organic compounds
1-(4-tert-Butylbenzyl)pyrimidine-2,4(1H,3H)-dione
aSchool of Chemistry and Chemical Engineering, Xuchang University, Xuchang, Henan Province 461000, People's Republic of China
*Correspondence e-mail: xcuwaller@163.com
The 15H18N2O2, contains two independent molecules with essentially identical geometries and conformations. The dihedral angles between the benzene and pyrimidine rings in the two molecules are 89.96 (11) and 73.91 (11)°. The six methyl groups are disordered over two sets of sites, with site occupancies of 0.545 (4):0.455 (4) and 0.542 (7):0.458 (7) in the two molecules. The is stabilized by N—H⋯O hydrogen bonds.
of the title compound, CRelated literature
For the bioactivity of pyrimidine-2,4(1H,3H)-diones, see: Konz (1997); Reinhard et al. (2004); Komori & Sanemitsu (2002); Radatus & Karimian (1993); Starrett et al. (1992). For a related structure, see: Li et al. (2005).
Experimental
Crystal data
|
Refinement
|
Data collection: SMART (Bruker, 1999); cell SAINT (Bruker, 1999); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.
Supporting information
10.1107/S1600536812008999/fj2505sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536812008999/fj2505Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536812008999/fj2505Isup3.cml
Uracil (0.56 g, 5 mmol) and anhydrous potassium carbonate (0.84 g, 6 mmol) were mixed in N,N-dimethylformamide (20 ml). A solution of 4-tertbutylbenzyl chloride (0.92 g, 5 mmol) in acetone (10 ml) was then added dropwise, with stirring, at room temperature, and the mixture was stirred for another 10 h and then refluxed for 4 h. The solvent was evaporated in vacuo and the residue was washed with water. The resulting white precipitate was filtered off and purified by
on silica gel (petroleum ether:ethyl acetate = 2:1). The title compound was recrystallized from ethanol and single crystals of (I) were obtained.All H atoms were placed in calculated positions, with C—H(aromatic) = 0.93 Å and C—H(aliphatic) = 0.96 Å or 0.97 Å, and included in the final cycles of
using a riding model, with Uiso(H) = 1.2Ueq(C).Derivatives of pyrimidine-2,4(1H,3H)-dione are very important molecules in biology and have many application in the areas of herbicide (Konz, 1997; Reinhard et al., 2004; Komori and Sanemitsu 2002). Derivatives of pyrimidine-2,4(1H,3H)-dione have also been developed as antiviral agents, shch as AZT which is the most widely used anti-AIDS drug (Radatus & Karimian, 1993) and stavudine which is the most widely used anti-HIV drug (Starrett et al., 1992). In order to discover further biologically active pyrimidine compounds, the title compound, (I), was synthesized and its
determined (Fig. 1).In the
of the title molecule, The contains two independent molecules, with essentially identical geometries and conformations. The dihedral angles between the benzene rings and the pyrimidine rings in the two molecules are 89.96 (0.11) and 73.91 (0.11)°. The six methyl groups are disordered over two positions, with site-occupancies of 0.545 (4):0.455 (4) and 0.542 (7):0.458 (7) in the two molecules. The is stabilized by N—H···O hydrogen bonds. For a related to the title compound, see: Li et al. (2005).For the bioactivity of pyrimidine-2,4(1H,3H)-diones, see: Konz (1997); Reinhard et al. (2004); Komori & Sanemitsu (2002); Radatus & Karimian (1993); Starrett et al. (1992). For a related structure, see: Li et al. (2005).
