organic compounds
A second monoclinic polymorph for 3-amino-1-(4-methoxyphenyl)-9,10-dihydrophenanthrene-2,4-dicarbonitrile
aChemistry Department, Faculty of Science, King Abdulaziz University, PO Box 80203, Jeddah, Saudi Arabia, bThe Center of Excellence for Advanced Materials Research, King Abdulaziz University, Jeddah, PO Box 80203, Saudi Arabia, and cDepartment of Chemistry, University of Malaya, 50603 Kuala Lumpur, Malaysia
*Correspondence e-mail: edward.tiekink@gmail.com
The title compound, C23H17N3O, has been previously described in a monoclinic P21/c polymorph with Z = 4 [Asiri, Al-Youbi, Faidallah, Ng & Tiekink (2011). Acta Cryst. E67, o2449]. In the new monoclinic P21/n form, with Z = 8, there are two independent molecules, A and B, in the In both molecules, the cyclohexa-1,3-diene ring has a screw-boat conformation, whereas it is a distorted half-chair in the original polymorph. There is a fold in each molecule, as indicated by the dihedral angle between the benzene rings of the 1,2-dihydronaphthalene and aniline residues of 33.19 (10)° (molecule A) and 30.6 (10)° (molecule B). The methoxybenzene ring is twisted out of the plane of the aniline residue to which it is connected [dihedral angles = 49.22 (10) and 73.27 (10)°, in A and B respectively]. In the crystal, the two independent molecules self-associate via N—H⋯N hydrogen bonds, generating a 12-membered {⋯HNC3N}2 synthon. These are connected into a supramolecular tape in the (-101) plane by N—H⋯O(methoxy) interactions. In the P21/c polymorph, supramolecular layers are formed by N—H⋯N and N—H⋯O interactions.
Related literature
For background to the biological activity of related phenanthrene compounds, see: Wang et al. (2010); Rostom et al. (2011). For related structures, see: Asiri et al. (2011a,b); Al-Youbi et al. (2012). For ring puckering parameters, see: Cremer & Pople (1975).
Experimental
Crystal data
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Refinement
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Data collection: CrysAlis PRO (Agilent, 2011); cell CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997) and DIAMOND (Brandenburg, 2006); software used to prepare material for publication: publCIF (Westrip, 2010).
Supporting information
10.1107/S1600536812011798/bt5850sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536812011798/bt5850Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536812011798/bt5850Isup3.cml
A mixture of 4-methoxybenzaldehyde (1.38 g, 0.01 mmol), 1-tetralone (1.46 g, 0.01 mmol), malononitrile (0.66 g, 0.01 mmol) and ammonium acetate (6.2 g, 0.08 mmol) in absolute ethanol (50 ml) was refluxed for 6 h. The reaction mixture was allowed to cool, and the formed precipitate was filtered, washed with water, dried and recrystallized from ethanol. Yield: 69%. M.pt: 533–535 K.
Carbon-bound H-atoms were placed in calculated positions [C—H = 0.95 to 0.99 Å, Uiso(H) = 1.2 to 1.5Ueq(C)] and were included in the
in the riding model approximation. The N—H atoms were located in a difference Fourier map, and were refined with a distance restraint of N—H = 0.88±0.01 Å; their Uiso values were refined. Owing to poor agreement, the (1 0 1) and (0 2 1) reflections were omitted from the final cycles of refinement.In connection with structural studies on phenanthrene compounds (Asiri et al., 2011a; Asiri et al., 2011b; Al-Youbi et al., 2012), of interest owing to biological activity (Wang et al. 2010; Rostom et al., 2011), a new monoclinic polymorph of the title compound 3-amino-1-(4-methoxyphenyl)-9,10-dihydrophenanthrene-2,4-dicarbonitrile (I) was found. Previously (I) was isolated in the monoclinic
P21/c with Z = 4 (Asiri et al., 2011b). The new form crystallizes in the monoclinic P21/n with two independent molecules in the Fig. 1.The conformations of the two independent molecules in (I) differ in two regions of the molecule. In the N1-containing molecule, the cyclohexa-1,3-diene ring has a screw-boat conformation as defined by the following geometric parameters (Cremer & Pople, 1975): puckering parameters q2 = 0.527 (2) Å and q3 = 0.156 (2) Å, and amplitudes: Q = 0.549 (2) Å, θ = 73.5 (2)° and φ2 = 93.2 (3)°. By contrast, in the N4-containing molecule, the conformation is based on a distorted half-chair with puckering parameters: q2 = 0.530 (2) Å, q3 = -0.178 (2) Å, Q = 0.558 (2) Å, θ = 108.5 (2)° and φ2 = 265.8 (3) °. In the P21/c polymorph of (I), the conformation matches more closely a distorted half-chair.
For the first independent molecule, the benzene rings of the 1,2-dihydronaphthalene and methoxybenzene residues form dihedral angles of 33.19 (10) and 49.22 (10)°, respectively, with the amino-benzene ring, indicating non-planarity in the fused ring system and a twist of the methoxybenzene out of the plane of the benzene ring to which it is connected. The comparable angles for the second independent molecule are 30.6 (10) and 73.27 (10)°, respectively. Figure 2 shows an overlay diagram for the three independent molecules of (I) characterized in the two polymorphs.
In the
of (I) the two independent molecules self-associate via N—H···N hydrogen bonds to generate 12-membered {···HNC3N}2 synthons, Fig. 3 and Table 1. One of the amino-H atoms forms a hydrogen bond to a methoxy-O atom leading to the formation of a supramolecular tape along [1 0 1], Fig. 3 and Table 1. The fourth independent amino-H atom does not participate in a significant intermolecular interaction. In the previously described P21/c form of (I), supramolecular arrays with a zigzag topology were formed through N—H···N hydrogen bonds, leading to {···HNC3N}2 synthons, as well N—H···O(methoxy) hydrogen bonding.For background to the biological activity of related phenanthrene compounds, see: Wang et al. (2010); Rostom et al. (2011). For related structures, see: Asiri et al. (2011a,b); Al-Youbi et al. (2012). For ring puckering parameters, see: Cremer & Pople (1975).
