organic compounds
(1S,2S,6R,7aR)-2-Benzyl-1,6-dihydroxyhexahydropyrrolizin-3-one
aLaboratory of Structural Biology and Crystallography, Institute of Chemistry, University of Campinas, CP6154, CEP 13083-970, Campinas-SP, Brazil, and bLaboratory of Synthesis of Natural Products and Drugs, Institute of Chemistry, University of Campinas, CP6154, CEP 13083-970, Campinas-SP, Brazil
*Correspondence e-mail: aparicio@iqm.unicamp.br
In the title compound, C14H17NO3, the dihedral angles show that the H atoms at two stereocenters are in a trans-diaxial configuration. In the crystal, the molecules are linked by O—H⋯O hydrogen bonds. The of the molecule has been established on the basis of of the Hooft and Flack parameters.
Related literature
For a synthetic sequence for the preparation of the title compound, see: de Luna Freire et al. (2011). For the use of this type of compounds as LFA-1 (Lymphocyte Function-Associated Antigen-1) inhibitors, see: Baumann (2007). For a related structure, see: Newton et al. (2004).
Experimental
Crystal data
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Data collection
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Refinement
Data collection: APEX2 (Bruker, 2010); cell SAINT (Bruker, 2010); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: WinGX (Farrugia, 1999) and PLATON (Spek, 2009); software used to prepare material for publication: publCIF (Westrip, 2010) and PLATON.
Supporting information
10.1107/S1600536812002334/pv2494sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536812002334/pv2494Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536812002334/pv2494Isup3.cml
The title compound was prepared using a synthetic sequence described in the literature (de Luna Freire et al., 2011) and purified by flash silica gel
(CH2Cl2:MeOH – solvent gradient: 0:100 to 97:03) to afford 0.06 g (as a white solid) in 97% yield. It was then recrystallized using the liquid-vapor saturation method, dissolved in ethanol and crystallized with a vapor pressure of a second less polar liquid (ethyl ether), in a closed camera, providing the slow formation of crystals.The H-atoms bonded to C-atoms were included in the refinements at geometrically idealized positions with C—H = 0.95, 0.99 and 1.00 Å, for aryl, methylene and methyne H-atoms, respectively, with and Uiso(H) = 1.2 times Ueq(C). The H-atoms bonded to O atoms were allowed to refine freely. The
