metal-organic compounds
trans-Bis(5-amino-1,3,4-thiadiazol-2-thiolato-κS2)bis(triphenylphosphane-κP)palladium(II) dimethyl sulfoxide disolvate hemihydrate
aInstituto de Química, Universidad Nacional Autónoma de México, Circuito exterior, Ciudad Universitaria, México, DF 04510, Mexico, and bCiencias Básicas e Ingeniería, Recursos de la Tierra, Universidad Autónoma, Metropolitana. Av. Hidalgo Poniente, La Estación Lerma, Lerma de Villada, Estado de México, CP 52006, Mexico
*Correspondence e-mail: rrm@uaem.mx
The title complex, [Pd(C2H2N3S2)2(C18H15P)2]·2C2H6OS·0.5H2O, was obtained from the reaction of trans-[(Ph3P)2PdCl2] with 5-amino-1,3,4-thiadiazole-2-thione (SSNH2) in a 2:1 molar ratio. The PdII atom, located in a crystallographic center of symmetry, has a square-planar geometry with two triphenylphosphine P-coordinated molecules and two SSNH2 ligands with the S atoms in a trans conformation. The latter ligand exhibits N—H⋯N hydrogen-bonding contacts formed by the amino group with the thiadiazole ring, generating a chain along the c axis. The contains one half of the complex molecule along with disordered dimethyl sulfoxide and water molecules.
Related literature
For background to the design and synthesis of ligands that contain efficient metal coordination sites and hydrogen-bonding functionalities, see: Beatty (2001). The SSNH2 (5-amino-1,3,4-thiadiazole-2-thiol) ligand exists in the thione and thiol forms and can converted into the thiolate form depending on the affinity of the metal, see: Tzeng et al. (1999). For SSNH2 acting as a ligand and as auxiliary in the construction of hydrogen bonds in coordination compounds with PdII, see: Tzeng, Lee et al. (2004), with PtII, see: Tannai et al. (2006), with CdII, see: Gao et al. (2009) and with AuI, see: Tzeng et al. (1999); Tzeng, Huang et al. (2004). For the thiolate form, see: Downie et al. (1972).
Experimental
Crystal data
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Data collection
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Refinement
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Data collection: SMART (Bruker, 2007); cell SAINT (Bruker, 2007); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL.
Supporting information
10.1107/S1600536812011555/br2190sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536812011555/br2190Isup2.hkl
To a CH2Cl2 solution (20 ml) of trans-[(Ph3P)2PdCl2] (50 mg, 0.07 mmol) a solution of 5-amino-1,3,4-thiadiazole-2-thiol (20 mg, 15 mmol) and triethylamine (2 ml) in CH2Cl2 (20 ml) was added dropwise, and immediate change from yellow to orange was noted and the resulting reaction mixture was allowed to proceed overnight at room temperature under stirring. After this time, a reddish-orangey precipitated was noted, and the solution was filtered under vacuum to afford compound trans-[(Ph3P)2Pd(SSNH2)2] (59 mg, 95% yield). Crystals suitable for single-crystal X-ray
were obtained from DMSO/iPrOH.H atoms on N were located on the Fourier map and refined isotropically (N—H = 0.90 Å). All H atoms were included in calculated positions (C—H = 0.93 Å), and refined using a riding model with U iso (H) = 1.2Ueq of the
The DMSO solvent is disordered and was refined in two major positions using a free variable of Site Occupational Factor (SOF). The ratio of disordered atoms was 55/45 of SOF. O of H2O molecule is in crystallographic center of symmetry and its H atom (H2O) was not possible to locate on the fourier map.Hydrogen bonds are commonly used to generate supramolecular assemblies of coordination complexes, in this field an important area of research is the design and synthesis of ligands that contain efficient metal coordination sites and hydrogen bonding functionalities (Beatty, 2001). In this context the ligand 5-amino-1,3,4-thiadiazole-2-thiol (SSNH2) has been used as building block for the construction of hydrogen bonded frameworks. The ligand SSNH2 can exists in the thione and thiol forms, however it can converted into the thiolate form depending on the affinity of the metal (Tzeng, et al., 1999). Several reports of SSNH2 acting as a ligand and as auxiliary in the construction of hydrogen bonds in coordination compounds with Pd(II) (Tzeng, Lee et al., 2004), Pt(II) (Tannai, et al., 2006), Cd(II) (Gao, et al., 2009) and Au(I) (Tzeng, et al., 1999; Tzeng, Huang et al., 2004) have been informed in the literature. Thus, in this opportunity we would like to report the
of the Pd(II) complex, trans-[(Ph3P)2Pd(SSNH2)2] DMSO, H2O.The molecular structure of the title compound is shown in Figure 1. The selected bond distances and angles are listed in Table 1. Only half molecule of the complex is found in the π [C9–H9···Cg(C13–C18)] intermolecular interactions. The compound crystallized with one molecule of DMSO that exhibits disorder on its structure, and one molecule of water. Weak interactions of N6—H6B···O1 (DMSO) solvent and O2—H atom of the DMSO solvent are observed. Although the solvent molecules do not participate in the strong interactions, they are important in the stabilization of the compound in the crystal lattice.
