metal-organic compounds\(\def\hfill{\hskip 5em}\def\hfil{\hskip 3em}\def\eqno#1{\hfil {#1}}\)

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ISSN: 2056-9890

Poly[[tetra­aqua­di-μ4-oxalato-μ2-oxalato-dineo­dymium(III)] dihydrate]

aCollege of Life Science, Fujian Agriculture and Forestry University, Fuzhou, Fujian 350002, People's Republic of China, and bKey Laboratory of Biopesticide and Chemical Biology, Ministry of Education, Fujian Agriculture and Forestry University, Fuzhou, Fujian 350002, People's Republic of China
*Correspondence e-mail: 59514683@qq.com

(Received 24 November 2011; accepted 5 February 2012; online 17 February 2012)

The title compound, {[Nd2(C2O4)3(H2O)4]·2H2O}n, was synthesized hydro­thermally in the presence of bis­(carb­oxy­ethyl­germanium) sesquioxide. It is isostructural with the corresponding Pr compound [Yang et al. (2009). Acta Cryst. E65, m1152–m1153]. The Nd3+ cation is nine-coordinated and its coordination polyhedron can be described as a distorted tricapped trigonal prism. Two Nd3+ ions are connected by two O atoms from two oxalate ions to give a dinuclear Nd2 unit. The unit is further linked to four others via four oxalate ions yielding a layerparallel to (0-11). The linkages between the layers by neighbouring oxalate anions lead to a three-dimensional framework with channels along the c axis. The coordinating and free water mol­ecules are located in the channels and make contact with each other and the host framework by weak O—H⋯O hydrogen bonds.

Related literature

For the application of lanthanide compounds, see: Kido & Okamoto (2002[Kido, J. & Okamoto, Y. (2002). Chem. Rev. 102, 2357-2368.]). For background to lanthanide oxalates, see: Kahwa et al. (1984[Kahwa, I. A., Fronczek, F. R. & Selbin, J. (1984). Inorg. Chim. Acta, 82, 161-166.]); Trombe & Jaud (2003[Trombe, J. C. & Jaud, J. (2003). J. Chem. Crystallogr. 33, 19-26.]); Wang et al. (2008[Wang, C.-M., Wu, Y.-Y., Chang, Y.-W. & Lii, K.-H. (2008). Chem. Mater. 20, 2857-2859.]). For the isostructural Pr compound, see: Yang et al. (2009[Yang, T.-H., Chen, Q., Zhuang, W., Wang, Z. & Yue, B.-Y. (2009). Acta Cryst. E65, m1152-m1153.]).

[Scheme 1]

Experimental

Crystal data
  • [Nd2(C2O4)3(H2O)4]·2H2O

  • Mr = 660.64

  • Triclinic, [P \overline 1]

  • a = 6.036 (3) Å

  • b = 7.603 (3) Å

  • c = 8.906 (4) Å

  • α = 98.386 (6)°

  • β = 99.742 (3)°

  • γ = 96.802 (5)°

  • V = 394.2 (3) Å3

  • Z = 1

  • Mo Kα radiation

  • μ = 6.61 mm−1

  • T = 293 K

  • 0.05 × 0.05 × 0.05 mm

Data collection
  • Rigaku SCXmini diffractometer

  • Absorption correction: multi-scan (SADABS; Sheldrick, 2004[Sheldrick, G. M. (2004). SADABS. University of Göttingen, Germany.]) Tmin = 0.758, Tmax = 1.000

  • 2997 measured reflections

  • 1721 independent reflections

  • 1600 reflections with I > 2σ(I)

  • Rint = 0.019

Refinement
  • R[F2 > 2σ(F2)] = 0.019

  • wR(F2) = 0.045

  • S = 1.04

  • 1721 reflections

  • 137 parameters

  • 9 restraints

  • All H-atom parameters refined

  • Δρmax = 1.01 e Å−3

  • Δρmin = −1.06 e Å−3

Table 1
Hydrogen-bond geometry (Å, °)