Data collection: CrysAlis PRO (Agilent, 2011); cell
CrysAlis PRO (Agilent, 2011); data reduction: CrysAlis PRO (Agilent, 2011); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997) and DIAMOND (Brandenburg, 2006); software used to prepare material for publication: publCIF (Westrip, 2010).C23H17N3O | F(000) = 1472 |
Mr = 351.40 | Dx = 1.347 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2yn | Cell parameters from 4701 reflections |
a = 11.5197 (6) Å | θ = 2.4–27.5° |
b = 25.1585 (12) Å | µ = 0.09 mm−1 |
c = 11.9564 (6) Å | T = 100 K |
β = 90.719 (5)° | Prism, orange |
V = 3464.9 (3) Å3 | 0.35 × 0.35 × 0.10 mm |
Z = 8 |
Agilent SuperNova Dual diffractometer with an Atlas detector | 7990 independent reflections |
Radiation source: SuperNova (Mo) X-ray Source | 5348 reflections with I > 2σ(I) |
Mirror monochromator | Rint = 0.055 |
Detector resolution: 10.4041 pixels mm-1 | θmax = 27.6°, θmin = 2.4° |
ω scan | h = −14→14 |
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011) | k = −24→32 |
Tmin = 0.971, Tmax = 0.992 | l = −15→12 |
20450 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.060 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.156 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.04 | w = 1/[σ2(Fo2) + (0.057P)2 + 0.839P] where P = (Fo2 + 2Fc2)/3 |
7990 reflections | (Δ/σ)max = 0.001 |
503 parameters | Δρmax = 0.33 e Å−3 |
4 restraints | Δρmin = −0.25 e Å−3 |
C23H17N3O | V = 3464.9 (3) Å3 |
Mr = 351.40 | Z = 8 |
Monoclinic, P21/n | Mo Kα radiation |
a = 11.5197 (6) Å | µ = 0.09 mm−1 |
b = 25.1585 (12) Å | T = 100 K |
c = 11.9564 (6) Å | 0.35 × 0.35 × 0.10 mm |
β = 90.719 (5)° |
Agilent SuperNova Dual diffractometer with an Atlas detector | 7990 independent reflections |
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011) | 5348 reflections with I > 2σ(I) |
Tmin = 0.971, Tmax = 0.992 | Rint = 0.055 |
20450 measured reflections |
R[F2 > 2σ(F2)] = 0.060 | 4 restraints |
wR(F2) = 0.156 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.04 | Δρmax = 0.33 e Å−3 |
7990 reflections | Δρmin = −0.25 e Å−3 |
503 parameters |
x | y | z | Uiso*/Ueq | ||
O1 | 0.10070 (14) | 0.15244 (6) | 0.28185 (14) | 0.0303 (4) | |
O2 | 0.84581 (15) | 0.39154 (6) | 1.09183 (14) | 0.0328 (4) | |
N1 | 0.35813 (17) | 0.54827 (8) | 0.59073 (16) | 0.0301 (5) | |
N2 | 0.44427 (18) | 0.41933 (8) | 0.60868 (17) | 0.0286 (4) | |
N3 | 0.45795 (18) | 0.28657 (8) | 0.52814 (17) | 0.0341 (5) | |
N4 | 0.48229 (19) | 0.77085 (8) | 0.78737 (19) | 0.0377 (5) | |
N5 | 0.49102 (17) | 0.64209 (8) | 0.72209 (16) | 0.0268 (4) | |
N6 | 0.56385 (16) | 0.51011 (7) | 0.73917 (15) | 0.0249 (4) | |
C1 | 0.15965 (18) | 0.40545 (8) | 0.38717 (18) | 0.0220 (5) | |
C2 | 0.04533 (18) | 0.40182 (9) | 0.32242 (19) | 0.0242 (5) | |
H2A | 0.0596 | 0.4063 | 0.2415 | 0.029* | |
H2B | 0.0102 | 0.3664 | 0.3338 | 0.029* | |
C3 | −0.03757 (19) | 0.44473 (8) | 0.36222 (19) | 0.0256 (5) | |
H3A | −0.1106 | 0.4432 | 0.3178 | 0.031* | |
H3B | −0.0566 | 0.4386 | 0.4417 | 0.031* | |
C4 | 0.01701 (19) | 0.49843 (9) | 0.34957 (18) | 0.0235 (5) | |
C5 | −0.0443 (2) | 0.54234 (9) | 0.31252 (19) | 0.0275 (5) | |
H5 | −0.1252 | 0.5393 | 0.2974 | 0.033* | |
C6 | 0.0111 (2) | 0.59115 (9) | 0.29700 (19) | 0.0292 (5) | |
H6 | −0.0323 | 0.6216 | 0.2748 | 0.035* | |
C7 | 0.1298 (2) | 0.59477 (9) | 0.31422 (18) | 0.0268 (5) | |
H7 | 0.1686 | 0.6273 | 0.2992 | 0.032* | |
C8 | 0.1925 (2) | 0.55150 (9) | 0.35315 (18) | 0.0249 (5) | |
H8 | 0.2738 | 0.5546 | 0.3653 | 0.030* | |
C9 | 0.13701 (19) | 0.50318 (8) | 0.37478 (17) | 0.0222 (5) | |
C10 | 0.19815 (18) | 0.45619 (8) | 0.41975 (18) | 0.0220 (5) | |
C11 | 0.29307 (18) | 0.46056 (8) | 0.49625 (18) | 0.0218 (5) | |