and an inversion operator is needed for the generation of a whole molecule. The Pd(II) atom in the complex exhibits a square-planar arrangement, however the geometry is forced by the and electronic repulsions due to the interactions between the phenyl and the heterocycle rings. The SSNH2 ligands are bonded to the metal center by the sulfur atoms in a trans arrangement with the thiadiazole groups found out of the plane of the Pd(II) coordination environment. The distance C2-S2 confirms that the ligand exists in the thiolate form (Downie, et al., 1972). The free amine group of the ligand SSNH2 forms a hydrogen bond N6—H6A···N4 with the nitrogen atom of the thiadiazole ring related by symmetry, generating a centrosymmetric eight-member cycle, that is extended along the c-axes to form a chain framework. These chains are kept together by weak C—H···For background to the design and synthesis of ligands that contain efficient metal coordination sites and hydrogen-bonding functionalities, see: Beatty (2001). The SSNH2 (5-amino-1,3,4-thiadiazole-2-thiol) ligand exists in the thione and thiol forms and can converted into the thiolate form depending on the affinity of the metal, see: Tzeng et al. (1999). For SSNH2 acting as a ligand and as auxiliary in the construction of hydrogen bonds in coordination compounds with PdII, see: Tzeng, Lee et al. (2004), with PtII, see: Tannai et al. (2006), with CdII, see: Gao et al. (2009) and with AuI, see: Tzeng et al. (1999); Tzeng, Huang et al. (2004). For the thiolate form, see: Downie et al. (1972).
Data collection: SMART (Bruker, 2007); cell
SAINT (Bruker, 2007); data reduction: SAINT (Bruker, 2007); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).[Pd(C2H2N3S2)2(C18H15P)2]·2C2H6OS·0.5H2O | F(000) = 2176 |
Mr = 1060.58 | Dx = 1.414 Mg m−3 |
Orthorhombic, Pbcn | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2n 2ab | Cell parameters from 6520 reflections |
a = 14.6192 (18) Å | θ = 2.2–25.0° |
b = 13.2572 (16) Å | µ = 0.73 mm−1 |
c = 25.707 (3) Å | T = 298 K |
V = 4982.3 (10) Å3 | Prism, orange |
Z = 4 | 0.24 × 0.16 × 0.13 mm |
Bruker SMART APEX CCD area-detector diffractometer | 2603 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.107 |
Graphite monochromator | θmax = 25.5°, θmin = 2.1° |
Detector resolution: 0.83 pixels mm-1 | h = −17→17 |
ω scans | k = −16→15 |
38822 measured reflections | l = −31→30 |
4590 independent reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.057 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.137 | H atoms treated by a mixture of independent and constrained refinement |