was x=0.00 (16) (Flack, 1983). Further analysis of the was performed using likelihood methods (Hooft et al., 2008) with PLATON (Spek, 2009). A total of 943 Bijvoet pairs were included in the calculations. The resulting value of the Hooft parameter was y = 0.00 (2), with a probability for an inverted structure smaller than 1x10-100. These results indicated that the has been correctly assigned.Data collection: APEX2 (Bruker, 2010); cell
SAINT (Bruker, 2010); data reduction: SAINT (Bruker, 2010); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: WinGX (Farrugia, 1999) and PLATON (Spek, 2009); software used to prepare material for publication: publCIF (Westrip, 2010) and PLATON (Spek, 2009).C14H17NO3 | Dx = 1.297 Mg m−3 |
Mr = 247.29 | Cu Kα radiation, λ = 1.54178 Å |
Orthorhombic, P212121 | Cell parameters from 2295 reflections |
a = 6.6241 (3) Å | θ = 4.5–69.5° |
b = 13.6873 (6) Å | µ = 0.74 mm−1 |
c = 13.9726 (6) Å | T = 100 K |
V = 1266.84 (10) Å3 | Rectangular, colourless |
Z = 4 | 0.17 × 0.15 × 0.12 mm |
F(000) = 528 |
Bruker Kappa APEXII DUO diffractometer | 2290 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.026 |
Graphite monochromator | θmax = 69.5°, θmin = 4.5° |
Bruker APEX CCD area–detector scans | h = −7→7 |
26923 measured reflections | k = −15→16 |
2295 independent reflections | l = −16→16 |
Refinement on F2 | Hydrogen site location: inferred from neighbouring sites |
Least-squares matrix: full | H atoms treated by a mixture of independent and constrained refinement |
R[F2 > 2σ(F2)] = 0.026 | w = 1/[σ2(Fo2) + (0.0491P)2 + 0.1808P] where P = (Fo2 + 2Fc2)/3 |
wR(F2) = 0.078 | (Δ/σ)max = 0.001 |
S = 1.15 | Δρmax = 0.17 e Å−3 |
2295 reflections | Δρmin = −0.16 e Å−3 |
172 parameters | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
0 restraints | Extinction coefficient: 0.0086 (8) |
Primary atom site location: structure-invariant direct methods | Absolute structure: Flack (1983) and Hooft et al. (2008) [Hooft parameter = 0.00(2), (943 Bijvoet pairs)]' |
Secondary atom site location: difference Fourier map | Absolute structure parameter: 0.00 (16) |
C14H17NO3 | V = 1266.84 (10) Å3 |
Mr = 247.29 | Z = 4 |
Orthorhombic, P212121 | Cu Kα radiation |
a = 6.6241 (3) Å | µ = 0.74 mm−1 |
b = 13.6873 (6) Å | T = 100 K |
c = 13.9726 (6) Å | 0.17 × 0.15 × 0.12 mm |
Bruker Kappa APEXII DUO diffractometer | 2290 reflections with I > 2σ(I) |
26923 measured reflections | Rint = 0.026 |
2295 independent reflections |
R[F2 > 2σ(F2)] = 0.026 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.078 | Δρmax = 0.17 e Å−3 |
S = 1.15 | Δρmin = −0.16 e Å−3 |
2295 reflections | Absolute structure: Flack (1983) and Hooft et al. (2008) [Hooft parameter = 0.00(2), (943 Bijvoet pairs)]' |
172 parameters | Absolute structure parameter: 0.00 (16) |
0 restraints |
