metal-organic compounds
{μ-2-[4-(Benzothiazol-2-yl)benzyl]-2-azapropane-1,3-dithiolato-1:2κ4S,S′:S,S′}bis[tricarbonyliron(I)]
aSchool of Materials Science and Engineering, Changchun University of Science and Technology, No. 7989, Weixing Road, Changchun 130022, People's Republic of China
*Correspondence e-mail: cust_gaoshang@yahoo.cn
The title compound, [Fe2(C16H14N2S3)(CO)6], was prepared as the biomimetic model for the active site of iron-only hydrogenase. The structure is similar to the diiron subsite of the iron-only hydrogenase active site, and contains a diiron-azadithiolate moiety in which a boat six-membered ring is fused with a chair six-membered ring. The substituted benzyl group attached to the bridging N atom resides in an equatorial position. The sum of the C—N—C angles around this N atom [331.9 (12)°] indicates sp3 hybridization.
Related literature
For general background, see: Cammack (1999); Evans & Pickett (2003); Peters et al. (1998); Nicolet et al. (1999). For the of the natural enzyme, see: Nicolet et al. (2000); Frey (2002). For enzyme synthetic models, see: Felton et al. (2009); Tard & Pickett (2009).
Experimental
Crystal data
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Refinement
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Data collection: SMART (Bruker, 1997); cell SAINT-Plus (Bruker, 2001); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.
Supporting information
10.1107/S1600536812006861/lr2050sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536812006861/lr2050Isup2.hkl
All reactions and operations related to the title compound were carried out under a dry, prepurified nitrogen atmosphere with standard Schlenk techniques. All solvents were dried and distilled prior to use according to standard methods. N,N'-bis(hydroxymethyl)-(4-benzothiazole)-benzylamine (2.25 g, 7.5 mmol), prepared from 4-benzothiazole-benzylamine and HCHO-H2O, was added to a degassed THF solution (30 ml) of (µ-HS)2Fe2(CO)6, freshly derived from (µ-S2)Fe2(CO)6 (1.38 g, 4 mmol), reacted with LiEt3BH (1 M solution in THF, 8 ml, 8 mmol) and F3CCO2H (0.6 ml, 8 mmol) at 195 K. The reaction mixture was stirred for 1 h at 195 K, and allowed to warm up to room temperature. The solvent was removed in vacuo and the resulting red solid was purified by
(silica, 20% dichlorometnane in hexane as eluent). The title compound was obtained in 72% yield (1.77 g). Recrystallization in the CH2Cl2/hexane solution afforded crystals suitable for X-ray study.The H atoms attached to C were placed in geometrically calculated positions (C—H = 0.93–0.97 Å) and refined as riding, with Uiso(H) = 1.2Ueq(C).
