organic compounds
2-Methylpyridinium 5-(2,4-dinitrophenyl)-1,3-dimethylbarbiturate
aPG and Research Department of Chemistry, Seethalakshmi Ramaswami College, Tiruchirappalli 620 002, Tamil Nadu, India
*Correspondence e-mail: kalaivbalaj@yahoo.co.in
In the title molecular salt [systematic name: 2-methylpyridinium 5-(2,4-dinitrophenyl)-1,3-dimethyl-2,6-dioxo-1,2,3,6-tetrahydropyrimidin-4-olate], C6H8N+·C12H9N4O7−, the cation and anion are linked a through strong N—H⋯O hydrogen bond. In the crystal, C—H⋯O interactions link the ions, generating a chain along [010].
Related literature
For the biological properties of molecules containing pyridine and pyrimidine units, see: Terekhova & Scriba (2007); Comins et al. (2008); Hueso et al. (2003); Jain et al. (2006). For the structures of similar to the title compound, see: Kalaivani & Malarvizhi (2009); Kalaivani & Buvaneswari (2010); Buvaneswari & Kalaivani (2011).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2004); cell SAINT (Bruker, 2004); data reduction: SAINT; program(s) used to solve structure: SIR92 (Altomare et al., 1993); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997) and Mercury (Macrae et al., 2008); software used to prepare material for publication: PLATON (Spek, 2009).
Supporting information
10.1107/S1600536812009440/bv2197sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536812009440/bv2197Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536812009440/bv2197Isup3.cml
1-Chloro-2,4-dinitrobenzene(2.02 g,0.01 mol) was dissolved in 20 ml of ethanol. 1,3-Dimethylbarbituric acid (1.56 g,0.01 mol) was also dissolved in 15 ml of ethanol. These two solutions were mixed and to this mixture a five fold excess of 2-methylpyridine (4.65 g, 0.05 mol) was added and the resulting blood red coloured solution was shaken well for about three hours and kept as such at 25 /%C. Dark shiny maroon red coloured crystals were deposited from the solution after seventy two hours. The crystals were filtered and washed with 30 ml of ether. The crystals were powdered well and washed with 40 ml of ether to remove the unreacted reactants and finally with 10 ml of ethanol. The pure powder was recrystallized from hot ethanol (Yield: 75%; m.p.; 451 K). The crystals for X-ray analysis were obtained by slow evaporation of ethanol at room temperature.
All of the H atoms were placed in their calculated positions and then refined using the riding model with C—H lengths of 0.93Å (CH), 0.96Å (CH2) or 0.98Å (CH3) and an N—H distance of 0.86 Å. The isotropic displacement parameters for these atoms were set to 1.2 (CH, and NH) or 1.50 times Ueq (CH3) of the parent atom.
