organic compounds
3,3′-[1,4-Phenylenebis(methylene)]bis(1-propylbenzimidazolium) dichloride dihydrate
aSchool of Chemical Sciences, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia, bDepartment of Chemistry, College of Education Samarra, University of Tikrit, Tikrit 43001, Iraq, and cX-ray Crystallography Unit, School of Physics, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia
*Correspondence e-mail: hkfun@usm.my
The 28H32N42+·2Cl−·2H2O, contains half of a 3,3′-[1,4-phenylenebis(methylene)]bis(1-propylbenzimidazolium) cation, one chloride anion and one water molecule. The complete cation is generated by a crystallographic inversion center. The central benzene ring forms a dihedral angle of 66.06 (11)° with its adjacent benzimidazolium ring system. In the crystal, the cations, anions and water molecules are linked by O—H⋯Cl, C—H⋯O and C—H⋯Cl hydrogen bonds into a three-dimensional network. The crystal packing is further stabilized by π–π interactions, with centroid–centroid distances of 3.5561 (15) and 3.6708 (15) Å.
of the title compound, CRelated literature
For details and applications of benzimidazole derivatives, see: Narasimhan et al. (2012). For related structures, see: Haque et al. (2011, 2012); Iqbal et al. (2012). For reference bond lengths, see: Allen et al. (1987). For the stability of the temperature controller used for data collection, see: Cosier & Glazer (1986).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2009); cell SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009).
Supporting information
10.1107/S1600536812007738/is5076sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536812007738/is5076Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536812007738/is5076Isup3.cml
A mixture of benzimidazole (2.95 g, 25 mmol) and finely ground potassium hydroxide (2.36 g, 30 mmol) in 30 ml of DMSO was stirred at room temperature (27–28 °C) for 30 min. 1-Bromopropane (2.27 ml, 25 mmol) was added drop-wise into this consistently stirred mixture with further stirring for 2 h at the same temperature. The mixture was then poured into water (400 ml) and was extracted by chloroform (5 x 20 ml). The extract was dried by magnesium sulfate and evaporated under reduced pressure to get N-ethylbenzimidazole (1) as a thick yellowish fluid. Furthermore, a mixture of 1 (1.60 g, 10 mmol) and 1,4-bis(chloromethyl)benzene (0.88 g, 5 mmol) in dioxane (30 ml) was refluxed at 100 °C for 18 h. This desired compound (2.2Cl) appeared as white precipitates in the light brown solution. The mixture was filtered and the precipitates were washed with fresh dioxane (3 × 5 ml), dried at room temperature for 24 h, and the soft lumps obtained were ground into a fine powder (2.15 g, 87%).
of 2.2Cl in methanol (0.5 ml) was exposed to diethyl ether vapours (vapour diffusion) at room temperature overnight to get single crystals suitable for X-ray diffraction study.Atoms H1W1 and H2W1 were located in a difference Fourier map and refined freely. The remaining H atoms were positioned geometrically [C—H = 0.95, 0.98 or 0.99 Å] and refined using a riding model with Uiso(H) = 1.2 or 1.5Ueq(C). A rotating group model was applied to the methyl group.