Data collection: SMART (Bruker, 1997); cell
SAINT-Plus (Bruker, 2001); data reduction: SAINT-Plus (Bruker, 2001); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).Fig. 1. The molecular structure of the title compound, with displacement ellipsoids drawn at 30% probability level. |
[Fe2(C16H14N2S3)(CO)6] | F(000) = 1232 |
Mr = 610.23 | Dx = 1.659 Mg m−3 |
Orthorhombic, P212121 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2ac 2ab | Cell parameters from 8061 reflections |
a = 6.651 (3) Å | θ = 2.8–23.5° |
b = 14.208 (7) Å | µ = 1.49 mm−1 |
c = 25.854 (12) Å | T = 273 K |
V = 2443.2 (19) Å3 | Needle, red |
Z = 4 | 0.25 × 0.08 × 0.07 mm |
Bruker SMART CCD area-detector diffractometer | 3991 independent reflections |
Radiation source: fine-focus sealed tube | 3434 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.030 |
phi and ω scans | θmax = 24.5°, θmin = 2.1° |
Absorption correction: multi-scan (SADABS; Bruker, 1997) | h = −7→7 |
Tmin = 0.332, Tmax = 0.905 | k = −15→16 |
11654 measured reflections | l = −22→30 |
Refinement on F2 | 0 restraints |
Least-squares matrix: full | H-atom parameters constrained |
R[F2 > 2σ(F2)] = 0.027 | w = 1/[σ2(Fo2) + (0.0229P)2] where P = (Fo2 + 2Fc2)/3 |
wR(F2) = 0.052 | (Δ/σ)max = 0.002 |
S = 0.98 | Δρmax = 0.22 e Å−3 |
3991 reflections | Δρmin = −0.16 e Å−3 |
316 parameters |
[Fe2(C16H14N2S3)(CO)6] | V = 2443.2 (19) Å3 |
Mr = 610.23 | Z = 4 |
Orthorhombic, P212121 | Mo Kα radiation |
a = 6.651 (3) Å | µ = 1.49 mm−1 |
b = 14.208 (7) Å | T = 273 K |
c = 25.854 (12) Å | 0.25 × 0.08 × 0.07 mm |
Bruker SMART CCD area-detector diffractometer | 3991 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 1997) | 3434 reflections with I > 2σ(I) |
Tmin = 0.332, Tmax = 0.905 | Rint = 0.030 |
11654 measured reflections |
R[F2 > 2σ(F2)] = 0.027 | 0 restraints |
wR(F2) = 0.052 | H-atom parameters constrained |
S = 0.98 | Δρmax = 0.22 e Å−3 |
3991 reflections | Δρmin = −0.16 e Å−3 |
316 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Fe1 | 0.16578 (7) | 0.28420 (3) | 0.813925 (15) | 0.04281 (12) | |
Fe2 | 0.16580 (7) | 0.44576 (3) | 0.775496 (16) | 0.04460 (12) | |
S1 | −0.00452 (12) | 0.32359 (6) | 0.74198 (3) | 0.04209 (19) | |
S2 | 0.43111 (11) | 0.34726 (5) | 0.77264 (3) | 0.0433 (2) | |
S3 | 1.14717 (17) | 0.58001 (6) | 0.54946 (3) | 0.0657 (3) | |
N2 | 1.2033 (4) | 0.42166 (17) | 0.50317 (9) | 0.0503 (7) | |
C22 | 1.3625 (5) | 0.4801 (2) | 0.48913 (12) | 0.0512 (8) | |