C12 | 0.35534 (19) | 0.41555 (8) | 0.53271 (18) | 0.0225 (5) | |
C13 | 0.32176 (19) | 0.36595 (8) | 0.48802 (18) | 0.0225 (5) | |
C14 | 0.22155 (19) | 0.36049 (8) | 0.41905 (18) | 0.0211 (5) | |
C15 | 0.32687 (18) | 0.51051 (9) | 0.54559 (18) | 0.0221 (5) | |
C16 | 0.3947 (2) | 0.32124 (9) | 0.51117 (18) | 0.0256 (5) | |
C17 | 0.18686 (18) | 0.30606 (8) | 0.38398 (18) | 0.0228 (5) | |
C18 | 0.1762 (2) | 0.26602 (9) | 0.46277 (19) | 0.0268 (5) | |
H18 | 0.1886 | 0.2742 | 0.5396 | 0.032* | |
C19 | 0.1478 (2) | 0.21416 (9) | 0.4326 (2) | 0.0278 (5) | |
H19 | 0.1418 | 0.1872 | 0.4879 | 0.033* | |
C20 | 0.12838 (18) | 0.20240 (9) | 0.3206 (2) | 0.0248 (5) | |
C21 | 0.13611 (18) | 0.24202 (9) | 0.24038 (19) | 0.0248 (5) | |
H21 | 0.1213 | 0.2339 | 0.1639 | 0.030* | |
C22 | 0.16527 (18) | 0.29310 (9) | 0.27145 (18) | 0.0242 (5) | |
H22 | 0.1708 | 0.3199 | 0.2159 | 0.029* | |
C23 | 0.1006 (2) | 0.11064 (9) | 0.3630 (2) | 0.0355 (6) | |
H23A | 0.0808 | 0.0770 | 0.3263 | 0.053* | |
H23B | 0.0430 | 0.1185 | 0.4204 | 0.053* | |
H23C | 0.1777 | 0.1078 | 0.3980 | 0.053* | |
C24 | 0.69808 (19) | 0.63961 (8) | 1.01349 (18) | 0.0218 (5) | |
C25 | 0.7659 (2) | 0.64074 (9) | 1.12243 (18) | 0.0259 (5) | |
H25A | 0.8455 | 0.6540 | 1.1092 | 0.031* | |
H25B | 0.7717 | 0.6043 | 1.1535 | 0.031* | |
C26 | 0.7052 (2) | 0.67681 (9) | 1.20495 (18) | 0.0262 (5) | |
H26A | 0.6265 | 0.6630 | 1.2203 | 0.031* | |
H26B | 0.7496 | 0.6780 | 1.2763 | 0.031* | |
C27 | 0.69672 (18) | 0.73163 (9) | 1.15568 (18) | 0.0233 (5) | |
C28 | 0.71185 (19) | 0.77700 (9) | 1.22026 (19) | 0.0269 (5) | |
H28 | 0.7195 | 0.7738 | 1.2992 | 0.032* | |
C29 | 0.71595 (19) | 0.82680 (9) | 1.1717 (2) | 0.0290 (5) | |
H29 | 0.7253 | 0.8575 | 1.2172 | 0.035* | |
C30 | 0.7064 (2) | 0.83184 (9) | 1.0572 (2) | 0.0279 (5) | |
H30 | 0.7140 | 0.8658 | 1.0233 | 0.033* | |
C31 | 0.68564 (19) | 0.78737 (9) | 0.99132 (19) | 0.0252 (5) | |
H31 | 0.6764 | 0.7912 | 0.9127 | 0.030* | |
C32 | 0.67824 (18) | 0.73687 (8) | 1.03971 (19) | 0.0229 (5) | |
C33 | 0.65311 (18) | 0.68813 (8) | 0.97334 (18) | 0.0219 (5) | |
C34 | 0.58428 (18) | 0.68879 (8) | 0.87531 (18) | 0.0213 (5) | |
C35 | 0.56000 (18) | 0.64163 (8) | 0.81431 (18) | 0.0210 (5) | |
C36 | 0.61077 (18) | 0.59420 (8) | 0.85423 (18) | 0.0213 (5) | |
C37 | 0.67812 (19) | 0.59281 (8) | 0.95346 (18) | 0.0215 (5) | |
C38 | 0.5298 (2) | 0.73604 (9) | 0.8308 (2) | 0.0275 (5) | |
C39 | 0.58701 (18) | 0.54667 (9) | 0.79306 (18) | 0.0215 (5) | |
C40 | 0.72664 (19) | 0.54034 (8) | 0.99069 (17) | 0.0209 (5) | |
C41 | 0.6805 (2) | 0.51357 (9) | 1.08273 (19) | 0.0266 (5) | |
H41 | 0.6193 | 0.5293 | 1.1237 | 0.032* | |
C42 | 0.7230 (2) | 0.46448 (9) | 1.11451 (19) | 0.0282 (5) | |
H42 | 0.6908 | 0.4467 | 1.1769 | 0.034* | |
C43 | 0.81266 (19) | 0.44099 (9) | 1.05564 (18) | 0.0244 (5) | |
C44 | 0.8609 (2) | 0.46710 (9) | 0.96590 (19) | 0.0253 (5) | |
H44 | 0.9237 | 0.4517 | 0.9266 | 0.030* | |
C45 | 0.81622 (19) | 0.51622 (8) | 0.93386 (18) | 0.0240 (5) | |
H45 | 0.8482 | 0.5337 | 0.8710 | 0.029* | |
C46 | 0.9325 (2) | 0.36427 (10) | 1.0298 (2) | 0.0368 (6) | |
H46A | 0.9475 | 0.3295 | 1.0640 | 0.055* | |
H46B | 1.0041 | 0.3852 | 1.0303 | 0.055* | |
H46C | 0.9052 | 0.3593 | 0.9525 | 0.055* | |
H1 | 0.4837 (17) | 0.3901 (6) | 0.6221 (18) | 0.020 (6)* | |
H2 | 0.466 (2) | 0.4511 (6) | 0.633 (2) | 0.044 (8)* | |
H3 | 0.469 (2) | 0.6121 (6) | 0.690 (2) | 0.037 (7)* | |
H4 | 0.460 (2) | 0.6715 (6) | 0.695 (2) | 0.034 (7)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0352 (9) | 0.0210 (8) | 0.0348 (9) | −0.0020 (7) | −0.0035 (8) | −0.0052 (7) |
O2 | 0.0406 (10) | 0.0253 (9) | 0.0326 (9) | 0.0105 (7) | 0.0036 (8) | 0.0064 (7) |
