organic compounds
7′-(2,5-Dimethoxyphenyl)-1′,3′,5′,6′,7′,7a'-hexahydrodispiro[indan-2,5′-pyrrolo[1,2-c][1,3]thiazole-6′,2′′-indan]-1,3,1′′-trione
aInstitute for Research in Molecular Medicine, Universiti Sains Malaysia, Minden 11800, Penang, Malaysia, and bSchool of Physics, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia
*Correspondence e-mail: arazaki@usm.my
In the title compound, C30H25NO5S, all the five-membered rings are in envelope conformations with the spiro and methylene C atoms as the flap atoms. Intramolecular C—H⋯O interactions stabilize the molecular structure and form S(6) and S(7) ring motifs. The mean plane through the hexahydropyrrolo[1,2-c]thiazole ring [r.m.s deviation of 0.0393 (1) Å] makes dihedral angles of 60.92 (5), 88.33 (4) and 84.12 (4)° with the terminal benzene ring and the mean planes of the mono and di-oxo substituted indan rings, respectively. Molecules are linked by intermolecular C—H⋯O interactions into a three-dimensional network. In addition, C—H⋯π and π–π interactions [centroid-to-centroid distance = 3.4084 (8) Å] further stabilize the crystal structure.
Related literature
For related structures, see: Wei, Ali, Choon et al. (2011); Wei, Ali, Ismail et al. (2011); Wei, Ali, Yoon et al. (2011). For ring conformations, see: Cremer & Pople (1975). For hydrogen-bond motifs, see: Bernstein et al. (1995). For the stability of the temperature controller used for data collection, see: Cosier & Glazer (1986).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2009); cell SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009).
Supporting information
10.1107/S1600536812003169/rz2700sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536812003169/rz2700Isup2.hkl
A mixture of 2-(2,5-dimethoxybenzylidene)-2,3-dihydro-1H-indene (0.001 mol), ninhydrin (0.001 mol) and thiazolidine-4-carboxylic acid (0.002 mol) was dissolved in methanol (10 ml) and refluxed for 4 h. After completion of the reaction as evident from TLC, the mixture was poured into crushed ice. The precipitated solid was filtered, washed and recrystallized from petroleum ether–ethyl acetate mixture (1:1 v/v) to afford the title compound as yellow crystals.
All H atoms were positioned geometrically [C—H = 0.95 and 1.00 Å] and refined using a riding model with Uiso(H) = 1.2 or 1.5Ueq(C). A rotating group model was applied to the methyl groups. Four outliners were omitted from the final
-4 4 6, -1 -3 1, -3 -6 2 and -4 4 7.Data collection: APEX2 (Bruker, 2009); cell
SAINT (Bruker, 2009); data reduction: SAINT (Bruker, 2009); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).Fig. 1. The molecular structure of the title compound, showing 30% probability displacement ellipsoids. Intramolecular hydrogen bonds are shown as dashed lines | |
Fig. 2. The crystal packing of the title compound viewed along the b axis. The H atoms not involved in intermolecular interactions (dashed lines) have been omitted for clarity. |
C30H25NO5S | Z = 2 |