Many molecules containing the pyridine moiety exhibit notable biological activity (Terekhova & Scriba, 2007; Comins et al., 2008). Molecules with pyrimidine ring residues are also biologically active (Hueso et al., 2003; Jain et al., 2006). The title molecular salt comprises of both pyrimidine (barbiturate moiety) and pyridine (2-methyl pyridinium) moieties and hence expected to have significant biological activity. Good crystallinity of the title compound prompted us to undertake single-crystal X-ray studies. The bond lengths and bond angles of the barbiturate residue of the molecular salt reported in the present article are compatible with those of related
synthesized in our laboratory earlier (Kalaivani & Malarvizhi, 2009; Kalaivani & Buvaneswari, 2010; Buvaneswari & Kalaivani, 2011). The structure of the molecular salt of the present work is shown in scheme 1. The ORTEP view showing 30% probability displacement ellipsoids is indicated in Fig.1. In the title molecule, the one dimensional zigzag chains which run along [010] direction are linked through C13—H13···O1, C17—H17···O1, C16—H16···O6, C13—H13···O3 and C15—H15···O2 weak interactions thus generating a three dimensional network and hence constituting the molecular packing of the crystal (Fig. 2). The 2,4-dinitrophenyl ring and 1,3-dimethylbarbiturate ring of the title molecule are not perfectly planar and the dihedral angle observed between them is 44.54 (2)degree.For the biological properties of molecules containing pyridine and pyrimidine units, see: Terekhova & Scriba (2007); Comins et al. (2008); Hueso et al. (2003); Jain et al. (2006). For the structures of
similar to the title compound, see: Kalaivani & Malarvizhi (2009); Kalaivani & Buvaneswari (2010); Buvaneswari & Kalaivani (2011).Data collection: APEX2 (Bruker, 2004); cell
APEX2 and SAINT (Bruker, 2004); data reduction: SAINT (Bruker, 2004); program(s) used to solve structure: SIR92 (Altomare et al., 1993); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997) and Mercury (Macrae et al., 2008); software used to prepare material for publication: PLATON (Spek, 2009).Fig. 1. The asymmetric unit of title molecule showing 30% probability displacement ellipsoids. | |
Fig. 2. Packing view of title molecule showing the chains in the [010] direction. |
C6H8N+·C12H9N4O7− | F(000) = 864 |
Mr = 415.37 | Dx = 1.439 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2yn | Cell parameters from 6197 reflections |
a = 12.8242 (8) Å | θ = 2.9–25.3° |
b = 7.0696 (5) Å | µ = 0.11 mm−1 |
