organic compounds
1,5-Diamino-2,6-dibromo-9,10-anthraquinone
aInstitut für Organische Chemie, TU Bergakademie Freiberg, Leipziger Strasse 29, D-09596 Freiberg/Sachsen, Germany
*Correspondence e-mail: edwin.weber@chemie.tu-freiberg.de
In the title compound, C14H8Br2N2O2, the molecular structure features intramolecular N—H⋯O [2.639 (2) Å and 130°] and N—H⋯Br [3.053 (2) Å and 114°] hydrogen bonding. Due to inversion symmetry, the asymmetric part of the consits of one half-molecule. In the crystal, inversion dimers linked by pairs of N—H⋯O [2.955 (2) Å and 135°] hydrogen bonds occur. The structure also features C=O⋯π [3.228 (2) Å] and Br⋯Br [3.569 (1) Å] contacts.
Related literature
For background information on anthraquinones and their pharmacological potential, see: Thomson (1967); Bohacova et al. (1998). For the X-ray structure of anthraquinone at different temperatures, see: Fu & Brock (1998). For a description of the resonance assisted hydrogen bond (RAHB) model, see: Gilli et al. (1989); Sanz et al. (2008). For structures with typical intramolecular N—H⋯Br, N—H⋯O and C=O⋯π contacts, see: Brammer et al. (2001); Shimpi et al. (2007); Marten et al. (2007). For the synthetic procedure, see: Scholl & Krieger (1904).
Experimental
Crystal data
|
Refinement
|
Data collection: APEX2 (Bruker, 2007); cell SAINT (Bruker, 2007); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).
Supporting information
10.1107/S1600536812004229/im2352sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536812004229/im2352Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536812004229/im2352Isup3.cml
The title compound was synthesized by bromination of 1,5-diaminoanthra-9,10-quinone (1.0 g, 4.20 mmol) with bromine in acetic acid. For the synthetic procedure, see: Scholl & Krieger (1904). Purification by
(silica gel, n-hexane:ethyl acetate/4:1) followed by crystallization from toluene yielded 1.1 g (68%) of the compound as red prismatic crystals.H atoms were positioned geometrically and allowed to ride on their respective parent atoms, with C—H = 0.95 Å and Uiso(H) = 1.2Ueq(C) for aryl and N—H = 0.88 Å and Uiso(H) = 1.2Ueq(N) for amino atoms.
Data collection: APEX2 (Bruker, 2007); cell
SAINT (Bruker, 2007); data reduction: SAINT (Bruker, 2007); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).C14H8Br2N2O2 | Z = 1 |
Mr = 396.04 | F(000) = 192 |
Triclinic, P1 | Dx = 2.102 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 4.4177 (1) Å | Cell parameters from 5166 reflections |
b = 6.2240 (2) Å | θ = 3.2–38.8° |
c = 11.8410 (3) Å | µ = 6.48 mm−1 |
α = 94.455 (2)° | T = 153 K |
β = 99.970 (2)° | Irregular, red |
γ = 100.859 (2)° | 0.58 × 0.22 × 0.05 mm |
V = 312.87 (2) Å3 |
Bruker APEXII CCD area-detector diffractometer | 2003 independent reflections |
Radiation source: fine-focus sealed tube | 1844 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.029 |
ϕ and ω scans | θmax = 31.1°, θmin = 3.4° |
Absorption correction: multi-scan (SADABS; Bruker, 2007) | h = −6→6 |
Tmin = 0.117, Tmax = 0.759 | k = −9→9 |