Experimental. [α]D20 + 51 (c 1, MeOH); M. p. 135–136° C; IR (KBr, vmax): 3404, 3232, 2987, 2936, 2897, 2871, 1670, 1447, 1416, 1375, 1300, 1263, 1222,1175, 1121 cm-1; 1H NMR (500 MHz, CD3OD) δ 1.55 (dddd, J = 13.4, 5.3, 4.0, 1.0 Hz, 1H, H-2 A); 2.25 (ddd, J = 13.4, 8.0, 5.4 Hz, 1H, H-2B); 2.93 (m, 2H, H-8, H-5); 3.02 (m, J = 7.5, 1.8 Hz, 1H, H-6); 3.08 (ddd, J = 12.0, 4.9, 1.3 Hz, 1H, H-14 A); 3.52 (dd, J = 12.0, 2.4 Hz, 1H, H-14B); 3.64 (m, JH3,H4 = 7.0, J = 8.0, 5.3 Hz, 1H, H-3); 3.88 (dd,JH4,H5 = 9.4, JH3,H4 = 7.0 Hz, 1H, H-4); 4.41 (m, J = 5.1, 4.0, 3.0 Hz, 1H, H-1); 7.15 (m, 1H, H—Ar); 7.23 (m, 2H, H—Ar); 7.29 (m, 2H, H—Ar); 13C NMR (62.5 MHz, (CD3)2CO) δ 34.4, 38.6, 52.3, 54.0, 65.6, 72.4, 80.6, 126.5, 128.7, 130.3, 141.0, 175.6; HRMS (ESI-TOF) Calcd. for C14H18NO3 [M + H]+ 248.1287. Found 248.1286. |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.38278 (15) | 0.66691 (6) | 0.06882 (7) | 0.0253 (2) | |
O2 | −0.07013 (13) | 0.91601 (7) | 0.27608 (7) | 0.0264 (2) | |
O3 | 0.61142 (13) | 1.03167 (6) | 0.28357 (7) | 0.0238 (2) | |
N1 | 0.21491 (16) | 0.88149 (7) | 0.19167 (7) | 0.0204 (3) | |
C1 | 0.3664 (2) | 0.76715 (9) | 0.09195 (9) | 0.0217 (3) | |
H1 | 0.3789 | 0.8046 | 0.0308 | 0.026* | |
C2 | 0.52450 (19) | 0.80862 (9) | 0.16169 (9) | 0.0216 (3) | |
H2A | 0.5399 | 0.7667 | 0.2189 | 0.026* | |
H2B | 0.6575 | 0.8168 | 0.1304 | 0.026* | |
C3 | 0.42952 (18) | 0.90724 (9) | 0.18696 (9) | 0.0193 (3) | |
H3 | 0.4529 | 0.9549 | 0.1338 | 0.023* | |
C4 | 0.46008 (18) | 0.95809 (9) | 0.28423 (9) | 0.0192 (3) | |
H4 | 0.4913 | 0.9084 | 0.3346 | 0.023* | |
C5 | 0.25242 (19) | 1.00357 (9) | 0.30318 (9) | 0.0200 (3) | |
H5 | 0.2442 | 1.0650 | 0.2646 | 0.024* | |
C6 | 0.20002 (19) | 1.03016 (9) | 0.40713 (9) | 0.0235 (3) | |
H6A | 0.2759 | 1.0898 | 0.4249 | 0.028* | |
H6B | 0.0544 | 1.0461 | 0.4105 | 0.028* | |
C7 | 0.2453 (2) | 0.95143 (9) | 0.48012 (9) | 0.0256 (3) | |
C8 | 0.1026 (3) | 0.87967 (10) | 0.50128 (10) | 0.0335 (3) | |
H8 | −0.0244 | 0.8801 | 0.4697 | 0.040* | |
C9 | 0.1451 (3) | 0.80737 (11) | 0.56844 (10) | 0.0428 (4) | |
H9 | 0.0466 | 0.7591 | 0.5826 | 0.051* | |
C10 | 0.3288 (3) | 0.80545 (11) | 0.61435 (10) | 0.0421 (4) | |
H10 | 0.3573 | 0.7556 | 0.6597 | 0.050* | |
C11 | 0.10960 (19) | 0.92968 (8) | 0.25733 (9) | 0.0210 (3) | |
C12 | 0.4306 (2) | 0.94914 (10) | 0.52735 (9) | 0.0288 (3) | |
H12 | 0.5291 | 0.9976 | 0.5137 | 0.035* | |
C13 | 0.4730 (3) | 0.87670 (11) | 0.59435 (10) | 0.0372 (4) | |
H13 | 0.5996 | 0.8759 | 0.6263 | 0.045* | |
C14 | 0.1616 (2) | 0.79469 (9) | 0.13686 (9) | 0.0235 (3) | |
H14A | 0.0595 | 0.8096 | 0.0872 | 0.028* | |