c = 21.5409 (14) Å | T = 293 K |
β = 101.029 (2)° | Block, red |
V = 1916.9 (2) Å3 | 0.30 × 0.25 × 0.15 mm |
Z = 4 |
Bruker Kappa APEXII CCD diffractometer | 3527 independent reflections |
Radiation source: fine-focus sealed tube | 2790 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.000 |
ω and φ scan | θmax = 25.4°, θmin = 3.0° |
Absorption correction: multi-scan (SADABS; Bruker, 2004) | h = −15→15 |
Tmin = 0.917, Tmax = 0.983 | k = 0→8 |
3527 measured reflections | l = 0→25 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.036 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.099 | H-atom parameters constrained |
S = 1.04 | w = 1/[σ2(Fo2) + (0.045P)2 + 0.4365P] where P = (Fo2 + 2Fc2)/3 |
3527 reflections | (Δ/σ)max < 0.001 |
275 parameters | Δρmax = 0.15 e Å−3 |
0 restraints | Δρmin = −0.17 e Å−3 |
C6H8N+·C12H9N4O7− | V = 1916.9 (2) Å3 |
Mr = 415.37 | Z = 4 |
Monoclinic, P21/n | Mo Kα radiation |
a = 12.8242 (8) Å | µ = 0.11 mm−1 |
b = 7.0696 (5) Å | T = 293 K |
c = 21.5409 (14) Å | 0.30 × 0.25 × 0.15 mm |
β = 101.029 (2)° |
Bruker Kappa APEXII CCD diffractometer | 3527 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2004) | 2790 reflections with I > 2σ(I) |
Tmin = 0.917, Tmax = 0.983 | Rint = 0.000 |
3527 measured reflections |
R[F2 > 2σ(F2)] = 0.036 | 0 restraints |
wR(F2) = 0.099 | H-atom parameters constrained |
S = 1.04 | Δρmax = 0.15 e Å−3 |
3527 reflections | Δρmin = −0.17 e Å−3 |
275 parameters |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
O1 | 0.25790 (8) | 0.59806 (19) | 0.13771 (6) | 0.0652 (4) | |
O2 | 0.58313 (8) | 0.84817 (17) | 0.13910 (5) | 0.0521 (3) | |
O3 | 0.49962 (8) | 0.55652 (17) | 0.31960 (5) | 0.0550 (3) | |
O4 | 0.53244 (10) | 0.9752 (2) | 0.33842 (6) | 0.0694 (4) | |
O5 | 0.60991 (12) | 0.8263 (2) | 0.42199 (6) | 0.0831 (4) | |
O6 | 0.98964 (12) | 0.8224 (3) | 0.43012 (8) | 0.1054 (6) | |
O7 | 1.04967 (11) | 0.7451 (2) | 0.34758 (8) | 0.0851 (5) | |
N1 | 0.41979 (10) | 0.72838 (19) | 0.13974 (6) | 0.0457 (3) | |
N2 | 0.37859 (9) | 0.58307 (18) | 0.22914 (6) | 0.0453 (3) | |
N3 | 0.60166 (12) | 0.8717 (2) | 0.36639 (6) | 0.0552 (4) | |
N4 | 0.97702 (13) | 0.7814 (2) | 0.37450 (9) | 0.0678 (5) | |
C1 | 0.38684 (15) | 0.7872 (3) | 0.07370 (8) | 0.0711 (6) | |
H1A | 0.4128 | 0.9125 | 0.0685 | 0.107* | 0.62 (3) |
H1B | 0.3107 | 0.7867 | 0.0625 | 0.107* | 0.62 (3) |
H1C | 0.4154 | 0.7011 | 0.0468 | 0.107* | 0.62 (3) |
H1C1 | 0.4484 | 0.8199 | 0.0567 | 0.107* | 0.38 (3) |
H1C2 | 0.3408 | 0.8951 | 0.0715 | 0.107* | 0.38 (3) |
