metal-organic compounds
Redetermination at 180 K of a layered lanthanide–organic framework
aDepartment of Chemistry, University of Aveiro, CICECO, 3810-193 Aveiro, Portugal
*Correspondence e-mail: filipe.paz@ua.pt
The μ4-{[bis(hydrogen phosphonatomethyl)azaniumyl]methyl}phosphonato)lanthanum(III)], [La(C3H9NO9P3)]n, comprises an La3+ center and a H3nmp3− anion (where H3nmp3− is a residue of partially deprotonated nitrilotris(methylenephosphonic acid), namely {[bis(hydrogen phosphonatomethyl)azaniumyl]methyl}phosphonate). This study concerns a structural redetermination using single-crystal X-ray diffraction data, collected at the low temperature of 180 K, of a recently investigated material whose structural details have been proposed from powder X-ray diffraction studies [Silva et al. (2011). J. Am. Chem. Soc. 133, 15120–15138]. The main difference between the two models rests on the position of the H atoms. While two H atoms were modeled as attached to the same phosphonate group in the powder determination, in the current model, the same H atoms are instead distributed among two of these groups. The sample studied was an inversion twin.
of the title compound, poly[(Related literature
For general background to the preparation of coordination compounds using lanthanide oxides, see: Liu et al. (2006). For previous research studies from our group on metal–organic frameworks (MOFs), see: Silva et al. (2011); Cunha-Silva et al. (2007); Cunha-Silva, Ananias et al. (2009); Cunha-Silva, Lima et al. (2009); Shi et al. (2008); Paz et al. (2004, 2005). For single-crystal structural studies on MOFs having residues of (carboxymethyl)iminodi(methylphosphonic acid), see: Tang et al. (2006). For a description of the graph-set notation for hydrogen-bonded aggregates, see: Grell et al. (1999). For a description of the see: Flack (1983).
Experimental
Crystal data
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Data collection: APEX2 (Bruker, 2006); cell APEX2; data reduction: SAINT-Plus (Bruker, 2005); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: DIAMOND (Brandenburg, 2009); software used to prepare material for publication: SHELXTL.
Supporting information
10.1107/S1600536812005508/gk2450sup1.cif
contains datablocks global, I. DOI:Supporting information file. DOI: 10.1107/S1600536812005508/gk2450Isup2.cdx
Structure factors: contains datablock I. DOI: 10.1107/S1600536812005508/gk2450Isup3.hkl
Chemicals have been purchased from commercial sources and were used as received without further purification.
A reactive mixture containing nitrilotris(methylenephosphonic acid) (H6nmp, 0.26 g, 0.87 mmol, Fluka, 97%) and La2O3 (0.14 g, 0.43 mmol, Inframat Advanced Materials, 99.995%) in ca 10 g of distilled water (molar ratios of about 2: 1: 1300) was stirred thoroughly in open air (ambient temperature) for 5 minutes. The resulting homogeneous suspension was transferred into an adapted teflon-lined Parr Instruments reaction vessel (autoclave with internal volume of ca 24 ml) which was then placed inside a preheated oven at 165 °C. The reaction took place under static conditions over a period of 72 h.
The isolated material consisted systematically of physical mixtures composed of the desired material (the two-dimensional MOF structure) alongside with other products. It was possible, however, to isolate from these mixtures a crystal suitable for single-crystal X-ray diffraction data collection (Figure 4).
The reaction conditions highlighted above were fine tuned in order to find the optimal parameters which allowed the isolation of [La(H3nmp)] (1) as a phase pure compound. Optimal conditions: (i) temperature of 160 °C or 190 °C; (ii) reaction time of 72 h; (iii) pH value of the initial reactive mixture ca 1. After reacting, the reaction vessel had to be quenched in cold water to drastically and rapidly decrease the temperature to close to the ambient one. White suspensions are typically isolated with the final product being recovered by vacuum filtration, washed with copious amounts of distilled water and then air-dried overnight.
Hydrogen atoms bound to carbon, nitrogen and oxygen atoms were placed at their idealized positions with C—H = 0.99 Å, N—H = 0.93 Å and O—H = 0.84 Å. All these H atoms were included in the final structural model in riding-motion approximation, with isotropic displacement parameters fixed at 1.2 (for the N—H and –CH2– moieties) or 1.5 (for the O—H moieties) times Ueq of the heteroatom (C, N or O) to which they are attached.