N1 | 0.0324 (11) | 0.0285 (11) | 0.0292 (11) | 0.0001 (9) | −0.0087 (9) | −0.0013 (9) |
N2 | 0.0327 (11) | 0.0217 (11) | 0.0312 (11) | −0.0024 (9) | −0.0098 (9) | −0.0009 (9) |
N3 | 0.0395 (12) | 0.0264 (11) | 0.0360 (12) | 0.0011 (10) | −0.0081 (10) | 0.0000 (9) |
N4 | 0.0426 (12) | 0.0272 (11) | 0.0431 (13) | 0.0031 (10) | −0.0126 (11) | 0.0005 (10) |
N5 | 0.0344 (11) | 0.0204 (11) | 0.0254 (10) | 0.0015 (9) | −0.0075 (9) | 0.0019 (9) |
N6 | 0.0275 (10) | 0.0229 (10) | 0.0240 (10) | 0.0010 (8) | −0.0055 (8) | 0.0010 (8) |
C1 | 0.0230 (11) | 0.0243 (11) | 0.0187 (10) | −0.0033 (9) | 0.0022 (9) | −0.0005 (9) |
C2 | 0.0256 (11) | 0.0244 (11) | 0.0226 (11) | −0.0036 (9) | −0.0024 (10) | −0.0009 (9) |
C3 | 0.0243 (11) | 0.0280 (12) | 0.0246 (11) | −0.0025 (9) | −0.0003 (10) | −0.0016 (10) |
C4 | 0.0249 (11) | 0.0267 (12) | 0.0190 (11) | 0.0006 (9) | 0.0006 (9) | −0.0039 (9) |
C5 | 0.0280 (12) | 0.0300 (13) | 0.0245 (12) | −0.0007 (10) | −0.0009 (10) | −0.0031 (10) |
C6 | 0.0370 (13) | 0.0264 (12) | 0.0243 (12) | 0.0070 (10) | −0.0035 (11) | −0.0011 (10) |
C7 | 0.0352 (13) | 0.0240 (12) | 0.0213 (11) | −0.0032 (10) | −0.0014 (10) | −0.0053 (9) |
C8 | 0.0301 (12) | 0.0242 (12) | 0.0204 (11) | −0.0010 (9) | −0.0024 (10) | −0.0037 (9) |
C9 | 0.0270 (11) | 0.0222 (11) | 0.0174 (10) | 0.0000 (9) | 0.0013 (9) | −0.0037 (9) |
C10 | 0.0220 (11) | 0.0244 (11) | 0.0199 (11) | −0.0014 (9) | 0.0044 (9) | −0.0006 (9) |
C11 | 0.0222 (11) | 0.0205 (11) | 0.0228 (11) | −0.0030 (9) | 0.0025 (9) | −0.0018 (9) |
C12 | 0.0233 (11) | 0.0238 (11) | 0.0205 (11) | −0.0027 (9) | 0.0033 (9) | 0.0002 (9) |
C13 | 0.0269 (11) | 0.0213 (11) | 0.0194 (11) | −0.0003 (9) | 0.0017 (9) | 0.0018 (9) |
C14 | 0.0255 (11) | 0.0200 (11) | 0.0180 (10) | −0.0019 (9) | 0.0035 (9) | −0.0004 (9) |
C15 | 0.0218 (11) | 0.0222 (11) | 0.0221 (11) | 0.0009 (9) | −0.0009 (9) | −0.0005 (9) |
C16 | 0.0327 (12) | 0.0219 (12) | 0.0220 (11) | −0.0069 (10) | −0.0011 (10) | −0.0020 (9) |
C17 | 0.0223 (11) | 0.0224 (11) | 0.0238 (11) | −0.0005 (9) | 0.0010 (10) | −0.0008 (9) |
C18 | 0.0326 (12) | 0.0253 (12) | 0.0225 (11) | −0.0028 (10) | −0.0016 (10) | −0.0028 (10) |
C19 | 0.0330 (12) | 0.0224 (12) | 0.0279 (12) | −0.0025 (10) | 0.0010 (11) | 0.0024 (10) |
C20 | 0.0212 (11) | 0.0221 (11) | 0.0311 (12) | −0.0010 (9) | 0.0008 (10) | −0.0064 (10) |
C21 | 0.0227 (11) | 0.0276 (12) | 0.0239 (11) | −0.0003 (9) | −0.0008 (10) | −0.0044 (10) |
C22 | 0.0241 (11) | 0.0273 (12) | 0.0212 (11) | 0.0005 (9) | 0.0033 (10) | 0.0007 (9) |
C23 | 0.0446 (15) | 0.0202 (12) | 0.0415 (15) | −0.0017 (11) | −0.0057 (13) | −0.0033 (11) |
C24 | 0.0239 (11) | 0.0224 (11) | 0.0191 (11) | −0.0022 (9) | 0.0000 (9) | 0.0012 (9) |
C25 | 0.0321 (12) | 0.0221 (11) | 0.0232 (12) | −0.0008 (9) | −0.0065 (10) | −0.0004 (9) |
C26 | 0.0326 (12) | 0.0269 (12) | 0.0190 (11) | −0.0045 (10) | −0.0032 (10) | 0.0012 (9) |
C27 | 0.0222 (11) | 0.0253 (12) | 0.0223 (11) | −0.0014 (9) | 0.0005 (10) | −0.0021 (9) |
C28 | 0.0280 (12) | 0.0277 (12) | 0.0250 (12) | 0.0024 (10) | −0.0025 (10) | −0.0041 (10) |
C29 | 0.0259 (12) | 0.0286 (12) | 0.0323 (13) | 0.0041 (10) | −0.0031 (11) | −0.0106 (10) |
C30 | 0.0296 (12) | 0.0191 (11) | 0.0349 (13) | 0.0007 (9) | −0.0021 (11) | −0.0006 (10) |
C31 | 0.0272 (11) | 0.0239 (12) | 0.0246 (12) | 0.0012 (9) | −0.0014 (10) | −0.0003 (10) |
C32 | 0.0210 (11) | 0.0214 (11) | 0.0266 (12) | −0.0008 (9) | 0.0033 (10) | −0.0022 (9) |
C33 | 0.0227 (11) | 0.0238 (11) | 0.0195 (11) | −0.0012 (9) | 0.0031 (9) | 0.0002 (9) |
C34 | 0.0242 (11) | 0.0191 (11) | 0.0206 (11) | −0.0007 (9) | 0.0009 (9) | 0.0009 (9) |
C35 | 0.0222 (11) | 0.0222 (11) | 0.0187 (11) | −0.0015 (9) | 0.0016 (9) | −0.0004 (9) |