Data collection: SMART (Bruker, 1999); cell
SAINT (Bruker, 1999); data reduction: SAINT (Bruker, 1999); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).C15H18N2O2 | F(000) = 1104 |
Mr = 258.31 | Dx = 1.187 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 3207 reflections |
a = 20.853 (7) Å | θ = 2.3–22.9° |
b = 10.013 (4) Å | µ = 0.08 mm−1 |
c = 13.893 (5) Å | T = 294 K |
β = 94.915 (6)° | Prism, colourless |
V = 2890.2 (18) Å3 | 0.40 × 0.28 × 0.20 mm |
Z = 8 |
Bruker SMART CCD area-detector diffractometer | 5292 independent reflections |
Radiation source: fine-focus sealed tube | 2946 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.042 |
phi and ω scans | θmax = 25.4°, θmin = 1.0° |
Absorption correction: multi-scan (SADABS; Bruker, 1999) | h = −25→22 |
Tmin = 0.969, Tmax = 0.984 | k = −10→12 |
14804 measured reflections | l = −16→16 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.063 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.207 | H-atom parameters constrained |
S = 1.02 | w = 1/[σ2(Fo2) + (0.093P)2 + 1.8764P] where P = (Fo2 + 2Fc2)/3 |
5292 reflections | (Δ/σ)max = 0.016 |
351 parameters | Δρmax = 0.50 e Å−3 |
186 restraints | Δρmin = −0.31 e Å−3 |
C15H18N2O2 | V = 2890.2 (18) Å3 |
Mr = 258.31 | Z = 8 |
Monoclinic, P21/c | Mo Kα radiation |
a = 20.853 (7) Å | µ = 0.08 mm−1 |
b = 10.013 (4) Å | T = 294 K |
c = 13.893 (5) Å | 0.40 × 0.28 × 0.20 mm |
β = 94.915 (6)° |
Bruker SMART CCD area-detector diffractometer | 5292 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 1999) | 2946 reflections with I > 2σ(I) |
Tmin = 0.969, Tmax = 0.984 | Rint = 0.042 |
14804 measured reflections |
R[F2 > 2σ(F2)] = 0.063 | 186 restraints |
wR(F2) = 0.207 | H-atom parameters constrained |
S = 1.02 | Δρmax = 0.50 e Å−3 |
5292 reflections | Δρmin = −0.31 e Å−3 |
351 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
O1 | 0.59221 (12) | 0.8165 (2) | 1.02506 (16) | 0.0590 (7) | |
O2 | 0.63012 (14) | 0.5542 (3) | 1.28734 (17) | 0.0779 (8) | |
O3 | 0.47352 (10) | 0.14989 (19) | 0.74452 (13) | 0.0439 (5) | |
O4 | 0.54683 (10) | 0.11521 (19) | 0.44745 (14) | 0.0468 (6) | |
N1 | 0.61343 (12) | 0.6826 (2) | 1.15484 (16) | 0.0424 (6) | |
H1 | 0.5903 | 0.7343 | 1.1873 | 0.051* | |
N2 | 0.65534 (12) | 0.6327 (3) | 1.00998 (17) | 0.0436 (6) | |
N3 | 0.51352 (11) | 0.1350 (2) | 0.59833 (15) | 0.0352 (6) | |