H14B | 0.1101 | 0.7420 | 0.1788 | 0.028* | |
H3A | 0.737 (4) | 1.0009 (16) | 0.2841 (14) | 0.050 (5)* | |
H1A | 0.379 (3) | 0.6326 (15) | 0.1204 (16) | 0.043 (5)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0350 (5) | 0.0173 (4) | 0.0237 (4) | 0.0039 (4) | 0.0009 (4) | −0.0011 (3) |
O2 | 0.0173 (4) | 0.0252 (4) | 0.0368 (5) | 0.0013 (4) | 0.0018 (4) | −0.0020 (4) |
O3 | 0.0171 (4) | 0.0209 (4) | 0.0334 (5) | −0.0010 (4) | 0.0019 (4) | −0.0044 (4) |
N1 | 0.0183 (5) | 0.0200 (5) | 0.0229 (5) | 0.0017 (4) | −0.0018 (4) | −0.0007 (4) |
C1 | 0.0283 (7) | 0.0173 (6) | 0.0194 (6) | 0.0033 (5) | −0.0009 (5) | 0.0005 (5) |
C2 | 0.0212 (6) | 0.0210 (6) | 0.0226 (6) | 0.0038 (5) | 0.0022 (5) | −0.0001 (5) |
C3 | 0.0181 (6) | 0.0189 (5) | 0.0209 (6) | 0.0020 (5) | 0.0013 (4) | 0.0018 (5) |
C4 | 0.0185 (6) | 0.0166 (5) | 0.0226 (6) | 0.0008 (4) | 0.0018 (4) | −0.0003 (5) |
C5 | 0.0188 (6) | 0.0162 (5) | 0.0251 (6) | 0.0022 (4) | 0.0024 (5) | 0.0008 (5) |
C6 | 0.0225 (6) | 0.0196 (6) | 0.0283 (6) | 0.0001 (5) | 0.0056 (5) | −0.0049 (5) |
C7 | 0.0351 (7) | 0.0200 (6) | 0.0217 (6) | 0.0004 (5) | 0.0089 (5) | −0.0059 (5) |
C8 | 0.0473 (9) | 0.0292 (7) | 0.0242 (6) | −0.0096 (6) | 0.0082 (6) | −0.0073 (5) |
C9 | 0.0763 (13) | 0.0275 (7) | 0.0245 (7) | −0.0166 (8) | 0.0113 (8) | −0.0040 (6) |
C10 | 0.0797 (13) | 0.0242 (7) | 0.0223 (7) | 0.0054 (8) | 0.0092 (8) | −0.0007 (5) |
C11 | 0.0203 (6) | 0.0182 (5) | 0.0246 (6) | 0.0039 (5) | −0.0010 (5) | 0.0023 (5) |
C12 | 0.0342 (7) | 0.0259 (6) | 0.0263 (6) | 0.0032 (6) | 0.0067 (5) | −0.0017 (5) |
C13 | 0.0522 (10) | 0.0351 (8) | 0.0244 (7) | 0.0117 (7) | 0.0047 (7) | −0.0030 (6) |
C14 | 0.0238 (6) | 0.0227 (6) | 0.0240 (6) | 0.0009 (5) | −0.0033 (5) | −0.0035 (5) |
O1—C1 | 1.4138 (15) | C5—C6 | 1.5371 (16) |
O1—H1A | 0.86 (2) | C5—H5 | 1.0000 |
O2—C11 | 1.2333 (16) | C6—C7 | 1.5138 (18) |
O3—C4 | 1.4210 (14) | C6—H6A | 0.9900 |
O3—H3A | 0.93 (2) | C6—H6B | 0.9900 |
N1—C11 | 1.3279 (17) | C7—C12 | 1.394 (2) |
N1—C14 | 1.4571 (16) | C7—C8 | 1.395 (2) |
N1—C3 | 1.4661 (16) | C8—C9 | 1.392 (2) |
C1—C2 | 1.5390 (18) | C8—H8 | 0.9500 |
C1—C14 | 1.5417 (18) | C9—C10 | 1.376 (3) |
C1—H1 | 1.0000 | C9—H9 | 0.9500 |
C2—C3 | 1.5306 (16) | C10—C13 | 1.393 (3) |
C2—H2A | 0.9900 | C10—H10 | 0.9500 |
C2—H2B | 0.9900 | C12—C13 | 1.392 (2) |
C3—C4 | 1.5403 (16) | C12—H12 | 0.9500 |
C3—H3 | 1.0000 | C13—H13 | 0.9500 |
C4—C5 | 1.5328 (17) | C14—H14A | 0.9900 |
C4—H4 | 1.0000 | C14—H14B | 0.9900 |
C5—C11 | 1.5258 (17) | ||
C1—O1—H1A | 109.6 (14) | C6—C5—H5 | 107.3 |
C4—O3—H3A | 107.9 (14) | C7—C6—C5 | 115.04 (10) |
C11—N1—C14 | 129.85 (11) | C7—C6—H6A | 108.5 |