C36 | 0.0250 (11) | 0.0187 (11) | 0.0201 (11) | −0.0016 (9) | 0.0016 (9) | −0.0011 (9) |
C37 | 0.0263 (11) | 0.0199 (11) | 0.0183 (10) | −0.0016 (9) | 0.0019 (9) | 0.0028 (9) |
C38 | 0.0295 (12) | 0.0256 (12) | 0.0274 (12) | 0.0002 (10) | −0.0029 (10) | −0.0034 (10) |
C39 | 0.0212 (11) | 0.0242 (11) | 0.0193 (10) | 0.0030 (9) | 0.0003 (9) | 0.0037 (9) |
C40 | 0.0256 (11) | 0.0199 (11) | 0.0170 (10) | −0.0032 (9) | −0.0042 (9) | −0.0005 (9) |
C41 | 0.0278 (12) | 0.0273 (12) | 0.0248 (11) | 0.0025 (10) | 0.0029 (10) | 0.0012 (10) |
C42 | 0.0332 (13) | 0.0277 (12) | 0.0240 (12) | −0.0001 (10) | 0.0045 (11) | 0.0057 (10) |
C43 | 0.0285 (12) | 0.0224 (11) | 0.0223 (11) | 0.0008 (9) | −0.0043 (10) | 0.0018 (9) |
C44 | 0.0263 (11) | 0.0261 (12) | 0.0236 (11) | 0.0002 (9) | 0.0022 (10) | −0.0038 (10) |
C45 | 0.0301 (12) | 0.0226 (11) | 0.0191 (11) | −0.0052 (9) | 0.0007 (10) | 0.0010 (9) |
C46 | 0.0420 (14) | 0.0291 (13) | 0.0392 (15) | 0.0112 (11) | 0.0017 (13) | 0.0003 (11) |
O1—C20 | 1.376 (3) | C20—C21 | 1.387 (3) |
O1—C23 | 1.431 (3) | C21—C22 | 1.378 (3) |
O2—C43 | 1.370 (3) | C21—H21 | 0.9500 |
O2—C46 | 1.427 (3) | C22—H22 | 0.9500 |
N1—C15 | 1.148 (3) | C23—H23A | 0.9800 |
N2—C12 | 1.364 (3) | C23—H23B | 0.9800 |
N2—H1 | 0.879 (9) | C23—H23C | 0.9800 |
N2—H2 | 0.887 (10) | C24—C37 | 1.396 (3) |
N3—C16 | 1.153 (3) | C24—C33 | 1.408 (3) |
N4—C38 | 1.153 (3) | C24—C25 | 1.511 (3) |
N5—C35 | 1.351 (3) | C25—C26 | 1.518 (3) |
N5—H3 | 0.884 (10) | C25—H25A | 0.9900 |
N5—H4 | 0.881 (10) | C25—H25B | 0.9900 |
N6—C39 | 1.152 (3) | C26—C27 | 1.503 (3) |
C1—C14 | 1.388 (3) | C26—H26A | 0.9900 |
C1—C10 | 1.405 (3) | C26—H26B | 0.9900 |
C1—C2 | 1.522 (3) | C27—C28 | 1.388 (3) |
C2—C3 | 1.521 (3) | C27—C32 | 1.406 (3) |
C2—H2A | 0.9900 | C28—C29 | 1.382 (3) |
C2—H2B | 0.9900 | C28—H28 | 0.9500 |
C3—C4 | 1.499 (3) | C29—C30 | 1.378 (3) |
C3—H3A | 0.9900 | C29—H29 | 0.9500 |
C3—H3B | 0.9900 | C30—C31 | 1.387 (3) |
C4—C5 | 1.381 (3) | C30—H30 | 0.9500 |
C4—C9 | 1.416 (3) | C31—C32 | 1.399 (3) |
C5—C6 | 1.398 (3) | C31—H31 | 0.9500 |
C5—H5 | 0.9500 | C32—C33 | 1.487 (3) |
C6—C7 | 1.383 (3) | C33—C34 | 1.407 (3) |
C6—H6 | 0.9500 | C34—C35 | 1.419 (3) |
C7—C8 | 1.384 (3) | C34—C38 | 1.443 (3) |
C7—H7 | 0.9500 | C35—C36 | 1.410 (3) |
C8—C9 | 1.399 (3) | C36—C37 | 1.410 (3) |
C8—H8 | 0.9500 | C36—C39 | 1.426 (3) |
C9—C10 | 1.474 (3) | C37—C40 | 1.499 (3) |
C10—C11 | 1.421 (3) | C40—C45 | 1.383 (3) |
C11—C12 | 1.407 (3) | C40—C41 | 1.401 (3) |
C11—C15 | 1.440 (3) | C41—C42 | 1.380 (3) |
C12—C13 | 1.410 (3) | C41—H41 | 0.9500 |
C13—C14 | 1.417 (3) | C42—C43 | 1.389 (3) |
C13—C16 | 1.429 (3) | C42—H42 | 0.9500 |
C14—C17 | 1.486 (3) | C43—C44 | 1.381 (3) |
C17—C18 | 1.386 (3) | C44—C45 | 1.391 (3) |
C17—C22 | 1.404 (3) | C44—H44 | 0.9500 |
C18—C19 | 1.391 (3) | C45—H45 | 0.9500 |
C18—H18 | 0.9500 | C46—H46A | 0.9800 |
C19—C20 | 1.387 (3) | C46—H46B | 0.9800 |
C19—H19 | 0.9500 | C46—H46C | 0.9800 |
C20—O1—C23 | 116.44 (18) | H23A—C23—H23B | 109.5 |
C43—O2—C46 | 117.81 (17) | O1—C23—H23C | 109.5 |
C12—N2—H1 | 116.5 (15) | H23A—C23—H23C | 109.5 |
C12—N2—H2 | 119.4 (18) | H23B—C23—H23C | 109.5 |
H1—N2—H2 | 123 (2) | C37—C24—C33 | 119.9 (2) |
C35—N5—H3 | 121.0 (18) | C37—C24—C25 | 122.62 (19) |
C35—N5—H4 | 122.4 (17) | C33—C24—C25 | 117.50 (19) |
H3—N5—H4 | 116 (2) | C24—C25—C26 | 109.51 (19) |
C14—C1—C10 | 120.3 (2) | C24—C25—H25A | 109.8 |
C14—C1—C2 | 121.95 (19) | C26—C25—H25A | 109.8 |
C10—C1—C2 | 117.62 (19) | C24—C25—H25B | 109.8 |
C3—C2—C1 | 109.93 (18) | C26—C25—H25B | 109.8 |
C3—C2—H2A | 109.7 | H25A—C25—H25B | 108.2 |
C1—C2—H2A | 109.7 | C27—C26—C25 | 108.80 (17) |
C3—C2—H2B | 109.7 | C27—C26—H26A | 109.9 |
C1—C2—H2B | 109.7 | C25—C26—H26A | 109.9 |
