metal-organic compounds
catena-Poly[[diiodidomercury(II)]-μ2-2-aminopyrazine-κ2N1:N4]
aDepartment of Chemistry, Omidieh Branch, Islamic Azad University, Omidieh, Iran, and bDepartment of Chemistry, Mahshahr Branch, Islamic Azad University, Mahshar, Iran
*Correspondence e-mail: sadif_shirvan1@yahoo.com
In the crystal of the title polymeric compound, [HgI2(C4H5N3)]n, the HgII cation is located on a twofold rotation axis and is coordinated by two I− anions and two 2-aminopyrazine ligands in a distorted HgI2N2 tetrahedral geometry. In the crystal, the 2-aminopyrazine ligand is equally disordered over two positions about an inversion center, and bridges the HgII cations with pyrazine N atoms to form a polymeric chain running along the c axis. In the polymeric chain, the amino groups link to the coordinated I− anions via intermolecular N—H⋯I hydrogen bonds.
Related literature
For related structures, see: Sun et al. (2009); Pagola et al. (2008); Boonmak et al. (2010); Gao & Ng (2011); Goher et al. (2008).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2007); cell SAINT (Bruker, 2007); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: WinGX (Farrugia, 1999).
Supporting information
10.1107/S1600536812006149/xu5467sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536812006149/xu5467Isup2.hkl
For the preparation of the title compound, a solution of 2-aminopyrazine (0.15 g, 1.50 mmol) in methanol (10 ml) was added to a solution of HgI2 (0.55 g, 1.50 mmol) in methanol (10 ml) and the resulting colorless solution was stirred for 15 min at room temperature. This solution was left to evaporate slowly at room temperature. After one week, colorless needle crystals of the title compound were isolated (yield 0.63 g, 76.4%).
H atoms were positioned geometrically with C—H = 0.93 and N—H = 0.86 Å, and constrained to ride on their parent atoms with Uiso(H) = 1.2Ueq(C,N). In the crystal, the 2-aminopyrazine ring is equqlly disordered over two positions about an inversion center.
Data collection: APEX2 (Bruker, 2007); cell
SAINT (Bruker, 2007); data reduction: SAINT (Bruker, 2007); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: WinGX (Farrugia, 1999).[HgI2(C4H5N3)] | F(000) = 944 |
Mr = 549.50 | Dx = 3.701 Mg m−3 |
Monoclinic, C2/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -C 2yc | Cell parameters from 2648 reflections |
a = 15.3389 (19) Å | θ = 2.7–26.0° |
b = 6.8791 (8) Å | µ = 21.81 mm−1 |
c = 9.6239 (11) Å | T = 298 K |
β = 103.828 (10)° | Needle, colorless |
V = 986.1 (2) Å3 | 0.50 × 0.05 × 0.04 mm |
Z = 4 |
Bruker APEXII CCD area-detector diffractometer | 933 independent reflections |
Radiation source: fine-focus sealed tube | 911 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.173 |
ω scans | θmax = 26.0°, θmin = 2.7° |
Absorption correction: multi-scan (SADABS; Bruker, 2001) | h = −18→18 |
Tmin = 0.275, Tmax = 0.417 | k = −8→8 |
2648 measured reflections | l = −11→8 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.083 | H-atom parameters constrained |
wR(F2) = 0.224 | w = 1/[σ2(Fo2) + (0.1405P)2 + 17.0935P] where P = (Fo2 + 2Fc2)/3 |
S = 1.08 | (Δ/σ)max = 0.002 |
933 reflections | Δρmax = 2.67 e Å−3 |
52 parameters | Δρmin = −2.69 e Å−3 |
0 restraints | Extinction correction: SHELXTL (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.015 (2) |
[HgI2(C4H5N3)] | V = 986.1 (2) Å3 |
Mr = 549.50 | Z = 4 |
Monoclinic, C2/c | Mo Kα radiation |
a = 15.3389 (19) Å | µ = 21.81 mm−1 |
b = 6.8791 (8) Å | T = 298 K |
c = 9.6239 (11) Å | 0.50 × 0.05 × 0.04 mm |
β = 103.828 (10)° |
Bruker APEXII CCD area-detector diffractometer | 933 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2001) | 911 reflections with I > 2σ(I) |
Tmin = 0.275, Tmax = 0.417 | Rint = 0.173 |
2648 measured reflections |
R[F2 > 2σ(F2)] = 0.083 | 0 restraints |
wR(F2) = 0.224 | H-atom parameters constrained |
S = 1.08 | w = 1/[σ2(Fo2) + (0.1405P)2 + 17.0935P] where P = (Fo2 + 2Fc2)/3 |
933 reflections | Δρmax = 2.67 e Å−3 |
52 parameters | Δρmin = −2.69 e Å−3 |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
C1 | 0.0725 (10) | 0.383 (2) | 0.5415 (17) | 0.042 (3) | |
H1 | 0.1234 | 0.3063 | 0.5710 | 0.050* | |
C2 | −0.0746 (11) | 0.455 (2) | 0.542 (2) | 0.044 (3) | |