C11—N1—C3 | 114.90 (10) | C5—C6—H6A | 108.5 |
C14—N1—C3 | 114.06 (10) | C7—C6—H6B | 108.5 |
O1—C1—C2 | 116.78 (11) | C5—C6—H6B | 108.5 |
O1—C1—C14 | 113.45 (11) | H6A—C6—H6B | 107.5 |
C2—C1—C14 | 104.54 (10) | C12—C7—C8 | 118.72 (13) |
O1—C1—H1 | 107.2 | C12—C7—C6 | 120.64 (12) |
C2—C1—H1 | 107.2 | C8—C7—C6 | 120.64 (14) |
C14—C1—H1 | 107.2 | C9—C8—C7 | 120.42 (16) |
C3—C2—C1 | 101.05 (10) | C9—C8—H8 | 119.8 |
C3—C2—H2A | 111.6 | C7—C8—H8 | 119.8 |
C1—C2—H2A | 111.6 | C10—C9—C8 | 120.42 (15) |
C3—C2—H2B | 111.6 | C10—C9—H9 | 119.8 |
C1—C2—H2B | 111.6 | C8—C9—H9 | 119.8 |
H2A—C2—H2B | 109.4 | C9—C10—C13 | 119.97 (15) |
N1—C3—C2 | 101.36 (10) | C9—C10—H10 | 120.0 |
N1—C3—C4 | 101.33 (9) | C13—C10—H10 | 120.0 |
C2—C3—C4 | 123.23 (10) | O2—C11—N1 | 125.35 (12) |
N1—C3—H3 | 109.9 | O2—C11—C5 | 127.58 (11) |
C2—C3—H3 | 109.9 | N1—C11—C5 | 107.07 (11) |
C4—C3—H3 | 109.9 | C13—C12—C7 | 120.81 (14) |
O3—C4—C5 | 110.27 (9) | C13—C12—H12 | 119.6 |
O3—C4—C3 | 114.03 (10) | C7—C12—H12 | 119.6 |
C5—C4—C3 | 102.59 (10) | C12—C13—C10 | 119.65 (16) |
O3—C4—H4 | 109.9 | C12—C13—H13 | 120.2 |
C5—C4—H4 | 109.9 | C10—C13—H13 | 120.2 |
C3—C4—H4 | 109.9 | N1—C14—C1 | 101.53 (10) |
C11—C5—C4 | 102.40 (9) | N1—C14—H14A | 111.5 |
C11—C5—C6 | 114.43 (10) | C1—C14—H14A | 111.5 |
C4—C5—C6 | 117.51 (10) | N1—C14—H14B | 111.5 |
C11—C5—H5 | 107.3 | C1—C14—H14B | 111.5 |
C4—C5—H5 | 107.3 | H14A—C14—H14B | 109.3 |
C(11)—N(1)—C(3)—C(2) | 145.23 (10) | H(1)—C(1)—C(2)—C(3) | 73 |
C(11)—N(1)—C(3)—C(4) | 17.61 (13) | H(1)—C(1)—C(2)—H(2A) | −169 |
C(14)—N(1)—C(3)—C(2) | −23.51 (13) | H(1)—C(1)—C(2)—H(2B) | −46 |
C(14)—N(1)—C(3)—C(4) | −151.12 (10) | O(1)—C(1)—C(14)—H(14A) | −86 |
C(3)—N(1)—C(11)—O(2) | −176.49 (12) | O(1)—C(1)—C(14)—H(14B) | 36 |
C(3)—N(1)—C(11)—C(5) | 3.73 (13) | C(2)—C(1)—C(14)—H(14A) | 145 |
C(14)—N(1)—C(11)—O(2) | −9.9 (2) | C(2)—C(1)—C(14)—H(14B) | −92 |
C(14)—N(1)—C(11)—C(5) | 170.29 (11) | H(1)—C(1)—C(14)—N(1) | −87 |
C(3)—N(1)—C(14)—C(1) | −1.76 (13) | H(1)—C(1)—C(14)—H(14A) | 32 |
C(11)—N(1)—C(14)—C(1) | −168.41 (12) | H(1)—C(1)—C(14)—H(14B) | 154 |
O(1)—C(1)—C(2)—C(3) | −167.02 (10) | C(1)—C(2)—C(3)—H(3) | −78 |
C(14)—C(1)—C(2)—C(3) | −40.78 (12) | H(2A)—C(2)—C(3)—N(1) | −81 |
O(1)—C(1)—C(14)—N(1) | 154.80 (10) | H(2A)—C(2)—C(3)—C(4) | 31 |
C(2)—C(1)—C(14)—N(1) | 26.51 (12) | H(2A)—C(2)—C(3)—H(3) | 163 |
C(1)—C(2)—C(3)—N(1) | 38.05 (11) | H(2B)—C(2)—C(3)—N(1) | 157 |
C(1)—C(2)—C(3)—C(4) | 149.83 (11) | H(2B)—C(2)—C(3)—C(4) | −91 |
N(1)—C(3)—C(4)—O(3) | −149.89 (9) | H(2B)—C(2)—C(3)—H(3) | 41 |
N(1)—C(3)—C(4)—C(5) | −30.67 (11) | N(1)—C(3)—C(4)—H(4) | 86 |