The crystal selected for data collection was found to be twinned by inversion and at the last stages of the
procedure the TWIN instruction was used alongside with one BASF (Flack) parameter wich refined to 0.44 (4) (Flack, 1983). A total of 1229 Friedel pairs have been measured and have been used as independent data during the procedure.The highest peak (3.85 e.A-3) is located at 1.36 Å from O2, which is in the middle of the bond O2—La1. The deepest hole (-1.65 e.A-3) is located at 0.77 Å from La1. Attempts to correct these anomalies proved to be unsuccessful.
Data collection: APEX2 (Bruker, 2006); cell
APEX2 (Bruker, 2006); data reduction: SAINT-Plus (Bruker, 2005); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: DIAMOND (Brandenburg, 2009); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).Fig. 1. Asymmetric unit of the title compound showing all non-H atoms represented as displacement ellipsoids drawn at the 50% probability level and H atoms as small spheres with arbitrary radius. The coordination sphere of the La1 center has been completed for clarity and the atomic labeling is provided for all non-H atoms. Symmetry transformations used to generate equivalent atoms: (i) 1/2-x, y, 1/2+z, (ii) -1/2+x, 1-y, z, (iii) 1-x, 1-y, 1/2+z. | |
Fig. 2. Overlay of the asymmetric unit of the title compound: in pink there are the coordinates of the single-crystal determination and in blue those as derived from the powder X-ray diffraction studies. | |
Fig. 3. Schematic representation of the crystal packing of the title compound viewed in perspective along the [001] direction of the unit cell. Two-dimensional [La(H3nmp)] networks close pack perpendicular to the b-axis of the unit cell mediated by weak C—H···O contacts (not shown). Intralayer N—H···O and O—H···O hydrogen bonds are depicted as dashed blue lines and the La3+ metallic centers are depicted as green polyhedra. See Table 2 for geometrical details on the represented hydrogen bonding interactions. | |
Fig. 4. SEM images showing the two main different morphologies of crystallite aggregates isolated directly from the reaction vessels: (top) phase-pure [La(H3nmp)] isolated as a microcrystalline powder; (bottom) physical mixture of the desired material (square platelet crystals) alongside with other by-products (needle shaped). |
[La(C3H9NO9P3)] | F(000) = 832 |
Mr = 434.93 | Dx = 2.743 Mg m−3 |
Orthorhombic, Pca21 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2c -2ac | Cell parameters from 3599 reflections |
a = 9.144 (3) Å | θ = 3.5–22.9° |
b = 11.727 (4) Å | µ = 4.55 mm−1 |
c = 9.823 (3) Å | T = 180 K |
V = 1053.3 (6) Å3 | Plate, colourless |
Z = 4 | 0.05 × 0.05 × 0.01 mm |