H2A—C2—H2B | 108.2 | C27—C26—H26B | 109.9 |
C4—C3—C2 | 110.02 (18) | C25—C26—H26B | 109.9 |
C4—C3—H3A | 109.7 | H26A—C26—H26B | 108.3 |
C2—C3—H3A | 109.7 | C28—C27—C32 | 119.2 (2) |
C4—C3—H3B | 109.7 | C28—C27—C26 | 122.0 (2) |
C2—C3—H3B | 109.7 | C32—C27—C26 | 118.74 (19) |
H3A—C3—H3B | 108.2 | C29—C28—C27 | 121.1 (2) |
C5—C4—C9 | 119.7 (2) | C29—C28—H28 | 119.5 |
C5—C4—C3 | 122.7 (2) | C27—C28—H28 | 119.5 |
C9—C4—C3 | 117.7 (2) | C30—C29—C28 | 119.9 (2) |
C4—C5—C6 | 120.8 (2) | C30—C29—H29 | 120.1 |
C4—C5—H5 | 119.6 | C28—C29—H29 | 120.1 |
C6—C5—H5 | 119.6 | C29—C30—C31 | 120.1 (2) |
C7—C6—C5 | 119.4 (2) | C29—C30—H30 | 120.0 |
C7—C6—H6 | 120.3 | C31—C30—H30 | 120.0 |
C5—C6—H6 | 120.3 | C30—C31—C32 | 120.6 (2) |
C6—C7—C8 | 120.6 (2) | C30—C31—H31 | 119.7 |
C6—C7—H7 | 119.7 | C32—C31—H31 | 119.7 |
C8—C7—H7 | 119.7 | C31—C32—C27 | 118.9 (2) |
C7—C8—C9 | 120.5 (2) | C31—C32—C33 | 122.7 (2) |
C7—C8—H8 | 119.7 | C27—C32—C33 | 118.35 (19) |
C9—C8—H8 | 119.7 | C24—C33—C34 | 119.70 (19) |
C8—C9—C4 | 118.7 (2) | C24—C33—C32 | 117.69 (19) |
C8—C9—C10 | 123.2 (2) | C34—C33—C32 | 122.59 (19) |
C4—C9—C10 | 118.07 (19) | C33—C34—C35 | 121.59 (19) |
C1—C10—C11 | 119.1 (2) | C33—C34—C38 | 123.69 (19) |
C1—C10—C9 | 118.7 (2) | C35—C34—C38 | 114.69 (19) |
C11—C10—C9 | 122.21 (19) | N5—C35—C36 | 121.38 (19) |
C12—C11—C10 | 121.5 (2) | N5—C35—C34 | 121.51 (19) |
C12—C11—C15 | 116.2 (2) | C36—C35—C34 | 117.11 (19) |
C10—C11—C15 | 122.23 (19) | C35—C36—C37 | 121.83 (19) |
N2—C12—C13 | 121.0 (2) | C35—C36—C39 | 117.39 (19) |
N2—C12—C11 | 121.7 (2) | C37—C36—C39 | 120.71 (19) |
C13—C12—C11 | 117.3 (2) | C24—C37—C36 | 119.81 (19) |
C12—C13—C14 | 121.6 (2) | C24—C37—C40 | 122.10 (19) |
C12—C13—C16 | 117.7 (2) | C36—C37—C40 | 118.09 (18) |
C14—C13—C16 | 120.6 (2) | N4—C38—C34 | 173.6 (2) |
C1—C14—C13 | 119.5 (2) | N6—C39—C36 | 175.8 (2) |
C1—C14—C17 | 122.6 (2) | C45—C40—C41 | 117.9 (2) |
C13—C14—C17 | 117.90 (19) | C45—C40—C37 | 121.21 (18) |
N1—C15—C11 | 175.0 (2) | C41—C40—C37 | 120.86 (19) |
N3—C16—C13 | 176.7 (2) | C42—C41—C40 | 120.6 (2) |
C18—C17—C22 | 117.8 (2) | C42—C41—H41 | 119.7 |
C18—C17—C14 | 120.3 (2) | C40—C41—H41 | 119.7 |
C22—C17—C14 | 121.90 (19) | C41—C42—C43 | 120.3 (2) |
C17—C18—C19 | 121.9 (2) | C41—C42—H42 | 119.8 |
C17—C18—H18 | 119.1 | C43—C42—H42 | 119.8 |
C19—C18—H18 | 119.1 | O2—C43—C44 | 124.35 (19) |
C20—C19—C18 | 119.0 (2) | O2—C43—C42 | 115.62 (19) |
C20—C19—H19 | 120.5 | C44—C43—C42 | 120.0 (2) |
C18—C19—H19 | 120.5 | C43—C44—C45 | 119.1 (2) |
O1—C20—C19 | 123.6 (2) | C43—C44—H44 | 120.5 |
O1—C20—C21 | 116.1 (2) | C45—C44—H44 | 120.5 |
C19—C20—C21 | 120.2 (2) | C40—C45—C44 | 122.0 (2) |
C22—C21—C20 | 120.1 (2) | C40—C45—H45 | 119.0 |
C22—C21—H21 | 119.9 | C44—C45—H45 | 119.0 |
C20—C21—H21 | 119.9 | O2—C46—H46A | 109.5 |
C21—C22—C17 | 121.0 (2) | O2—C46—H46B | 109.5 |
C21—C22—H22 | 119.5 | H46A—C46—H46B | 109.5 |
C17—C22—H22 | 119.5 | O2—C46—H46C | 109.5 |
O1—C23—H23A | 109.5 | H46A—C46—H46C | 109.5 |
O1—C23—H23B | 109.5 | H46B—C46—H46C | 109.5 |
C14—C1—C2—C3 | 142.7 (2) | C37—C24—C25—C26 | −137.3 (2) |
C10—C1—C2—C3 | −33.8 (3) | C33—C24—C25—C26 | 42.0 (3) |
C1—C2—C3—C4 | 57.0 (2) | C24—C25—C26—C27 | −59.1 (2) |
C2—C3—C4—C5 | 139.7 (2) | C25—C26—C27—C28 | −141.3 (2) |
C2—C3—C4—C9 | −38.9 (3) | C25—C26—C27—C32 | 35.7 (3) |
C9—C4—C5—C6 | 1.5 (3) | C32—C27—C28—C29 | −3.9 (3) |
C3—C4—C5—C6 | −177.0 (2) | C26—C27—C28—C29 | 173.1 (2) |
C4—C5—C6—C7 | 2.9 (3) | C27—C28—C29—C30 | −0.8 (3) |
C5—C6—C7—C8 | −4.0 (3) | C28—C29—C30—C31 | 3.9 (3) |
C6—C7—C8—C9 | 0.6 (3) | C29—C30—C31—C32 | −2.2 (3) |
C7—C8—C9—C4 | 3.9 (3) | C30—C31—C32—C27 | −2.5 (3) |
C7—C8—C9—C10 | −177.96 (19) | C30—C31—C32—C33 | 178.4 (2) |
