organic compounds
(2E)-2-(5-Bromo-2-hydroxy-3-methoxybenzylidene)-N-cyclohexylhydrazinecarbothioamide
aDepartment of Applied Chemistry, Cochin University of Science and Technology, Kochi 682 022, India
*Correspondence e-mail: mrp@cusat.ac.in
The title compound, C15H20BrN3O2S, crystallizes in the thioamide form and adopts an E,E conformation with respect to the azomethine and hydrazinic bonds, respectively. The molecules are paired through N—H⋯O and O—H⋯S hydrogen bonds, leading to the formation of centrosymmetric dimers in the crystal. These dimers are stacked along the a axis and are interconnected through N—H⋯S hydrogen bonds to generate polymeric chains. The structure also features C—H⋯π interactions. An intramolecular O—H⋯O bond is also present.
Related literature
For applications of hydrazinecarbothioamide and its derivatives, see: Barber et al. (1992); Parrilha et al. (2011). For the synthesis, see: Klayman et al. (1979). For related structures, see: Dutta et al. (1997); Seena et al. (2006, 2008); Nisha et al. (2011). For standard bond-length data, see: Huheey et al. (1993); March (1992). For ring puckering analysis, see: Cremer & Pople (1975).
Experimental
Crystal data
|
Refinement
|
Data collection: APEX2 (Bruker, 2004); cell APEX2 and SAINT (Bruker, 2004); data reduction: SAINT and XPREP (Bruker, 2004); program(s) used to solve structure: SIR92 (Altomare et al., 1993); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008) and ORTEP-3 (Farrugia, 1997); software used to prepare material for publication: SHELXL97 and publCIF (Westrip, 2010).
Supporting information
10.1107/S1600536812007039/fj2514sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536812007039/fj2514Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536812007039/fj2514Isup3.cml
The preparation of this compound involves a two step process (Klayman et al., 1979). In the first step, cyclohexyl isothiocyanate (15 mmol, 2 ml) in 15 ml methanol and hydrazine hydrate (90 mmol, 4.3 ml) in 15 ml methanol were mixed and the resulting solution was stirred for an hour. The white product, N(4)-cyclohexylthiosemicarbazide formed was filtered, washed with methanol and dried in vacuo. In the second step, a methanolic (20 ml) solution of 4-cyclohexylthiosemicarbazide (1 mmol, 0.1732 g) was added to a solution of 5-bromo-3-methoxysalicylaldehyde (1 mmol, 0.2310 g) in 15 ml methanol and the reaction mixture was refluxed for 2 h in acid medium. The product formed was filtered, washed with methanol and dried in vacuo. Suitable crystals were grown by slow evaporation of its solution in 1:1 mixture of DMF and methanol over 2 days.
All H atoms on C were placed in calculated positions, guided by difference maps, with C—H bond distances 0.93–0.97 Å. H atoms were assigned as Uiso=1.2Ueq (1.5 for Me). N2—H2, N3—H3' and O2—H2' H atoms were located from difference maps and restrained using DFIX instructions.