H3 | 0.5018 | 0.0526 | 0.5959 | 0.042* | |
N4 | 0.56191 (11) | 0.3135 (2) | 0.52653 (16) | 0.0358 (6) | |
C1 | 0.61872 (14) | 0.7185 (3) | 1.0607 (2) | 0.0390 (7) | |
C2 | 0.64043 (16) | 0.5741 (3) | 1.2041 (2) | 0.0501 (8) | |
C3 | 0.67929 (17) | 0.4932 (3) | 1.1461 (2) | 0.0593 (9) | |
H3A | 0.7011 | 0.4196 | 1.1732 | 0.071* | |
C4 | 0.68399 (16) | 0.5235 (3) | 1.0539 (2) | 0.0545 (9) | |
H4 | 0.7080 | 0.4676 | 1.0174 | 0.065* | |
C5 | 0.65428 (15) | 0.6492 (4) | 0.9050 (2) | 0.0528 (9) | |
H5A | 0.6274 | 0.7256 | 0.8861 | 0.063* | |
H5B | 0.6343 | 0.5710 | 0.8742 | 0.063* | |
C6 | 0.71906 (16) | 0.6689 (3) | 0.8674 (2) | 0.0481 (8) | |
C7 | 0.7650 (2) | 0.7498 (5) | 0.9107 (3) | 0.0859 (13) | |
H7 | 0.7580 | 0.7906 | 0.9690 | 0.103* | |
C8 | 0.8220 (2) | 0.7726 (5) | 0.8696 (3) | 0.0951 (14) | |
H8 | 0.8522 | 0.8292 | 0.9014 | 0.114* | |
C9 | 0.83593 (18) | 0.7163 (4) | 0.7849 (3) | 0.0681 (10) | |
C10 | 0.78888 (19) | 0.6360 (4) | 0.7410 (3) | 0.0739 (11) | |
H10 | 0.7955 | 0.5968 | 0.6820 | 0.089* | |
C11 | 0.73176 (17) | 0.6115 (4) | 0.7819 (2) | 0.0622 (10) | |
H11 | 0.7014 | 0.5549 | 0.7504 | 0.075* | |
C12 | 0.8989 (2) | 0.7414 (6) | 0.7402 (4) | 0.1158 (13) | |
C13A | 0.8921 (5) | 0.7427 (14) | 0.6299 (6) | 0.1189 (13) | 0.455 (4) |
H13A | 0.8776 | 0.6568 | 0.6064 | 0.178* | 0.455 (4) |
H13B | 0.9331 | 0.7626 | 0.6065 | 0.178* | 0.455 (4) |
H13C | 0.8614 | 0.8096 | 0.6076 | 0.178* | 0.455 (4) |
C13B | 0.9136 (5) | 0.6293 (10) | 0.6679 (7) | 0.1189 (13) | 0.545 (4) |
H13D | 0.9127 | 0.5441 | 0.6995 | 0.178* | 0.545 (4) |
H13E | 0.9554 | 0.6436 | 0.6458 | 0.178* | 0.545 (4) |
H13F | 0.8818 | 0.6309 | 0.6137 | 0.178* | 0.545 (4) |
C14A | 0.9290 (6) | 0.8780 (10) | 0.7697 (9) | 0.1189 (13) | 0.455 (4) |
H14A | 0.8974 | 0.9470 | 0.7575 | 0.178* | 0.455 (4) |
H14B | 0.9649 | 0.8951 | 0.7327 | 0.178* | 0.455 (4) |
H14C | 0.9433 | 0.8768 | 0.8372 | 0.178* | 0.455 (4) |
C14B | 0.8930 (5) | 0.8728 (9) | 0.6871 (8) | 0.1189 (13) | 0.545 (4) |
H14D | 0.8604 | 0.8658 | 0.6343 | 0.178* | 0.545 (4) |
H14E | 0.9334 | 0.8945 | 0.6626 | 0.178* | 0.545 (4) |
H14F | 0.8815 | 0.9416 | 0.7305 | 0.178* | 0.545 (4) |
C15A | 0.9492 (5) | 0.6380 (12) | 0.7739 (9) | 0.1189 (13) | 0.455 (4) |
H15A | 0.9527 | 0.6333 | 0.8432 | 0.178* | 0.455 (4) |
H15B | 0.9901 | 0.6630 | 0.7523 | 0.178* | 0.455 (4) |