Bruker X8 KappaCCD APEXII diffractometer | 2728 independent reflections |
Radiation source: fine-focus sealed tube | 1980 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.107 |
ω and ϕ scans | θmax = 29.1°, θmin = 4.1° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −12→12 |
Tmin = 0.804, Tmax = 0.978 | k = −15→16 |
31245 measured reflections | l = −13→12 |
Refinement on F2 | Hydrogen site location: inferred from neighbouring sites |
Least-squares matrix: full | H-atom parameters constrained |
R[F2 > 2σ(F2)] = 0.047 | w = 1/[σ2(Fo2) + (0.0552P)2] where P = (Fo2 + 2Fc2)/3 |
wR(F2) = 0.109 | (Δ/σ)max = 0.001 |
S = 1.02 | Δρmax = 3.98 e Å−3 |
2728 reflections | Δρmin = −1.63 e Å−3 |
158 parameters | Extinction correction: SHELXTL (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
1 restraint | Extinction coefficient: 0.0026 (4) |
Primary atom site location: structure-invariant direct methods | Absolute structure: Flack (1983), Friedel pairs 1229 |
Secondary atom site location: difference Fourier map | Absolute structure parameter: 0.44 (4) |
[La(C3H9NO9P3)] | V = 1053.3 (6) Å3 |
Mr = 434.93 | Z = 4 |
Orthorhombic, Pca21 | Mo Kα radiation |
a = 9.144 (3) Å | µ = 4.55 mm−1 |
b = 11.727 (4) Å | T = 180 K |
c = 9.823 (3) Å | 0.05 × 0.05 × 0.01 mm |
Bruker X8 KappaCCD APEXII diffractometer | 2728 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | 1980 reflections with I > 2σ(I) |
Tmin = 0.804, Tmax = 0.978 | Rint = 0.107 |
31245 measured reflections |
R[F2 > 2σ(F2)] = 0.047 | H-atom parameters constrained |
wR(F2) = 0.109 | Δρmax = 3.98 e Å−3 |
S = 1.02 | Δρmin = −1.63 e Å−3 |
2728 reflections | Absolute structure: Flack (1983), Friedel pairs 1229 |
158 parameters | Absolute structure parameter: 0.44 (4) |
1 restraint |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
La1 | 0.24189 (4) | 0.50484 (3) | 0.3327 (2) | 0.01280 (14) | |
N1 | 0.4362 (7) | 0.2034 (6) | 0.1755 (7) | 0.0138 (15) | |
H1C | 0.4234 | 0.2632 | 0.2366 | 0.017* | |
P1 | 0.5445 (2) | 0.40513 (17) | 0.0750 (3) | 0.0137 (4) | |
P2 | 0.7084 (2) | 0.1567 (2) | 0.2951 (2) | 0.0195 (5) | |
P3 | 0.1566 (2) | 0.26939 (17) | 0.0838 (3) | 0.0160 (4) | |
O1 | 0.4924 (6) | 0.4633 (7) | −0.0534 (7) | 0.0171 (16) | |
O2 | 0.7098 (5) | 0.4276 (4) | 0.0878 (6) | 0.0151 (11) | |
O3 | 0.4646 (7) | 0.4334 (5) | 0.2059 (7) | 0.0167 (14) | |
O4 | 0.7137 (6) | 0.2775 (5) | 0.3365 (9) | 0.0232 (13) | |
O5 | 0.8051 (6) | 0.1208 (5) | 0.1770 (6) | 0.0235 (15) | |
O6 | 0.7461 (6) | 0.0712 (5) | 0.4149 (6) | 0.0172 (13) | |
H6 | 0.7437 | 0.1062 | 0.4895 | 0.026* | |
O7 | 0.1320 (6) | 0.3460 (5) | 0.2011 (6) | 0.0191 (13) | |
O8 | 0.2064 (6) | 0.3201 (5) | −0.0494 (6) | 0.0189 (13) | |