Data collection: APEX2 (Bruker, 2009); cell
SAINT (Bruker, 2009); data reduction: SAINT (Bruker, 2009); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).Fig. 1. The molecular structure of the title compound with atom labels and 50% probability displacement ellipsoids. Atoms with suffix A were generated by symmetry code -x, -y + 2, -z. | |
Fig. 2. The crystal packing of the title compound. Intermolecular hydrogen bonds are shown as dashed lines. H atoms not involved in the hydrogen bonds have been omitted for clarity. |
C28H32N42+·2Cl−·2H2O | F(000) = 564 |
Mr = 531.51 | Dx = 1.305 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 5809 reflections |
a = 8.1177 (5) Å | θ = 2.5–32.5° |
b = 9.1042 (5) Å | µ = 0.27 mm−1 |
c = 18.3548 (11) Å | T = 100 K |
β = 94.323 (2)° | Block, colourless |
V = 1352.66 (14) Å3 | 0.47 × 0.23 × 0.14 mm |
Z = 2 |
Bruker SMART APEXII CCD area-detector diffractometer | 3085 independent reflections |
Radiation source: fine-focus sealed tube | 2660 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.053 |
ϕ and ω scans | θmax = 27.5°, θmin = 2.2° |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | h = −10→10 |
Tmin = 0.882, Tmax = 0.962 | k = −11→11 |
11942 measured reflections | l = −22→23 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.061 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.196 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.08 | w = 1/[σ2(Fo2) + (0.1065P)2 + 2.1866P] where P = (Fo2 + 2Fc2)/3 |
3085 reflections | (Δ/σ)max < 0.001 |
172 parameters | Δρmax = 0.86 e Å−3 |
0 restraints | Δρmin = −0.48 e Å−3 |
C28H32N42+·2Cl−·2H2O | V = 1352.66 (14) Å3 |
Mr = 531.51 | Z = 2 |
Monoclinic, P21/c | Mo Kα radiation |
a = 8.1177 (5) Å | µ = 0.27 mm−1 |
b = 9.1042 (5) Å | T = 100 K |
c = 18.3548 (11) Å | 0.47 × 0.23 × 0.14 mm |
β = 94.323 (2)° |
Bruker SMART APEXII CCD area-detector diffractometer | 3085 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | 2660 reflections with I > 2σ(I) |
Tmin = 0.882, Tmax = 0.962 | Rint = 0.053 |
11942 measured reflections |
R[F2 > 2σ(F2)] = 0.061 | 0 restraints |
wR(F2) = 0.196 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.08 | Δρmax = 0.86 e Å−3 |
3085 reflections | Δρmin = −0.48 e Å−3 |
172 parameters |
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Cl1 | 0.45230 (8) | 0.59270 (7) | 0.33489 (4) | 0.0240 (2) | |
O1W | 0.3206 (3) | 0.8654 (3) | 0.23712 (12) | 0.0269 (5) | |
N1 | 0.2941 (3) | 0.6933 (2) | 0.04689 (12) | 0.0175 (5) | |
N2 | 0.2605 (3) | 0.4951 (2) | 0.11124 (12) | 0.0179 (5) | |
C1 | 0.0921 (3) | 0.9600 (3) | −0.05784 (15) | 0.0201 (5) | |
H1A | 0.1549 | 0.9329 | −0.0974 | 0.024* | |