Data collection: APEX2 (Bruker, 2004); cell
APEX2 and SAINT (Bruker, 2004); data reduction: SAINT and XPREP (Bruker, 2004); program(s) used to solve structure: SIR92 (Altomare et al., 1993); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008) and ORTEP-3 (Farrugia, 1997); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008) and publCIF (Westrip, 2010).Fig. 1. The title compound, showing 50% probability displacement ellipsoids and the atom-numbering scheme. | |
Fig. 2. A view of the unit cell along a axis. |
C15H20BrN3O2S | Z = 2 |
Mr = 386.31 | F(000) = 396 |
Triclinic, P1 | Dx = 1.541 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 5.7883 (4) Å | Cell parameters from 6391 reflections |
b = 11.412 (1) Å | θ = 2.7–27.9° |
c = 13.1312 (12) Å | µ = 2.60 mm−1 |
α = 75.194 (4)° | T = 296 K |
β = 86.493 (3)° | Block, colourless |
γ = 83.489 (3)° | 0.30 × 0.25 × 0.25 mm |
V = 832.72 (12) Å3 |
Bruker APEXII CCD diffractometer | 2923 independent reflections |
Radiation source: fine-focus sealed tube | 2521 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.070 |
Detector resolution: 8.33 pixels mm-1 | θmax = 25.0°, θmin = 2.7° |
ω and ϕ scan | h = −6→6 |
Absorption correction: multi-scan (SADABS; Bruker, 2004) | k = −13→13 |
Tmin = 0.509, Tmax = 0.562 | l = −15→15 |
12149 measured reflections |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.035 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.098 | w = 1/[σ2(Fo2) + (0.0194P)2 + 0.6265P] where P = (Fo2 + 2Fc2)/3 |
S = 1.12 | (Δ/σ)max = 0.001 |
2923 reflections | Δρmax = 0.27 e Å−3 |
213 parameters | Δρmin = −0.41 e Å−3 |
3 restraints | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0142 (18) |
C15H20BrN3O2S | γ = 83.489 (3)° |
Mr = 386.31 | V = 832.72 (12) Å3 |
Triclinic, P1 | Z = 2 |
a = 5.7883 (4) Å | Mo Kα radiation |
b = 11.412 (1) Å | µ = 2.60 mm−1 |
c = 13.1312 (12) Å | T = 296 K |
α = 75.194 (4)° | 0.30 × 0.25 × 0.25 mm |
β = 86.493 (3)° |
Bruker APEXII CCD diffractometer | 2923 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2004) | 2521 reflections with I > 2σ(I) |
Tmin = 0.509, Tmax = 0.562 | Rint = 0.070 |
12149 measured reflections |
R[F2 > 2σ(F2)] = 0.035 | 3 restraints |
wR(F2) = 0.098 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.12 | Δρmax = 0.27 e Å−3 |
2923 reflections | Δρmin = −0.41 e Å−3 |
213 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Br1 | −0.42662 (6) | 0.51878 (3) | 0.63154 (3) | 0.05382 (17) | |
S1 | 0.75115 (13) | 0.88705 (7) | 0.80347 (7) | 0.0448 (2) | |
O1 | −0.1322 (4) | 0.2029 (2) | 0.97526 (18) | 0.0520 (6) | |
O2 | 0.1901 (4) | 0.3362 (2) | 0.99890 (19) | 0.0471 (6) | |
N1 | 0.2789 (4) | 0.6672 (2) | 0.8130 (2) | 0.0377 (6) | |
N2 | 0.4703 (4) | 0.7170 (2) | 0.8316 (2) | 0.0398 (6) | |
N3 | 0.3358 (5) | 0.8967 (2) | 0.7247 (2) | 0.0407 (6) | |
C1 | −0.0696 (5) | 0.5340 (3) | 0.7638 (2) | 0.0384 (7) | |
H1 | −0.0523 | 0.6089 | 0.7167 | 0.046* | |