D—H⋯A D—H H⋯A DA D—H⋯A
O1W—H1⋯O5i 0.84 (2) 2.00 (3) 2.681 (4) 138 (4)
O1W—H1⋯O3i 0.84 (2) 2.55 (3) 3.244 (4) 141 (4)
O1W—H2⋯O3W 0.82 (2) 2.01 (2) 2.833 (4) 175 (5)
O2W—H3⋯O3ii 0.83 (2) 2.20 (3) 2.919 (4) 145 (4)
O2W—H4⋯O3Wii 0.83 (2) 2.00 (2) 2.809 (4) 165 (4)
O3W—H5⋯O4iii 0.82 (2) 2.04 (2) 2.827 (4) 159 (5)
O3W—H6⋯O6iv 0.85 (2) 2.10 (4) 2.835 (4) 146 (5)
Symmetry codes: (i) x-1, y, z; (ii) -x+1, -y+2, -z+1; (iii) -x+1, -y+1, -z+1; (iv) -x, -y+1, -z+1.

Data collection: CrystalClear (Rigaku, 2007[Rigaku (2007). CrystalClear. Rigaku Corporation, Tokyo, Japan.]); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008[Sheldrick, G. M. (2008). Acta Cryst. A64, 112-122.]); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008[Sheldrick, G. M. (2008). Acta Cryst. A64, 112-122.]); molecular graphics: SHELXTL (Sheldrick, 2008[Sheldrick, G. M. (2008). Acta Cryst. A64, 112-122.]); software used to prepare material for publication: SHELXTL.

Supporting information


Comment top

The current interest in designing and making lanthanide compounds has been excitated not only by their impressive structural but also by their application in optoelectronic field (Kido & Okamoto, 2002). In our work on the preparation of lanthanide-organogermanate compounds, an unexpected lanthanide oxalate {[Nd(C2O4)1.5(H2O)2].H2O}n, was obtained. Although the synthesis methods are different, it is isostructural with the corresponding Pr compound (Yang et al., 2009).

Crystal structure determination by X-ray diffraction was performed on a SCXmini-CCD diffractometer equipped with a graphite-monochromatic MoKα (λ = 0.71073 Å) radiation using an ω scan mode at 273 K. The crystallographic analysis reveals that the asymmetric unit of this compound contains one independent Nd atom, six O atoms, three C atoms and three water molecules. The Nd3+ cation is nine-coordinated and is described as distorted tricapped trigonal prism: six O atoms from three C2O42- ligands, one O atom from one C2O42- and two water molecules. Two Nd3+ ions are connected by two O atoms from two oxalates to give a dinuclear Nd2 unit. The unit is further connected four others via four oxalates to form a layer. The linkages between the layers by oxalates lead to a three-dimensional framework with channels along a axis, as shown in Fig.2. The coordinated and free water molecules is located in the channels and contact with each other and host framework by O—H···O hydrogne bonds (Fig.3.).

Related literature top

For the application of lanthanide compounds, see: Kido & Okamoto (2002). For background to lanthanide oxalates, see: Kahwa et al. (1984); Trombe & Jaud (2003); Wang et al. (2008). For the isostructural Pr compound, see: Yang et al. (2009).

Experimental top

A mixture of H2E2Ge2O3 (bis(carboxyethylgermanium) sesquioxide) (0.085 g), Nd2O3 (0.090 g), H2C2O4 (0.090 g) and H2O (10 ml) was stirred for about 30 min, then sealed in a 25 ml Teflonlined bomb at 170°C for 7 days, cooled to room temperature. Pink prismatic crystals of the title compound were obtained by filtration (yield about 55% based on H2C2O4), washed with distilled water, and dried in air. The H2E2Ge2O3 ligand plays a key role in the formation of the title compound although it is not present in the final product. If H2E2Ge2O3 ligand was not added, we obtained a different neodymium oxalate reported reviously (Trombe & Jaud, 2003). Elemental analysis calcd (%) for C6H12Nd2O18: C, 10.91; H, 1.83; Found: C, 10.87; H, 1.88.

Refinement top

All non-hydrogen atoms were refined anisotropically. The water H atoms were located in a difference Fourier map and refined with a distance restraint of O—H = 0.85 Å, and H–H=1.32Å within the water molecules and with Uiso(H) = 1.5Ueq(O).

Computing details top

Data collection: CrystalClear (Rigaku, 2007); cell refinement: CrystalClear (Rigaku, 2007); data reduction: CrystalClear (Rigaku, 2007); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).