7769 measured reflections | l = −17→17 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.026 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.071 | H-atom parameters constrained |
S = 0.96 | w = 1/[σ2(Fo2) + (0.0454P)2 + 0.2515P] where P = (Fo2 + 2Fc2)/3 |
2003 reflections | (Δ/σ)max < 0.001 |
91 parameters | Δρmax = 0.86 e Å−3 |
0 restraints | Δρmin = −0.63 e Å−3 |
C14H8Br2N2O2 | γ = 100.859 (2)° |
Mr = 396.04 | V = 312.87 (2) Å3 |
Triclinic, P1 | Z = 1 |
a = 4.4177 (1) Å | Mo Kα radiation |
b = 6.2240 (2) Å | µ = 6.48 mm−1 |
c = 11.8410 (3) Å | T = 153 K |
α = 94.455 (2)° | 0.58 × 0.22 × 0.05 mm |
β = 99.970 (2)° |
Bruker APEXII CCD area-detector diffractometer | 2003 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2007) | 1844 reflections with I > 2σ(I) |
Tmin = 0.117, Tmax = 0.759 | Rint = 0.029 |
7769 measured reflections |
R[F2 > 2σ(F2)] = 0.026 | 0 restraints |
wR(F2) = 0.071 | H-atom parameters constrained |
S = 0.96 | Δρmax = 0.86 e Å−3 |
2003 reflections | Δρmin = −0.63 e Å−3 |
91 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Br1 | 0.18844 (5) | 0.30597 (3) | 0.572710 (15) | 0.02812 (8) | |
O1 | 0.1853 (3) | 0.3189 (2) | 1.04118 (13) | 0.0228 (3) | |
N1 | 0.1114 (4) | 0.3920 (3) | 0.82251 (13) | 0.0197 (3) | |
H1A | 0.0439 | 0.4563 | 0.7622 | 0.024* | |
H1B | 0.0777 | 0.4351 | 0.8910 | 0.024* | |
C1 | 0.3215 (4) | 0.1566 (3) | 0.69978 (14) | 0.0184 (3) | |
C2 | 0.4697 (4) | −0.0157 (3) | 0.68165 (15) | 0.0205 (3) | |
H2 | 0.4972 | −0.0606 | 0.6062 | 0.025* | |
C3 | 0.5785 (4) | −0.1235 (3) | 0.77398 (15) | 0.0188 (3) | |
H3 | 0.6811 | −0.2421 | 0.7618 | 0.023* | |
C4 | 0.5371 (4) | −0.0574 (3) | 0.88430 (14) | 0.0152 (3) | |
C5 | 0.3340 (4) | 0.1755 (3) | 1.02023 (15) | 0.0159 (3) | |
C6 | 0.3806 (4) | 0.1154 (3) | 0.90319 (14) | 0.0145 (3) | |
C7 | 0.2662 (4) | 0.2273 (3) | 0.80995 (14) | 0.0158 (3) |
U11 | U22 | U33 | U12 | U13 | U23 | |
Br1 | 0.04356 (14) | 0.03062 (12) | 0.01527 (11) | 0.01733 (9) | 0.00600 (8) | 0.00918 (7) |
O1 | 0.0304 (7) | 0.0252 (7) | 0.0177 (6) | 0.0166 (5) | 0.0062 (5) | 0.0020 (5) |
N1 | 0.0264 (7) | 0.0191 (7) | 0.0164 (7) | 0.0110 (6) | 0.0032 (5) | 0.0048 (5) |
C1 | 0.0223 (7) | 0.0205 (8) | 0.0132 (7) | 0.0063 (6) | 0.0027 (5) | 0.0042 (6) |
C2 | 0.0257 (8) | 0.0246 (8) | 0.0123 (7) | 0.0074 (6) | 0.0045 (6) | 0.0019 (6) |
C3 | 0.0249 (8) | 0.0185 (7) | 0.0152 (7) | 0.0090 (6) | 0.0050 (6) | 0.0011 (6) |
C4 | 0.0161 (7) | 0.0162 (7) | 0.0138 (7) | 0.0044 (5) | 0.0030 (5) | 0.0012 (5) |
C5 | 0.0167 (7) | 0.0154 (7) | 0.0156 (7) | 0.0041 (5) | 0.0027 (5) | 0.0016 (6) |
C6 | 0.0161 (7) | 0.0150 (7) | 0.0127 (7) | 0.0038 (5) | 0.0026 (5) | 0.0011 (5) |
C7 | 0.0173 (7) | 0.0154 (7) | 0.0150 (7) | 0.0038 (5) | 0.0027 (5) | 0.0019 (5) |
Br1—C1 | 1.8949 (18) | C2—H2 | 0.9500 |
O1—C5 | 1.238 (2) | C3—C4 | 1.392 (2) |
N1—C7 | 1.348 (2) | C3—H3 | 0.9500 |
N1—H1A | 0.8800 | C4—C6 | 1.407 (2) |
N1—H1B | 0.8800 | C5—C6 | 1.467 (2) |
C1—C2 | 1.379 (3) | C5—C4i | 1.485 (2) |
C1—C7 | 1.420 (2) | C6—C7 | 1.421 (2) |