H15C | 0.9367 | 0.5523 | 0.7476 | 0.178* | 0.455 (4) |
C15B | 0.9545 (4) | 0.7453 (12) | 0.8190 (6) | 0.1189 (13) | 0.545 (4) |
H15D | 0.9494 | 0.8209 | 0.8601 | 0.178* | 0.545 (4) |
H15E | 0.9944 | 0.7526 | 0.7899 | 0.178* | 0.545 (4) |
H15F | 0.9545 | 0.6648 | 0.8565 | 0.178* | 0.545 (4) |
C16 | 0.54110 (14) | 0.1835 (3) | 0.51971 (19) | 0.0349 (7) | |
C17 | 0.50240 (14) | 0.2044 (3) | 0.68156 (19) | 0.0356 (7) | |
C18 | 0.52587 (15) | 0.3387 (3) | 0.6835 (2) | 0.0428 (7) | |
H18 | 0.5225 | 0.3917 | 0.7378 | 0.051* | |
C19 | 0.55269 (14) | 0.3876 (3) | 0.6071 (2) | 0.0418 (7) | |
H19 | 0.5658 | 0.4764 | 0.6086 | 0.050* | |
C20 | 0.59296 (14) | 0.3704 (3) | 0.4448 (2) | 0.0416 (7) | |
H20A | 0.5894 | 0.4669 | 0.4464 | 0.050* | |
H20B | 0.5706 | 0.3393 | 0.3848 | 0.050* | |
C21 | 0.66279 (15) | 0.3322 (3) | 0.4470 (2) | 0.0423 (7) | |
C22 | 0.68630 (18) | 0.2626 (3) | 0.3729 (2) | 0.0585 (9) | |
H22 | 0.6582 | 0.2355 | 0.3210 | 0.070* | |
C23 | 0.7508 (2) | 0.2317 (4) | 0.3736 (3) | 0.0702 (11) | |
H23 | 0.7649 | 0.1841 | 0.3220 | 0.084* | |
C24 | 0.79479 (18) | 0.2687 (4) | 0.4475 (3) | 0.0666 (10) | |
C25 | 0.7703 (2) | 0.3357 (5) | 0.5223 (3) | 0.0950 (15) | |
H25 | 0.7980 | 0.3605 | 0.5752 | 0.114* | |
C26 | 0.70607 (19) | 0.3674 (5) | 0.5218 (3) | 0.0794 (13) | |
H26 | 0.6919 | 0.4141 | 0.5738 | 0.095* | |
C27 | 0.8656 (2) | 0.2326 (5) | 0.4482 (4) | 0.1145 (6) | |
C28A | 0.8853 (5) | 0.2512 (12) | 0.3424 (7) | 0.1154 (5) | 0.458 (7) |
H28A | 0.8621 | 0.1884 | 0.3004 | 0.173* | 0.458 (7) |
H28B | 0.9307 | 0.2362 | 0.3413 | 0.173* | 0.458 (7) |
H28C | 0.8751 | 0.3404 | 0.3209 | 0.173* | 0.458 (7) |
C28B | 0.8862 (5) | 0.1729 (11) | 0.3544 (7) | 0.1154 (5) | 0.542 (7) |
H28D | 0.8756 | 0.0796 | 0.3516 | 0.173* | 0.542 (7) |
H28E | 0.9319 | 0.1834 | 0.3524 | 0.173* | 0.542 (7) |
H28F | 0.8643 | 0.2180 | 0.3003 | 0.173* | 0.542 (7) |
C29A | 0.9086 (5) | 0.3213 (11) | 0.5155 (8) | 0.1154 (5) | 0.458 (7) |
H29A | 0.8937 | 0.4119 | 0.5099 | 0.173* | 0.458 (7) |
H29B | 0.9520 | 0.3163 | 0.4980 | 0.173* | 0.458 (7) |
H29C | 0.9070 | 0.2915 | 0.5809 | 0.173* | 0.458 (7) |
C29B | 0.9078 (5) | 0.3574 (9) | 0.4697 (8) | 0.1154 (5) | 0.542 (7) |
H29D | 0.8969 | 0.4244 | 0.4217 | 0.173* | 0.542 (7) |
H29E | 0.9524 | 0.3337 | 0.4684 | 0.173* | 0.542 (7) |