N1 | 0.3099 (4) | 0.32042 (16) | 0.67095 (8) | 0.0379 (6) | |
O2 | −0.2259 (4) | 0.26309 (18) | 0.86511 (9) | 0.0650 (7) | |
C15 | 0.6908 (5) | 0.2851 (2) | 0.56797 (10) | 0.0424 (7) | |
H15A | 0.6649 | 0.2220 | 0.5612 | 0.051* | |
C14 | 0.8577 (5) | 0.3269 (2) | 0.54661 (10) | 0.0445 (7) | |
H14A | 0.9419 | 0.2920 | 0.5252 | 0.053* | |
C17 | 1.3569 (6) | 0.5691 (2) | 0.51091 (12) | 0.0553 (8) | |
C8 | 0.4569 (4) | 0.2927 (2) | 0.70916 (10) | 0.0446 (8) | |
H8A | 0.5896 | 0.3074 | 0.6958 | 0.053* | |
H8B | 0.4496 | 0.2250 | 0.7134 | 0.053* | |
C9 | 0.3716 (5) | 0.2892 (2) | 0.61904 (10) | 0.0452 (8) | |
H9A | 0.2633 | 0.3024 | 0.5950 | 0.054* | |
H9B | 0.3912 | 0.2216 | 0.6197 | 0.054* | |
C2 | −0.0731 (6) | 0.2714 (2) | 0.84573 (12) | 0.0484 (8) | |
C10 | 0.5610 (5) | 0.3349 (2) | 0.59923 (10) | 0.0400 (7) | |
C7 | 0.1125 (4) | 0.2830 (2) | 0.68263 (11) | 0.0452 (7) | |
H7A | 0.1228 | 0.2150 | 0.6842 | 0.054* | |
H7B | 0.0237 | 0.2982 | 0.6541 | 0.054* | |
C16 | 1.0824 (5) | 0.4642 (2) | 0.53409 (12) | 0.0456 (8) | |
C11 | 0.6024 (5) | 0.4287 (2) | 0.60916 (12) | 0.0519 (9) | |
H11A | 0.5162 | 0.4639 | 0.6299 | 0.062* | |
C13 | 0.9016 (4) | 0.4206 (2) | 0.55675 (11) | 0.0420 (8) | |
C12 | 0.7718 (6) | 0.4699 (2) | 0.58827 (12) | 0.0543 (10) | |
H12A | 0.7992 | 0.5326 | 0.5957 | 0.065* | |
O1 | 0.2794 (4) | 0.08728 (18) | 0.80003 (10) | 0.0844 (9) | |
C20 | 1.6675 (7) | 0.5202 (3) | 0.44691 (14) | 0.0793 (12) | |
H20A | 1.7743 | 0.5041 | 0.4254 | 0.095* | |
C1 | 0.2304 (5) | 0.1636 (3) | 0.80624 (12) | 0.0552 (9) | |
C18 | 1.5090 (6) | 0.6342 (3) | 0.50075 (15) | 0.0742 (11) | |
H18A | 1.5064 | 0.6939 | 0.5155 | 0.089* | |
C19 | 1.6602 (7) | 0.6080 (3) | 0.46892 (16) | 0.0804 (12) | |
H19A | 1.7623 | 0.6508 | 0.4617 | 0.096* | |
C21 | 1.5182 (6) | 0.4561 (3) | 0.45645 (14) | 0.0680 (10) | |
H21A | 1.5217 | 0.3969 | 0.4410 | 0.082* | |
O6 | −0.2147 (4) | 0.52106 (18) | 0.81418 (11) | 0.0758 (8) | |
O5 | 0.2323 (5) | 0.56723 (19) | 0.68549 (12) | 0.1013 (11) | |
C6 | 0.2071 (5) | 0.5196 (2) | 0.72024 (16) | 0.0636 (10) | |
O4 | 0.3651 (4) | 0.3247 (2) | 0.91230 (9) | 0.0943 (9) | |
O3 | 0.3659 (5) | 0.5584 (2) | 0.85459 (13) | 0.1067 (11) | |
C5 | 0.2917 (6) | 0.5140 (3) | 0.82303 (16) | 0.0676 (11) | |
C4 | −0.0683 (6) | 0.4912 (2) | 0.79849 (14) | 0.0553 (9) | |
C3 | 0.2877 (5) | 0.3088 (3) | 0.87403 (13) | 0.0626 (10) |
U11 | U22 | U33 | U12 | U13 | U23 | |
Fe1 | 0.0384 (3) | 0.0517 (3) | 0.0384 (2) | −0.0004 (2) | −0.0018 (2) | 0.0047 (2) |
Fe2 | 0.0388 (2) | 0.0445 (2) | 0.0505 (3) | −0.0012 (2) | 0.0048 (2) | −0.0011 (2) |