C5—C4—C9—C8 | −4.9 (3) | C28—C27—C32—C31 | 5.5 (3) |
C3—C4—C9—C8 | 173.76 (19) | C26—C27—C32—C31 | −171.6 (2) |
C5—C4—C9—C10 | 176.82 (19) | C28—C27—C32—C33 | −175.32 (19) |
C3—C4—C9—C10 | −4.5 (3) | C26—C27—C32—C33 | 7.6 (3) |
C14—C1—C10—C11 | −7.3 (3) | C37—C24—C33—C34 | 2.6 (3) |
C2—C1—C10—C11 | 169.22 (19) | C25—C24—C33—C34 | −176.74 (18) |
C14—C1—C10—C9 | 173.81 (19) | C37—C24—C33—C32 | −179.21 (18) |
C2—C1—C10—C9 | −9.7 (3) | C25—C24—C33—C32 | 1.5 (3) |
C8—C9—C10—C1 | −147.5 (2) | C31—C32—C33—C24 | 151.2 (2) |
C4—C9—C10—C1 | 30.7 (3) | C27—C32—C33—C24 | −27.9 (3) |
C8—C9—C10—C11 | 33.7 (3) | C31—C32—C33—C34 | −30.6 (3) |
C4—C9—C10—C11 | −148.1 (2) | C27—C32—C33—C34 | 150.2 (2) |
C1—C10—C11—C12 | 5.4 (3) | C24—C33—C34—C35 | −0.9 (3) |
C9—C10—C11—C12 | −175.76 (19) | C32—C33—C34—C35 | −179.01 (19) |
C1—C10—C11—C15 | −171.03 (18) | C24—C33—C34—C38 | 176.9 (2) |
C9—C10—C11—C15 | 7.8 (3) | C32—C33—C34—C38 | −1.2 (3) |
C10—C11—C12—N2 | −178.0 (2) | C33—C34—C35—N5 | 177.97 (19) |
C15—C11—C12—N2 | −1.4 (3) | C38—C34—C35—N5 | 0.0 (3) |
C10—C11—C12—C13 | 1.6 (3) | C33—C34—C35—C36 | −1.9 (3) |
C15—C11—C12—C13 | 178.25 (18) | C38—C34—C35—C36 | −179.84 (19) |
N2—C12—C13—C14 | 172.7 (2) | N5—C35—C36—C37 | −176.77 (19) |
C11—C12—C13—C14 | −6.9 (3) | C34—C35—C36—C37 | 3.1 (3) |
N2—C12—C13—C16 | −9.5 (3) | N5—C35—C36—C39 | 0.3 (3) |
C11—C12—C13—C16 | 170.85 (19) | C34—C35—C36—C39 | −179.80 (18) |
C10—C1—C14—C13 | 2.2 (3) | C33—C24—C37—C36 | −1.4 (3) |
C2—C1—C14—C13 | −174.18 (19) | C25—C24—C37—C36 | 177.87 (19) |
C10—C1—C14—C17 | −178.03 (18) | C33—C24—C37—C40 | 178.31 (18) |
C2—C1—C14—C17 | 5.6 (3) | C25—C24—C37—C40 | −2.4 (3) |
C12—C13—C14—C1 | 5.1 (3) | C35—C36—C37—C24 | −1.5 (3) |
C16—C13—C14—C1 | −172.57 (19) | C39—C36—C37—C24 | −178.50 (19) |
C12—C13—C14—C17 | −174.65 (18) | C35—C36—C37—C40 | 178.76 (18) |
C16—C13—C14—C17 | 7.6 (3) | C39—C36—C37—C40 | 1.7 (3) |
C1—C14—C17—C18 | −129.0 (2) | C24—C37—C40—C45 | −108.3 (2) |
C13—C14—C17—C18 | 50.8 (3) | C36—C37—C40—C45 | 71.4 (3) |
C1—C14—C17—C22 | 51.8 (3) | C24—C37—C40—C41 | 73.3 (3) |
C13—C14—C17—C22 | −128.4 (2) | C36—C37—C40—C41 | −107.0 (2) |
C22—C17—C18—C19 | 1.5 (3) | C45—C40—C41—C42 | −0.5 (3) |
C14—C17—C18—C19 | −177.7 (2) | C37—C40—C41—C42 | 177.9 (2) |
C17—C18—C19—C20 | −0.7 (3) | C40—C41—C42—C43 | 0.2 (4) |
C23—O1—C20—C19 | −4.4 (3) | C46—O2—C43—C44 | −2.8 (3) |
C23—O1—C20—C21 | 175.8 (2) | C46—O2—C43—C42 | 176.1 (2) |
C18—C19—C20—O1 | 179.52 (19) | C41—C42—C43—O2 | −177.9 (2) |
C18—C19—C20—C21 | −0.7 (3) | C41—C42—C43—C44 | 1.0 (4) |
O1—C20—C21—C22 | −178.95 (18) | O2—C43—C44—C45 | 177.0 (2) |
C19—C20—C21—C22 | 1.2 (3) | C42—C43—C44—C45 | −1.8 (3) |
C20—C21—C22—C17 | −0.4 (3) | C41—C40—C45—C44 | −0.3 (3) |
C18—C17—C22—C21 | −1.0 (3) | C37—C40—C45—C44 | −178.8 (2) |
C14—C17—C22—C21 | 178.30 (19) | C43—C44—C45—C40 | 1.5 (3) |
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2···N6 | 0.89 (1) | 2.25 (2) | 3.081 (3) | 157 (3) |
N5—H3···N1 | 0.88 (1) | 2.36 (1) | 3.213 (3) | 162 (2) |
N2—H1···O1i | 0.88 (2) | 2.56 (2) | 3.271 (3) | 139 (2) |
Symmetry code: (i) x+1/2, −y+1/2, z+1/2. |
Experimental details
Crystal data | |
Chemical formula | C23H17N3O |
Mr | 351.40 |
Crystal system, space group | Monoclinic, P21/n |
Temperature (K) | 100 |
a, b, c (Å) | 11.5197 (6), 25.1585 (12), 11.9564 (6) |
β (°) | 90.719 (5) |
V (Å3) | 3464.9 (3) |
Z | 8 |
Radiation type | Mo Kα |
µ (mm−1) | 0.09 |
Crystal size (mm) | 0.35 × 0.35 × 0.10 |
Data collection | |
Diffractometer | Agilent SuperNova Dual diffractometer with an Atlas detector |
Absorption correction | Multi-scan (CrysAlis PRO; Agilent, 2011) |
Tmin, Tmax | 0.971, 0.992 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 20450, 7990, 5348 |