H29F | 0.9006 | 0.3917 | 0.5324 | 0.173* | 0.542 (7) |
C30A | 0.8739 (5) | 0.0849 (8) | 0.4731 (8) | 0.1154 (5) | 0.542 (7) |
H30A | 0.8565 | 0.0672 | 0.5336 | 0.173* | 0.542 (7) |
H30B | 0.9188 | 0.0625 | 0.4781 | 0.173* | 0.542 (7) |
H30C | 0.8516 | 0.0319 | 0.4233 | 0.173* | 0.542 (7) |
C30B | 0.8809 (5) | 0.1323 (11) | 0.5311 (8) | 0.1154 (5) | 0.458 (7) |
H30D | 0.8788 | 0.1768 | 0.5919 | 0.173* | 0.458 (7) |
H30E | 0.9234 | 0.0969 | 0.5273 | 0.173* | 0.458 (7) |
H30F | 0.8502 | 0.0608 | 0.5257 | 0.173* | 0.458 (7) |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0835 (17) | 0.0448 (13) | 0.0513 (14) | 0.0173 (12) | 0.0200 (12) | 0.0114 (11) |
O2 | 0.113 (2) | 0.0759 (18) | 0.0492 (15) | 0.0231 (16) | 0.0290 (14) | 0.0220 (13) |
O3 | 0.0582 (13) | 0.0391 (12) | 0.0361 (11) | 0.0011 (10) | 0.0149 (10) | 0.0008 (9) |
O4 | 0.0661 (14) | 0.0362 (11) | 0.0408 (12) | −0.0098 (10) | 0.0205 (10) | −0.0108 (9) |
N1 | 0.0570 (16) | 0.0341 (13) | 0.0383 (14) | 0.0070 (12) | 0.0167 (11) | 0.0010 (11) |
N2 | 0.0482 (15) | 0.0469 (15) | 0.0373 (14) | 0.0059 (12) | 0.0135 (11) | −0.0004 (12) |
N3 | 0.0477 (14) | 0.0245 (12) | 0.0349 (13) | −0.0023 (10) | 0.0120 (11) | −0.0028 (10) |
N4 | 0.0442 (14) | 0.0264 (12) | 0.0379 (13) | −0.0043 (10) | 0.0091 (11) | −0.0016 (10) |
C1 | 0.0461 (18) | 0.0343 (16) | 0.0377 (16) | −0.0001 (14) | 0.0105 (13) | 0.0009 (13) |
C2 | 0.065 (2) | 0.0451 (18) | 0.0418 (18) | 0.0046 (16) | 0.0123 (15) | 0.0103 (15) |
C3 | 0.072 (2) | 0.052 (2) | 0.055 (2) | 0.0218 (17) | 0.0134 (17) | 0.0121 (16) |
C4 | 0.063 (2) | 0.0496 (19) | 0.053 (2) | 0.0193 (17) | 0.0166 (16) | −0.0026 (16) |
C5 | 0.0477 (19) | 0.074 (2) | 0.0381 (17) | 0.0025 (17) | 0.0093 (14) | −0.0032 (16) |
C6 | 0.0503 (19) | 0.0573 (19) | 0.0381 (16) | −0.0006 (16) | 0.0106 (14) | −0.0018 (15) |
C7 | 0.078 (3) | 0.117 (3) | 0.066 (2) | −0.027 (2) | 0.029 (2) | −0.038 (2) |
C8 | 0.079 (3) | 0.126 (4) | 0.083 (3) | −0.041 (3) | 0.028 (2) | −0.030 (3) |
C9 | 0.063 (2) | 0.085 (3) | 0.059 (2) | −0.007 (2) | 0.0228 (18) | 0.002 (2) |
C10 | 0.074 (3) | 0.094 (3) | 0.058 (2) | −0.005 (2) | 0.0288 (19) | −0.014 (2) |
C11 | 0.063 (2) | 0.074 (2) | 0.051 (2) | −0.0068 (19) | 0.0179 (17) | −0.0138 (18) |
C12 | 0.083 (2) | 0.149 (3) | 0.122 (3) | −0.020 (2) | 0.047 (2) | 0.012 (3) |
C13A | 0.086 (2) | 0.152 (3) | 0.125 (3) | −0.020 (2) | 0.046 (2) | 0.012 (2) |