S1 | 0.0310 (4) | 0.0528 (4) | 0.0425 (4) | −0.0009 (4) | −0.0030 (4) | 0.0025 (4) |
S2 | 0.0326 (4) | 0.0577 (5) | 0.0396 (4) | −0.0015 (3) | −0.0032 (4) | −0.0018 (4) |
S3 | 0.0765 (7) | 0.0494 (5) | 0.0712 (6) | −0.0132 (5) | 0.0074 (6) | −0.0109 (4) |
N2 | 0.0531 (18) | 0.0530 (16) | 0.0450 (15) | −0.0094 (15) | 0.0074 (14) | −0.0076 (13) |
C22 | 0.049 (2) | 0.064 (2) | 0.0410 (18) | −0.0103 (19) | −0.0034 (18) | 0.0065 (16) |
N1 | 0.0319 (14) | 0.0501 (14) | 0.0316 (12) | 0.0013 (12) | −0.0027 (11) | 0.0013 (10) |
O2 | 0.0529 (16) | 0.0789 (17) | 0.0634 (16) | −0.0022 (13) | 0.0112 (14) | 0.0070 (13) |
C15 | 0.050 (2) | 0.0389 (15) | 0.0378 (16) | 0.0008 (17) | −0.0024 (16) | −0.0075 (14) |
C14 | 0.051 (2) | 0.0440 (17) | 0.0386 (16) | 0.0019 (17) | 0.0071 (17) | −0.0063 (14) |
C17 | 0.062 (2) | 0.057 (2) | 0.0467 (19) | −0.017 (2) | −0.0046 (19) | 0.0089 (16) |
C8 | 0.0343 (17) | 0.0570 (19) | 0.0424 (18) | 0.0067 (15) | 0.0021 (14) | −0.0005 (15) |
C9 | 0.044 (2) | 0.0549 (18) | 0.0363 (17) | 0.0024 (18) | −0.0042 (15) | −0.0033 (14) |
C2 | 0.055 (2) | 0.0471 (19) | 0.0430 (19) | −0.0033 (18) | −0.0045 (17) | 0.0058 (15) |
C10 | 0.0458 (19) | 0.0441 (18) | 0.0301 (15) | 0.0010 (15) | −0.0034 (14) | −0.0016 (14) |
C7 | 0.0414 (19) | 0.0546 (18) | 0.0397 (17) | −0.0037 (16) | −0.0051 (15) | −0.0016 (15) |
C16 | 0.053 (2) | 0.0458 (19) | 0.0375 (18) | −0.0033 (16) | −0.0008 (16) | −0.0018 (14) |
C11 | 0.053 (2) | 0.053 (2) | 0.049 (2) | −0.0013 (17) | 0.0145 (17) | −0.0113 (16) |
C13 | 0.048 (2) | 0.0478 (18) | 0.0301 (16) | −0.0038 (15) | 0.0021 (14) | −0.0030 (14) |
C12 | 0.072 (3) | 0.0394 (18) | 0.052 (2) | −0.0058 (17) | 0.0101 (18) | −0.0087 (15) |
O1 | 0.103 (2) | 0.0630 (17) | 0.087 (2) | 0.0162 (16) | 0.0040 (16) | 0.0124 (14) |
C20 | 0.057 (3) | 0.121 (4) | 0.059 (2) | −0.016 (3) | 0.007 (2) | 0.014 (2) |
C1 | 0.051 (2) | 0.069 (2) | 0.0452 (19) | −0.0027 (19) | 0.0031 (16) | 0.0118 (18) |
C18 | 0.073 (3) | 0.069 (2) | 0.082 (3) | −0.022 (2) | −0.010 (3) | 0.013 (2) |
C19 | 0.067 (3) | 0.096 (3) | 0.078 (3) | −0.033 (3) | −0.008 (3) | 0.030 (2) |
C21 | 0.057 (2) | 0.089 (3) | 0.058 (2) | −0.016 (2) | 0.011 (2) | −0.008 (2) |
O6 | 0.0529 (17) | 0.0811 (19) | 0.093 (2) | 0.0149 (14) | 0.0220 (15) | −0.0113 (15) |
O5 | 0.121 (3) | 0.0787 (19) | 0.105 (2) | 0.0319 (18) | 0.0445 (19) | 0.0460 (18) |
C6 | 0.056 (2) | 0.055 (2) | 0.080 (3) | 0.0155 (18) | 0.013 (2) | 0.005 (2) |
O4 | 0.0653 (18) | 0.170 (3) | 0.0481 (15) | 0.004 (2) | −0.0124 (14) | −0.0157 (17) |