C(2)—C(3)—C(4)—O(3) | 98.31 (13) | C(2)—C(3)—C(4)—H(4) | −26 |
C(2)—C(3)—C(4)—C(5) | −142.47 (11) | H(3)—C(3)—C(4)—O(3) | −34 |
O(3)—C(4)—C(5)—C(6) | −78.74 (13) | H(3)—C(3)—C(4)—C(5) | 86 |
O(3)—C(4)—C(5)—C(11) | 154.95 (10) | H(3)—C(3)—C(4)—H(4) | −158 |
C(3)—C(4)—C(5)—C(6) | 159.44 (10) | O(3)—C(4)—C(5)—H(5) | 42 |
C(3)—C(4)—C(5)—C(11) | 33.13 (12) | C(3)—C(4)—C(5)—H(5) | −80 |
C(4)—C(5)—C(6)—C(7) | −47.18 (15) | H(4)—C(4)—C(5)—C(6) | 43 |
C(11)—C(5)—C(6)—C(7) | 72.99 (14) | H(4)—C(4)—C(5)—C(11) | −84 |
C(4)—C(5)—C(11)—O(2) | 156.61 (12) | H(4)—C(4)—C(5)—H(5) | 163 |
C(4)—C(5)—C(11)—N(1) | −23.61 (12) | C(4)—C(5)—C(6)—H(6A) | 75 |
C(6)—C(5)—C(11)—O(2) | 28.33 (18) | C(4)—C(5)—C(6)—H(6B) | −169 |
C(6)—C(5)—C(11)—N(1) | −151.89 (10) | C(11)—C(5)—C(6)—H(6A) | −165 |
C(5)—C(6)—C(7)—C(8) | −87.85 (15) | C(11)—C(5)—C(6)—H(6B) | −49 |
C(5)—C(6)—C(7)—C(12) | 92.02 (14) | H(5)—C(5)—C(6)—C(7) | −168 |
C(6)—C(7)—C(8)—C(9) | 179.96 (13) | H(5)—C(5)—C(6)—H(6A) | −46 |
C(12)—C(7)—C(8)—C(9) | 0.1 (2) | H(5)—C(5)—C(6)—H(6B) | 70 |
C(6)—C(7)—C(12)—C(13) | −179.84 (12) | H(5)—C(5)—C(11)—O(2) | −91 |
C(8)—C(7)—C(12)—C(13) | 0.0 (2) | H(5)—C(5)—C(11)—N(1) | 89 |
C(7)—C(8)—C(9)—C(10) | −0.4 (2) | H(6A)—C(6)—C(7)—C(8) | 150 |
C(8)—C(9)—C(10)—C(13) | 0.6 (2) | H(6A)—C(6)—C(7)—C(12) | −30 |
C(9)—C(10)—C(13)—C(12) | −0.5 (2) | H(6B)—C(6)—C(7)—C(8) | 34 |
C(7)—C(12)—C(13)—C(10) | 0.2 (2) | H(6B)—C(6)—C(7)—C(12) | −146 |
H(1A)—O(1)—C(1)—C(2) | 56.8 (14) | C(6)—C(7)—C(8)—H(8) | 0 |
H(1A)—O(1)—C(1)—C(14) | −64.9 (14) | C(12)—C(7)—C(8)—H(8) | −180 |
H(1A)—O(1)—C(1)—H(1) | 177 | C(6)—C(7)—C(12)—H(12) | 0 |
H(3A)—O(3)—C(4)—C(3) | −76.3 (13) | C(8)—C(7)—C(12)—H(12) | −180 |
H(3A)—O(3)—C(4)—C(5) | 168.9 (13) | C(7)—C(8)—C(9)—H(9) | 180 |
H(3A)—O(3)—C(4)—H(4) | 48 | H(8)—C(8)—C(9)—C(10) | 180 |
C(11)—N(1)—C(3)—H(3) | −99 | H(8)—C(8)—C(9)—H(9) | 0 |
C(14)—N(1)—C(3)—H(3) | 93 | C(8)—C(9)—C(10)—H(10) | −179 |
C(3)—N(1)—C(14)—H(14A) | −121 | H(9)—C(9)—C(10)—C(13) | −179 |
C(3)—N(1)—C(14)—H(14B) | 117 | H(9)—C(9)—C(10)—H(10) | 1 |
C(11)—N(1)—C(14)—H(14A) | 73 | C(9)—C(10)—C(13)—H(13) | 179 |
C(11)—N(1)—C(14)—H(14B) | −50 | H(10)—C(10)—C(13)—C(12) | 180 |
O(1)—C(1)—C(2)—H(2A) | −48 | H(10)—C(10)—C(13)—H(13) | 0 |
O(1)—C(1)—C(2)—H(2B) | 74 | C(7)—C(12)—C(13)—H(13) | −180 |
C(14)—C(1)—C(2)—H(2A) | 78 | H(12)—C(12)—C(13)—C(10) | −180 |
C(14)—C(1)—C(2)—H(2B) | −159 | H(12)—C(12)—C(13)—H(13) | 0 |
D—H···A | D—H | H···A | D···A | D—H···A |
O3—H3A···O2i | 0.93 (2) | 1.73 (2) | 2.6395 (12) | 164 (2) |
O1—H1A···O3ii | 0.86 (2) | 1.93 (2) | 2.7716 (13) | 167 (19) |
Symmetry codes: (i) x+1, y, z; (ii) −x+1, y−1/2, −z+1/2. |