S = 0.95 | w = 1/[σ2(Fo2) + (0.0611P)2] where P = (Fo2 + 2Fc2)/3 |
4590 reflections | (Δ/σ)max = 0.001 |
322 parameters | Δρmax = 0.63 e Å−3 |
99 restraints | Δρmin = −0.37 e Å−3 |
[Pd(C2H2N3S2)2(C18H15P)2]·2C2H6OS·0.5H2O | V = 4982.3 (10) Å3 |
Mr = 1060.58 | Z = 4 |
Orthorhombic, Pbcn | Mo Kα radiation |
a = 14.6192 (18) Å | µ = 0.73 mm−1 |
b = 13.2572 (16) Å | T = 298 K |
c = 25.707 (3) Å | 0.24 × 0.16 × 0.13 mm |
Bruker SMART APEX CCD area-detector diffractometer | 2603 reflections with I > 2σ(I) |
38822 measured reflections | Rint = 0.107 |
4590 independent reflections |
R[F2 > 2σ(F2)] = 0.057 | 99 restraints |
wR(F2) = 0.137 | H atoms treated by a mixture of independent and constrained refinement |
S = 0.95 | Δρmax = 0.63 e Å−3 |
4590 reflections | Δρmin = −0.37 e Å−3 |
322 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
Pd | 0.5000 | 0.5000 | 0.5000 | 0.04092 (19) | |
S1 | 0.30706 (10) | 0.43464 (14) | 0.65323 (6) | 0.0614 (5) | |
S2 | 0.35991 (9) | 0.47537 (12) | 0.54222 (5) | 0.0494 (4) | |
C2 | 0.3886 (4) | 0.4746 (4) | 0.6078 (2) | 0.0428 (14) | |
N3 | 0.4650 (3) | 0.5019 (4) | 0.62829 (17) | 0.0527 (13) | |
N4 | 0.4655 (3) | 0.4920 (4) | 0.68230 (17) | 0.0526 (13) | |
C5 | 0.3896 (4) | 0.4590 (5) | 0.7008 (2) | 0.0561 (16) | |
N6 | 0.3726 (4) | 0.4426 (5) | 0.75160 (19) | 0.0872 (19) | |
H6A | 0.4270 (11) | 0.444 (4) | 0.7682 (6) | 0.105* | |
H6B | 0.331 (3) | 0.489 (3) | 0.7616 (8) | 0.105* | |
P1 | 0.56548 (10) | 0.35283 (12) | 0.53336 (5) | 0.0469 (4) | |
C7 | 0.6788 (4) | 0.3827 (5) | 0.5585 (2) | 0.0524 (16) | |
C8 | 0.7562 (5) | 0.3304 (6) | 0.5456 (3) | 0.084 (2) | |
H8 | 0.7521 | 0.2735 | 0.5246 | 0.101* | |
C9 | 0.8418 (5) | 0.3621 (8) | 0.5640 (3) | 0.107 (3) | |
H9 | 0.8943 | 0.3276 | 0.5541 | 0.128* | |
C10 | 0.8482 (6) | 0.4410 (8) | 0.5954 (3) | 0.105 (3) | |
H10 | 0.9050 | 0.4603 | 0.6083 | 0.126* | |
C11 | 0.7727 (5) | 0.4936 (7) | 0.6086 (3) | 0.098 (3) | |
H11 | 0.7784 | 0.5496 | 0.6301 | 0.117* | |
C12 | 0.6866 (5) | 0.4658 (6) | 0.5906 (3) | 0.073 (2) | |
H12 | 0.6351 | 0.5026 | 0.6000 | 0.088* | |
C13 | 0.5809 (4) | 0.2545 (5) | 0.4849 (2) | 0.0536 (16) | |
C14 | 0.5676 (4) | 0.2755 (5) | 0.4331 (2) | 0.0606 (17) | |
H14 | 0.5515 | 0.3401 | 0.4225 | 0.073* | |
C15 | 0.5787 (5) | 0.1981 (6) | 0.3965 (3) | 0.076 (2) | |
H15 | 0.5712 | 0.2122 | 0.3613 | 0.092* | |
C16 | 0.5999 (5) | 0.1033 (6) | 0.4115 (4) | 0.081 (2) | |
