 | 121.2 (4) | C11—C12—H12 | 119.4 |
C5—C4—H4 | 119.4 | C14—C13—C12 | 119.0 (3) |
C3—C4—H4 | 119.4 | C14—C13—H13 | 120.5 |
C6—C5—C4 | 120.9 (4) | C12—C13—H13 | 120.5 |
C6—C5—H5 | 119.5 | C15—C14—C13 | 121.8 (3) |
C4—C5—H5 | 119.5 | C15—C14—Br1 | 118.3 (3) |
C5—C6—C7 | 118.0 (4) | C13—C14—Br1 | 119.9 (3) |
C5—C6—H6 | 121.0 | C14—C15—C16 | 118.8 (3) |
C7—C6—H6 | 121.0 | C14—C15—H15 | 120.6 |
C2—C7—C6 | 121.7 (3) | C16—C15—H15 | 120.6 |
C2—C7—C8 | 109.4 (3) | C15—C16—C11 | 121.5 (3) |
C6—C7—C8 | 128.8 (4) | C15—C16—H16 | 119.3 |
O1—C8—C7 | 126.5 (4) | C11—C16—H16 | 119.3 |
O1—C8—C9 | 126.6 (4) | ||
C9—C1—C2—C7 | −1.2 (4) | O1—C8—C9—C1 | 177.3 (4) |
C9—C1—C2—C3 | −179.9 (4) | C7—C8—C9—C1 | −1.2 (4) |
C7—C2—C3—C4 | 0.4 (5) | C2—C1—C9—C10 | −178.9 (4) |
C1—C2—C3—C4 | 179.0 (4) | C2—C1—C9—C8 | 1.5 (4) |
C2—C3—C4—C5 | −0.8 (5) | C8—C9—C10—C11 | 177.7 (4) |
C3—C4—C5—C6 | 1.0 (6) | C1—C9—C10—C11 | −1.9 (7) |
C4—C5—C6—C7 | −0.7 (6) | C9—C10—C11—C16 | 2.8 (6) |
C3—C2—C7—C6 | −0.2 (6) | C9—C10—C11—C12 | −177.2 (4) |
C1—C2—C7—C6 | −178.9 (3) | C16—C11—C12—C13 | −1.8 (5) |
C3—C2—C7—C8 | 179.3 (3) | C10—C11—C12—C13 | 178.2 (3) |
C1—C2—C7—C8 | 0.5 (5) | C11—C12—C13—C14 | −0.3 (5) |
C5—C6—C7—C2 | 0.3 (5) | C12—C13—C14—C15 | 1.9 (5) |
C5—C6—C7—C8 | −179.0 (4) | C12—C13—C14—Br1 | −175.5 (3) |
C2—C7—C8—O1 | −178.1 (4) | C13—C14—C15—C16 | −1.3 (5) |
C6—C7—C8—O1 | 1.3 (7) | Br1—C14—C15—C16 | 176.2 (3) |
C2—C7—C8—C9 | 0.4 (4) | C14—C15—C16—C11 | −1.0 (5) |
C6—C7—C8—C9 | 179.9 (4) | C12—C11—C16—C15 | 2.5 (5) |
O1—C8—C9—C10 | −2.3 (6) | C10—C11—C16—C15 | −177.5 (3) |
C7—C8—C9—C10 | 179.1 (3) |
Cg1 is the centroid of the C2–C7 ring. |
D—H···A | D—H | H···A | D···A | D—H···A |
C1—H1b···O1i | 0.99 | 2.35 | 3.220 (5) | 146 |
C15—H15···O1ii | 0.95 | 2.54 | 3.171 (5) | 124 |
C1—H1A···Cg1iii | 0.99 | 2.61 | 3.479 (4) | 147 |
Symmetry codes: (i) x+1, y, z; (ii) x+1, y−1, z; (iii) x, y+1, z. |
Experimental details
Crystal data | |
Chemical formula | C16H11BrO |
Mr | 299.16 |
Crystal system, space group | Monoclinic, Pn |
Temperature (K) | 100 |
a, b, c (Å) | 6.1359 (5), 4.7512 (4), 21.310 (3) |
β (°) | 96.195 (9) |
V (Å3) | 617.61 (11) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 3.31 |
Crystal size (mm) | 0.20 × 0.10 × 0.05 |
Data collection | |
Diffractometer | Agilent SuperNova Dual diffractometer with an Atlas detector |
Absorption correction | Multi-scan (CrysAlis PRO; Agilent, 2011) |
Tmin, Tmax | 0.798, 1.000 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 5083, 2705, 2455 |
Rint | 0.039 |
(sin θ/λ)max (Å−1) | 0.651 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.036, 0.068, 0.99 |