C2 | −0.2371 (5) | 0.4647 (3) | 0.7502 (2) | 0.0391 (7) | |
C3 | −0.2709 (5) | 0.3530 (3) | 0.8186 (2) | 0.0405 (7) | |
H3 | −0.3877 | 0.3081 | 0.8082 | 0.049* | |
C4 | −0.1268 (5) | 0.3105 (3) | 0.9024 (2) | 0.0379 (7) | |
C5 | 0.0459 (5) | 0.3795 (3) | 0.9177 (2) | 0.0358 (7) | |
C6 | 0.0749 (5) | 0.4910 (3) | 0.8492 (2) | 0.0360 (7) | |
C7 | 0.2600 (5) | 0.5588 (3) | 0.8659 (2) | 0.0370 (7) | |
H7 | 0.3681 | 0.5218 | 0.9169 | 0.044* | |
C8 | 0.5028 (5) | 0.8331 (3) | 0.7839 (2) | 0.0350 (7) | |
C9 | 0.3347 (5) | 1.0238 (3) | 0.6669 (2) | 0.0387 (7) | |
H9 | 0.4949 | 1.0399 | 0.6439 | 0.046* | |
C10 | 0.1921 (7) | 1.0438 (3) | 0.5704 (3) | 0.0517 (9) | |
H10A | 0.0369 | 1.0206 | 0.5918 | 0.062* | |
H10B | 0.2626 | 0.9922 | 0.5262 | 0.062* | |
C11 | 0.1758 (8) | 1.1755 (4) | 0.5079 (3) | 0.0687 (11) | |
H11A | 0.3286 | 1.1957 | 0.4788 | 0.082* | |
H11B | 0.0734 | 1.1866 | 0.4496 | 0.082* | |
C12 | 0.0842 (8) | 1.2596 (4) | 0.5760 (4) | 0.0710 (12) | |
H12A | −0.0747 | 1.2451 | 0.5992 | 0.085* | |
H12B | 0.0838 | 1.3435 | 0.5351 | 0.085* | |
C13 | 0.2320 (7) | 1.2397 (3) | 0.6707 (3) | 0.0602 (10) | |
H13A | 0.1675 | 1.2930 | 0.7145 | 0.072* | |
H13B | 0.3882 | 1.2601 | 0.6476 | 0.072* | |
C14 | 0.2423 (6) | 1.1085 (3) | 0.7344 (3) | 0.0481 (8) | |
H14A | 0.3423 | 1.0969 | 0.7936 | 0.058* | |
H14B | 0.0878 | 1.0898 | 0.7620 | 0.058* | |
C15 | −0.2900 (7) | 0.1217 (3) | 0.9629 (3) | 0.0551 (9) | |
H15A | −0.4466 | 0.1577 | 0.9693 | 0.083* | |
H15B | −0.2659 | 0.0468 | 1.0165 | 0.083* | |
H15C | −0.2643 | 0.1055 | 0.8947 | 0.083* | |
H3' | 0.211 (4) | 0.866 (3) | 0.723 (3) | 0.041 (9)* | |
H2 | 0.576 (5) | 0.672 (3) | 0.868 (2) | 0.040 (9)* | |
H2' | 0.144 (6) | 0.277 (2) | 1.042 (2) | 0.055 (11)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Br1 | 0.0582 (3) | 0.0553 (3) | 0.0480 (2) | −0.01859 (17) | −0.01714 (16) | −0.00386 (17) |
S1 | 0.0339 (4) | 0.0390 (5) | 0.0610 (5) | −0.0161 (3) | −0.0082 (4) | −0.0048 (4) |
O1 | 0.0655 (15) | 0.0405 (13) | 0.0502 (14) | −0.0291 (11) | −0.0122 (11) | 0.0010 (11) |
O2 | 0.0522 (14) | 0.0394 (13) | 0.0484 (14) | −0.0181 (11) | −0.0168 (11) | 0.0008 (11) |
N1 | 0.0335 (13) | 0.0323 (14) | 0.0491 (15) | −0.0107 (10) | −0.0055 (11) | −0.0096 (12) |
N2 | 0.0335 (14) | 0.0287 (14) | 0.0568 (17) | −0.0083 (11) | −0.0134 (12) | −0.0050 (12) |
N3 | 0.0372 (15) | 0.0336 (14) | 0.0506 (16) | −0.0158 (11) | −0.0100 (12) | −0.0019 (12) |
C1 | 0.0387 (16) | 0.0334 (16) | 0.0433 (17) | −0.0078 (13) | −0.0013 (13) | −0.0081 (14) |
C2 | 0.0411 (17) | 0.0388 (17) | 0.0390 (17) | −0.0107 (13) | −0.0054 (13) | −0.0088 (14) |
C3 | 0.0400 (17) | 0.0419 (18) | 0.0435 (18) | −0.0168 (13) | −0.0023 (13) | −0.0123 (14) |
C4 | 0.0413 (17) | 0.0338 (16) | 0.0396 (17) | −0.0147 (13) | 0.0013 (13) | −0.0068 (13) |
C5 | 0.0368 (16) | 0.0323 (16) | 0.0402 (17) | −0.0090 (12) | −0.0027 (13) | −0.0097 (13) |
C6 | 0.0351 (16) | 0.0311 (16) | 0.0443 (17) | −0.0081 (12) | −0.0020 (13) | −0.0117 (13) |