C2—C3 | 1.389 (3) | ||
C7—N1—H1A | 120.0 | C3—C4—C6 | 120.66 (16) |
C7—N1—H1B | 120.0 | C3—C4—C5i | 117.24 (15) |
H1A—N1—H1B | 120.0 | C6—C4—C5i | 122.10 (15) |
C2—C1—C7 | 122.64 (16) | O1—C5—C6 | 121.83 (16) |
C2—C1—Br1 | 118.66 (13) | O1—C5—C4i | 119.18 (16) |
C7—C1—Br1 | 118.69 (13) | C6—C5—C4i | 118.98 (15) |
C1—C2—C3 | 119.84 (16) | C4—C6—C7 | 120.42 (15) |
C1—C2—H2 | 120.1 | C4—C6—C5 | 118.89 (15) |
C3—C2—H2 | 120.1 | C7—C6—C5 | 120.69 (15) |
C2—C3—C4 | 119.87 (16) | N1—C7—C1 | 120.38 (16) |
C2—C3—H3 | 120.1 | N1—C7—C6 | 123.08 (15) |
C4—C3—H3 | 120.1 | C1—C7—C6 | 116.54 (15) |
Br1—Br1—C1—C2 | 0.00 (9) | O1—C5—C6—C4 | −176.53 (16) |
Br1—Br1—C1—C7 | 0.00 (10) | C4i—C5—C6—C4 | 2.1 (2) |
C7—C1—C2—C3 | −1.7 (3) | O1—C5—C6—C7 | 2.6 (2) |
Br1—C1—C2—C3 | 177.95 (14) | C4i—C5—C6—C7 | −178.77 (14) |
C1—C2—C3—C4 | 0.1 (3) | C2—C1—C7—N1 | −177.84 (17) |
C2—C3—C4—C6 | 1.1 (3) | Br1—C1—C7—N1 | 2.5 (2) |
C2—C3—C4—C5i | −178.47 (16) | C2—C1—C7—C6 | 1.9 (2) |
O1—O1—C5—C6 | 0.0 (5) | Br1—C1—C7—C6 | −177.76 (12) |
O1—O1—C5—C4i | 0.0 (6) | C4—C6—C7—N1 | 179.15 (16) |
C3—C4—C6—C7 | −0.9 (2) | C5—C6—C7—N1 | 0.0 (2) |
C5i—C4—C6—C7 | 178.70 (15) | C4—C6—C7—C1 | −0.6 (2) |
C3—C4—C6—C5 | 178.25 (15) | C5—C6—C7—C1 | −179.71 (15) |
C5i—C4—C6—C5 | −2.2 (3) |
Symmetry code: (i) −x+1, −y, −z+2. |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1B···O1 | 0.88 | 1.99 | 2.639 (2) | 130 |
N1—H1A···Br1 | 0.88 | 2.59 | 3.053 (2) | 114 |
N1—H1B···O1ii | 0.88 | 2.27 | 2.955 (2) | 135 |
Symmetry code: (ii) −x, −y+1, −z+2. |
Experimental details
Crystal data | |
Chemical formula | C14H8Br2N2O2 |
Mr | 396.04 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 153 |
a, b, c (Å) | 4.4177 (1), 6.2240 (2), 11.8410 (3) |
α, β, γ (°) | 94.455 (2), 99.970 (2), 100.859 (2) |
V (Å3) | 312.87 (2) |
Z | 1 |
Radiation type | Mo Kα |
µ (mm−1) | 6.48 |
Crystal size (mm) | 0.58 × 0.22 × 0.05 |
Data collection | |
Diffractometer | Bruker APEXII CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2007) |
Tmin, Tmax | 0.117, 0.759 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 7769, 2003, 1844 |
Rint | 0.029 |
(sin θ/λ)max (Å−1) | 0.727 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.026, 0.071, 0.96 |
No. of reflections | 2003 |
No. of parameters | 91 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.86, −0.63 |
Computer programs: APEX2 (Bruker, 2007), SAINT (Bruker, 2007), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 (Farrugia, 1997), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1B···O1 | 0.88 | 1.99 | 2.639 (2) | 129.8 |
N1—H1A···Br1 | 0.88 | 2.59 | 3.053 (2) | 113.7 |
N1—H1B···O1i | 0.88 | 2.27 | 2.955 (2) | 134.9 |
Symmetry code: (i) −x, −y+1, −z+2. |
Acknowledgements
This work was performed within the Cluster of Excellence `Structure Design of Novel High-Performance Materials via Atomic Design and Defect Engineering (ADDE)', which is financially supported by the European Union (European Regional Development Fund) and by the Ministry of Science and Art of Saxony (SMWK).