C2 | 0.1507 (3) | 0.9274 (3) | 0.01358 (15) | 0.0175 (5) | |
C3 | 0.0581 (3) | 0.9677 (3) | 0.07154 (15) | 0.0201 (5) | |
H3A | 0.0977 | 0.9458 | 0.1203 | 0.024* | |
C4 | 0.3152 (3) | 0.8500 (3) | 0.02876 (15) | 0.0206 (5) | |
H4A | 0.3796 | 0.8579 | −0.0148 | 0.025* | |
H4B | 0.3786 | 0.8994 | 0.0699 | 0.025* | |
C5 | 0.2927 (3) | 0.5759 (3) | −0.00194 (15) | 0.0170 (5) | |
C6 | 0.3152 (3) | 0.5696 (3) | −0.07626 (15) | 0.0194 (5) | |
H6A | 0.3306 | 0.6557 | −0.1042 | 0.023* | |
C7 | 0.3140 (3) | 0.4312 (3) | −0.10732 (15) | 0.0199 (5) | |
H7A | 0.3285 | 0.4223 | −0.1580 | 0.024* | |
C8 | 0.2918 (3) | 0.3032 (3) | −0.06619 (15) | 0.0206 (5) | |
H8A | 0.2917 | 0.2104 | −0.0898 | 0.025* | |
C9 | 0.2701 (3) | 0.3095 (3) | 0.00817 (15) | 0.0199 (5) | |
H9A | 0.2553 | 0.2235 | 0.0362 | 0.024* | |
C10 | 0.2715 (3) | 0.4492 (3) | 0.03924 (14) | 0.0172 (5) | |
C11 | 0.2750 (3) | 0.6401 (3) | 0.11360 (15) | 0.0197 (5) | |
H11A | 0.2722 | 0.6979 | 0.1566 | 0.024* | |
C12 | 0.2412 (3) | 0.3977 (3) | 0.17406 (14) | 0.0197 (5) | |
H12A | 0.2731 | 0.4515 | 0.2198 | 0.024* | |
H12B | 0.3164 | 0.3125 | 0.1713 | 0.024* | |
C13 | 0.0641 (3) | 0.3427 (3) | 0.17592 (14) | 0.0208 (5) | |
H13A | 0.0267 | 0.3006 | 0.1278 | 0.025* | |
H13B | −0.0093 | 0.4262 | 0.1856 | 0.025* | |
C14 | 0.0517 (4) | 0.2262 (3) | 0.23502 (16) | 0.0276 (6) | |
H14A | −0.0607 | 0.1865 | 0.2324 | 0.041* | |
H14B | 0.0779 | 0.2705 | 0.2832 | 0.041* | |
H14C | 0.1301 | 0.1468 | 0.2274 | 0.041* | |
H1W1 | 0.377 (6) | 0.792 (5) | 0.264 (2) | 0.050 (12)* | |
H2W1 | 0.392 (6) | 0.920 (5) | 0.220 (2) | 0.046 (12)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cl1 | 0.0237 (4) | 0.0186 (4) | 0.0300 (4) | −0.0012 (2) | 0.0043 (3) | −0.0029 (2) |
O1W | 0.0269 (11) | 0.0265 (12) | 0.0276 (11) | −0.0050 (9) | 0.0037 (8) | −0.0007 (9) |
N1 | 0.0159 (10) | 0.0109 (10) | 0.0254 (11) | 0.0014 (8) | 0.0009 (8) | −0.0022 (8) |
N2 | 0.0163 (10) | 0.0152 (11) | 0.0219 (11) | 0.0002 (8) | 0.0001 (8) | −0.0025 (8) |
C1 | 0.0189 (12) | 0.0129 (12) | 0.0289 (14) | −0.0010 (9) | 0.0052 (10) | −0.0004 (10) |
C2 | 0.0162 (11) | 0.0066 (11) | 0.0300 (14) | −0.0004 (8) | 0.0041 (9) | −0.0003 (9) |
C3 | 0.0210 (12) | 0.0111 (12) | 0.0281 (13) | −0.0007 (9) | 0.0024 (10) | −0.0003 (10) |
C4 | 0.0173 (12) | 0.0119 (12) | 0.0328 (14) | 0.0002 (9) | 0.0032 (10) | 0.0003 (10) |
C5 | 0.0116 (11) | 0.0110 (12) | 0.0280 (13) | 0.0000 (8) | −0.0012 (9) | −0.0017 (9) |
C6 | 0.0154 (12) | 0.0143 (12) | 0.0281 (14) | −0.0004 (9) | −0.0010 (9) | 0.0032 (10) |
C7 | 0.0184 (12) | 0.0169 (13) | 0.0242 (13) | −0.0016 (9) | −0.0004 (9) | −0.0020 (10) |