O3 | 0.079 (2) | 0.118 (2) | 0.123 (2) | −0.027 (2) | 0.008 (2) | −0.067 (2) |
C5 | 0.053 (3) | 0.069 (2) | 0.081 (3) | −0.007 (2) | 0.017 (2) | −0.021 (2) |
C4 | 0.061 (2) | 0.0457 (19) | 0.060 (2) | −0.0039 (18) | 0.0030 (19) | 0.0018 (17) |
C3 | 0.048 (2) | 0.093 (3) | 0.047 (2) | 0.004 (2) | 0.0012 (18) | 0.000 (2) |
Fe1—C1 | 1.778 (4) | C14—H14A | 0.9300 |
Fe1—C3 | 1.787 (4) | C17—C18 | 1.395 (5) |
Fe1—C2 | 1.798 (4) | C8—H8A | 0.9700 |
Fe1—S1 | 2.2485 (11) | C8—H8B | 0.9700 |
Fe1—S2 | 2.2487 (11) | C9—C10 | 1.506 (4) |
Fe1—Fe2 | 2.5013 (12) | C9—H9A | 0.9700 |
Fe2—C5 | 1.775 (4) | C9—H9B | 0.9700 |
Fe2—C4 | 1.787 (4) | C10—C11 | 1.386 (4) |
Fe2—C6 | 1.794 (4) | C7—H7A | 0.9700 |
Fe2—S1 | 2.2465 (11) | C7—H7B | 0.9700 |
Fe2—S2 | 2.2534 (11) | C16—C13 | 1.474 (4) |
S1—C7 | 1.815 (3) | C11—C12 | 1.380 (4) |
S2—C8 | 1.823 (3) | C11—H11A | 0.9300 |
S3—C17 | 1.722 (4) | C13—C12 | 1.378 (4) |
S3—C16 | 1.747 (3) | C12—H12A | 0.9300 |
N2—C16 | 1.285 (4) | O1—C1 | 1.143 (4) |
N2—C22 | 1.393 (4) | C20—C21 | 1.370 (5) |
C22—C21 | 1.379 (5) | C20—C19 | 1.372 (5) |
C22—C17 | 1.385 (4) | C20—H20A | 0.9300 |
N1—C8 | 1.445 (3) | C18—C19 | 1.352 (6) |
N1—C7 | 1.448 (4) | C18—H18A | 0.9300 |
N1—C9 | 1.472 (3) | C19—H19A | 0.9300 |
O2—C2 | 1.139 (4) | C21—H21A | 0.9300 |
C15—C14 | 1.375 (4) | O6—C4 | 1.137 (4) |
C15—C10 | 1.378 (4) | O5—C6 | 1.137 (4) |
C15—H15A | 0.9300 | O4—C3 | 1.138 (4) |
C14—C13 | 1.388 (4) | O3—C5 | 1.143 (4) |
C1—Fe1—C3 | 100.12 (16) | C18—C17—S3 | 129.6 (3) |
C1—Fe1—C2 | 99.64 (15) | N1—C8—S2 | 115.84 (19) |
C3—Fe1—C2 | 91.32 (15) | N1—C8—H8A | 108.3 |
C1—Fe1—S1 | 105.63 (11) | S2—C8—H8A | 108.3 |
C3—Fe1—S1 | 154.05 (13) | N1—C8—H8B | 108.3 |
C2—Fe1—S1 | 87.60 (11) | S2—C8—H8B | 108.3 |
C1—Fe1—S2 | 98.12 (11) | H8A—C8—H8B | 107.4 |
C3—Fe1—S2 | 88.79 (12) | N1—C9—C10 | 114.4 (2) |
C2—Fe1—S2 | 161.94 (11) | N1—C9—H9A | 108.7 |
S1—Fe1—S2 | 84.46 (4) | C10—C9—H9A | 108.7 |
C1—Fe1—Fe2 | 147.16 (10) | N1—C9—H9B | 108.7 |
C3—Fe1—Fe2 | 99.56 (12) | C10—C9—H9B | 108.7 |
C2—Fe1—Fe2 | 105.92 (11) | H9A—C9—H9B | 107.6 |
S1—Fe1—Fe2 | 56.15 (3) | O2—C2—Fe1 | 178.9 (3) |
S2—Fe1—Fe2 | 56.34 (3) | C15—C10—C11 | 118.6 (3) |
C5—Fe2—C4 | 89.06 (17) | C15—C10—C9 | 120.2 (3) |
C5—Fe2—C6 | 99.18 (18) | C11—C10—C9 | 121.2 (3) |
C4—Fe2—C6 | 100.78 (15) | N1—C7—S1 | 116.7 (2) |
C5—Fe2—S1 | 157.95 (13) | N1—C7—H7A | 108.1 |
C4—Fe2—S1 | 88.16 (11) | S1—C7—H7A | 108.1 |
C6—Fe2—S1 | 102.83 (13) | N1—C7—H7B | 108.1 |
C5—Fe2—S2 | 89.58 (13) | S1—C7—H7B | 108.1 |
C4—Fe2—S2 | 156.54 (12) | H7A—C7—H7B | 107.3 |
C6—Fe2—S2 | 102.55 (11) | N2—C16—C13 | 124.1 (3) |