Figures top
[Figure 1] Fig. 1. The asymmetric unit of the title complex, together with additional O2 atom to complete the coordination of the Nd3+ cation. Symmetry operation (i) 1–x, 2 - y, 2–z. Displacement ellipsoids are plotted at the 50% probability level. H atoms are shown as small circles of arbitrary radii.
[Figure 2] Fig. 2. The three-dimensional framework of the title complex with channels viewed along the a axis.
[Figure 3] Fig. 3. Hydrogen bonds with dashed lines in the title compound viewed along the a axis.
Poly[[tetraaquadi-µ4-oxalato-µ2-oxalato-dineodymium(III)] dihydrate] top
Crystal data top
[Nd2(C2O4)3(H2O)4]·2H2OZ = 1
Mr = 660.64F(000) = 312
Triclinic, P1Dx = 2.783 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 6.036 (3) ÅCell parameters from 1101 reflections
b = 7.603 (3) Åθ = 2.4–27.5°
c = 8.906 (4) ŵ = 6.61 mm1
α = 98.386 (6)°T = 293 K
β = 99.742 (3)°Prism, pink
γ = 96.802 (5)°0.05 × 0.05 × 0.05 mm
V = 394.2 (3) Å3
Data collection top
Rigaku SCXmini
diffractometer
1721 independent reflections
Radiation source: fine-focus sealed tube1600 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.019
ω scansθmax = 27.5°, θmin = 3.3°
Absorption correction: multi-scan
(SADABS; Sheldrick, 2004)
h = 77
Tmin = 0.758, Tmax = 1.000k = 99
2997 measured reflectionsl = 1111
Refinement top
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.019All H-atom parameters refined
wR(F2) = 0.045 w = 1/[σ2(Fo2) + (0.0267P)2]
where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max = 0.001
1721 reflectionsΔρmax = 1.01 e Å3
137 parametersΔρmin = 1.06 e Å3
9 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0250 (12)
Crystal data top
[Nd2(C2O4)3(H2O)4]·2H2Oγ = 96.802 (5)°
Mr = 660.64V = 394.2 (3) Å3
Triclinic, P1Z = 1
a = 6.036 (3) ÅMo Kα radiation
b = 7.603 (3) ŵ = 6.61 mm1
c = 8.906 (4) ÅT = 293 K
α = 98.386 (6)°0.05 × 0.05 × 0.05 mm
β = 99.742 (3)°
Data collection top
Rigaku SCXmini
diffractometer
1721 independent reflections
Absorption correction: multi-scan
(SADABS; Sheldrick, 2004)
1600 reflections with I > 2σ(I)
Tmin = 0.758, Tmax = 1.000Rint = 0.019
2997 measured reflections
Refinement top
R[F2 > 2σ(F2)] = 0.0199 restraints
wR(F2) = 0.045All H-atom parameters refined
S = 1.04Δρmax = 1.01 e Å3
1721 reflectionsΔρmin = 1.06 e Å3
137 parameters
Special details top

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.

Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
Nd0.50918 (3)0.80732 (2)0.795455 (19)0.01243 (9)
O10.3007 (4)0.6414 (3)0.9553 (3)0.0197 (5)
O20.2687 (4)1.0032 (3)0.9482 (3)0.0159 (5)
O30.6296 (4)0.7244 (3)0.5432 (3)0.0194 (5)
O40.7188 (4)0.5888 (3)0.9155 (3)0.0218 (5)
O50.9212 (4)0.8988 (3)0.8085 (3)0.0210 (5)
O60.3574 (5)0.4917 (3)0.6531 (3)0.0227 (5)
C10.3797 (6)0.5159 (4)1.0114 (4)0.0160 (7)
C20.0540 (5)0.9720 (4)0.9295 (4)0.0138 (6)
C30.5789 (6)0.5661 (4)0.4686 (4)0.0163 (7)
O1W0.1774 (4)0.8272 (4)0.5951 (3)0.0303 (7)
H10.052 (5)0.846 (6)0.618 (5)0.045*
H20.145 (7)0.765 (6)0.509 (3)0.045*
O2W0.5617 (5)1.0983 (4)0.7077 (3)0.0283 (6)
H30.461 (5)1.144 (6)0.658 (5)0.042*
H40.680 (4)1.171 (5)0.722 (6)0.042*
O3W0.0780 (5)0.6307 (4)0.2901 (4)0.0390 (8)
H50.105 (8)0.550 (6)0.226 (5)0.059*
H60.065 (3)0.620 (7)0.277 (6)0.059*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
Nd0.01250 (11)0.01253 (11)0.01129 (11)0.00015 (6)0.00267 (6)0.00003 (6)
O10.0213 (13)0.0226 (13)0.0199 (12)0.0078 (10)0.0081 (10)0.0099 (10)
O20.0100 (11)0.0192 (12)0.0172 (11)0.0004 (9)0.0032 (9)0.0006 (9)
O30.0231 (13)0.0158 (12)0.0170 (12)0.0022 (10)0.0058 (10)0.0027 (10)
O40.0176 (13)0.0249 (13)0.0272 (13)0.0047 (10)0.0086 (10)0.0123 (11)
O50.0137 (11)0.0311 (14)0.0140 (11)0.0038 (10)0.0023 (9)0.0034 (10)
O60.0303 (14)0.0191 (12)0.0172 (12)0.0045 (10)0.0128 (10)0.0047 (10)
C10.0177 (17)0.0169 (16)0.0125 (15)0.0023 (13)0.0028 (13)0.0001 (13)
C20.0131 (15)0.0123 (14)0.0153 (16)0.0008 (12)0.0025 (12)0.0014 (13)
C30.0155 (16)0.0179 (17)0.0135 (15)0.0021 (13)0.0000 (12)0.0000 (13)
O1W0.0161 (13)0.0518 (19)0.0197 (13)0.0077 (12)0.0025 (10)0.0053 (13)
O2W0.0261 (15)0.0227 (14)0.0342 (16)0.0029 (11)0.0005 (12)0.0112 (12)
O3W0.0284 (16)0.0440 (18)0.0356 (17)0.0137 (14)0.0118 (13)0.0141 (14)
Geometric parameters (Å, º) top
Nd—O12.441 (3)O5—C2iii1.241 (4)
Nd—O2W2.455 (3)O6—C3iv1.248 (4)
Nd—O42.462 (3)C1—O4ii1.258 (5)
Nd—O52.480 (3)C1—C1ii1.542 (7)
Nd—O1W2.481 (3)C2—O5v1.241 (4)
Nd—O32.494 (3)C2—C2vi1.539 (6)
Nd—O62.530 (3)C3—O6iv1.248 (4)
Nd—O2i2.576 (2)C3—C3iv1.532 (7)
Nd—O22.601 (2)O1W—H10.839 (19)
O1—C11.246 (4)O1W—H20.823 (19)
O2—C21.267 (4)O2W—H30.830 (18)
O2—Ndi2.576 (2)O2W—H40.827 (19)
O3—C31.263 (4)O3W—H50.824 (19)
O4—C1ii1.258 (5)O3W—H60.845 (19)
O1—Nd—O2W142.79 (9)O4—Nd—O2120.99 (8)
O1—Nd—O466.13 (8)O5—Nd—O2122.26 (8)
O2W—Nd—O4142.62 (9)O1W—Nd—O276.88 (8)
O1—Nd—O5132.18 (8)O3—Nd—O2146.24 (8)
O2W—Nd—O571.58 (9)O6—Nd—O2122.82 (8)
O4—Nd—O571.43 (9)O2i—Nd—O265.42 (9)
O1—Nd—O1W97.08 (10)C1—O1—Nd120.1 (2)
O2W—Nd—O1W70.46 (10)C2—O2—Ndi118.3 (2)
O4—Nd—O1W142.10 (10)C2—O2—Nd123.74 (19)
O5—Nd—O1W130.44 (10)Ndi—O2—Nd114.58 (8)
O1—Nd—O3134.13 (8)C3—O3—Nd121.0 (2)
O2W—Nd—O377.81 (9)C1ii—O4—Nd119.4 (2)
O4—Nd—O392.73 (9)C2iii—O5—Nd123.2 (2)
O5—Nd—O367.13 (8)C3iv—O6—Nd120.3 (2)
O1W—Nd—O374.66 (9)O1—C1—O4ii126.2 (3)
O1—Nd—O670.15 (8)O1—C1—C1ii117.3 (4)
O2W—Nd—O6132.48 (9)O4ii—C1—C1ii116.5 (4)
O4—Nd—O669.77 (9)O5v—C2—O2126.3 (3)
O5—Nd—O6114.40 (8)O5v—C2—C2vi116.4 (4)
O1W—Nd—O672.59 (10)O2—C2—C2vi117.2 (3)
O3—Nd—O664.28 (8)O6iv—C3—O3125.9 (3)
O1—Nd—O2i85.95 (9)O6iv—C3—C3iv117.0 (4)
O2W—Nd—O2i81.77 (9)O3—C3—C3iv117.1 (4)
O4—Nd—O2i77.35 (8)Nd—O1W—H1122 (3)
O5—Nd—O2i63.77 (7)Nd—O1W—H2124 (3)
O1W—Nd—O2i137.60 (8)H1—O1W—H2105 (3)
O3—Nd—O2i130.55 (8)Nd—O2W—H3126 (3)
O6—Nd—O2i144.97 (8)Nd—O2W—H4128 (3)
O1—Nd—O267.11 (8)H3—O2W—H4106 (3)
O2W—Nd—O275.84 (10)H5—O3W—H6105 (3)
Symmetry codes: (i) x+1, y+2, z+2; (ii) x+1, y+1, z+2; (iii) x+1, y, z; (iv) x+1, y+1, z+1; (v) x1, y, z; (vi) x, y+2, z+2.
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
O1W—H1···O5v0.84 (2)2.00 (3)2.681 (4)138 (4)
O1W—H1···O3v0.84 (2)2.55 (3)3.244 (4)141 (4)
O1W—H2···O3W0.82 (2)2.01 (2)2.833 (4)175 (5)
O2W—H3···O3vii0.83 (2)2.20 (3)2.919 (4)145 (4)
O2W—H4···O3Wvii0.83 (2)2.00 (2)2.809 (4)165 (4)
O3W—H5···O4iv0.82 (2)2.04 (2)2.827 (4)159 (5)
O3W—H6···O6viii0.85 (2)2.10 (4)2.835 (4)146 (5)
Symmetry codes: (iv) x+1, y+1, z+1; (v) x1, y, z; (vii) x+1, y+2, z+1; (viii) x, y+1, z+1.