C8 | 0.0204 (12) | 0.0159 (13) | 0.0251 (13) | −0.0017 (10) | −0.0010 (9) | −0.0038 (10) |
C9 | 0.0171 (11) | 0.0124 (12) | 0.0301 (14) | −0.0004 (9) | 0.0013 (9) | 0.0013 (10) |
C10 | 0.0122 (11) | 0.0168 (13) | 0.0224 (13) | 0.0013 (9) | −0.0010 (9) | −0.0009 (10) |
C11 | 0.0142 (11) | 0.0191 (13) | 0.0257 (13) | 0.0028 (9) | 0.0001 (9) | −0.0029 (10) |
C12 | 0.0186 (12) | 0.0179 (13) | 0.0223 (13) | 0.0027 (9) | −0.0013 (9) | 0.0042 (10) |
C13 | 0.0175 (12) | 0.0221 (14) | 0.0227 (13) | 0.0023 (10) | 0.0017 (9) | −0.0001 (10) |
C14 | 0.0257 (14) | 0.0284 (16) | 0.0291 (15) | 0.0031 (11) | 0.0054 (11) | 0.0054 (12) |
O1W—H1W1 | 0.93 (5) | C6—C7 | 1.382 (4) |
O1W—H2W1 | 0.84 (5) | C6—H6A | 0.9500 |
N1—C11 | 1.337 (3) | C7—C8 | 1.407 (4) |
N1—C5 | 1.395 (3) | C7—H7A | 0.9500 |
N1—C4 | 1.478 (3) | C8—C9 | 1.390 (4) |
N2—C11 | 1.326 (4) | C8—H8A | 0.9500 |
N2—C10 | 1.395 (3) | C9—C10 | 1.393 (4) |
N2—C12 | 1.472 (3) | C9—H9A | 0.9500 |
C1—C3i | 1.392 (4) | C11—H11A | 0.9500 |
C1—C2 | 1.393 (4) | C12—C13 | 1.526 (4) |
C1—H1A | 0.9500 | C12—H12A | 0.9900 |
C2—C3 | 1.397 (4) | C12—H12B | 0.9900 |
C2—C4 | 1.517 (3) | C13—C14 | 1.526 (4) |
C3—C1i | 1.392 (4) | C13—H13A | 0.9900 |
C3—H3A | 0.9500 | C13—H13B | 0.9900 |
C4—H4A | 0.9900 | C14—H14A | 0.9800 |
C4—H4B | 0.9900 | C14—H14B | 0.9800 |
C5—C6 | 1.391 (4) | C14—H14C | 0.9800 |
C5—C10 | 1.397 (4) | ||
H1W1—O1W—H2W1 | 107 (4) | C9—C8—C7 | 121.6 (2) |
C11—N1—C5 | 108.4 (2) | C9—C8—H8A | 119.2 |
C11—N1—C4 | 125.4 (2) | C7—C8—H8A | 119.2 |
C5—N1—C4 | 126.2 (2) | C8—C9—C10 | 116.2 (2) |
C11—N2—C10 | 108.5 (2) | C8—C9—H9A | 121.9 |
C11—N2—C12 | 126.1 (2) | C10—C9—H9A | 121.9 |
C10—N2—C12 | 125.4 (2) | C9—C10—N2 | 131.5 (2) |
C3i—C1—C2 | 120.2 (2) | C9—C10—C5 | 122.0 (2) |
C3i—C1—H1A | 119.9 | N2—C10—C5 | 106.5 (2) |
C2—C1—H1A | 119.9 | N2—C11—N1 | 110.3 (2) |
C1—C2—C3 | 119.7 (2) | N2—C11—H11A | 124.8 |
C1—C2—C4 | 120.4 (2) | N1—C11—H11A | 124.8 |
C3—C2—C4 | 119.9 (2) | N2—C12—C13 | 111.8 (2) |
C1i—C3—C2 | 120.1 (3) | N2—C12—H12A | 109.3 |
C1i—C3—H3A | 120.0 | C13—C12—H12A | 109.3 |
C2—C3—H3A | 120.0 | N2—C12—H12B | 109.3 |
N1—C4—C2 | 112.0 (2) | C13—C12—H12B | 109.3 |
N1—C4—H4A | 109.2 | H12A—C12—H12B | 107.9 |
C2—C4—H4A | 109.2 | C12—C13—C14 | 110.9 (2) |
N1—C4—H4B | 109.2 | C12—C13—H13A | 109.5 |
C2—C4—H4B | 109.2 | C14—C13—H13A | 109.5 |
H4A—C4—H4B | 107.9 | C12—C13—H13B | 109.5 |
C6—C5—N1 | 131.8 (2) | C14—C13—H13B | 109.5 |
C6—C5—C10 | 121.8 (2) | H13A—C13—H13B | 108.1 |
N1—C5—C10 | 106.3 (2) | C13—C14—H14A | 109.5 |
C7—C6—C5 | 116.4 (2) | C13—C14—H14B | 109.5 |
C7—C6—H6A | 121.8 | H14A—C14—H14B | 109.5 |
C5—C6—H6A | 121.8 | C13—C14—H14C | 109.5 |
C6—C7—C8 | 122.0 (2) | H14A—C14—H14C | 109.5 |