H16 | 0.6077 | 0.0531 | 0.3867 | 0.098* | |
C17 | 0.6099 (5) | 0.0812 (6) | 0.4624 (4) | 0.092 (3) | |
H17 | 0.6226 | 0.0153 | 0.4726 | 0.110* | |
C18 | 0.6013 (5) | 0.1553 (5) | 0.4991 (3) | 0.077 (2) | |
H18 | 0.6092 | 0.1395 | 0.5340 | 0.092* | |
C19 | 0.5104 (5) | 0.2807 (4) | 0.5842 (2) | 0.0555 (16) | |
C20 | 0.4262 (5) | 0.2343 (5) | 0.5738 (3) | 0.068 (2) | |
H20 | 0.3986 | 0.2451 | 0.5417 | 0.082* | |
C21 | 0.3831 (6) | 0.1739 (6) | 0.6093 (4) | 0.096 (3) | |
H21 | 0.3275 | 0.1436 | 0.6012 | 0.115* | |
C22 | 0.4222 (9) | 0.1586 (7) | 0.6560 (4) | 0.118 (4) | |
H22 | 0.3929 | 0.1177 | 0.6802 | 0.141* | |
C23 | 0.5037 (8) | 0.2019 (7) | 0.6685 (3) | 0.114 (3) | |
H23 | 0.5299 | 0.1899 | 0.7009 | 0.137* | |
C24 | 0.5477 (5) | 0.2642 (6) | 0.6326 (3) | 0.084 (2) | |
H24 | 0.6028 | 0.2948 | 0.6415 | 0.101* | |
S3 | 0.6482 (5) | 0.2367 (6) | 0.2460 (2) | 0.148 (2) | 0.555 (7) |
O1 | 0.6973 (12) | 0.2972 (13) | 0.2789 (6) | 0.205 (6) | 0.555 (7) |
C25 | 0.6929 (15) | 0.1269 (10) | 0.2344 (8) | 0.153 (5) | 0.555 (7) |
H25A | 0.7149 | 0.0982 | 0.2663 | 0.230* | 0.555 (7) |
H25B | 0.7428 | 0.1343 | 0.2104 | 0.230* | 0.555 (7) |
H25C | 0.6474 | 0.0834 | 0.2195 | 0.230* | 0.555 (7) |
C26 | 0.6108 (16) | 0.2920 (16) | 0.1935 (6) | 0.168 (6) | 0.555 (7) |
H26A | 0.5859 | 0.3568 | 0.2023 | 0.252* | 0.555 (7) |
H26B | 0.5641 | 0.2513 | 0.1777 | 0.252* | 0.555 (7) |
H26C | 0.6605 | 0.3006 | 0.1694 | 0.252* | 0.555 (7) |
S3A | 0.7135 (7) | 0.2550 (8) | 0.2128 (3) | 0.174 (3) | 0.445 (7) |
O1A | 0.7568 (16) | 0.3180 (16) | 0.2464 (8) | 0.219 (6) | 0.445 (7) |
C25A | 0.6772 (18) | 0.1491 (12) | 0.2385 (10) | 0.140 (5) | 0.445 (7) |
H25D | 0.7254 | 0.1193 | 0.2588 | 0.210* | 0.445 (7) |
H25E | 0.6595 | 0.1034 | 0.2113 | 0.210* | 0.445 (7) |
H25F | 0.6256 | 0.1625 | 0.2605 | 0.210* | 0.445 (7) |
C26A | 0.6357 (16) | 0.307 (2) | 0.1760 (10) | 0.176 (7) | 0.445 (7) |
H26D | 0.6588 | 0.3690 | 0.1620 | 0.264* | 0.445 (7) |
H26E | 0.5819 | 0.3203 | 0.1963 | 0.264* | 0.445 (7) |
H26F | 0.6205 | 0.2620 | 0.1480 | 0.264* | 0.445 (7) |
O2 | 0.5000 | 0.034 (2) | 0.2500 | 0.263 (14)* | 0.50 |
U11 | U22 | U33 | U12 | U13 | U23 | |
Pd | 0.0372 (3) | 0.0535 (4) | 0.0320 (3) | 0.0035 (3) | −0.0035 (3) | 0.0020 (3) |
S1 | 0.0524 (9) | 0.0909 (13) | 0.0409 (9) | −0.0164 (9) | 0.0029 (8) | 0.0012 (9) |
S2 | 0.0407 (8) | 0.0700 (11) | 0.0374 (8) | −0.0005 (7) | −0.0034 (6) | 0.0048 (7) |
C2 | 0.044 (3) | 0.047 (4) | 0.037 (3) | 0.004 (3) | 0.002 (3) | 0.005 (3) |