References
Bohacova, Y., Docolomansky, P., Breier, A., Gemeiner, P. & Zihelhofer, A. (1998). J. Chromatogr. B, 715, 273–281. CAS Google Scholar
Brammer, L., Bruton, E. A. & Sherwood, P. (2001). Cryst. Growth Des. 1, 277–290. Web of Science CrossRef CAS Google Scholar
Bruker (2007). APEX2, SAINT and SADABS. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Farrugia, L. J. (1997). J. Appl. Cryst. 30, 565. CrossRef IUCr Journals Google Scholar
Fu, Y. & Brock, C. P. (1998). Acta Cryst. B54, 308–315. Web of Science CSD CrossRef CAS IUCr Journals Google Scholar
Gilli, G., Bellucci, F., Ferretti, V. & Bertolasi, V. (1989). J. Am. Chem. Soc. 111, 1023–1028. CrossRef CAS Web of Science Google Scholar
Marten, J., Seichter, W., Weber, E. & Böhme, U. (2007). J. Phys. Org. Chem. 20, 716–731. Web of Science CSD CrossRef CAS Google Scholar
Sanz, P., Mó, O., Yánez, M. & Elguero, J. (2008). Chem. Eur. J. 14, 4225–4232. Web of Science CrossRef PubMed CAS Google Scholar
Scholl, R. & Krieger, A. (1904). Ber. Dtsch Chem. Ges. 37, 4681–4692. CrossRef CAS Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Shimpi, M. R., Lekshmi, N. S. & Pedireddi, V. R. (2007). Cryst. Growth Des. 7, 1958–1963. Web of Science CSD CrossRef CAS Google Scholar
Thomson, R. H. (1967). In Naturally Occurring Quinones. London: Academic Press. Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Anthraquinones represent the most important group of natural quinones (Thomson, 1967). They also find extensive application in chemical research and industry including aspects of pharmacology (Bohacova et al., 1998). The title compound crystallizes in the triclinic space group P1 with one half of the molecule in the asymmetric unit of the unit cell, i.e. the molecule adopts inversion symmetry. The anthraquinone part shows an almost planar geometry except for the bromo atoms which are slightly twisted out of the plane (Cg(1)—C(1)—Br(1) 178.0 (2) °). Compared with the unsubstituted anthraquinone, the position of atoms shows distinct differences. The C—C bond lengths [C(6)—C(7) 1.421 (2) Å, C(1)—C(7) 1.420 (2) Å] are considerably elongated compared with 1.393 (2) Å, 1.381 (2) Å for anthraquinone. On the other hand, the angle of C(6)—C(7)—C(1) 116.5 (2) ° is significantly reduced compared with 120.39 (14) ° for anthraquinone (Fu & Brock, 1998). This can be explained by the so called 'resonance assisted hydrogen bond (RAHB) model', which is based on the assumption of a synergistic mutual reinforcement of intramolecular hydrogen bonding due to the conjugation of π electrons (Gilli et al., 1989). In our case, the amino group of the molecule seems to be involved in an intramolecular hydrogen bond of this type [N1—H1B···O1 2.639 (2) Å, 130 °]. However, this particular conception is also disputed (Sanz et al., 2008). The amino group is also involved in an intramolecular N—H···Br contact [N1—H1A···Br1 3.053 (2) Å, 114 °] (Brammer et al., 2001). In addition, intermolecular hydrogen bonds of the N—H···O type are found [N1—H1B···O1 2.955 (3) Å, 135 °]. In with way tapes are generated, which are further cross-linked by Br···Br-contacts [Br···Br 3.569 (1) Å, 155.8 (1) °] (Shimpi et al., 2007). The resulting two-dimensional networks are stacked via C═O···π interactions [C(5)···Cg(2) 3.228 (2) Å, 97.28 (13) °] (Marten et al., 2007).