S1—Fe2—S2 | 84.40 (5) | N2—C16—S3 | 115.5 (2) |
C5—Fe2—Fe1 | 103.08 (14) | C13—C16—S3 | 120.4 (2) |
C4—Fe2—Fe1 | 101.48 (11) | C12—C11—C10 | 119.8 (3) |
C6—Fe2—Fe1 | 148.57 (11) | C12—C11—H11A | 120.1 |
S1—Fe2—Fe1 | 56.23 (3) | C10—C11—H11A | 120.1 |
S2—Fe2—Fe1 | 56.16 (3) | C12—C13—C14 | 117.9 (3) |
C7—S1—Fe2 | 110.81 (10) | C12—C13—C16 | 122.2 (3) |
C7—S1—Fe1 | 113.84 (10) | C14—C13—C16 | 120.0 (3) |
Fe2—S1—Fe1 | 67.62 (3) | C13—C12—C11 | 121.9 (3) |
C8—S2—Fe1 | 109.38 (11) | C13—C12—H12A | 119.1 |
C8—S2—Fe2 | 111.55 (10) | C11—C12—H12A | 119.1 |
Fe1—S2—Fe2 | 67.50 (4) | C21—C20—C19 | 120.3 (4) |
C17—S3—C16 | 89.05 (16) | C21—C20—H20A | 119.9 |
C16—N2—C22 | 110.9 (3) | C19—C20—H20A | 119.9 |
C21—C22—C17 | 119.6 (3) | O1—C1—Fe1 | 176.9 (3) |
C21—C22—N2 | 125.6 (3) | C19—C18—C17 | 118.2 (4) |
C17—C22—N2 | 114.7 (3) | C19—C18—H18A | 120.9 |
C8—N1—C7 | 111.8 (2) | C17—C18—H18A | 120.9 |
C8—N1—C9 | 110.6 (2) | C18—C19—C20 | 121.9 (4) |
C7—N1—C9 | 109.4 (2) | C18—C19—H19A | 119.0 |
C14—C15—C10 | 121.3 (3) | C20—C19—H19A | 119.0 |
C14—C15—H15A | 119.3 | C20—C21—C22 | 119.4 (4) |
C10—C15—H15A | 119.3 | C20—C21—H21A | 120.3 |
C15—C14—C13 | 120.5 (3) | C22—C21—H21A | 120.3 |
C15—C14—H14A | 119.7 | O5—C6—Fe2 | 179.3 (3) |
C13—C14—H14A | 119.7 | O3—C5—Fe2 | 177.4 (4) |
C22—C17—C18 | 120.6 (4) | O6—C4—Fe2 | 178.2 (3) |
C22—C17—S3 | 109.8 (3) | O4—C3—Fe1 | 179.8 (4) |
C1—Fe1—Fe2—C5 | −124.5 (2) | C6—Fe2—S2—C8 | −51.71 (17) |
C3—Fe1—Fe2—C5 | 1.57 (17) | S1—Fe2—S2—C8 | 50.22 (11) |
C2—Fe1—Fe2—C5 | 95.72 (16) | Fe1—Fe2—S2—C8 | 102.86 (12) |
S1—Fe1—Fe2—C5 | 171.62 (12) | C5—Fe2—S2—Fe1 | 106.11 (13) |
S2—Fe1—Fe2—C5 | −80.50 (13) | C4—Fe2—S2—Fe1 | 19.5 (3) |
C1—Fe1—Fe2—C4 | 143.7 (2) | C6—Fe2—S2—Fe1 | −154.58 (13) |
C3—Fe1—Fe2—C4 | −90.15 (16) | S1—Fe2—S2—Fe1 | −52.64 (4) |
C2—Fe1—Fe2—C4 | 4.00 (16) | C16—N2—C22—C21 | −180.0 (3) |
S1—Fe1—Fe2—C4 | 79.90 (12) | C16—N2—C22—C17 | 0.1 (4) |
S2—Fe1—Fe2—C4 | −172.22 (12) | C10—C15—C14—C13 | 1.0 (4) |
C1—Fe1—Fe2—C6 | 9.4 (3) | C21—C22—C17—C18 | −1.0 (5) |
C3—Fe1—Fe2—C6 | 135.5 (3) | N2—C22—C17—C18 | 178.9 (3) |
C2—Fe1—Fe2—C6 | −130.3 (3) | C21—C22—C17—S3 | 179.7 (3) |
S1—Fe1—Fe2—C6 | −54.4 (2) | N2—C22—C17—S3 | −0.4 (4) |
S2—Fe1—Fe2—C6 | 53.5 (2) | C16—S3—C17—C22 | 0.4 (3) |
C1—Fe1—Fe2—S1 | 63.8 (2) | C16—S3—C17—C18 | −178.8 (3) |
C3—Fe1—Fe2—S1 | −170.05 (11) | C7—N1—C8—S2 | −70.5 (3) |
C2—Fe1—Fe2—S1 | −75.90 (11) | C9—N1—C8—S2 | 167.3 (2) |
S2—Fe1—Fe2—S1 | 107.88 (5) | Fe1—S2—C8—N1 | 73.4 (2) |
C1—Fe1—Fe2—S2 | −44.0 (2) | Fe2—S2—C8—N1 | 0.7 (3) |