H1C3 | 0.3497 | 0.6853 | 0.0496 | 0.107* | 0.38 (3) |
C2 | 0.34662 (11) | 0.6346 (2) | 0.16695 (7) | 0.0461 (4) | |
C3 | 0.30525 (14) | 0.4711 (3) | 0.25827 (10) | 0.0714 (6) | |
H3A | 0.2900 | 0.5371 | 0.2945 | 0.107* | |
H3B | 0.3370 | 0.3510 | 0.2713 | 0.107* | |
H3C | 0.2405 | 0.4516 | 0.2282 | 0.107* | |
C4 | 0.48022 (11) | 0.6176 (2) | 0.26412 (7) | 0.0404 (3) | |
C5 | 0.55251 (10) | 0.71463 (19) | 0.23462 (6) | 0.0363 (3) | |
C6 | 0.52461 (11) | 0.7686 (2) | 0.17015 (7) | 0.0390 (3) | |
C7 | 0.65998 (11) | 0.74854 (18) | 0.26967 (6) | 0.0351 (3) | |
C8 | 0.68428 (11) | 0.8054 (2) | 0.33312 (7) | 0.0412 (3) | |
C9 | 0.78652 (12) | 0.8162 (2) | 0.36788 (7) | 0.0476 (4) | |
H9 | 0.7991 | 0.8498 | 0.4104 | 0.057* | |
C10 | 0.86841 (12) | 0.7759 (2) | 0.33778 (8) | 0.0472 (4) | |
C11 | 0.85129 (12) | 0.7277 (2) | 0.27469 (8) | 0.0466 (4) | |
H11 | 0.9082 | 0.7047 | 0.2547 | 0.056* | |
C12 | 0.74849 (11) | 0.7141 (2) | 0.24194 (7) | 0.0405 (3) | |
H12 | 0.7372 | 0.6805 | 0.1994 | 0.049* | |
N5 | 0.61757 (9) | 0.36331 (18) | 0.41383 (6) | 0.0434 (3) | |
H5A | 0.5829 | 0.4153 | 0.3800 | 0.052* | |
C13 | 0.44507 (13) | 0.3047 (3) | 0.43878 (8) | 0.0616 (5) | |
H13A | 0.4246 | 0.4261 | 0.4205 | 0.092* | |
H13B | 0.4158 | 0.2883 | 0.4762 | 0.092* | |
H13C | 0.4187 | 0.2072 | 0.4089 | 0.092* | |
C14 | 0.56244 (12) | 0.2933 (2) | 0.45537 (7) | 0.0447 (4) | |
C15 | 0.72358 (12) | 0.3570 (2) | 0.42194 (8) | 0.0530 (4) | |
H15 | 0.7579 | 0.4067 | 0.3913 | 0.064* | |
C16 | 0.78080 (14) | 0.2779 (3) | 0.47504 (9) | 0.0638 (5) | |
H16 | 0.8545 | 0.2717 | 0.4811 | 0.077* | |
C17 | 0.72821 (16) | 0.2074 (3) | 0.51962 (9) | 0.0686 (5) | |
H17 | 0.7664 | 0.1546 | 0.5566 | 0.082* | |
C18 | 0.61948 (15) | 0.2143 (3) | 0.50993 (8) | 0.0602 (5) | |
H18 | 0.5841 | 0.1655 | 0.5403 | 0.072* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0384 (6) | 0.0833 (9) | 0.0665 (7) | −0.0017 (6) | −0.0081 (5) | −0.0018 (7) |
O2 | 0.0521 (6) | 0.0640 (7) | 0.0406 (6) | −0.0043 (5) | 0.0101 (5) | 0.0080 (5) |
O3 | 0.0508 (6) | 0.0660 (8) | 0.0458 (6) | −0.0074 (5) | 0.0030 (5) | 0.0188 (5) |
O4 | 0.0682 (8) | 0.0715 (9) | 0.0722 (8) | 0.0120 (7) | 0.0225 (7) | −0.0144 (7) |
O5 | 0.1004 (10) | 0.1142 (12) | 0.0405 (7) | −0.0185 (9) | 0.0278 (7) | −0.0079 (7) |
O6 | 0.0762 (10) | 0.1480 (16) | 0.0739 (10) | −0.0106 (10) | −0.0311 (8) | −0.0053 (10) |
O7 | 0.0414 (7) | 0.0957 (11) | 0.1117 (12) | −0.0104 (7) | −0.0020 (8) | 0.0226 (9) |
N1 | 0.0428 (7) | 0.0528 (8) | 0.0379 (7) | 0.0017 (6) | −0.0018 (5) | 0.0019 (6) |