O9 | 0.0235 (7) | 0.1894 (6) | 0.0523 (7) | 0.027 (2) | |
H9 | −0.0065 | 0.1599 | 0.1250 | 0.040* | |
C1 | 0.5143 (8) | 0.2523 (8) | 0.0560 (8) | 0.016 (2) | |
H1A | 0.4561 | 0.2382 | −0.0273 | 0.019* | |
H1B | 0.6097 | 0.2134 | 0.0452 | 0.019* | |
C2 | 0.5238 (9) | 0.1137 (8) | 0.2501 (9) | 0.018 (2) | |
H2A | 0.5293 | 0.0446 | 0.1924 | 0.022* | |
H2B | 0.4709 | 0.0928 | 0.3345 | 0.022* | |
C3 | 0.2869 (9) | 0.1609 (8) | 0.1421 (9) | 0.0147 (18) | |
H3A | 0.2460 | 0.1235 | 0.2241 | 0.018* | |
H3B | 0.2958 | 0.1020 | 0.0704 | 0.018* |
U11 | U22 | U33 | U12 | U13 | U23 | |
La1 | 0.0123 (2) | 0.0165 (2) | 0.0097 (2) | −0.0002 (2) | 0.0000 (3) | −0.0002 (3) |
N1 | 0.011 (3) | 0.014 (4) | 0.016 (4) | 0.000 (3) | −0.001 (3) | −0.003 (3) |
P1 | 0.0134 (9) | 0.0172 (10) | 0.0104 (10) | −0.0007 (8) | 0.0000 (10) | −0.0005 (12) |
P2 | 0.0169 (10) | 0.0224 (13) | 0.0194 (13) | −0.0018 (9) | −0.0002 (9) | 0.0023 (10) |
P3 | 0.0134 (9) | 0.0199 (10) | 0.0147 (10) | −0.0015 (8) | −0.0002 (10) | 0.0001 (14) |
O1 | 0.017 (3) | 0.020 (4) | 0.014 (4) | 0.001 (2) | −0.004 (2) | 0.013 (3) |
O2 | 0.011 (2) | 0.021 (3) | 0.014 (3) | 0.000 (2) | 0.005 (3) | 0.001 (3) |
O3 | 0.023 (3) | 0.014 (4) | 0.014 (3) | −0.003 (3) | 0.002 (3) | 0.000 (3) |
O4 | 0.024 (3) | 0.019 (3) | 0.027 (3) | 0.001 (2) | 0.000 (4) | −0.001 (4) |
O5 | 0.015 (3) | 0.030 (4) | 0.025 (4) | −0.007 (3) | 0.004 (3) | −0.010 (3) |
O6 | 0.019 (3) | 0.014 (3) | 0.018 (3) | −0.003 (2) | 0.001 (3) | 0.001 (3) |
O7 | 0.016 (3) | 0.025 (4) | 0.016 (3) | −0.001 (2) | −0.002 (3) | 0.000 (3) |
O8 | 0.019 (3) | 0.022 (4) | 0.016 (3) | −0.002 (3) | 0.004 (3) | 0.006 (3) |
O9 | 0.019 (4) | 0.035 (4) | 0.026 (5) | −0.006 (3) | −0.002 (3) | −0.004 (3) |
C1 | 0.019 (4) | 0.024 (5) | 0.005 (6) | −0.006 (3) | 0.003 (3) | 0.002 (4) |
C2 | 0.019 (4) | 0.015 (5) | 0.022 (5) | −0.003 (3) | 0.000 (3) | 0.000 (4) |
C3 | 0.010 (4) | 0.012 (4) | 0.022 (5) | 0.002 (3) | −0.001 (3) | 0.002 (4) |
La1—O1i | 2.466 (6) | P2—O4 | 1.475 (6) |
La1—O1ii | 2.701 (6) | P2—O5 | 1.518 (6) |
La1—O2iii | 2.549 (7) | P2—O6 | 1.584 (7) |
La1—O2ii | 2.665 (7) | P2—C2 | 1.817 (8) |
La1—O3 | 2.530 (6) | P3—O7 | 1.478 (6) |
La1—O3iii | 2.916 (6) | P3—O8 | 1.508 (6) |
La1—O4iii | 2.565 (6) | P3—O9 | 1.567 (6) |
La1—O7 | 2.480 (6) | P3—C3 | 1.835 (9) |
La1—O8i | 2.502 (6) | O6—H6 | 0.8400 |
N1—C1 | 1.489 (10) | O9—H9 | 0.8400 |
N1—C3 | 1.490 (10) | C1—H1A | 0.9900 |
N1—C2 | 1.512 (11) | C1—H1B | 0.9900 |
N1—H1C | 0.9300 | C2—H2A | 0.9900 |
P1—O1 | 1.511 (7) | C2—H2B | 0.9900 |
P1—O3 | 1.515 (7) | C3—H3A | 0.9900 |
P1—O2 | 1.540 (5) | C3—H3B | 0.9900 |
P1—C1 | 1.823 (10) | ||
O1i—La1—O7 | 74.7 (2) | C2—N1—H1C | 106.2 |