Mr = 511.57 | F(000) = 536 |
Triclinic, P1 | Dx = 1.394 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 9.0425 (4) Å | Cell parameters from 9674 reflections |
b = 11.1127 (5) Å | θ = 2.3–30.7° |
c = 13.3005 (6) Å | µ = 0.18 mm−1 |
α = 68.016 (1)° | T = 100 K |
β = 84.588 (1)° | Plate, yellow |
γ = 79.735 (1)° | 0.36 × 0.19 × 0.10 mm |
V = 1218.95 (9) Å3 |
Bruker SMART APEXII CCD diffractometer | 7546 independent reflections |
Radiation source: fine-focus sealed tube | 6172 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.030 |
ϕ and ω scans | θmax = 30.8°, θmin = 1.7° |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | h = −13→13 |
Tmin = 0.939, Tmax = 0.983 | k = −15→16 |
27399 measured reflections | l = −19→19 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.038 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.106 | H-atom parameters constrained |
S = 1.03 | w = 1/[σ2(Fo2) + (0.0547P)2 + 0.3649P] where P = (Fo2 + 2Fc2)/3 |
7546 reflections | (Δ/σ)max = 0.001 |
336 parameters | Δρmax = 0.46 e Å−3 |
0 restraints | Δρmin = −0.34 e Å−3 |
C30H25NO5S | γ = 79.735 (1)° |
Mr = 511.57 | V = 1218.95 (9) Å3 |
Triclinic, P1 | Z = 2 |
a = 9.0425 (4) Å | Mo Kα radiation |
b = 11.1127 (5) Å | µ = 0.18 mm−1 |
c = 13.3005 (6) Å | T = 100 K |
α = 68.016 (1)° | 0.36 × 0.19 × 0.10 mm |
β = 84.588 (1)° |
Bruker SMART APEXII CCD diffractometer | 7546 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | 6172 reflections with I > 2σ(I) |
Tmin = 0.939, Tmax = 0.983 | Rint = 0.030 |
27399 measured reflections |
R[F2 > 2σ(F2)] = 0.038 | 0 restraints |
wR(F2) = 0.106 | H-atom parameters constrained |
S = 1.03 | Δρmax = 0.46 e Å−3 |
7546 reflections | Δρmin = −0.34 e Å−3 |
336 parameters |
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
S1 | 0.73773 (3) | 0.75887 (3) | 0.32247 (3) | 0.02242 (8) | |
O1 | 0.48652 (10) | 0.81440 (8) | 0.08968 (7) | 0.02018 (17) | |
O2 | 0.13926 (9) | 0.78758 (9) | 0.38401 (7) | 0.01972 (17) | |
O3 | 0.22209 (10) | 0.66773 (8) | 0.08718 (6) | 0.02009 (17) | |
O4 | 0.69120 (10) | 0.08851 (8) | 0.50375 (7) | 0.02352 (18) | |
O5 | 0.42757 (10) | 0.42066 (9) | 0.12125 (7) | 0.02060 (17) | |
N1 | 0.46129 (10) | 0.70280 (9) | 0.33292 (8) | 0.01505 (17) | |
C1 | 0.53549 (13) | 0.81258 (12) | 0.32540 (10) | 0.0197 (2) | |
H1A | 0.5058 | 0.8389 | 0.3887 | 0.024* | |
H1B | 0.5060 | 0.8890 | 0.2586 | 0.024* | |
C2 | 0.71655 (13) | 0.62872 (12) | 0.27699 (10) | 0.0188 (2) | |
H2A | 0.7143 | 0.6611 | 0.1969 | 0.023* | |
H2B | 0.8001 | 0.5546 | 0.3019 | 0.023* | |
C3 | 0.56602 (12) | 0.58616 (11) | 0.32835 (9) | 0.01487 (19) | |
H3A | 0.5821 | 0.5197 | 0.4034 | 0.018* | |
C4 | 0.48564 (12) | 0.53056 (11) | 0.26182 (8) | 0.01420 (19) | |
H4A | 0.5193 | 0.5718 | 0.1844 | 0.017* | |
C5 | 0.31662 (12) | 0.59219 (10) | 0.27073 (8) | 0.01339 (18) | |
C6 | 0.33703 (12) | 0.73236 (11) | 0.26064 (8) | 0.01379 (19) | |
C7 | 0.36942 (12) | 0.82428 (11) | 0.14128 (9) | 0.0156 (2) | |
C8 | 0.24279 (13) | 0.93367 (11) | 0.10817 (9) | 0.0165 (2) | |