N2 | 0.0368 (6) | 0.0482 (8) | 0.0497 (7) | −0.0033 (5) | 0.0050 (5) | 0.0045 (6) |
N3 | 0.0637 (9) | 0.0614 (9) | 0.0440 (8) | −0.0126 (8) | 0.0187 (7) | −0.0133 (7) |
N4 | 0.0493 (9) | 0.0633 (10) | 0.0807 (12) | −0.0116 (7) | −0.0128 (8) | 0.0157 (9) |
C1 | 0.0662 (11) | 0.0939 (15) | 0.0451 (10) | −0.0040 (10) | −0.0097 (8) | 0.0135 (10) |
C2 | 0.0386 (8) | 0.0465 (9) | 0.0505 (9) | 0.0043 (7) | 0.0021 (7) | −0.0032 (7) |
C3 | 0.0498 (10) | 0.0804 (14) | 0.0828 (13) | −0.0159 (9) | 0.0093 (9) | 0.0196 (11) |
C4 | 0.0389 (7) | 0.0388 (8) | 0.0423 (8) | 0.0018 (6) | 0.0048 (6) | 0.0017 (6) |
C5 | 0.0374 (7) | 0.0344 (7) | 0.0360 (7) | 0.0018 (6) | 0.0047 (6) | −0.0009 (6) |
C6 | 0.0398 (7) | 0.0373 (8) | 0.0393 (8) | 0.0034 (6) | 0.0059 (6) | −0.0030 (6) |
C7 | 0.0399 (7) | 0.0289 (7) | 0.0356 (7) | −0.0002 (6) | 0.0050 (6) | 0.0019 (5) |
C8 | 0.0468 (8) | 0.0383 (8) | 0.0384 (8) | −0.0052 (6) | 0.0084 (6) | 0.0009 (6) |
C9 | 0.0556 (9) | 0.0452 (9) | 0.0378 (8) | −0.0107 (7) | −0.0018 (7) | 0.0024 (7) |
C10 | 0.0413 (8) | 0.0397 (8) | 0.0541 (9) | −0.0072 (7) | −0.0073 (7) | 0.0089 (7) |
C11 | 0.0395 (8) | 0.0399 (8) | 0.0607 (10) | 0.0014 (6) | 0.0102 (7) | 0.0050 (7) |
C12 | 0.0425 (7) | 0.0374 (8) | 0.0411 (8) | 0.0030 (6) | 0.0062 (6) | −0.0019 (6) |
N5 | 0.0440 (7) | 0.0465 (7) | 0.0380 (6) | −0.0003 (6) | 0.0035 (5) | 0.0016 (6) |
C13 | 0.0480 (9) | 0.0805 (13) | 0.0576 (10) | −0.0059 (9) | 0.0132 (8) | 0.0028 (9) |
C14 | 0.0498 (8) | 0.0434 (9) | 0.0402 (8) | −0.0049 (7) | 0.0070 (7) | −0.0030 (7) |
C15 | 0.0449 (9) | 0.0567 (10) | 0.0574 (10) | −0.0032 (7) | 0.0097 (7) | −0.0012 (8) |
C16 | 0.0472 (9) | 0.0676 (12) | 0.0707 (12) | 0.0041 (8) | −0.0040 (9) | −0.0013 (10) |
C17 | 0.0714 (12) | 0.0662 (12) | 0.0584 (11) | 0.0080 (10) | −0.0121 (9) | 0.0101 (9) |
C18 | 0.0725 (12) | 0.0598 (11) | 0.0466 (9) | −0.0047 (9) | 0.0071 (8) | 0.0110 (8) |
O1—C2 | 1.2181 (17) | C5—C7 | 1.4591 (18) |
O2—C6 | 1.2325 (17) | C7—C12 | 1.401 (2) |
O3—C4 | 1.2501 (17) | C7—C8 | 1.4014 (19) |
O4—N3 | 1.2174 (19) | C8—C9 | 1.382 (2) |
O5—N3 | 1.2248 (18) | C9—C10 | 1.366 (2) |
O6—N4 | 1.213 (2) | C9—H9 | 0.9300 |
O7—N4 | 1.215 (2) | C10—C11 | 1.377 (2) |
N1—C2 | 1.369 (2) | C11—C12 | 1.374 (2) |
N1—C6 | 1.4071 (18) | C11—H11 | 0.9300 |
N1—C1 | 1.465 (2) | C12—H12 | 0.9300 |
N2—C2 | 1.3728 (19) | N5—C14 | 1.3370 (19) |
N2—C4 | 1.3966 (18) | N5—C15 | 1.3379 (19) |
N2—C3 | 1.460 (2) | N5—H5A | 0.8600 |
N3—C8 | 1.465 (2) | C13—C14 | 1.481 (2) |