N3 | 0.044 (3) | 0.072 (3) | 0.043 (3) | −0.004 (3) | −0.005 (2) | 0.004 (3) |
N4 | 0.051 (3) | 0.070 (4) | 0.037 (3) | −0.010 (3) | −0.003 (2) | 0.005 (3) |
C5 | 0.055 (4) | 0.073 (5) | 0.041 (4) | −0.006 (3) | −0.005 (3) | 0.000 (3) |
N6 | 0.070 (4) | 0.154 (6) | 0.037 (3) | −0.015 (4) | 0.001 (3) | 0.005 (4) |
P1 | 0.0462 (9) | 0.0563 (10) | 0.0381 (8) | 0.0086 (8) | −0.0024 (7) | 0.0037 (8) |
C7 | 0.046 (4) | 0.071 (4) | 0.040 (3) | 0.012 (3) | −0.002 (3) | 0.011 (3) |
C8 | 0.063 (5) | 0.128 (7) | 0.062 (4) | 0.024 (5) | −0.009 (4) | −0.018 (5) |
C9 | 0.056 (5) | 0.178 (10) | 0.087 (6) | 0.037 (6) | −0.016 (4) | −0.026 (6) |
C10 | 0.053 (5) | 0.178 (10) | 0.084 (6) | 0.010 (6) | −0.019 (4) | −0.009 (6) |
C11 | 0.078 (6) | 0.128 (7) | 0.087 (6) | −0.015 (6) | −0.017 (5) | −0.023 (5) |
C12 | 0.054 (4) | 0.094 (6) | 0.072 (5) | 0.006 (4) | −0.013 (4) | −0.010 (4) |
C13 | 0.048 (4) | 0.071 (5) | 0.041 (4) | 0.005 (3) | 0.007 (3) | −0.005 (3) |
C14 | 0.059 (4) | 0.058 (4) | 0.064 (5) | −0.005 (3) | 0.005 (4) | −0.003 (4) |
C15 | 0.080 (5) | 0.093 (6) | 0.056 (4) | −0.010 (5) | 0.014 (4) | −0.015 (5) |
C16 | 0.076 (5) | 0.069 (6) | 0.100 (7) | −0.002 (4) | 0.031 (5) | −0.030 (5) |
C17 | 0.092 (6) | 0.070 (6) | 0.113 (7) | 0.031 (5) | 0.019 (5) | −0.006 (6) |
C18 | 0.089 (5) | 0.068 (5) | 0.073 (5) | 0.034 (4) | 0.002 (4) | 0.005 (5) |
C19 | 0.073 (5) | 0.048 (4) | 0.046 (4) | 0.016 (4) | 0.007 (4) | 0.001 (3) |
C20 | 0.094 (6) | 0.052 (4) | 0.058 (4) | −0.002 (4) | 0.022 (4) | 0.002 (4) |
C21 | 0.127 (8) | 0.068 (6) | 0.093 (6) | −0.024 (5) | 0.035 (6) | −0.006 (5) |
C22 | 0.186 (12) | 0.069 (6) | 0.099 (8) | −0.011 (7) | 0.067 (8) | 0.012 (6) |
C23 | 0.188 (11) | 0.100 (7) | 0.054 (5) | 0.009 (8) | 0.019 (7) | 0.027 (5) |
C24 | 0.111 (6) | 0.087 (6) | 0.055 (5) | 0.012 (5) | 0.008 (4) | 0.013 (4) |
S3 | 0.146 (5) | 0.196 (6) | 0.104 (4) | 0.051 (4) | −0.005 (4) | 0.006 (4) |
O1 | 0.245 (14) | 0.220 (10) | 0.149 (11) | −0.009 (10) | −0.024 (9) | −0.004 (9) |
C25 | 0.122 (11) | 0.218 (9) | 0.120 (11) | 0.086 (9) | −0.060 (9) | −0.007 (8) |
C26 | 0.166 (11) | 0.186 (10) | 0.151 (10) | 0.042 (10) | −0.020 (9) | 0.042 (8) |
S3A | 0.169 (7) | 0.230 (7) | 0.123 (6) | 0.024 (6) | −0.007 (5) | 0.011 (5) |
O1A | 0.216 (14) | 0.267 (12) | 0.173 (13) | −0.040 (11) | −0.020 (10) | 0.008 (10) |
C25A | 0.139 (11) | 0.166 (10) | 0.115 (10) | 0.080 (8) | −0.025 (9) | −0.014 (8) |
C26A | 0.188 (14) | 0.198 (13) | 0.141 (13) | 0.019 (11) | −0.003 (10) | 0.046 (10) |
Pd—P1i | 2.3363 (15) | C16—H16 | 0.9300 |