C7 | 0.0358 (16) | 0.0312 (16) | 0.0451 (18) | −0.0089 (12) | −0.0047 (13) | −0.0083 (14) |
C8 | 0.0333 (15) | 0.0342 (16) | 0.0393 (17) | −0.0099 (12) | 0.0014 (12) | −0.0103 (13) |
C9 | 0.0399 (16) | 0.0325 (16) | 0.0429 (17) | −0.0129 (12) | −0.0049 (13) | −0.0030 (13) |
C10 | 0.066 (2) | 0.044 (2) | 0.0432 (19) | −0.0136 (16) | −0.0122 (16) | −0.0028 (15) |
C11 | 0.094 (3) | 0.050 (2) | 0.054 (2) | −0.014 (2) | −0.016 (2) | 0.0069 (19) |
C12 | 0.067 (3) | 0.044 (2) | 0.086 (3) | −0.0003 (18) | 0.001 (2) | 0.010 (2) |
C13 | 0.071 (3) | 0.0349 (19) | 0.075 (3) | −0.0115 (17) | 0.014 (2) | −0.0166 (18) |
C14 | 0.057 (2) | 0.0419 (19) | 0.048 (2) | −0.0148 (15) | 0.0006 (16) | −0.0106 (15) |
C15 | 0.064 (2) | 0.044 (2) | 0.060 (2) | −0.0312 (17) | −0.0025 (18) | −0.0071 (17) |
Br1—C2 | 1.891 (3) | C7—H7 | 0.9300 |
S1—C8 | 1.685 (3) | C9—C14 | 1.506 (4) |
O1—C4 | 1.352 (4) | C9—C10 | 1.508 (4) |
O1—C15 | 1.417 (4) | C9—H9 | 0.9800 |
O2—C5 | 1.351 (4) | C10—C11 | 1.513 (5) |
O2—H2' | 0.826 (19) | C10—H10A | 0.9700 |
N1—C7 | 1.267 (4) | C10—H10B | 0.9700 |
N1—N2 | 1.363 (3) | C11—C12 | 1.507 (6) |
N2—C8 | 1.342 (4) | C11—H11A | 0.9700 |
N2—H2 | 0.840 (18) | C11—H11B | 0.9700 |
N3—C8 | 1.308 (4) | C12—C13 | 1.507 (6) |
N3—C9 | 1.454 (4) | C12—H12A | 0.9700 |
N3—H3' | 0.842 (18) | C12—H12B | 0.9700 |
C1—C2 | 1.366 (4) | C13—C14 | 1.513 (5) |
C1—C6 | 1.392 (4) | C13—H13A | 0.9700 |
C1—H1 | 0.9300 | C13—H13B | 0.9700 |
C2—C3 | 1.385 (4) | C14—H14A | 0.9700 |
C3—C4 | 1.374 (4) | C14—H14B | 0.9700 |
C3—H3 | 0.9300 | C15—H15A | 0.9600 |
C4—C5 | 1.394 (4) | C15—H15B | 0.9600 |
C5—C6 | 1.379 (4) | C15—H15C | 0.9600 |
C6—C7 | 1.449 (4) | ||
C4—O1—C15 | 118.5 (3) | C10—C9—H9 | 108.5 |
C5—O2—H2' | 113 (3) | C9—C10—C11 | 111.4 (3) |
C7—N1—N2 | 115.6 (3) | C9—C10—H10A | 109.3 |
C8—N2—N1 | 120.9 (2) | C11—C10—H10A | 109.3 |
C8—N2—H2 | 120 (2) | C9—C10—H10B | 109.3 |
N1—N2—H2 | 119 (2) | C11—C10—H10B | 109.3 |
C8—N3—C9 | 125.6 (2) | H10A—C10—H10B | 108.0 |
C8—N3—H3' | 119 (2) | C12—C11—C10 | 111.1 (3) |
C9—N3—H3' | 115 (2) | C12—C11—H11A | 109.4 |
C2—C1—C6 | 119.1 (3) | C10—C11—H11A | 109.4 |
C2—C1—H1 | 120.4 | C12—C11—H11B | 109.4 |
C6—C1—H1 | 120.4 | C10—C11—H11B | 109.4 |
C1—C2—C3 | 122.6 (3) | H11A—C11—H11B | 108.0 |
C1—C2—Br1 | 119.6 (2) | C11—C12—C13 | 110.8 (3) |
C3—C2—Br1 | 117.8 (2) | C11—C12—H12A | 109.5 |
C4—C3—C2 | 118.1 (3) | C13—C12—H12A | 109.5 |
C4—C3—H3 | 120.9 | C11—C12—H12B | 109.5 |
C2—C3—H3 | 120.9 | C13—C12—H12B | 109.5 |
O1—C4—C3 | 126.0 (3) | H12A—C12—H12B | 108.1 |
O1—C4—C5 | 113.8 (3) | C12—C13—C14 | 110.8 (3) |
C3—C4—C5 | 120.2 (3) | C12—C13—H13A | 109.5 |
O2—C5—C6 | 119.3 (3) | C14—C13—H13A | 109.5 |
O2—C5—C4 | 120.0 (3) | C12—C13—H13B | 109.5 |
C6—C5—C4 | 120.7 (3) | C14—C13—H13B | 109.5 |
C5—C6—C1 | 119.2 (3) | H13A—C13—H13B | 108.1 |
C5—C6—C7 | 119.2 (3) | C9—C14—C13 | 110.4 (3) |
C1—C6—C7 | 121.5 (3) | C9—C14—H14A | 109.6 |