O1i—La1—O8i | 77.5 (2) | O1—P1—O3 | 117.2 (3) |
O7—La1—O8i | 70.58 (19) | O1—P1—O2 | 107.4 (3) |
O1i—La1—O3 | 149.0 (2) | O3—P1—O2 | 111.5 (4) |
O7—La1—O3 | 79.7 (2) | O1—P1—C1 | 108.1 (4) |
O8i—La1—O3 | 77.8 (2) | O3—P1—C1 | 103.2 (4) |
O1i—La1—O2iii | 112.92 (19) | O2—P1—C1 | 109.0 (3) |
O7—La1—O2iii | 72.2 (2) | O1—P1—La1iv | 55.4 (2) |
O8i—La1—O2iii | 136.7 (2) | O3—P1—La1iv | 147.0 (3) |
O3—La1—O2iii | 74.4 (2) | O2—P1—La1iv | 54.2 (2) |
O1i—La1—O4iii | 95.9 (2) | C1—P1—La1iv | 109.6 (3) |
O7—La1—O4iii | 135.6 (2) | O1—P1—La1v | 132.2 (3) |
O8i—La1—O4iii | 150.9 (3) | O3—P1—La1v | 62.7 (3) |
O3—La1—O4iii | 114.7 (2) | O2—P1—La1v | 48.9 (2) |
O2iii—La1—O4iii | 72.1 (2) | C1—P1—La1v | 118.6 (3) |
O1i—La1—O2ii | 77.1 (2) | La1iv—P1—La1v | 97.44 (6) |
O7—La1—O2ii | 141.3 (2) | O4—P2—O5 | 117.3 (4) |
O8i—La1—O2ii | 77.91 (19) | O4—P2—O6 | 113.3 (4) |
O3—La1—O2ii | 115.33 (19) | O5—P2—O6 | 105.4 (3) |
O2iii—La1—O2ii | 144.5 (2) | O4—P2—C2 | 111.4 (4) |
O4iii—La1—O2ii | 73.0 (2) | O5—P2—C2 | 106.1 (4) |
O1i—La1—O1ii | 128.4 (3) | O6—P2—C2 | 101.9 (4) |
O7—La1—O1ii | 133.2 (2) | O7—P3—O8 | 118.9 (3) |
O8i—La1—O1ii | 76.0 (2) | O7—P3—O9 | 113.5 (4) |
O3—La1—O1ii | 61.7 (2) | O8—P3—O9 | 107.4 (4) |
O2iii—La1—O1ii | 116.8 (2) | O7—P3—C3 | 106.1 (4) |
O4iii—La1—O1ii | 86.9 (2) | O8—P3—C3 | 110.4 (4) |
O2ii—La1—O1ii | 54.57 (17) | O9—P3—C3 | 98.7 (4) |
O1i—La1—O3iii | 59.15 (18) | P1—O1—La1vi | 137.9 (3) |
O7—La1—O3iii | 67.16 (19) | P1—O1—La1iv | 97.2 (3) |
O8i—La1—O3iii | 125.26 (18) | La1vi—O1—La1iv | 124.5 (3) |
O3—La1—O3iii | 124.9 (3) | P1—O2—La1v | 104.1 (3) |
O2iii—La1—O3iii | 54.55 (17) | P1—O2—La1iv | 97.9 (3) |
O4iii—La1—O3iii | 70.84 (19) | La1v—O2—La1iv | 140.9 (2) |
O2ii—La1—O3iii | 118.15 (17) | P1—O3—La1 | 151.4 (4) |
O1ii—La1—O3iii | 157.6 (2) | P1—O3—La1v | 89.8 (3) |
O1i—La1—P1ii | 104.7 (2) | La1—O3—La1v | 114.0 (3) |
O7—La1—P1ii | 150.21 (15) | P2—O4—La1v | 162.8 (5) |
O8i—La1—P1ii | 80.14 (15) | P2—O6—H6 | 109.5 |
O3—La1—P1ii | 89.10 (16) | P3—O7—La1 | 143.2 (3) |
O2iii—La1—P1ii | 131.17 (12) | P3—O8—La1vi | 143.2 (4) |
O4iii—La1—P1ii | 74.15 (18) | P3—O9—H9 | 109.5 |
O2ii—La1—P1ii | 27.94 (11) | N1—C1—P1 | 111.7 (6) |
O1ii—La1—P1ii | 27.43 (14) | N1—C1—H1A | 109.3 |
O3iii—La1—P1ii | 138.88 (14) | P1—C1—H1A | 109.3 |
O1i—La1—P1iii | 86.30 (16) | N1—C1—H1B | 109.3 |
O7—La1—P1iii | 67.49 (15) | P1—C1—H1B | 109.3 |
O8i—La1—P1iii | 137.68 (15) | H1A—C1—H1B | 107.9 |
O3—La1—P1iii | 99.78 (19) | N1—C2—P2 | 114.6 (6) |
O2iii—La1—P1iii | 27.06 (11) | N1—C2—H2A | 108.6 |
O4iii—La1—P1iii | 68.66 (18) | P2—C2—H2A | 108.6 |
O2ii—La1—P1iii | 136.09 (12) | N1—C2—H2B | 108.6 |
O1ii—La1—P1iii | 140.31 (18) | P2—C2—H2B | 108.6 |