C9 | 0.22010 (14) | 1.03660 (12) | 0.00841 (10) | 0.0206 (2) | |
H9A | 0.2887 | 1.0420 | −0.0512 | 0.025* | |
C10 | 0.09331 (15) | 1.13115 (12) | −0.00065 (10) | 0.0229 (2) | |
H10A | 0.0747 | 1.2021 | −0.0679 | 0.028* | |
C11 | −0.00773 (14) | 1.12392 (12) | 0.08755 (10) | 0.0233 (2) | |
H11A | −0.0937 | 1.1896 | 0.0789 | 0.028* | |
C12 | 0.01611 (13) | 1.02212 (12) | 0.18730 (10) | 0.0208 (2) | |
H12A | −0.0514 | 1.0176 | 0.2474 | 0.025* | |
C13 | 0.14256 (13) | 0.92684 (11) | 0.19611 (9) | 0.0167 (2) | |
C14 | 0.19522 (12) | 0.81249 (11) | 0.29325 (9) | 0.01488 (19) | |
C15 | 0.22061 (12) | 0.59216 (11) | 0.18119 (8) | 0.01511 (19) | |
C16 | 0.12391 (12) | 0.49049 (11) | 0.23166 (9) | 0.01496 (19) | |
C17 | 0.03024 (13) | 0.44286 (12) | 0.18221 (9) | 0.0189 (2) | |
H17A | 0.0225 | 0.4761 | 0.1056 | 0.023* | |
C18 | −0.05095 (13) | 0.34581 (12) | 0.24801 (10) | 0.0209 (2) | |
H18A | −0.1146 | 0.3112 | 0.2164 | 0.025* | |
C19 | −0.03949 (13) | 0.29862 (12) | 0.36080 (10) | 0.0196 (2) | |
H19A | −0.0959 | 0.2322 | 0.4048 | 0.024* | |
C20 | 0.05276 (12) | 0.34686 (11) | 0.40993 (9) | 0.0169 (2) | |
H20A | 0.0591 | 0.3147 | 0.4866 | 0.020* | |
C21 | 0.13569 (12) | 0.44365 (11) | 0.34392 (9) | 0.01400 (19) | |
C22 | 0.24062 (12) | 0.51134 (11) | 0.37847 (8) | 0.01415 (19) | |
H22A | 0.3162 | 0.4465 | 0.4285 | 0.017* | |
H22B | 0.1843 | 0.5694 | 0.4148 | 0.017* | |
C23 | 0.52094 (12) | 0.38279 (11) | 0.29094 (9) | 0.01523 (19) | |
C24 | 0.58450 (12) | 0.29594 (11) | 0.38738 (9) | 0.0171 (2) | |
H24A | 0.5980 | 0.3275 | 0.4426 | 0.020* | |
C25 | 0.62912 (12) | 0.16255 (11) | 0.40491 (10) | 0.0183 (2) | |
C26 | 0.61226 (13) | 0.11484 (12) | 0.32496 (10) | 0.0211 (2) | |
H26A | 0.6467 | 0.0252 | 0.3355 | 0.025* | |
C27 | 0.54419 (14) | 0.19992 (12) | 0.22873 (10) | 0.0218 (2) | |
H27A | 0.5302 | 0.1675 | 0.1741 | 0.026* | |
C28 | 0.49688 (13) | 0.33129 (11) | 0.21227 (9) | 0.0175 (2) | |
C29 | 0.75456 (15) | −0.04449 (12) | 0.52243 (12) | 0.0270 (3) | |
H29A | 0.7961 | −0.0853 | 0.5951 | 0.040* | |
H29B | 0.8348 | −0.0474 | 0.4681 | 0.040* | |
H29C | 0.6764 | −0.0923 | 0.5170 | 0.040* | |
C30 | 0.38015 (16) | 0.37160 (14) | 0.04664 (10) | 0.0272 (3) | |
H30A | 0.3236 | 0.4439 | −0.0109 | 0.041* | |
H30B | 0.3159 | 0.3050 | 0.0849 | 0.041* | |
H30C | 0.4684 | 0.3322 | 0.0147 | 0.041* |
U11 | U22 | U33 | U12 | U13 | U23 | |
S1 | 0.01879 (14) | 0.01845 (15) | 0.03543 (17) | −0.00579 (10) | −0.00349 (11) | −0.01403 (12) |
O1 | 0.0222 (4) | 0.0175 (4) | 0.0211 (4) | −0.0063 (3) | 0.0074 (3) | −0.0077 (3) |
O2 | 0.0224 (4) | 0.0204 (4) | 0.0179 (4) | −0.0058 (3) | 0.0050 (3) | −0.0088 (3) |
O3 | 0.0277 (4) | 0.0174 (4) | 0.0149 (4) | −0.0050 (3) | −0.0012 (3) | −0.0048 (3) |
O4 | 0.0283 (4) | 0.0122 (4) | 0.0293 (4) | 0.0013 (3) | −0.0056 (3) | −0.0076 (3) |
O5 | 0.0279 (4) | 0.0197 (4) | 0.0188 (4) | −0.0060 (3) | −0.0003 (3) | −0.0112 (3) |
N1 | 0.0163 (4) | 0.0122 (4) | 0.0198 (4) | −0.0047 (3) | 0.0002 (3) | −0.0085 (3) |