C3—Fe1—Fe2—S2 | 82.07 (11) | C8—N1—C9—C10 | −64.8 (3) |
C2—Fe1—Fe2—S2 | 176.22 (11) | C7—N1—C9—C10 | 171.6 (2) |
S1—Fe1—Fe2—S2 | −107.88 (5) | C14—C15—C10—C11 | −0.3 (4) |
C5—Fe2—S1—C7 | −130.3 (3) | C14—C15—C10—C9 | 175.7 (3) |
C4—Fe2—S1—C7 | 146.74 (16) | N1—C9—C10—C15 | 146.5 (3) |
C6—Fe2—S1—C7 | 46.09 (15) | N1—C9—C10—C11 | −37.6 (4) |
S2—Fe2—S1—C7 | −55.54 (11) | C8—N1—C7—S1 | 63.7 (3) |
Fe1—Fe2—S1—C7 | −108.12 (11) | C9—N1—C7—S1 | −173.4 (2) |
C5—Fe2—S1—Fe1 | −22.2 (3) | Fe2—S1—C7—N1 | 11.1 (2) |
C4—Fe2—S1—Fe1 | −105.14 (12) | Fe1—S1—C7—N1 | −62.8 (2) |
C6—Fe2—S1—Fe1 | 154.22 (11) | C22—N2—C16—C13 | −178.7 (3) |
S2—Fe2—S1—Fe1 | 52.59 (3) | C22—N2—C16—S3 | 0.3 (3) |
C1—Fe1—S1—C7 | −45.86 (16) | C17—S3—C16—N2 | −0.4 (3) |
C3—Fe1—S1—C7 | 126.7 (3) | C17—S3—C16—C13 | 178.6 (3) |
C2—Fe1—S1—C7 | −145.20 (15) | C15—C10—C11—C12 | −0.7 (4) |
S2—Fe1—S1—C7 | 51.04 (12) | C9—C10—C11—C12 | −176.7 (3) |
Fe2—Fe1—S1—C7 | 103.78 (12) | C15—C14—C13—C12 | −0.6 (4) |
C1—Fe1—S1—Fe2 | −149.64 (11) | C15—C14—C13—C16 | 179.3 (3) |
C3—Fe1—S1—Fe2 | 22.9 (3) | N2—C16—C13—C12 | −177.5 (3) |
C2—Fe1—S1—Fe2 | 111.02 (11) | S3—C16—C13—C12 | 3.6 (4) |
S2—Fe1—S1—Fe2 | −52.74 (3) | N2—C16—C13—C14 | 2.5 (5) |
C1—Fe1—S2—C8 | 51.61 (15) | S3—C16—C13—C14 | −176.3 (2) |
C3—Fe1—S2—C8 | 151.65 (15) | C14—C13—C12—C11 | −0.4 (5) |
C2—Fe1—S2—C8 | −117.8 (3) | C16—C13—C12—C11 | 179.7 (3) |
S1—Fe1—S2—C8 | −53.44 (11) | C10—C11—C12—C13 | 1.1 (5) |
Fe2—Fe1—S2—C8 | −106.01 (11) | C22—C17—C18—C19 | 0.4 (5) |
C1—Fe1—S2—Fe2 | 157.61 (11) | S3—C17—C18—C19 | 179.6 (3) |
C3—Fe1—S2—Fe2 | −102.34 (12) | C17—C18—C19—C20 | −0.2 (6) |
C2—Fe1—S2—Fe2 | −11.8 (3) | C21—C20—C19—C18 | 0.6 (6) |
S1—Fe1—S2—Fe2 | 52.57 (3) | C19—C20—C21—C22 | −1.2 (6) |
C5—Fe2—S2—C8 | −151.02 (17) | C17—C22—C21—C20 | 1.4 (5) |
C4—Fe2—S2—C8 | 122.3 (3) | N2—C22—C21—C20 | −178.6 (3) |
Experimental details
Crystal data | |
Chemical formula | [Fe2(C16H14N2S3)(CO)6] |
Mr | 610.23 |
Crystal system, space group | Orthorhombic, P212121 |
Temperature (K) | 273 |
a, b, c (Å) | 6.651 (3), 14.208 (7), 25.854 (12) |
V (Å3) | 2443.2 (19) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 1.49 |
Crystal size (mm) | 0.25 × 0.08 × 0.07 |
Data collection | |
Diffractometer | Bruker SMART CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 1997) |
Tmin, Tmax | 0.332, 0.905 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 11654, 3991, 3434 |
Rint | 0.030 |
(sin θ/λ)max (Å−1) | 0.583 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.027, 0.052, 0.98 |
No. of reflections | 3991 |