O3iii—La1—P1iii | 27.49 (13) | H2A—C2—H2B | 107.6 |
P1ii—La1—P1iii | 142.12 (7) | N1—C3—P3 | 115.6 (6) |
C1—N1—C3 | 113.2 (6) | N1—C3—H3A | 108.4 |
C1—N1—C2 | 113.3 (7) | P3—C3—H3A | 108.4 |
C3—N1—C2 | 111.0 (6) | N1—C3—H3B | 108.4 |
C1—N1—H1C | 106.2 | P3—C3—H3B | 108.4 |
C3—N1—H1C | 106.2 | H3A—C3—H3B | 107.4 |
O3—P1—O1—La1vi | −45.7 (9) | O2ii—La1—O3—La1v | −15.9 (3) |
O2—P1—O1—La1vi | −172.1 (6) | O1ii—La1—O3—La1v | −5.6 (3) |
C1—P1—O1—La1vi | 70.4 (7) | O3iii—La1—O3—La1v | 149.2 (3) |
La1iv—P1—O1—La1vi | 172.0 (9) | P1ii—La1—O3—La1v | −6.0 (2) |
La1v—P1—O1—La1vi | −122.4 (5) | P1iii—La1—O3—La1v | 137.0 (2) |
O3—P1—O1—La1iv | 142.3 (3) | O5—P2—O4—La1v | 28.8 (13) |
O2—P1—O1—La1iv | 15.8 (4) | O6—P2—O4—La1v | 152.0 (11) |
C1—P1—O1—La1iv | −101.7 (3) | C2—P2—O4—La1v | −93.7 (12) |
La1v—P1—O1—La1iv | 65.6 (4) | O8—P3—O7—La1 | −47.7 (7) |
O1—P1—O2—La1v | 131.3 (4) | O9—P3—O7—La1 | −175.5 (6) |
O3—P1—O2—La1v | 1.5 (4) | C3—P3—O7—La1 | 77.3 (7) |
C1—P1—O2—La1v | −111.8 (3) | O1i—La1—O7—P3 | −179.2 (6) |
La1iv—P1—O2—La1v | 147.4 (3) | O8i—La1—O7—P3 | −97.3 (6) |
O1—P1—O2—La1iv | −16.1 (4) | O3—La1—O7—P3 | −16.8 (6) |
O3—P1—O2—La1iv | −145.8 (3) | O2iii—La1—O7—P3 | 60.0 (6) |
C1—P1—O2—La1iv | 100.8 (3) | O4iii—La1—O7—P3 | 98.1 (6) |
La1v—P1—O2—La1iv | −147.4 (3) | O2ii—La1—O7—P3 | −134.7 (5) |
O1—P1—O3—La1 | 22.1 (9) | O1ii—La1—O7—P3 | −50.4 (7) |
O2—P1—O3—La1 | 146.5 (7) | O3iii—La1—O7—P3 | 118.3 (6) |
C1—P1—O3—La1 | −96.6 (8) | P1ii—La1—O7—P3 | −86.3 (7) |
La1iv—P1—O3—La1 | 89.8 (8) | P1iii—La1—O7—P3 | 88.5 (6) |
La1v—P1—O3—La1 | 147.8 (8) | O7—P3—O8—La1vi | −4.8 (7) |
O1—P1—O3—La1v | −125.7 (4) | O9—P3—O8—La1vi | 125.8 (6) |
O2—P1—O3—La1v | −1.3 (3) | C3—P3—O8—La1vi | −127.7 (6) |
C1—P1—O3—La1v | 115.6 (3) | C3—N1—C1—P1 | 113.8 (6) |
La1iv—P1—O3—La1v | −58.1 (5) | C2—N1—C1—P1 | −118.5 (6) |
O1i—La1—O3—P1 | 91.8 (9) | O1—P1—C1—N1 | −129.9 (5) |
O7—La1—O3—P1 | 57.4 (8) | O3—P1—C1—N1 | −5.0 (7) |
O8i—La1—O3—P1 | 129.6 (8) | O2—P1—C1—N1 | 113.6 (6) |
O2iii—La1—O3—P1 | −16.9 (7) | La1iv—P1—C1—N1 | 171.3 (5) |
O4iii—La1—O3—P1 | −78.3 (8) | La1v—P1—C1—N1 | 60.8 (6) |
O2ii—La1—O3—P1 | −160.3 (7) | C1—N1—C2—P2 | 50.9 (9) |
O1ii—La1—O3—P1 | −149.9 (8) | C3—N1—C2—P2 | 179.7 (6) |
O3iii—La1—O3—P1 | 4.8 (7) | O4—P2—C2—N1 | 37.7 (8) |
P1ii—La1—O3—P1 | −150.3 (8) | O5—P2—C2—N1 | −91.0 (7) |
P1iii—La1—O3—P1 | −7.4 (8) | O6—P2—C2—N1 | 158.9 (6) |
O1i—La1—O3—La1v | −123.8 (4) | C1—N1—C3—P3 | −63.3 (8) |
O7—La1—O3—La1v | −158.2 (3) | C2—N1—C3—P3 | 167.8 (6) |
O8i—La1—O3—La1v | −86.1 (3) | O7—P3—C3—N1 | −65.8 (7) |
O2iii—La1—O3—La1v | 127.5 (3) | O8—P3—C3—N1 | 64.2 (7) |
O4iii—La1—O3—La1v | 66.1 (4) | O9—P3—C3—N1 | 176.5 (6) |