N1—C7—C6 | 121.9 (3) | C13—C14—H14A | 109.6 |
N1—C7—H7 | 119.1 | C9—C14—H14B | 109.6 |
C6—C7—H7 | 119.1 | C13—C14—H14B | 109.6 |
N3—C8—N2 | 116.6 (3) | H14A—C14—H14B | 108.1 |
N3—C8—S1 | 124.5 (2) | O1—C15—H15A | 109.5 |
N2—C8—S1 | 118.8 (2) | O1—C15—H15B | 109.5 |
N3—C9—C14 | 111.7 (3) | H15A—C15—H15B | 109.5 |
N3—C9—C10 | 108.2 (2) | O1—C15—H15C | 109.5 |
C14—C9—C10 | 111.4 (3) | H15A—C15—H15C | 109.5 |
N3—C9—H9 | 108.5 | H15B—C15—H15C | 109.5 |
C14—C9—H9 | 108.5 | ||
C7—N1—N2—C8 | −176.8 (3) | C2—C1—C6—C7 | 178.1 (3) |
C6—C1—C2—C3 | 0.5 (5) | N2—N1—C7—C6 | −175.5 (3) |
C6—C1—C2—Br1 | −177.5 (2) | C5—C6—C7—N1 | −172.0 (3) |
C1—C2—C3—C4 | −1.0 (5) | C1—C6—C7—N1 | 10.1 (5) |
Br1—C2—C3—C4 | 177.1 (2) | C9—N3—C8—N2 | 179.5 (3) |
C15—O1—C4—C3 | 3.8 (5) | C9—N3—C8—S1 | −0.6 (5) |
C15—O1—C4—C5 | −175.5 (3) | N1—N2—C8—N3 | 4.1 (4) |
C2—C3—C4—O1 | −178.6 (3) | N1—N2—C8—S1 | −175.9 (2) |
C2—C3—C4—C5 | 0.7 (5) | C8—N3—C9—C14 | −86.2 (4) |
O1—C4—C5—O2 | 0.7 (4) | C8—N3—C9—C10 | 150.8 (3) |
C3—C4—C5—O2 | −178.7 (3) | N3—C9—C10—C11 | 178.1 (3) |
O1—C4—C5—C6 | 179.4 (3) | C14—C9—C10—C11 | 54.9 (4) |
C3—C4—C5—C6 | 0.0 (5) | C9—C10—C11—C12 | −54.6 (5) |
O2—C5—C6—C1 | 178.2 (3) | C10—C11—C12—C13 | 55.9 (5) |
C4—C5—C6—C1 | −0.4 (5) | C11—C12—C13—C14 | −57.4 (4) |
O2—C5—C6—C7 | 0.2 (4) | N3—C9—C14—C13 | −177.2 (3) |
C4—C5—C6—C7 | −178.4 (3) | C10—C9—C14—C13 | −56.0 (4) |
C2—C1—C6—C5 | 0.2 (5) | C12—C13—C14—C9 | 57.3 (4) |
Cg1 is the centroid of the C1-C6 ring. |
D—H···A | D—H | H···A | D···A | D—H···A |
O2—H2′···O1 | 0.83 (2) | 2.21 (4) | 2.616 (3) | 110 (3) |
O2—H2′···S1i | 0.83 (2) | 2.43 (3) | 3.142 (2) | 145 (3) |
N2—H2···O2i | 0.84 (2) | 2.25 (2) | 2.959 (3) | 142 (3) |
N3—H3′···S1ii | 0.84 (2) | 2.81 (3) | 3.483 (3) | 138 (3) |
C13—H13A···Cg1iii | 0.97 | 2.71 | 3.664 (4) | 168 |
Symmetry codes: (i) −x+1, −y+1, −z+2; (ii) x−1, y, z; (iii) x, y+1, z. |
Experimental details
Crystal data | |
Chemical formula | C15H20BrN3O2S |
Mr | 386.31 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 296 |
a, b, c (Å) | 5.7883 (4), 11.412 (1), 13.1312 (12) |
α, β, γ (°) | 75.194 (4), 86.493 (3), 83.489 (3) |
V (Å3) | 832.72 (12) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 2.60 |
Crystal size (mm) | 0.30 × 0.25 × 0.25 |
Data collection | |
Diffractometer | Bruker APEXII CCD diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2004) |
Tmin, Tmax | 0.509, 0.562 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 12149, 2923, 2521 |
Rint | 0.070 |
(sin θ/λ)max (Å−1) | 0.595 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.035, 0.098, 1.12 |
No. of reflections | 2923 |
No. of parameters | 213 |
No. of restraints | 3 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.27, −0.41 |
Computer programs: APEX2 (Bruker, 2004), APEX2 and SAINT (Bruker, 2004), SAINT and XPREP (Bruker, 2004), SIR92 (Altomare et al., 1993), SHELXTL (Sheldrick, 2008) and ORTEP-3 (Farrugia, 1997), SHELXL97 (Sheldrick, 2008) and publCIF (Westrip, 2010).