N4—C10 | 1.465 (2) | C13—H13A | 0.9600 |
C1—H1A | 0.9600 | C13—H13B | 0.9600 |
C1—H1B | 0.9600 | C13—H13C | 0.9600 |
C1—H1C | 0.9600 | C14—C18 | 1.378 (2) |
C1—H1C1 | 0.9599 | C15—C16 | 1.356 (2) |
C1—H1C2 | 0.9600 | C15—H15 | 0.9300 |
C1—H1C3 | 0.9600 | C16—C17 | 1.369 (3) |
C3—H3A | 0.9600 | C16—H16 | 0.9300 |
C3—H3B | 0.9600 | C17—C18 | 1.371 (3) |
C3—H3C | 0.9600 | C17—H17 | 0.9300 |
C4—C5 | 1.400 (2) | C18—H18 | 0.9300 |
C5—C6 | 1.418 (2) | ||
C2—N1—C6 | 124.79 (12) | C8—C7—C5 | 124.30 (13) |
C2—N1—C1 | 117.35 (13) | C9—C8—C7 | 123.72 (14) |
C6—N1—C1 | 117.85 (13) | C9—C8—N3 | 114.66 (13) |
C2—N2—C4 | 123.63 (13) | C7—C8—N3 | 121.48 (13) |
C2—N2—C3 | 117.81 (13) | C10—C9—C8 | 117.86 (14) |
C4—N2—C3 | 118.32 (13) | C10—C9—H9 | 121.1 |
O4—N3—O5 | 124.05 (15) | C8—C9—H9 | 121.1 |
O4—N3—C8 | 118.52 (13) | C9—C10—C11 | 121.88 (13) |
O5—N3—C8 | 117.33 (15) | C9—C10—N4 | 118.44 (15) |
O6—N4—O7 | 123.52 (16) | C11—C10—N4 | 119.67 (16) |
O6—N4—C10 | 118.22 (18) | C12—C11—C10 | 118.68 (15) |
O7—N4—C10 | 118.26 (17) | C12—C11—H11 | 120.7 |
N1—C1—H1A | 109.5 | C10—C11—H11 | 120.7 |
N1—C1—H1B | 109.5 | C11—C12—C7 | 123.00 (14) |
N1—C1—H1C | 109.5 | C11—C12—H12 | 118.5 |
N1—C1—H1C1 | 109.5 | C7—C12—H12 | 118.5 |
N1—C1—H1C2 | 109.5 | C14—N5—C15 | 123.68 (13) |
H1C1—C1—H1C2 | 109.5 | C14—N5—H5A | 118.2 |
N1—C1—H1C3 | 109.5 | C15—N5—H5A | 118.2 |
H1C1—C1—H1C3 | 109.5 | C14—C13—H13A | 109.5 |
H1C2—C1—H1C3 | 109.5 | C14—C13—H13B | 109.5 |
O1—C2—N1 | 122.01 (14) | H13A—C13—H13B | 109.5 |
O1—C2—N2 | 121.56 (15) | C14—C13—H13C | 109.5 |
N1—C2—N2 | 116.43 (12) | H13A—C13—H13C | 109.5 |
N2—C3—H3A | 109.5 | H13B—C13—H13C | 109.5 |
N2—C3—H3B | 109.5 | N5—C14—C18 | 117.29 (15) |
H3A—C3—H3B | 109.5 | N5—C14—C13 | 117.48 (13) |
N2—C3—H3C | 109.5 | C18—C14—C13 | 125.23 (15) |
H3A—C3—H3C | 109.5 | N5—C15—C16 | 119.76 (16) |
H3B—C3—H3C | 109.5 | N5—C15—H15 | 120.1 |
O3—C4—N2 | 116.74 (13) | C16—C15—H15 | 120.1 |
O3—C4—C5 | 125.13 (13) | C15—C16—C17 | 118.83 (17) |
N2—C4—C5 | 118.13 (13) | C15—C16—H16 | 120.6 |
C4—C5—C6 | 120.76 (12) | C17—C16—H16 | 120.6 |
C4—C5—C7 | 119.19 (12) | C16—C17—C18 | 120.25 (16) |
C6—C5—C7 | 119.92 (12) | C16—C17—H17 | 119.9 |
O2—C6—N1 | 117.79 (13) | C18—C17—H17 | 119.9 |
O2—C6—C5 | 126.04 (13) | C17—C18—C14 | 120.18 (17) |
N1—C6—C5 | 116.17 (13) | C17—C18—H18 | 119.9 |
C12—C7—C8 | 114.74 (13) | C14—C18—H18 | 119.9 |
C12—C7—C5 | 120.86 (13) | ||
C6—N1—C2—O1 | −177.51 (15) | C5—C7—C8—C9 | 172.31 (14) |
C1—N1—C2—O1 | 1.1 (2) | C12—C7—C8—N3 | 171.51 (13) |
C6—N1—C2—N2 | 2.3 (2) | C5—C7—C8—N3 | −12.2 (2) |