H2C | −0.1274 | 0.4240 | 0.5694 | 0.054* | 0.50 |
N1 | −0.0046 (8) | 0.3371 (17) | 0.5809 (12) | 0.040 (2) | |
N2 | −0.154 (2) | 0.409 (5) | 0.578 (4) | 0.059 (8) | 0.50 |
H2A | −0.1586 | 0.3048 | 0.6251 | 0.071* | 0.50 |
H2B | −0.1999 | 0.4856 | 0.5531 | 0.071* | 0.50 |
Hg1 | 0.0000 | 0.05992 (11) | 0.7500 | 0.0451 (6) | |
I1 | 0.16288 (9) | −0.07523 (19) | 0.76493 (17) | 0.0629 (7) |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.038 (7) | 0.040 (7) | 0.051 (7) | 0.005 (6) | 0.016 (6) | 0.008 (7) |
C2 | 0.034 (7) | 0.046 (8) | 0.055 (9) | −0.003 (5) | 0.016 (6) | 0.005 (6) |
N1 | 0.039 (6) | 0.035 (5) | 0.050 (6) | 0.002 (4) | 0.018 (5) | 0.004 (5) |
N2 | 0.054 (17) | 0.062 (17) | 0.070 (17) | 0.020 (14) | 0.032 (15) | 0.034 (14) |
Hg1 | 0.0390 (8) | 0.0411 (8) | 0.0576 (8) | 0.000 | 0.0164 (5) | 0.000 |
I1 | 0.0484 (10) | 0.0655 (10) | 0.0793 (11) | 0.0199 (5) | 0.0241 (7) | 0.0154 (5) |
C1—N1 | 1.363 (19) | N1—Hg1 | 2.497 (11) |
C1—C2i | 1.38 (2) | N2—H2A | 0.8600 |
C1—H1 | 0.9300 | N2—H2B | 0.8600 |
C2—N1 | 1.33 (2) | Hg1—I1ii | 2.6372 (13) |
C2—H2C | 0.9300 | Hg1—I1 | 2.6373 (13) |
C2—C1i | 1.38 (2) | Hg1—N1ii | 2.497 (11) |
C2—N2 | 1.38 (4) | ||
N1—C1—C2i | 119.6 (14) | C1—N1—Hg1 | 117.9 (10) |
N1—C1—H1 | 120.2 | C2—N2—H2A | 120.0 |
C2i—C1—H1 | 120.2 | C2—N2—H2B | 120.0 |
C1i—C2—H2C | 119.0 | H2A—N2—H2B | 120.0 |
N1i—C2—H2C | 149.0 | N1ii—Hg1—N1 | 80.4 (5) |
N1—C2—C1i | 121.6 (15) | N1ii—Hg1—I1ii | 100.6 (3) |
N1—C2—N2 | 120.0 (17) | N1—Hg1—I1ii | 110.8 (3) |
C1i—C2—N2 | 118.2 (18) | N1ii—Hg1—I1 | 110.8 (3) |
C2—N1—C1 | 118.6 (13) | N1—Hg1—I1 | 100.6 (3) |
C2—N1—Hg1 | 122.9 (10) | I1ii—Hg1—I1 | 138.71 (7) |
C1i—C2—N1—C1 | 3 (3) | C2—N1—Hg1—N1ii | −68.8 (12) |
N2—C2—N1—C1 | 179 (2) | C1—N1—Hg1—N1ii | 102.6 (12) |
C1i—C2—N1—Hg1 | 174.4 (13) | C2—N1—Hg1—I1ii | 29.0 (13) |
N2—C2—N1—Hg1 | −10 (3) | C1—N1—Hg1—I1ii | −159.7 (10) |
C2i—C1—N1—C2 | −3 (3) | C2—N1—Hg1—I1 | −178.4 (12) |
C2i—C1—N1—Hg1 | −174.8 (12) | C1—N1—Hg1—I1 | −7.0 (11) |
Symmetry codes: (i) −x, −y+1, −z+1; (ii) −x, y, −z+3/2. |
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2A···I1ii | 0.86 | 2.83 | 3.67 (3) | 169 |
Symmetry code: (ii) −x, y, −z+3/2. |
Experimental details
Crystal data | |
Chemical formula | [HgI2(C4H5N3)] |
Mr | 549.50 |
Crystal system, space group | Monoclinic, C2/c |
Temperature (K) | 298 |
a, b, c (Å) | 15.3389 (19), 6.8791 (8), 9.6239 (11) |
β (°) | 103.828 (10) |
V (Å3) | 986.1 (2) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 21.81 |
Crystal size (mm) | 0.50 × 0.05 × 0.04 |
Data collection | |
Diffractometer | Bruker APEXII CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2001) |
Tmin, Tmax | 0.275, 0.417 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 2648, 933, 911 |
Rint | 0.173 |
(sin θ/λ)max (Å−1) | 0.617 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.083, 0.224, 1.08 |
No. of reflections | 933 |
No. of parameters | 52 |
H-atom treatment | H-atom parameters constrained |
w = 1/[σ2(Fo2) + (0.1405P)2 + 17.0935P] where P = (Fo2 + 2Fc2)/3 | |
Δρmax, Δρmin (e Å−3) | 2.67, −2.69 |
Computer programs: APEX2 (Bruker, 2007), SAINT (Bruker, 2007), SHELXTL (Sheldrick, 2008), ORTEP-3 for Windows (Farrugia, 1997), WinGX (Farrugia, 1999).
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2A···I1i | 0.86 | 2.83 | 3.67 (3) | 169 |
Symmetry code: (i) −x, y, −z+3/2. |
Acknowledgements
We are grateful to the Islamic Azad University, Omidieh Branch, for financial support.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
2-Aminopyrazine is a good ligand and numerous complexes with 2-aminopyrazine have been prepared, such as that of silver (Sun et al., 2009), copper (Pagola et al., 2008), cobalt, iron and cadmium (Boonmak et al., 2010) and zinc (Gao & Ng, 2011; Goher et al., 2008). Here, we report the synthesis and structure of the title compound.
The asymmetric unit of the title compound, (Fig. 1), contains one half molecule. The HgII atom is four-coordinated in a distorted tetrahedral configuration by two N atoms from two 2-aminopyrazine and two I atoms. The Hgd-I and Hg—N bond lengths angles are collected in Table 1.
Intermolecular N—H···I hydrogen bonds (Table 2) seem to be effective in the stabilization of the polymeric structure (Fig. 2).