C1 | 0.0189 (5) | 0.0160 (5) | 0.0294 (6) | −0.0068 (4) | 0.0015 (4) | −0.0129 (5) |
C2 | 0.0169 (5) | 0.0157 (5) | 0.0271 (5) | −0.0047 (4) | −0.0001 (4) | −0.0108 (4) |
C3 | 0.0174 (5) | 0.0113 (5) | 0.0178 (5) | −0.0040 (4) | −0.0007 (4) | −0.0066 (4) |
C4 | 0.0162 (5) | 0.0127 (5) | 0.0159 (4) | −0.0053 (4) | 0.0019 (3) | −0.0069 (4) |
C5 | 0.0164 (4) | 0.0115 (5) | 0.0135 (4) | −0.0050 (4) | 0.0010 (3) | −0.0051 (4) |
C6 | 0.0155 (4) | 0.0121 (5) | 0.0148 (4) | −0.0040 (4) | 0.0022 (3) | −0.0058 (4) |
C7 | 0.0201 (5) | 0.0118 (5) | 0.0162 (5) | −0.0057 (4) | 0.0028 (4) | −0.0060 (4) |
C8 | 0.0199 (5) | 0.0120 (5) | 0.0183 (5) | −0.0048 (4) | 0.0016 (4) | −0.0058 (4) |
C9 | 0.0255 (6) | 0.0163 (5) | 0.0196 (5) | −0.0075 (4) | 0.0022 (4) | −0.0048 (4) |
C10 | 0.0290 (6) | 0.0155 (5) | 0.0221 (5) | −0.0043 (4) | −0.0036 (4) | −0.0033 (4) |
C11 | 0.0256 (6) | 0.0179 (6) | 0.0263 (6) | 0.0006 (4) | −0.0039 (5) | −0.0089 (5) |
C12 | 0.0216 (5) | 0.0193 (6) | 0.0226 (5) | −0.0013 (4) | 0.0006 (4) | −0.0099 (5) |
C13 | 0.0190 (5) | 0.0135 (5) | 0.0188 (5) | −0.0042 (4) | 0.0010 (4) | −0.0068 (4) |
C14 | 0.0164 (5) | 0.0136 (5) | 0.0173 (5) | −0.0054 (4) | 0.0019 (4) | −0.0078 (4) |
C15 | 0.0178 (5) | 0.0137 (5) | 0.0153 (4) | −0.0030 (4) | 0.0002 (4) | −0.0068 (4) |
C16 | 0.0155 (5) | 0.0143 (5) | 0.0168 (5) | −0.0034 (4) | 0.0000 (4) | −0.0071 (4) |
C17 | 0.0184 (5) | 0.0213 (6) | 0.0205 (5) | −0.0034 (4) | −0.0018 (4) | −0.0111 (4) |
C18 | 0.0174 (5) | 0.0208 (6) | 0.0299 (6) | −0.0051 (4) | −0.0015 (4) | −0.0143 (5) |
C19 | 0.0161 (5) | 0.0136 (5) | 0.0294 (6) | −0.0049 (4) | 0.0005 (4) | −0.0073 (4) |
C20 | 0.0160 (5) | 0.0134 (5) | 0.0202 (5) | −0.0035 (4) | −0.0001 (4) | −0.0046 (4) |
C21 | 0.0134 (4) | 0.0120 (5) | 0.0174 (5) | −0.0028 (4) | 0.0003 (3) | −0.0061 (4) |
C22 | 0.0170 (5) | 0.0136 (5) | 0.0133 (4) | −0.0062 (4) | 0.0002 (3) | −0.0049 (4) |
C23 | 0.0153 (4) | 0.0134 (5) | 0.0196 (5) | −0.0051 (4) | 0.0031 (4) | −0.0085 (4) |
C24 | 0.0175 (5) | 0.0142 (5) | 0.0222 (5) | −0.0045 (4) | 0.0012 (4) | −0.0092 (4) |
C25 | 0.0166 (5) | 0.0138 (5) | 0.0256 (5) | −0.0042 (4) | 0.0014 (4) | −0.0081 (4) |
C26 | 0.0206 (5) | 0.0146 (5) | 0.0319 (6) | −0.0050 (4) | 0.0030 (4) | −0.0127 (5) |
C27 | 0.0248 (6) | 0.0196 (6) | 0.0279 (6) | −0.0067 (4) | 0.0030 (4) | −0.0159 (5) |
C28 | 0.0187 (5) | 0.0172 (5) | 0.0201 (5) | −0.0059 (4) | 0.0025 (4) | −0.0101 (4) |
C29 | 0.0288 (6) | 0.0130 (6) | 0.0360 (7) | 0.0018 (5) | −0.0007 (5) | −0.0077 (5) |
C30 | 0.0384 (7) | 0.0295 (7) | 0.0210 (5) | −0.0110 (6) | −0.0008 (5) | −0.0149 (5) |
S1—C2 | 1.8083 (12) | C11—C12 | 1.3891 (17) |
S1—C1 | 1.8213 (12) | C11—H11A | 0.9500 |
O1—C7 | 1.2174 (13) | C12—C13 | 1.3939 (16) |
O2—C14 | 1.2142 (13) | C12—H12A | 0.9500 |
O3—C15 | 1.2180 (13) | C13—C14 | 1.4771 (16) |
O4—C25 | 1.3729 (14) | C15—C16 | 1.4715 (15) |
O4—C29 | 1.4229 (15) | C16—C21 | 1.3928 (14) |
O5—C28 | 1.3660 (14) | C16—C17 | 1.3985 (15) |