Experimental details

Crystal data
Chemical formula[Nd2(C2O4)3(H2O)4]·2H2O
Mr660.64
Crystal system, space groupTriclinic, P1
Temperature (K)293
a, b, c (Å)6.036 (3), 7.603 (3), 8.906 (4)
α, β, γ (°)98.386 (6), 99.742 (3), 96.802 (5)
V3)394.2 (3)
Z1
Radiation typeMo Kα
µ (mm1)6.61
Crystal size (mm)0.05 × 0.05 × 0.05
Data collection
DiffractometerRigaku SCXmini
diffractometer
Absorption correctionMulti-scan
(SADABS; Sheldrick, 2004)
Tmin, Tmax0.758, 1.000
No. of measured, independent and
observed [I > 2σ(I)] reflections
2997, 1721, 1600
Rint0.019
(sin θ/λ)max1)0.649
Refinement
R[F2 > 2σ(F2)], wR(F2), S 0.019, 0.045, 1.04
No. of reflections1721
No. of parameters137
No. of restraints9
H-atom treatmentAll H-atom parameters refined
Δρmax, Δρmin (e Å3)1.01, 1.06

Computer programs: CrystalClear (Rigaku, 2007), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).

Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
O1W—H1···O5i0.839 (19)2.00 (3)2.681 (4)138 (4)
O1W—H1···O3i0.839 (19)2.55 (3)3.244 (4)141 (4)
O1W—H2···O3W0.823 (19)2.012 (19)2.833 (4)175 (5)
O2W—H3···O3ii0.830 (18)2.20 (3)2.919 (4)145 (4)
O2W—H4···O3Wii0.827 (19)2.00 (2)2.809 (4)165 (4)
O3W—H5···O4iii0.824 (19)2.04 (2)2.827 (4)159 (5)
O3W—H6···O6iv0.845 (19)2.10 (4)2.835 (4)146 (5)
Symmetry codes: (i) x1, y, z; (ii) x+1, y+2, z+1; (iii) x+1, y+1, z+1; (iv) x, y+1, z+1.
 

Acknowledgements

This work was supported financially by the Natural Science Fund for Young Scholars of Fujian Province (grant No. 2011 J05018) and the Fund for Young Scholars from Fujian Agriculture and Forestry University (grant No. 2011xjj06).

References

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