Cg1 is the centroid of the C1-C6 ring. |
D—H···A | D—H | H···A | D···A | D—H···A |
O2—H2'···O1 | 0.826 (19) | 2.21 (4) | 2.616 (3) | 110 (3) |
O2—H2'···S1i | 0.826 (19) | 2.43 (3) | 3.142 (2) | 145 (3) |
N2—H2···O2i | 0.840 (18) | 2.25 (2) | 2.959 (3) | 142 (3) |
N3—H3'···S1ii | 0.842 (18) | 2.81 (3) | 3.483 (3) | 138 (3) |
C13—H13A···Cg1iii | 0.97 | 2.71 | 3.664 (4) | 168 |
Symmetry codes: (i) −x+1, −y+1, −z+2; (ii) x−1, y, z; (iii) x, y+1, z. |
Acknowledgements
The authors are grateful to the Sophisticated Analytical Instruments Facility, Cochin University of Science and Technology, Kochi-22, India, for providing the single-crystal X-ray diffraction data. JMJ thanks the Council of Scientific and Industrial Research, New Delhi, India, for financial support in the form of a Junior Research Fellowship.
References
Altomare, A., Cascarano, G., Giacovazzo, C. & Guagliardi, A. (1993). J. Appl. Cryst. 26, 343–350. CrossRef Web of Science IUCr Journals Google Scholar
Barber, D. E., Lu, Z., Richardson, T. & Crabtree, R. H. (1992). Inorg. Chem. 31, 4709–4711. CrossRef CAS Web of Science Google Scholar
Bruker (2004). SADABS, APEX2, XPREP and SAINT. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Cremer, D. & Pople, J. A. (1975). J. Am. Chem. Soc. 97, 1354–1358. CrossRef CAS Web of Science Google Scholar
Dutta, S. K., McConville, D. B., Youngs, W. J. & Chaudhury, M. (1997). Inorg. Chem. 36, 2517–2522. CSD CrossRef CAS Web of Science Google Scholar
Farrugia, L. J. (1997). J. Appl. Cryst. 30, 565. CrossRef IUCr Journals Google Scholar
Huheey, J. E., Keiter, E. A. & Keiter, R. L. (1993). Inorganic Chemistry, Principles of Structure and Reactivity, 4th ed. New York: Harper Collins College Publishers. Google Scholar
Klayman, D. L., Bartosevich, J. F., Griffin, T. S., Mason, C. J. & Scovill, J. P. (1979). J. Med. Chem. 22, 855–862. CrossRef CAS PubMed Web of Science Google Scholar
March, J. (1992). Advanced Organic Chemistry, Reactions, Mechanisms and Structure, 4th ed. New York: Wiley. Google Scholar
Nisha, K., Sithambaresan, M. & Kurup, M. R. P. (2011). Acta Cryst. E67, o3420. Web of Science CSD CrossRef IUCr Journals Google Scholar
Parrilha, G. L., Da Silva, J. G., Gouveia, L. F., Gasparoto, A. K., Dias, R. P., Rocha, W. R., Santos, D. A., Speziali, N. L. & Beraldo, H. (2011). Eur. J. Med. Chem. 46, 1473–1482. Web of Science CSD CrossRef CAS PubMed Google Scholar
Seena, E. B., BessyRaj, B. N., Kurup, M. R. P. & Suresh, E. (2006). J. Chem. Crystallogr. 36, 189–193. Web of Science CSD CrossRef CAS Google Scholar
Seena, E. B., Kurup, M. R. P. & Suresh, E. (2008). J. Chem. Crystallogr. 38, 93–96. Web of Science CSD CrossRef CAS Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Westrip, S. P. (2010). J. Appl. Cryst. 43, 920–925. Web of Science CrossRef CAS IUCr Journals Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