Pd—P1 | 2.3364 (15) | C17—C18 | 1.368 (9) |
Pd—S2i | 2.3407 (14) | C17—H17 | 0.9300 |
Pd—S2 | 2.3407 (14) | C18—H18 | 0.9300 |
S1—C5 | 1.748 (6) | C19—C24 | 1.377 (8) |
S1—C2 | 1.751 (5) | C19—C20 | 1.402 (8) |
S2—C2 | 1.736 (5) | C20—C21 | 1.367 (9) |
C2—N3 | 1.288 (7) | C20—H20 | 0.9300 |
N3—N4 | 1.394 (6) | C21—C22 | 1.344 (12) |
N4—C5 | 1.284 (7) | C21—H21 | 0.9300 |
C5—N6 | 1.348 (7) | C22—C23 | 1.362 (12) |
N6—H6A | 0.904 (10) | C22—H22 | 0.9300 |
N6—H6B | 0.899 (10) | C23—C24 | 1.396 (10) |
P1—C19 | 1.807 (6) | C23—H23 | 0.9300 |
P1—C13 | 1.817 (6) | C24—H24 | 0.9300 |
P1—C7 | 1.821 (6) | S3—O1 | 1.369 (12) |
C7—C8 | 1.367 (8) | S3—C25 | 1.623 (8) |
C7—C12 | 1.382 (8) | S3—C26 | 1.632 (7) |
C8—C9 | 1.402 (10) | C25—H25A | 0.9600 |
C8—H8 | 0.9300 | C25—H25B | 0.9600 |
C9—C10 | 1.324 (11) | C25—H25C | 0.9600 |
C9—H9 | 0.9300 | C26—H26A | 0.9600 |
C10—C11 | 1.348 (10) | C26—H26B | 0.9600 |
C10—H10 | 0.9300 | C26—H26C | 0.9600 |
C11—C12 | 1.391 (9) | S3A—O1A | 1.358 (12) |
C11—H11 | 0.9300 | S3A—C26A | 1.633 (8) |
C12—H12 | 0.9300 | S3A—C25A | 1.640 (8) |
C13—C14 | 1.374 (7) | C25A—H25D | 0.9600 |
C13—C18 | 1.397 (8) | C25A—H25E | 0.9600 |
C14—C15 | 1.401 (8) | C25A—H25F | 0.9600 |
C14—H14 | 0.9300 | C26A—H26D | 0.9600 |
C15—C16 | 1.351 (10) | C26A—H26E | 0.9600 |
C15—H15 | 0.9300 | C26A—H26F | 0.9600 |
C16—C17 | 1.348 (10) | ||
P1i—Pd—P1 | 180.0 | C16—C17—C18 | 120.1 (7) |
P1i—Pd—S2i | 94.12 (5) | C16—C17—H17 | 119.9 |
P1—Pd—S2i | 85.88 (5) | C18—C17—H17 | 119.9 |
P1i—Pd—S2 | 85.89 (5) | C17—C18—C13 | 121.1 (7) |
P1—Pd—S2 | 94.12 (5) | C17—C18—H18 | 119.4 |
S2i—Pd—S2 | 180.0 | C13—C18—H18 | 119.4 |
C5—S1—C2 | 86.6 (3) | C24—C19—C20 | 116.7 (6) |
C2—S2—Pd | 103.87 (19) | C24—C19—P1 | 124.2 (6) |
N3—C2—S2 | 127.2 (4) | C20—C19—P1 | 119.1 (5) |
N3—C2—S1 | 113.7 (4) | C21—C20—C19 | 122.4 (7) |
S2—C2—S1 | 119.0 (3) | C21—C20—H20 | 118.8 |
C2—N3—N4 | 112.7 (5) | C19—C20—H20 | 118.8 |
C5—N4—N3 | 113.3 (5) | C22—C21—C20 | 119.2 (9) |
N4—C5—N6 | 125.0 (5) | C22—C21—H21 | 120.4 |
N4—C5—S1 | 113.6 (4) | C20—C21—H21 | 120.4 |
N6—C5—S1 | 121.4 (5) | C21—C22—C23 | 121.4 (9) |
C5—N6—H6A | 107.1 (13) | C21—C22—H22 | 119.3 |
C5—N6—H6B | 107.0 (13) | C23—C22—H22 | 119.3 |
H6A—N6—H6B | 116.7 (19) | C22—C23—C24 | 119.7 (9) |
C19—P1—C13 | 99.9 (3) | C22—C23—H23 | 120.2 |
C19—P1—C7 | 105.3 (3) | C24—C23—H23 | 120.2 |
C13—P1—C7 | 106.6 (3) | C19—C24—C23 | 120.7 (8) |
C19—P1—Pd | 121.6 (2) | C19—C24—H24 | 119.7 |
C13—P1—Pd | 113.4 (2) | C23—C24—H24 | 119.7 |