C1—N1—C2—N2 | −179.10 (15) | O4—N3—C8—C9 | 134.74 (15) |
C4—N2—C2—O1 | 178.35 (15) | O5—N3—C8—C9 | −41.7 (2) |
C3—N2—C2—O1 | 4.1 (2) | O4—N3—C8—C7 | −41.1 (2) |
C4—N2—C2—N1 | −1.5 (2) | O5—N3—C8—C7 | 142.42 (15) |
C3—N2—C2—N1 | −175.71 (15) | C7—C8—C9—C10 | 2.6 (2) |
C2—N2—C4—O3 | −177.37 (14) | N3—C8—C9—C10 | −173.16 (14) |
C3—N2—C4—O3 | −3.1 (2) | C8—C9—C10—C11 | 0.6 (2) |
C2—N2—C4—C5 | 1.8 (2) | C8—C9—C10—N4 | −178.24 (14) |
C3—N2—C4—C5 | 176.00 (15) | O6—N4—C10—C9 | −0.4 (2) |
O3—C4—C5—C6 | 176.28 (14) | O7—N4—C10—C9 | 179.87 (15) |
N2—C4—C5—C6 | −2.8 (2) | O6—N4—C10—C11 | −179.24 (17) |
O3—C4—C5—C7 | 0.5 (2) | O7—N4—C10—C11 | 1.0 (2) |
N2—C4—C5—C7 | −178.55 (12) | C9—C10—C11—C12 | −2.1 (2) |
C2—N1—C6—O2 | 177.41 (14) | N4—C10—C11—C12 | 176.75 (14) |
C1—N1—C6—O2 | −1.2 (2) | C10—C11—C12—C7 | 0.5 (2) |
C2—N1—C6—C5 | −3.3 (2) | C8—C7—C12—C11 | 2.4 (2) |
C1—N1—C6—C5 | 178.11 (14) | C5—C7—C12—C11 | −174.04 (13) |
C4—C5—C6—O2 | −177.32 (14) | C15—N5—C14—C18 | 1.4 (2) |
C7—C5—C6—O2 | −1.6 (2) | C15—N5—C14—C13 | −177.90 (16) |
C4—C5—C6—N1 | 3.4 (2) | C14—N5—C15—C16 | −0.7 (2) |
C7—C5—C6—N1 | 179.18 (12) | N5—C15—C16—C17 | −0.6 (3) |
C4—C5—C7—C12 | 133.84 (15) | C15—C16—C17—C18 | 1.1 (3) |
C6—C5—C7—C12 | −41.96 (19) | C16—C17—C18—C14 | −0.4 (3) |
C4—C5—C7—C8 | −42.2 (2) | N5—C14—C18—C17 | −0.8 (3) |
C6—C5—C7—C8 | 142.00 (14) | C13—C14—C18—C17 | 178.41 (18) |
C12—C7—C8—C9 | −3.9 (2) |
D—H···A | D—H | H···A | D···A | D—H···A |
N5—H5A···O3 | 0.86 | 1.82 | 2.6645 (16) | 168 |
C13—H13B···O5i | 0.96 | 2.42 | 3.340 (2) | 161 |
C13—H13C···O1ii | 0.96 | 2.42 | 3.160 (2) | 134 |
C15—H15···O2iii | 0.93 | 2.29 | 3.021 (2) | 135 |
C16—H16···O6iv | 0.93 | 2.58 | 3.323 (2) | 138 |
C17—H17···O1v | 0.93 | 2.52 | 3.303 (2) | 143 |
Symmetry codes: (i) −x+1, −y+1, −z+1; (ii) −x+1/2, y−1/2, −z+1/2; (iii) −x+3/2, y−1/2, −z+1/2; (iv) −x+2, −y+1, −z+1; (v) x+1/2, −y+1/2, z+1/2. |
Experimental details
Crystal data | |
Chemical formula | C6H8N+·C12H9N4O7− |
Mr | 415.37 |
Crystal system, space group | Monoclinic, P21/n |
Temperature (K) | 293 |
a, b, c (Å) | 12.8242 (8), 7.0696 (5), 21.5409 (14) |
β (°) | 101.029 (2) |
V (Å3) | 1916.9 (2) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.11 |
Crystal size (mm) | 0.30 × 0.25 × 0.15 |
Data collection | |
Diffractometer | Bruker Kappa APEXII CCD |
Absorption correction | Multi-scan (SADABS; Bruker, 2004) |
Tmin, Tmax | 0.917, 0.983 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 3527, 3527, 2790 |
Rint | 0.000 |