Rint | 0.055 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.060, 0.156, 1.04 |
No. of reflections | 7990 |
No. of parameters | 503 |
No. of restraints | 4 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.33, −0.25 |
Computer programs: CrysAlis PRO (Agilent, 2011), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 (Farrugia, 1997) and DIAMOND (Brandenburg, 2006), publCIF (Westrip, 2010).
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2···N6 | 0.89 (1) | 2.25 (2) | 3.081 (3) | 157 (3) |
N5—H3···N1 | 0.88 (1) | 2.36 (1) | 3.213 (3) | 162 (2) |
N2—H1···O1i | 0.878 (17) | 2.56 (2) | 3.271 (3) | 138.9 (17) |
Symmetry code: (i) x+1/2, −y+1/2, z+1/2. |
Footnotes
‡Additional correspondence author, e-mail: aasiri2@kau.edu.sa.
Acknowledgements
The authors are thankful to the Center of Excellence for Advanced Materials Research and the Chemistry Department at King Abdulaziz University for providing the research facilities. We also thank the Ministry of Higher Education (Malaysia) for funding structural studies through the High-Impact Research scheme (UM.C/HIR/MOHE/SC/12).
References
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In connection with structural studies on phenanthrene compounds (Asiri et al., 2011a; Asiri et al., 2011b; Al-Youbi et al., 2012), of interest owing to biological activity (Wang et al. 2010; Rostom et al., 2011), a new monoclinic polymorph of the title compound 3-amino-1-(4-methoxyphenyl)-9,10-dihydrophenanthrene-2,4-dicarbonitrile (I) was found. Previously (I) was isolated in the monoclinic space group P21/c with Z = 4 (Asiri et al., 2011b). The new form crystallizes in the monoclinic space group P21/n with two independent molecules in the asymmetric unit, Fig. 1.
The conformations of the two independent molecules in (I) differ in two regions of the molecule. In the N1-containing molecule, the cyclohexa-1,3-diene ring has a screw-boat conformation as defined by the following geometric parameters (Cremer & Pople, 1975): puckering parameters q2 = 0.527 (2) Å and q3 = 0.156 (2) Å, and amplitudes: Q = 0.549 (2) Å, θ = 73.5 (2)° and φ2 = 93.2 (3)°. By contrast, in the N4-containing molecule, the conformation is based on a distorted half-chair with puckering parameters: q2 = 0.530 (2) Å, q3 = -0.178 (2) Å, Q = 0.558 (2) Å, θ = 108.5 (2)° and φ2 = 265.8 (3) °. In the P21/c polymorph of (I), the conformation matches more closely a distorted half-chair.
For the first independent molecule, the benzene rings of the 1,2-dihydronaphthalene and methoxybenzene residues form dihedral angles of 33.19 (10) and 49.22 (10)°, respectively, with the amino-benzene ring, indicating non-planarity in the fused ring system and a twist of the methoxybenzene out of the plane of the benzene ring to which it is connected. The comparable angles for the second independent molecule are 30.6 (10) and 73.27 (10)°, respectively. Figure 2 shows an overlay diagram for the three independent molecules of (I) characterized in the two polymorphs.
In the crystal structure of (I) the two independent molecules self-associate via N—H···N hydrogen bonds to generate 12-membered {···HNC3N}2 synthons, Fig. 3 and Table 1. One of the amino-H atoms forms a hydrogen bond to a methoxy-O atom leading to the formation of a supramolecular tape along [1 0 1], Fig. 3 and Table 1. The fourth independent amino-H atom does not participate in a significant intermolecular interaction. In the previously described P21/c form of (I), supramolecular arrays with a zigzag topology were formed through N—H···N hydrogen bonds, leading to {···HNC3N}2 synthons, as well N—H···O(methoxy) hydrogen bonding.