O5—C30 | 1.4264 (14) | C17—C18 | 1.3864 (17) |
N1—C6 | 1.4595 (14) | C17—H17A | 0.9500 |
N1—C1 | 1.4617 (14) | C18—C19 | 1.3990 (17) |
N1—C3 | 1.4802 (14) | C18—H18A | 0.9500 |
C1—H1A | 0.9900 | C19—C20 | 1.3909 (16) |
C1—H1B | 0.9900 | C19—H19A | 0.9500 |
C2—C3 | 1.5347 (16) | C20—C21 | 1.3951 (15) |
C2—H2A | 0.9900 | C20—H20A | 0.9500 |
C2—H2B | 0.9900 | C21—C22 | 1.5075 (14) |
C3—C4 | 1.5439 (14) | C22—H22A | 0.9900 |
C3—H3A | 1.0000 | C22—H22B | 0.9900 |
C4—C23 | 1.5195 (15) | C23—C24 | 1.3862 (16) |
C4—C5 | 1.5724 (15) | C23—C28 | 1.4162 (14) |
C4—H4A | 1.0000 | C24—C25 | 1.4001 (16) |
C5—C15 | 1.5387 (14) | C24—H24A | 0.9500 |
C5—C22 | 1.5503 (15) | C25—C26 | 1.3845 (16) |
C5—C6 | 1.5555 (15) | C26—C27 | 1.3951 (18) |
C6—C14 | 1.5501 (15) | C26—H26A | 0.9500 |
C6—C7 | 1.5666 (15) | C27—C28 | 1.3848 (16) |
C7—C8 | 1.4768 (15) | C27—H27A | 0.9500 |
C8—C9 | 1.3937 (16) | C29—H29A | 0.9800 |
C8—C13 | 1.3977 (15) | C29—H29B | 0.9800 |
C9—C10 | 1.3910 (17) | C29—H29C | 0.9800 |
C9—H9A | 0.9500 | C30—H30A | 0.9800 |
C10—C11 | 1.4039 (18) | C30—H30B | 0.9800 |
C10—H10A | 0.9500 | C30—H30C | 0.9800 |
C2—S1—C1 | 92.41 (5) | C8—C13—C14 | 110.52 (10) |
C25—O4—C29 | 117.86 (10) | O2—C14—C13 | 125.67 (10) |
C28—O5—C30 | 117.49 (10) | O2—C14—C6 | 125.75 (10) |
C6—N1—C1 | 116.85 (9) | C13—C14—C6 | 108.55 (9) |
C6—N1—C3 | 109.94 (8) | O3—C15—C16 | 127.44 (10) |
C1—N1—C3 | 114.03 (9) | O3—C15—C5 | 124.96 (10) |
N1—C1—S1 | 107.80 (8) | C16—C15—C5 | 107.52 (9) |
N1—C1—H1A | 110.1 | C21—C16—C17 | 121.64 (10) |
S1—C1—H1A | 110.1 | C21—C16—C15 | 109.33 (9) |
N1—C1—H1B | 110.1 | C17—C16—C15 | 129.03 (10) |
S1—C1—H1B | 110.1 | C18—C17—C16 | 118.22 (10) |
H1A—C1—H1B | 108.5 | C18—C17—H17A | 120.9 |
C3—C2—S1 | 104.63 (7) | C16—C17—H17A | 120.9 |
C3—C2—H2A | 110.8 | C17—C18—C19 | 120.29 (10) |
S1—C2—H2A | 110.8 | C17—C18—H18A | 119.9 |
C3—C2—H2B | 110.8 | C19—C18—H18A | 119.9 |
S1—C2—H2B | 110.8 | C20—C19—C18 | 121.43 (11) |
H2A—C2—H2B | 108.9 | C20—C19—H19A | 119.3 |
N1—C3—C2 | 108.88 (9) | C18—C19—H19A | 119.3 |
N1—C3—C4 | 105.18 (8) | C19—C20—C21 | 118.44 (10) |
C2—C3—C4 | 113.74 (9) | C19—C20—H20A | 120.8 |
N1—C3—H3A | 109.6 | C21—C20—H20A | 120.8 |
C2—C3—H3A | 109.6 | C16—C21—C20 | 119.98 (10) |
C4—C3—H3A | 109.6 | C16—C21—C22 | 112.13 (9) |
C23—C4—C3 | 115.74 (9) | C20—C21—C22 | 127.88 (10) |
C23—C4—C5 | 117.58 (9) | C21—C22—C5 | 104.02 (8) |
C3—C4—C5 | 102.55 (8) | C21—C22—H22A | 111.0 |
C23—C4—H4A | 106.7 | C5—C22—H22A | 111.0 |
C3—C4—H4A | 106.7 | C21—C22—H22B | 111.0 |
C5—C4—H4A | 106.7 | C5—C22—H22B | 111.0 |
C15—C5—C22 | 104.83 (8) | H22A—C22—H22B | 109.0 |
C15—C5—C6 | 113.28 (9) | C24—C23—C28 | 117.81 (10) |
C22—C5—C6 | 115.15 (8) | C24—C23—C4 | 123.85 (9) |
C15—C5—C4 | 112.77 (8) | C28—C23—C4 | 118.21 (10) |
C22—C5—C4 | 111.13 (8) | C23—C24—C25 | 121.22 (10) |
C6—C5—C4 | 99.96 (8) | C23—C24—H24A | 119.4 |
N1—C6—C14 | 112.51 (8) | C25—C24—H24A | 119.4 |
N1—C6—C5 | 101.36 (8) | O4—C25—C26 | 124.86 (11) |
C14—C6—C5 | 114.44 (9) | O4—C25—C24 | 114.81 (10) |