Symmetry codes: (i) −x+1/2, y, z+1/2; (ii) −x+1, −y+1, z+1/2; (iii) x−1/2, −y+1, z; (iv) −x+1, −y+1, z−1/2; (v) x+1/2, −y+1, z; (vi) −x+1/2, y, z−1/2. |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1C···O3 | 0.93 | 2.05 | 2.725 (9) | 128 |
N1—H1C···O8i | 0.93 | 2.50 | 3.298 (9) | 143 |
O6—H6···O5vii | 0.84 | 1.90 | 2.680 (8) | 153 |
O9—H9···O5viii | 0.84 | 1.85 | 2.478 (8) | 130 |
Symmetry codes: (i) −x+1/2, y, z+1/2; (vii) −x+3/2, y, z+1/2; (viii) x−1, y, z. |
Experimental details
Crystal data | |
Chemical formula | [La(C3H9NO9P3)] |
Mr | 434.93 |
Crystal system, space group | Orthorhombic, Pca21 |
Temperature (K) | 180 |
a, b, c (Å) | 9.144 (3), 11.727 (4), 9.823 (3) |
V (Å3) | 1053.3 (6) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 4.55 |
Crystal size (mm) | 0.05 × 0.05 × 0.01 |
Data collection | |
Diffractometer | Bruker X8 KappaCCD APEXII diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 1996) |
Tmin, Tmax | 0.804, 0.978 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 31245, 2728, 1980 |
Rint | 0.107 |
(sin θ/λ)max (Å−1) | 0.685 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.047, 0.109, 1.02 |
No. of reflections | 2728 |
No. of parameters | 158 |
No. of restraints | 1 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 3.98, −1.63 |
Absolute structure | Flack (1983), Friedel pairs 1229 |
Absolute structure parameter | 0.44 (4) |
Computer programs: APEX2 (Bruker, 2006), SAINT-Plus (Bruker, 2005), SHELXTL (Sheldrick, 2008), DIAMOND (Brandenburg, 2009).
La1—O1i | 2.466 (6) | La1—O3iii | 2.916 (6) |
La1—O1ii | 2.701 (6) | La1—O4iii | 2.565 (6) |
La1—O2iii | 2.549 (7) | La1—O7 | 2.480 (6) |
La1—O2ii | 2.665 (7) | La1—O8i | 2.502 (6) |
La1—O3 | 2.530 (6) |
Symmetry codes: (i) −x+1/2, y, z+1/2; (ii) −x+1, −y+1, z+1/2; (iii) x−1/2, −y+1, z. |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1C···O3 | 0.93 | 2.05 | 2.725 (9) | 128 |
N1—H1C···O8i | 0.93 | 2.50 | 3.298 (9) | 143 |
O6—H6···O5iv | 0.84 | 1.90 | 2.680 (8) | 153 |
O9—H9···O5v | 0.84 | 1.85 | 2.478 (8) | 130 |
Symmetry codes: (i) −x+1/2, y, z+1/2; (iv) −x+3/2, y, z+1/2; (v) x−1, y, z. |
Acknowledgements
This work was financially supported by FEDER through the Operational Programme for Competitiveness Factors – COMPETE, and by Portuguese national funding through Fundação para a Ciência e a Tecnologia (FCT, Portugal), under the research and development project PTDC/QUI-QUI/098098/2008 (FCOMP-01-0124-FEDER-010785). We are also grateful to FCT for the PhD and postdoctoral research grants Nos. SFRH/BD/46601/2008 (to PS) and SFRH/BPD/63736/2009 (to JAF), respectively, and for specific funding towards the purchase of the single-crystal X-ray diffractometer.