C6—C7—H7A | 119.0 | H14B—C14—H14C | 109.5 |
C8—C7—H7A | 119.0 | ||
C3i—C1—C2—C3 | −0.1 (4) | C8—C9—C10—N2 | −177.0 (2) |
C3i—C1—C2—C4 | −179.4 (2) | C8—C9—C10—C5 | 0.2 (4) |
C1—C2—C3—C1i | 0.1 (4) | C11—N2—C10—C9 | 177.2 (3) |
C4—C2—C3—C1i | 179.4 (2) | C12—N2—C10—C9 | −1.1 (4) |
C11—N1—C4—C2 | −86.9 (3) | C11—N2—C10—C5 | −0.3 (3) |
C5—N1—C4—C2 | 94.0 (3) | C12—N2—C10—C5 | −178.6 (2) |
C1—C2—C4—N1 | −103.9 (3) | C6—C5—C10—C9 | −0.6 (4) |
C3—C2—C4—N1 | 76.9 (3) | N1—C5—C10—C9 | −177.7 (2) |
C11—N1—C5—C6 | −176.6 (3) | C6—C5—C10—N2 | 177.2 (2) |
C4—N1—C5—C6 | 2.6 (4) | N1—C5—C10—N2 | 0.1 (3) |
C11—N1—C5—C10 | 0.1 (3) | C10—N2—C11—N1 | 0.3 (3) |
C4—N1—C5—C10 | 179.3 (2) | C12—N2—C11—N1 | 178.6 (2) |
N1—C5—C6—C7 | 176.8 (2) | C5—N1—C11—N2 | −0.3 (3) |
C10—C5—C6—C7 | 0.6 (4) | C4—N1—C11—N2 | −179.5 (2) |
C5—C6—C7—C8 | −0.2 (4) | C11—N2—C12—C13 | 104.6 (3) |
C6—C7—C8—C9 | −0.1 (4) | C10—N2—C12—C13 | −77.4 (3) |
C7—C8—C9—C10 | 0.1 (4) | N2—C12—C13—C14 | 172.3 (2) |
Symmetry code: (i) −x, −y+2, −z. |
D—H···A | D—H | H···A | D···A | D—H···A |
O1W—H1W1···Cl1 | 0.93 (4) | 2.29 (4) | 3.200 (3) | 166 (4) |
O1W—H2W1···Cl1ii | 0.84 (5) | 2.30 (4) | 3.130 (3) | 170 (4) |
C1—H1A···Cl1iii | 0.95 | 2.81 | 3.677 (3) | 153 |
C4—H4B···Cl1ii | 0.99 | 2.77 | 3.741 (3) | 167 |
C6—H6A···Cl1iii | 0.95 | 2.76 | 3.691 (3) | 165 |
C11—H11A···O1W | 0.95 | 2.14 | 3.059 (4) | 163 |
C12—H12A···Cl1 | 0.99 | 2.79 | 3.747 (3) | 164 |
C12—H12B···Cl1iv | 0.99 | 2.75 | 3.740 (3) | 175 |
Symmetry codes: (ii) −x+1, y+1/2, −z+1/2; (iii) x, −y+3/2, z−1/2; (iv) −x+1, y−1/2, −z+1/2. |
Experimental details
Crystal data | |
Chemical formula | C28H32N42+·2Cl−·2H2O |
Mr | 531.51 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 100 |
a, b, c (Å) | 8.1177 (5), 9.1042 (5), 18.3548 (11) |
β (°) | 94.323 (2) |
V (Å3) | 1352.66 (14) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.27 |
Crystal size (mm) | 0.47 × 0.23 × 0.14 |
Data collection | |
Diffractometer | Bruker SMART APEXII CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2009) |
Tmin, Tmax | 0.882, 0.962 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 11942, 3085, 2660 |
Rint | 0.053 |
(sin θ/λ)max (Å−1) | 0.650 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.061, 0.196, 1.08 |
No. of reflections | 3085 |
No. of parameters | 172 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.86, −0.48 |
Computer programs: APEX2 (Bruker, 2009), SAINT (Bruker, 2009), SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
O1W—H1W1···Cl1 | 0.93 (4) | 2.29 (4) | 3.200 (3) | 166 (4) |
O1W—H2W1···Cl1i | 0.84 (5) | 2.30 (4) | 3.130 (3) | 170 (4) |
C1—H1A···Cl1ii | 0.95 | 2.81 | 3.677 (3) | 153 |