C7—P1—Pd | 108.7 (2) | O1—S3—C25 | 115.4 (8) |
C8—C7—C12 | 118.7 (6) | O1—S3—C26 | 115.0 (9) |
C8—C7—P1 | 123.9 (6) | C25—S3—C26 | 112.7 (9) |
C12—C7—P1 | 117.4 (5) | S3—C25—H25A | 109.5 |
C7—C8—C9 | 120.3 (7) | S3—C25—H25B | 109.5 |
C7—C8—H8 | 119.8 | H25A—C25—H25B | 109.5 |
C9—C8—H8 | 119.8 | S3—C25—H25C | 109.5 |
C10—C9—C8 | 120.4 (8) | H25A—C25—H25C | 109.5 |
C10—C9—H9 | 119.8 | H25B—C25—H25C | 109.5 |
C8—C9—H9 | 119.8 | S3—C26—H26A | 109.5 |
C9—C10—C11 | 120.2 (8) | S3—C26—H26B | 109.5 |
C9—C10—H10 | 119.9 | H26A—C26—H26B | 109.5 |
C11—C10—H10 | 119.9 | S3—C26—H26C | 109.5 |
C10—C11—C12 | 121.4 (8) | H26A—C26—H26C | 109.5 |
C10—C11—H11 | 119.3 | H26B—C26—H26C | 109.5 |
C12—C11—H11 | 119.3 | O1A—S3A—C26A | 115.7 (10) |
C7—C12—C11 | 119.0 (7) | O1A—S3A—C25A | 114.9 (9) |
C7—C12—H12 | 120.5 | C26A—S3A—C25A | 111.7 (10) |
C11—C12—H12 | 120.5 | S3A—C25A—H25D | 109.5 |
C14—C13—C18 | 118.2 (6) | S3A—C25A—H25E | 109.5 |
C14—C13—P1 | 120.2 (5) | H25D—C25A—H25E | 109.5 |
C18—C13—P1 | 121.5 (5) | S3A—C25A—H25F | 109.5 |
C13—C14—C15 | 119.1 (6) | H25D—C25A—H25F | 109.5 |
C13—C14—H14 | 120.4 | H25E—C25A—H25F | 109.5 |
C15—C14—H14 | 120.4 | S3A—C26A—H26D | 109.5 |
C16—C15—C14 | 121.1 (7) | S3A—C26A—H26E | 109.5 |
C16—C15—H15 | 119.5 | H26D—C26A—H26E | 109.5 |
C14—C15—H15 | 119.5 | S3A—C26A—H26F | 109.5 |
C17—C16—C15 | 120.3 (7) | H26D—C26A—H26F | 109.5 |
C17—C16—H16 | 119.8 | H26E—C26A—H26F | 109.5 |
C15—C16—H16 | 119.8 |
Symmetry code: (i) −x+1, −y+1, −z+1. |
D—H···A | D—H | H···A | D···A | D—H···A |
N6—H6A···N4ii | 0.90 (1) | 2.12 (2) | 2.986 (7) | 160 (5) |
Symmetry code: (ii) −x+1, y, −z+3/2. |
Experimental details
Crystal data | |
Chemical formula | [Pd(C2H2N3S2)2(C18H15P)2]·2C2H6OS·0.5H2O |
Mr | 1060.58 |
Crystal system, space group | Orthorhombic, Pbcn |
Temperature (K) | 298 |
a, b, c (Å) | 14.6192 (18), 13.2572 (16), 25.707 (3) |
V (Å3) | 4982.3 (10) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.73 |
Crystal size (mm) | 0.24 × 0.16 × 0.13 |
Data collection | |
Diffractometer | Bruker SMART APEX CCD area-detector |
Absorption correction | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 38822, 4590, 2603 |
Rint | 0.107 |
(sin θ/λ)max (Å−1) | 0.605 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.057, 0.137, 0.95 |
No. of reflections | 4590 |
No. of parameters | 322 |
No. of restraints | 99 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.63, −0.37 |
Computer programs: SMART (Bruker, 2007), SAINT (Bruker, 2007), SHELXTL (Sheldrick, 2008).