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
During the past decade our research group has been highly active in the design, synthesis and structural characterization of multi-dimensional coordination polymers, also commonly denominated by metal-organic frameworks (MOFs) (Cunha-Silva, Lima et al., 2009; Cunha-Silva et al., 2007; Paz et al., 2004; Paz et al., 2005; Shi et al., 2008; Silva et al., 2011). The title material, [La(H3nmp)] (1) [where H3nmp3- is a residue of partially deprotonated nitrilotris(methylenephosphonic acid)], was recently isolated for the first time as microcrystalline powders which prevented a priori a straightforward structural elucidation using single-crystal X-ray diffraction studies (Silva et al., 2011). Structural details were, ultimately, unveiled using laboratory powder X-ray diffraction studies (PXRD) at ambient temperature. Indeed, materials belonging to this class of compounds are usually isolated as microcrystalline powders, as found using (carboxymethyl)iminodi(methylphosphonic acid) (Cunha-Silva, Ananias et al., 2009; Cunha-Silva, Lima et al., 2009) and also nitrilotris(methylenephosphonic acid) (H6nmp) (Cunha-Silva et al., 2007; Silva et al., 2011). A search in the literature reveals a sole publication containing two single-crystal structural determinations of MOFs combining residues of (carboxymethyl)iminodi(methylphosphonic acid) and rare-earth elements (Tang et al., 2006). To the best of our knowledge the structural determination reported in the communication is the first based on single-crystal data for materials combining residues of H6nmp and rare-earth elements.
Changes in the synthetic route allowed us to obtain single crystals of 1 which were used for a detailed single-crystal X-ray diffraction study. We note that differences from the original synthetic procedure are solely based on two essential features: (i) the metal precursor, which we have changed from LaCl3.7H2O to La2O3; (ii) the heating method, we now employ typical static conditions for the hydrothermal synthesis, instead of the two previously used techniques, a dynamic (with constant rotation) hydrothermal synthesis and microwave heating.
The asymmetric unit of the title compound (see Scheme and Figure 1) comprises a La3+ metal center and a whole H3nmp3- anion. The single La3+ center is nine-coordinated, {LaO9}, to a total of seven phosphonate groups arising from four symmetry-related H3nmp3- anionic ligands, with the coordination polyhedron resembling a highly distorted tricapped trigonal prism. Conversely, the H3nmp3- anion coordinates to a total of four symmetry-related La3+ metal centers, with such connectivity leading to the formation of a two-dimensional coordination polymer perpendicular to the [010] direction of the unit cell.
The crystal structure unveiled from single-crystal X-ray diffraction resembles that previously described by us and based on powder X-ray diffraction data (Silva et al., 2011): (i) both structures were solved in the Pca21 orthorhombic space group; (ii) despite the differences in temperature from the two data sets, the unit cell parameters are very similar; (iii) the coordinates of the non-hydrogen atoms in the two models are highly superimposable with the differences on spatial positions being smaller than ca 0.23 Å (Figure 2). For example, the La—O distances range from 2.466 (6) to 2.916 (6) Å in the single-crystal structural determination (Table 1) and from 2.487 (12) to 2.932 (11) Å in the powder model.
The main difference between the two models resides on the position of the hydrogen atoms. While two H atoms were modeled as attached to the same phosphonate group in the powder determination, in the current model the same hydrogen atoms are instead distributed among two of such groups. In the powder determination the location of the hydrogen atoms was inferred from NMR data of similar compounds (Cunha-Silva et al., 2007). In opposition, in the present single-crystal determination the observed P—O distances were used for the location of the same hydrogen atoms. The hydrogen bonding network present in the crystal is, thus, slightly distinct from that suggested by the previous powder X-ray studies. N1—H1 interacts with two neighboring phosphonate groups coordinated to the metal center (O1 and O8), in a typical bifurcated motif. The O5, O6 and O9 oxygen atoms belonging to the protonated phosphonate groups (P2 and P3) are engaged in strong O—H···O hydrogen bonds (dD···A below ca 2.50 Å) forming a discrete chain represented by the graph set motif D21(4) (Grell et al., 1999). Individual two-dimensional layers close pack along the [010] direction of the unit cell as depicted in Figure 3. We note the absence of strong supramolecular interactions between adjacent layers and only weak C—H···O contacts (not shown) are present.