C4—H4B···Cl1i | 0.99 | 2.77 | 3.741 (3) | 167 |
C6—H6A···Cl1ii | 0.95 | 2.76 | 3.691 (3) | 165 |
C11—H11A···O1W | 0.95 | 2.14 | 3.059 (4) | 163 |
C12—H12A···Cl1 | 0.99 | 2.79 | 3.747 (3) | 164 |
C12—H12B···Cl1iii | 0.99 | 2.75 | 3.740 (3) | 175 |
Symmetry codes: (i) −x+1, y+1/2, −z+1/2; (ii) x, −y+3/2, z−1/2; (iii) −x+1, y−1/2, −z+1/2. |
Footnotes
‡Thomson Reuters ResearcherID: A-3561-2009.
Acknowledgements
RAH thanks Universiti Sains Malaysia (USM) for the Research University (RU) grants Nos. 1001/PKIMIA/811157 and 1001/PKIMIA/823082. MAI is grateful to (IPS) USM for financial support [fellowship USM.IPS/JWT/1/19 (JLD 6)] and a research attachment fund [P-KM0018/10(R) − 308/AIPS/415401]. HKF and TSC thank USM for the RU grant No. 1001/PFIZIK/811160. TSC thanks the Malaysian Government and USM for the award of the post of Research Officer under the RU grant No. 1001/PSKBP/8630013.
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Benzimidazole constituted compounds have diverse biological and clinical applications (Narasimhan et al., 2012). Previously, we have reported crystal structures of ortho-xylyl linked bis-benzimidazolium salts with heptyl (Haque et al., 2011), propyl (Iqbal et al., 2012), and ethyl (Haque et al., 2012) substitutions. In this report, we describe the crystal structure of a para-xylyl linked bis-benzimidazolium salt with propyl substitutions.
The molecular structure of the title compound is shown in Fig. 1. The asymmetric unit of the title compound, C28H32N42+.2Cl-.2H2O, consists of one half-molecule of 3,3'-[1,4-phenylenebis(methylene)]bis(1-propyl-benzimidazolium) cation, one chlorine anion and one water molecule. The complete cation is generated by a crystallographic inversion center (-x, -y + 2, -z). The central benzene ring (C1–C3/C1A–C3A) forms a dihedral angle of 66.06 (11)° with its adjacent benzimidazolium ring (N1/N2/C5–C11) [maximum deviation = 0.031 (2) Å at atom C5]. Bond lengths (Allen et al., 1987) and angles are within normal ranges and are comparable to related structures (Haque et al., 2011,2012; Iqbal et al., 2012).
In the crystal structure, (Fig. 2), the cations, anions and water molecules are linked by intermolecular O1W—H1W1···Cl1, O1W—H2W1···Cl1, C1—H1A···Cl1, C4—H4B···Cl1, C6—H6A···Cl1, C11—H11A···O1W, C12—H12A···Cl1, and C12—H12B···Cl1 hydrogen bonds (Table 1) into a three-dimensional network. The crystal packing is further stabilized by π–π interactions with Cg1···Cg3 (1-x, 1-y, -z) distance = 3.5561 (15) Å and Cg3···Cg3 (1-x, 1-y, -z) distance = 3.6708 (15) Å, where Cg1 and Cg3 are the centroids of N1/N2/C5/C10/C11 and C5–C10 rings, respectively.