N1—C6—C7 | 113.84 (9) | C26—C25—C24 | 120.32 (11) |
C14—C6—C7 | 101.90 (8) | C25—C26—C27 | 119.25 (11) |
C5—C6—C7 | 113.32 (8) | C25—C26—H26A | 120.4 |
O1—C7—C8 | 125.97 (10) | C27—C26—H26A | 120.4 |
O1—C7—C6 | 125.21 (10) | C28—C27—C26 | 120.45 (10) |
C8—C7—C6 | 108.37 (9) | C28—C27—H27A | 119.8 |
C9—C8—C13 | 121.07 (11) | C26—C27—H27A | 119.8 |
C9—C8—C7 | 128.86 (10) | O5—C28—C27 | 124.19 (10) |
C13—C8—C7 | 109.99 (10) | O5—C28—C23 | 114.99 (10) |
C10—C9—C8 | 117.57 (11) | C27—C28—C23 | 120.81 (11) |
C10—C9—H9A | 121.2 | O4—C29—H29A | 109.5 |
C8—C9—H9A | 121.2 | O4—C29—H29B | 109.5 |
C9—C10—C11 | 121.34 (11) | H29A—C29—H29B | 109.5 |
C9—C10—H10A | 119.3 | O4—C29—H29C | 109.5 |
C11—C10—H10A | 119.3 | H29A—C29—H29C | 109.5 |
C12—C11—C10 | 120.99 (11) | H29B—C29—H29C | 109.5 |
C12—C11—H11A | 119.5 | O5—C30—H30A | 109.5 |
C10—C11—H11A | 119.5 | O5—C30—H30B | 109.5 |
C11—C12—C13 | 117.65 (11) | H30A—C30—H30B | 109.5 |
C11—C12—H12A | 121.2 | O5—C30—H30C | 109.5 |
C13—C12—H12A | 121.2 | H30A—C30—H30C | 109.5 |
C12—C13—C8 | 121.37 (11) | H30B—C30—H30C | 109.5 |
C12—C13—C14 | 128.06 (10) | ||
C6—N1—C1—S1 | −134.10 (8) | C8—C13—C14—O2 | 173.06 (11) |
C3—N1—C1—S1 | −3.99 (11) | C12—C13—C14—C6 | 177.49 (11) |
C2—S1—C1—N1 | 21.48 (9) | C8—C13—C14—C6 | −5.04 (12) |
C1—S1—C2—C3 | −31.84 (8) | N1—C6—C14—O2 | −48.10 (15) |
C6—N1—C3—C2 | 113.37 (10) | C5—C6—C14—O2 | 66.90 (14) |
C1—N1—C3—C2 | −20.09 (12) | C7—C6—C14—O2 | −170.40 (11) |
C6—N1—C3—C4 | −8.87 (11) | N1—C6—C14—C13 | 129.99 (9) |
C1—N1—C3—C4 | −142.33 (9) | C5—C6—C14—C13 | −115.01 (10) |
S1—C2—C3—N1 | 34.39 (10) | C7—C6—C14—C13 | 7.69 (11) |
S1—C2—C3—C4 | 151.30 (8) | C22—C5—C15—O3 | 162.88 (11) |
N1—C3—C4—C23 | −149.38 (9) | C6—C5—C15—O3 | 36.55 (15) |
C2—C3—C4—C23 | 91.57 (11) | C4—C5—C15—O3 | −76.08 (14) |
N1—C3—C4—C5 | −20.04 (10) | C22—C5—C15—C16 | −14.21 (11) |
C2—C3—C4—C5 | −139.09 (9) | C6—C5—C15—C16 | −140.54 (9) |
C23—C4—C5—C15 | −71.71 (12) | C4—C5—C15—C16 | 106.83 (10) |
C3—C4—C5—C15 | 160.10 (9) | O3—C15—C16—C21 | −168.21 (11) |
C23—C4—C5—C22 | 45.66 (12) | C5—C15—C16—C21 | 8.79 (12) |
C3—C4—C5—C22 | −82.53 (10) | O3—C15—C16—C17 | 11.16 (19) |
C23—C4—C5—C6 | 167.69 (9) | C5—C15—C16—C17 | −171.85 (11) |
C3—C4—C5—C6 | 39.51 (9) | C21—C16—C17—C18 | −0.56 (17) |
C1—N1—C6—C14 | −71.05 (12) | C15—C16—C17—C18 | −179.85 (11) |
C3—N1—C6—C14 | 156.95 (9) | C16—C17—C18—C19 | 0.60 (17) |
C1—N1—C6—C5 | 166.27 (9) | C17—C18—C19—C20 | −0.08 (18) |
C3—N1—C6—C5 | 34.26 (10) | C18—C19—C20—C21 | −0.51 (17) |
C1—N1—C6—C7 | 44.24 (12) | C17—C16—C21—C20 | −0.02 (16) |
C3—N1—C6—C7 | −87.76 (11) | C15—C16—C21—C20 | 179.40 (10) |
C15—C5—C6—N1 | −164.96 (8) | C17—C16—C21—C22 | −178.82 (10) |
C22—C5—C6—N1 | 74.39 (10) | C15—C16—C21—C22 | 0.60 (12) |
C4—C5—C6—N1 | −44.74 (9) | C19—C20—C21—C16 | 0.55 (16) |
C15—C5—C6—C14 | 73.69 (11) | C19—C20—C21—C22 | 179.14 (10) |
C22—C5—C6—C14 | −46.96 (12) | C16—C21—C22—C5 | −9.50 (12) |
C4—C5—C6—C14 | −166.09 (8) | C20—C21—C22—C5 | 171.82 (10) |