Experimental details
Crystal data | |
Chemical formula | C14H17NO3 |
Mr | 247.29 |
Crystal system, space group | Orthorhombic, P212121 |
Temperature (K) | 100 |
a, b, c (Å) | 6.6241 (3), 13.6873 (6), 13.9726 (6) |
V (Å3) | 1266.84 (10) |
Z | 4 |
Radiation type | Cu Kα |
µ (mm−1) | 0.74 |
Crystal size (mm) | 0.17 × 0.15 × 0.12 |
Data collection | |
Diffractometer | Bruker Kappa APEXII DUO diffractometer |
Absorption correction | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 26923, 2295, 2290 |
Rint | 0.026 |
(sin θ/λ)max (Å−1) | 0.608 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.026, 0.078, 1.15 |
No. of reflections | 2295 |
No. of parameters | 172 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.17, −0.16 |
Absolute structure | Flack (1983) and Hooft et al. (2008) [Hooft parameter = 0.00(2), (943 Bijvoet pairs)]' |
Absolute structure parameter | 0.00 (16) |
Computer programs: APEX2 (Bruker, 2010), SAINT (Bruker, 2010), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), WinGX (Farrugia, 1999) and PLATON (Spek, 2009), publCIF (Westrip, 2010) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
O3—H3A···O2i | 0.93 (2) | 1.73 (2) | 2.6395 (12) | 164 (2) |
O1—H1A···O3ii | 0.86 (2) | 1.93 (2) | 2.7716 (13) | 167 (19) |
Symmetry codes: (i) x+1, y, z; (ii) −x+1, y−1/2, −z+1/2. |
Acknowledgements
The authors acknowledge the Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP), the Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES) and the Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq) for financial support. FLO and KRLF were supported by fellowships from CAPES and CNPq, respectively. RA and FC are recipients of research fellowships from CNPq.
References
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The title compound can be used as a prototype for the development of new inhibitors of LFA-1 (lymphocyte function-associated antigen 1) with potential application as anti-inflammatory agents (Baumann, 2007). The title compound is a new asymmetric benzyl-pyrrolizidinone which has been synthesized in our laboratory and its crystal structure is presented in this article.
The title compound (Fig. 1) has four stereocenters and was prepared from a Morita-Baylis-Hillman adduct. The dihedral angles H3—C3—C4—H4 = -158° and H4—C4—C5—H5 = 163° show that H atoms 3, 4 and 5 at the two new stereocenters are in a trans-diaxial configuration. These values agree with the coupling constant values obtained for these H atoms in the 1H NMR analysis. The crystal structure is stabilized by intermolecular hydrogen bonds (Tab. 1 & Fig. 2).