No. of reflections | 2705 |
No. of parameters | 164 |
No. of restraints | 2 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.70, −0.35 |
Absolute structure | Flack (1983), 1288 Friedel pairs |
Absolute structure parameter | 0.343 (10) |
Computer programs: CrysAlis PRO (Agilent, 2011), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 (Farrugia, 1997) and DIAMOND (Brandenburg, 2006), publCIF (Westrip, 2010).
Cg1 is the centroid of the C2–C7 ring. |
D—H···A | D—H | H···A | D···A | D—H···A |
C1—H1b···O1i | 0.99 | 2.35 | 3.220 (5) | 146 |
C15—H15···O1ii | 0.95 | 2.54 | 3.171 (5) | 124 |
C1—H1A···Cg1iii | 0.99 | 2.61 | 3.479 (4) | 147 |
Symmetry codes: (i) x+1, y, z; (ii) x+1, y−1, z; (iii) x, y+1, z. |
Footnotes
‡Additional correspondence author, e-mail: aasiri2@kau.edu.sa.
Acknowledgements
The authors are thankful to the Center of Excellence for Advanced Materials Research and the Chemistry Department of King Abdulaziz University for providing research facilities. We also thank the Ministry of Higher Education (Malaysia) for funding structural studies through the High-Impact Research scheme (UM.C/HIR/MOHE/SC/12).
References
Agilent (2011). CrysAlis PRO. Agilent Technologies, Yarnton, Oxfordshire, England. Google Scholar
Brandenburg, K. (2006). DIAMOND. Crystal Impact GbR, Bonn, Germany. Google Scholar
Farrugia, L. J. (1997). J. Appl. Cryst. 30, 565. CrossRef IUCr Journals Google Scholar
Flack, H. D. (1983). Acta Cryst. A39, 876–881. CrossRef CAS Web of Science IUCr Journals Google Scholar
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Vera-DiVaio, M. A. F., Freitas, A. C. C., Castro, F. H. C., de Albuquerque, S., Cabral, L. M., Rodrigues, C. R., Albuquerque, M. G., Martins, R. C. A., Henriques, M. G. M. O. & Dias, L. R. S. (2009). Bioorg. Med. Chem. 17, 295–302. Web of Science PubMed CAS Google Scholar
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
The motivation for the investigation of the title compound, 2-(4-bromobenzylidene)indan-1-one (I), is its relationship to some active compounds developed for the treatment of Chagas disease (Vera-DiVaio et al., 2009).
The molecule of (I), Fig. 1, is planar with a r.m.s. deviation for all 18 non-hydrogen atoms = 0.071 Å. The maximum deviations are found for the Br1 [-0.195 (1) Å] and C16 [-0.096 (3) Å] atoms. The configuration about the C9═C10 bond [1.337 (5) Å] is E.
In the crystal packing, C—H···O interactions involving the bifurcated carbonyl-O atom as well as C—H···π interactions link molecules into layers in the ab plane, Fig. 2 and Table 1. The layers stack along the c axis with no specific interactions between them, Fig. 2.