Pd—P1 | 2.3364 (15) | P1—C19 | 1.807 (6) |
Pd—S2 | 2.3407 (14) | P1—C13 | 1.817 (6) |
S2—C2 | 1.736 (5) | P1—C7 | 1.821 (6) |
D—H···A | D—H | H···A | D···A | D—H···A |
N6—H6A···N4i | 0.904 (10) | 2.12 (2) | 2.986 (7) | 160 (5) |
Symmetry code: (i) −x+1, y, −z+3/2. |
Acknowledgements
RRM would like to thank CONACYT for a posdoctoral scholarship (agreement 290586-UNAM). Support of this research by CONACYT (154732) and PAPIIT (IN201711) is gratefully acknowledged.
References
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Hydrogen bonds are commonly used to generate supramolecular assemblies of coordination complexes, in this field an important area of research is the design and synthesis of ligands that contain efficient metal coordination sites and hydrogen bonding functionalities (Beatty, 2001). In this context the ligand 5-amino-1,3,4-thiadiazole-2-thiol (SSNH2) has been used as building block for the construction of hydrogen bonded frameworks. The ligand SSNH2 can exists in the thione and thiol forms, however it can converted into the thiolate form depending on the affinity of the metal (Tzeng, et al., 1999). Several reports of SSNH2 acting as a ligand and as auxiliary in the construction of hydrogen bonds in coordination compounds with Pd(II) (Tzeng, Lee et al., 2004), Pt(II) (Tannai, et al., 2006), Cd(II) (Gao, et al., 2009) and Au(I) (Tzeng, et al., 1999; Tzeng, Huang et al., 2004) have been informed in the literature. Thus, in this opportunity we would like to report the crystal structure of the Pd(II) complex, trans-[(Ph3P)2Pd(SSNH2)2] DMSO, H2O.
The molecular structure of the title compound is shown in Figure 1. The selected bond distances and angles are listed in Table 1. Only half molecule of the complex is found in the asymmetric unit and an inversion operator is needed for the generation of a whole molecule. The Pd(II) atom in the complex exhibits a square-planar arrangement, however the geometry is forced by the steric hindrance and electronic repulsions due to the interactions between the phenyl and the heterocycle rings. The SSNH2 ligands are bonded to the metal center by the sulfur atoms in a trans arrangement with the thiadiazole groups found out of the plane of the Pd(II) coordination environment. The distance C2-S2 confirms that the ligand exists in the thiolate form (Downie, et al., 1972). The free amine group of the ligand SSNH2 forms a hydrogen bond N6—H6A···N4 with the nitrogen atom of the thiadiazole ring related by symmetry, generating a centrosymmetric eight-member cycle, that is extended along the c-axes to form a chain framework. These chains are kept together by weak C—H···π [C9–H9···Cg(C13–C18)] intermolecular interactions. The compound crystallized with one molecule of DMSO that exhibits disorder on its structure, and one molecule of water. Weak interactions of N6—H6B···O1 (DMSO) solvent and O2—H atom of the DMSO solvent are observed. Although the solvent molecules do not participate in the strong interactions, they are important in the stabilization of the compound in the crystal lattice.