C15—C5—C6—C7 | −42.58 (12) | C15—C5—C22—C21 | 13.99 (11) |
C22—C5—C6—C7 | −163.23 (9) | C6—C5—C22—C21 | 139.16 (9) |
C4—C5—C6—C7 | 77.64 (10) | C4—C5—C22—C21 | −108.12 (9) |
N1—C6—C7—O1 | 43.42 (15) | C3—C4—C23—C24 | 17.73 (15) |
C14—C6—C7—O1 | 164.81 (11) | C5—C4—C23—C24 | −103.87 (12) |
C5—C6—C7—O1 | −71.73 (14) | C3—C4—C23—C28 | −157.93 (10) |
N1—C6—C7—C8 | −129.22 (9) | C5—C4—C23—C28 | 80.47 (12) |
C14—C6—C7—C8 | −7.83 (11) | C28—C23—C24—C25 | 2.52 (16) |
C5—C6—C7—C8 | 115.62 (10) | C4—C23—C24—C25 | −173.15 (10) |
O1—C7—C8—C9 | 9.64 (19) | C29—O4—C25—C26 | 5.59 (17) |
C6—C7—C8—C9 | −177.79 (11) | C29—O4—C25—C24 | −173.03 (11) |
O1—C7—C8—C13 | −167.21 (11) | C23—C24—C25—O4 | 179.56 (10) |
C6—C7—C8—C13 | 5.37 (12) | C23—C24—C25—C26 | 0.87 (17) |
C13—C8—C9—C10 | −0.76 (17) | O4—C25—C26—C27 | 178.59 (11) |
C7—C8—C9—C10 | −177.30 (11) | C24—C25—C26—C27 | −2.86 (18) |
C8—C9—C10—C11 | 0.45 (18) | C25—C26—C27—C28 | 1.39 (18) |
C9—C10—C11—C12 | 0.35 (19) | C30—O5—C28—C27 | 10.24 (17) |
C10—C11—C12—C13 | −0.82 (18) | C30—O5—C28—C23 | −170.86 (10) |
C11—C12—C13—C8 | 0.51 (17) | C26—C27—C28—O5 | −179.08 (11) |
C11—C12—C13—C14 | 177.73 (11) | C26—C27—C28—C23 | 2.08 (18) |
C9—C8—C13—C12 | 0.29 (17) | C24—C23—C28—O5 | 177.07 (10) |
C7—C8—C13—C12 | 177.43 (10) | C4—C23—C28—O5 | −7.01 (15) |
C9—C8—C13—C14 | −177.38 (10) | C24—C23—C28—C27 | −3.99 (16) |
C7—C8—C13—C14 | −0.24 (13) | C4—C23—C28—C27 | 171.93 (10) |
C12—C13—C14—O2 | −4.42 (19) |
Cg1 is the centroid of the C16–C21 ring. |
D—H···A | D—H | H···A | D···A | D—H···A |
C2—H2A···O1 | 0.99 | 2.58 | 3.2234 (15) | 123 |
C4—H4A···O1 | 1.00 | 2.49 | 3.1289 (15) | 122 |
C22—H22B···O2 | 0.99 | 2.27 | 3.0697 (16) | 137 |
C11—H11A···O3i | 0.95 | 2.44 | 3.1210 (15) | 129 |
C20—H20A···O2ii | 0.95 | 2.48 | 3.1176 (14) | 124 |
C1—H1A···O4iii | 0.99 | 2.40 | 3.2806 (16) | 148 |
C30—H30C···O1iv | 0.98 | 2.47 | 3.2433 (18) | 136 |
C2—H2B···Cg1v | 0.99 | 2.58 | 3.5224 (14) | 160 |
Symmetry codes: (i) −x, −y+2, −z; (ii) −x, −y+1, −z+1; (iii) −x+1, −y+1, −z+1; (iv) −x+1, −y+1, −z; (v) x+1, y, z. |
Experimental details
Crystal data | |
Chemical formula | C30H25NO5S |
Mr | 511.57 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 100 |
a, b, c (Å) | 9.0425 (4), 11.1127 (5), 13.3005 (6) |
α, β, γ (°) | 68.016 (1), 84.588 (1), 79.735 (1) |
V (Å3) | 1218.95 (9) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.18 |
Crystal size (mm) | 0.36 × 0.19 × 0.10 |
Data collection | |
Diffractometer | Bruker SMART APEXII CCD diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2009) |
Tmin, Tmax | 0.939, 0.983 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 27399, 7546, 6172 |
Rint | 0.030 |
(sin θ/λ)max (Å−1) | 0.721 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.038, 0.106, 1.03 |
No. of reflections | 7546 |
No. of parameters | 336 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.46, −0.34 |
Computer programs: APEX2 (Bruker, 2009), SAINT (Bruker, 2009), SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).