No. of parameters | 316 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.22, −0.16 |
Computer programs: SMART (Bruker, 1997), SAINT-Plus (Bruker, 2001), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).
Fe1—S1 | 2.2485 (11) | Fe2—S2 | 2.2534 (11) |
Fe1—S2 | 2.2487 (11) | N1—C8 | 1.445 (3) |
Fe1—Fe2 | 2.5013 (12) | N1—C7 | 1.448 (4) |
Fe2—S1 | 2.2465 (11) | N1—C9 | 1.472 (3) |
C1—Fe1—Fe2 | 147.16 (10) | C8—N1—C9 | 110.6 (2) |
C6—Fe2—Fe1 | 148.57 (11) | C7—N1—C9 | 109.4 (2) |
C8—N1—C7 | 111.8 (2) |
Acknowledgements
The authors thank the Scientific and Technological Development Project of Jilin Province (grant No. 201101103) and the National Natural Science Foundation of China (grant No. 61106050) for financial support.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
The iron-only hydrogenases are important enzymes which catalyze the reduction of protons to molecular hydrogen in microorganisms (Cammack, 1999, Evans & Pickett, 2003). The crystal structure elucidation indicates that the active site of iron-only hydrogenase contains carbon monoxide ligands and an azadithiolate bridging two iron centers (Nicolet et al., 2000, Frey, 2002). Small synthetic model compounds have turned out to be an alluring topic for the purpose to understand the mechanisms of the enzymes (Felton et al., 2009, Tard & Pickett, 2009). The title compound was prepared to mimic structurally the active site of iron-only hydrogenases. Herein we report its crystal structure.
The structure of title compound is similar to the active site of iron-only hydrogenases, with a butterfly architectonic Fe2S2 core and the usual distorted square-pyramidal geometry around the iron centre. The length of Fe—Fe bond [2.5013 (12) Å] is somewhat shorter than those in the structures of natural enzymes (ca 2.6 Å) (Peters et al., 1998, Nicolet et al., 1999). The N-substituted azadithiolate ligand is η2:η2-coordinated to the Fe(CO)3 moieties to form two fused six-member rings. Ring Fe1—S1—C7—N1—C8—S2 has a chair conformation, while ring Fe2—S1—C7—N1—C8—S2 has a boat conformation. The substituted benzyl ring attached to N1 atom resides in an equatorial position and the nitrogen lone electron pair is in an axial position. As a result, the C1—Fe1—Fe2 angle [147.16 (11)°] and the C6—Fe2—Fe1 angle [148.57 (11)°] are almost equal. The sum of C—N—C angles around N1 atom is 331.9 (12)°, roughly consistent with an sp3-hybridization of N1 atom.
Selected bond distances and angles are summarized in Table 1, and the molecular structure of the title compound is shown in Fig.1.