The hydrazinecarbothioamides of aromatic aldehydes and ketones have been shown to possess a diverse range of biological activities (Parrilha et al., 2011) and catalytic activity (Barber et al., 1992). The pharmacological activity of hydrazinecarbothioamides of o-hydroxyaromatic aldehydes is correlated to their ability to form chelates with biologically important metal ions by bonding through O, N and S atoms (Dutta et al., 1997) and reductive capacity.
The title compound adopts an E configuration with respect to the C8—N2 bond (Fig. 1) similar to salicylaldehyde-N(4)-phenylthiosemicarbazone (Seena et al., 2008) but in contrast to 2-hydroxyacetophenone-N(4)-phenylthiosemicarbazone (Seena et al., 2006), where a Z configuration exists. This is confirmed by the N1—N2—C8—S1 torsion angle of -175.9 (2)°. Also E configuration is perceived about the azomethine bond [N2—N1—C7—C6 = -175.5 (3)°] (Nisha et al., 2011). Atom O1 lies cis to O2, with an O1—C4—C5—O2 torsion angle of 0.7 (4)°. This favours the intramolecular hydrogen bonding interaction between O1 and H attached to O2 atom.
The C8—S1 bond distance [1.685 (3) Å] is closer to C═S bond length [1.60 Å] than to C—S bond length [1.81 Å] (Huheey et al., 1993) which confirms the existence of the compound in the thioamido form in solid state. Also the C7—N1 bond distance [1.267 (4) Å] is appreciably close to that of a C═N double bond [1.28 Å] (March, 1992), confirming the azomethine bond formation.
The mean plane deviation calculations show that the molecule as a whole is non-planar. But the central hydrazinecarbothioamide group (C7/N1/N2/C8/S1/N3/C9) is almost planar with a maximum deviation from the mean plane of -0.054 (2) Å for atom N1. This is similar to that observed in salicylaldehyde-N(4)-phenyl thiosemicarbazone (Seena et al., 2008). The ring Cg1iii (comprising atoms C1—C6, with a maximum deviation of 0.005 (3) Å for C3) makes a dihedral angle of 18.90 (12)° with the hydrazinecarbothioamide moiety. Ring puckering analysis (Cremer & Pople, 1975) and least square plane calculations show that the cyclohexyl ring adopts a chair conformation (QT = 0.568 (4) Å) with the equatorial substitution at C9 for N3.
Fig. 2 shows the packing diagram of the title compound. The crystal packing involves one intramolecular and three intermolecular hydrogen bonds (Table 1). The intramolecular hydrogen bonding interaction, O2—H2'···O1 leads to the formation of a five membered ring comprising of atoms C4, C5, O2, H2' and O1 and facilitates almost planar geometry in part of the molecule. The intermolecular hydrogen bonds N2—H2···O2i and O2—H2'···S1i cause the pairing of molecules leading to the formation of centrosymmetric dimers in the crystal lattice. These dimers are stacked along the a axis and are interconnected through a third intermolecular hydrogen bond N3—H3'···S1ii to produce independent polymeric chains in the packing. Further stabilization is provided by C13—H13A···Cg1iii interaction.