Cg1 is the centroid of the C16–C21 ring. |
D—H···A | D—H | H···A | D···A | D—H···A |
C2—H2A···O1 | 0.9900 | 2.5800 | 3.2234 (15) | 123.00 |
C4—H4A···O1 | 1.0000 | 2.4900 | 3.1289 (15) | 122.00 |
C22—H22B···O2 | 0.9900 | 2.2700 | 3.0697 (16) | 137.00 |
C11—H11A···O3i | 0.9500 | 2.4400 | 3.1210 (15) | 129.00 |
C20—H20A···O2ii | 0.9500 | 2.4800 | 3.1176 (14) | 124.00 |
C1—H1A···O4iii | 0.9900 | 2.4000 | 3.2806 (16) | 148.00 |
C30—H30C···O1iv | 0.9800 | 2.4700 | 3.2433 (18) | 136.00 |
C2—H2B···Cg1v | 0.9900 | 2.5800 | 3.5224 (14) | 160.00 |
Symmetry codes: (i) −x, −y+2, −z; (ii) −x, −y+1, −z+1; (iii) −x+1, −y+1, −z+1; (iv) −x+1, −y+1, −z; (v) x+1, y, z. |
Footnotes
‡Thomson Reuters ResearcherID: A-5599-2009.
Acknowledgements
The authors thank the Malaysian Government and Universiti Sains Malaysia for Research University grants Nos. 1001/PFIZIK/811151 and 1001/PSK/8620012. The authors are also grateful to Pharmacogenetic and Novel Therapeutic Research, Institute for Research in Molecular Medicine, Universiti Sains Malaysia.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
As part of our ongoing search for novel heterocyclic compounds with antitubercular activity (Wei, Ali, Choon et al., 2011; Wei, Ali, Ismail et al., 2011; Wei, Ali, Yoon et al., 2011) our group has synthesized the title compound as described below.
In the molecular structure (Fig. 1), all five-membered rings are in envelope conformation with puckering parameters (Cremer & Pople, 1975) Q = 0.3813 (11) Å and ϕ = 152.84 (18)° with atom C2 at the flap for the thiazolidine ring (S1/C1/N1/C3/C2), Q = 0.4536 (12) Å and ϕ = 296.92 (15)° with atom C5 at the flap for the pyrrolidine ring (N1/C3–C6), Q = 0.1467 (12) Å and ϕ = 357.9 (5)° with atom C5 at the flap for the cyclopentane ring (C5/C15/C16/C21/C22) and Q = 0.0816 (13) Å and ϕ= 1.5 (9)° with atom C6 at the flap for the cyclopentene ring (C6–C8/C13/C14). The intramolecular C2—H2A···O1, C4—H4A···O1 and C22—H22B···O2 hydrogen bonds (Table 1) stabilize the molecular structure and form S(6) and S(7) ring motifs (Bernstein et al., 1995). In addition, the mean plane through the hexahydropyrrolo[1,2-c]thiazole ring (S1/N1/C1–C6) makes dihedral angles of 60.92 (5), 88.33 (4) and 84.12 (4)° with the terminal benzene ring (C23–C28) and the mean plane of the two 2,3-dihydro-1H-indene rings (C5/C15–C22, C6–C14), respectively. The bond lengths and angles are within normal ranges and comparable to related structures (Wei, Ali, Choon et al., 2011; Wei, Ali, Ismail et al., 2011; Wei, Ali, Yoon et al., 2011).
The crystal packing is shown in Fig. 2. The molecules are linked by the intermolecular C11—H11A···O3, C20—H20A···O2, C1—H1A···O4 and C30—H30C···O1 interactions (Table 1) into three-dimensional network. In addition, the crystal structure is further stabilized by an intermolecular C2—H2B···Cg1 (Table 1) interactions (Cg1 is the centroid of the C16–C22 ring). π–π interactions are also observed with centroid to centroid distance Cg2···Cg3 = 3.4084 (8) Å [Cg2 and Cg3 are the centroids of the cyclopentane ring (C5/C15/C16/C21/C22) and cyclopentene ring (C6–C8/C13/C14), respectively].