(sin θ/λ)max (Å−1) | 0.604 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.036, 0.099, 1.04 |
No. of reflections | 3527 |
No. of parameters | 275 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.15, −0.17 |
Computer programs: APEX2 (Bruker, 2004), APEX2 and SAINT (Bruker, 2004), SAINT (Bruker, 2004), SIR92 (Altomare et al., 1993), SHELXL97 (Sheldrick, 2008), ORTEP-3 (Farrugia, 1997) and Mercury (Macrae et al., 2008), PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
N5—H5A···O3 | 0.86 | 1.82 | 2.6645 (16) | 168.4 |
C13—H13B···O5i | 0.96 | 2.42 | 3.340 (2) | 161.0 |
C13—H13C···O1ii | 0.96 | 2.42 | 3.160 (2) | 133.5 |
C15—H15···O2iii | 0.93 | 2.29 | 3.021 (2) | 134.5 |
C16—H16···O6iv | 0.93 | 2.58 | 3.323 (2) | 137.7 |
C17—H17···O1v | 0.93 | 2.52 | 3.303 (2) | 142.6 |
Symmetry codes: (i) −x+1, −y+1, −z+1; (ii) −x+1/2, y−1/2, −z+1/2; (iii) −x+3/2, y−1/2, −z+1/2; (iv) −x+2, −y+1, −z+1; (v) x+1/2, −y+1/2, z+1/2. |
Acknowledgements
The authors are thankful to the SAIF, IIT Madras, for the data collection.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Many molecules containing the pyridine moiety exhibit notable biological activity (Terekhova & Scriba, 2007; Comins et al., 2008). Molecules with pyrimidine ring residues are also biologically active (Hueso et al., 2003; Jain et al., 2006). The title molecular salt comprises of both pyrimidine (barbiturate moiety) and pyridine (2-methyl pyridinium) moieties and hence expected to have significant biological activity. Good crystallinity of the title compound prompted us to undertake single-crystal X-ray studies. The bond lengths and bond angles of the barbiturate residue of the molecular salt reported in the present article are compatible with those of related barbiturates synthesized in our laboratory earlier (Kalaivani & Malarvizhi, 2009; Kalaivani & Buvaneswari, 2010; Buvaneswari & Kalaivani, 2011). The structure of the molecular salt of the present work is shown in scheme 1. The ORTEP view showing 30% probability displacement ellipsoids is indicated in Fig.1. In the title molecule, the one dimensional zigzag chains which run along [010] direction are linked through C13—H13···O1, C17—H17···O1, C16—H16···O6, C13—H13···O3 and C15—H15···O2 weak interactions thus generating a three dimensional network and hence constituting the molecular packing of the crystal (Fig. 2). The 2,4-dinitrophenyl ring and 1,3-dimethylbarbiturate ring of the title molecule are not perfectly planar and the dihedral angle observed between them is 44.54 (2)degree.