C13B | 0.086 (2) | 0.152 (3) | 0.125 (3) | −0.020 (2) | 0.046 (2) | 0.012 (2) |
C14A | 0.086 (2) | 0.152 (3) | 0.125 (3) | −0.020 (2) | 0.046 (2) | 0.012 (2) |
C14B | 0.086 (2) | 0.152 (3) | 0.125 (3) | −0.020 (2) | 0.046 (2) | 0.012 (2) |
C15A | 0.086 (2) | 0.152 (3) | 0.125 (3) | −0.020 (2) | 0.046 (2) | 0.012 (2) |
C15B | 0.086 (2) | 0.152 (3) | 0.125 (3) | −0.020 (2) | 0.046 (2) | 0.012 (2) |
C16 | 0.0419 (17) | 0.0282 (15) | 0.0356 (16) | −0.0013 (12) | 0.0082 (12) | −0.0019 (12) |
C17 | 0.0418 (17) | 0.0315 (15) | 0.0338 (15) | 0.0041 (13) | 0.0041 (13) | 0.0003 (12) |
C18 | 0.056 (2) | 0.0330 (16) | 0.0403 (17) | −0.0023 (14) | 0.0091 (14) | −0.0102 (13) |
C19 | 0.0512 (19) | 0.0276 (15) | 0.0473 (18) | −0.0039 (13) | 0.0082 (14) | −0.0082 (13) |
C20 | 0.0535 (19) | 0.0327 (15) | 0.0403 (17) | −0.0048 (14) | 0.0145 (14) | 0.0030 (13) |
C21 | 0.0511 (19) | 0.0334 (16) | 0.0440 (17) | −0.0083 (14) | 0.0133 (15) | 0.0022 (13) |
C22 | 0.065 (2) | 0.060 (2) | 0.051 (2) | 0.0038 (18) | 0.0097 (17) | −0.0045 (17) |
C23 | 0.076 (3) | 0.062 (2) | 0.077 (3) | 0.010 (2) | 0.032 (2) | −0.005 (2) |
C24 | 0.053 (2) | 0.059 (2) | 0.090 (3) | −0.0041 (18) | 0.023 (2) | 0.000 (2) |
C25 | 0.055 (3) | 0.129 (4) | 0.100 (3) | −0.010 (3) | 0.001 (2) | −0.041 (3) |
C26 | 0.056 (3) | 0.105 (3) | 0.078 (3) | −0.008 (2) | 0.011 (2) | −0.042 (2) |
C27 | 0.0693 (10) | 0.1021 (11) | 0.1757 (12) | 0.0096 (10) | 0.0308 (11) | 0.0051 (11) |
C28A | 0.0702 (9) | 0.1029 (10) | 0.1765 (10) | 0.0100 (9) | 0.0305 (9) | 0.0050 (10) |
C28B | 0.0702 (9) | 0.1029 (10) | 0.1765 (10) | 0.0100 (9) | 0.0305 (9) | 0.0050 (10) |
C29A | 0.0702 (9) | 0.1029 (10) | 0.1765 (10) | 0.0100 (9) | 0.0305 (9) | 0.0050 (10) |
C29B | 0.0702 (9) | 0.1029 (10) | 0.1765 (10) | 0.0100 (9) | 0.0305 (9) | 0.0050 (10) |
C30A | 0.0702 (9) | 0.1029 (10) | 0.1765 (10) | 0.0100 (9) | 0.0305 (9) | 0.0050 (10) |
C30B | 0.0702 (9) | 0.1029 (10) | 0.1765 (10) | 0.0100 (9) | 0.0305 (9) | 0.0050 (10) |
O1—C1 | 1.211 (3) | C14B—H14E | 0.9600 |
O2—C2 | 1.210 (4) | C14B—H14F | 0.9600 |
O3—C17 | 1.231 (3) | C15A—H15A | 0.9600 |
O4—C16 | 1.229 (3) | C15A—H15B | 0.9600 |
N1—C1 | 1.370 (4) | C15A—H15C | 0.9600 |
N1—C2 | 1.378 (4) | C15B—H15D | 0.9600 |
N1—H1 | 0.8600 | C15B—H15E | 0.9600 |
N2—C4 | 1.365 (4) | C15B—H15F | 0.9600 |
N2—C1 | 1.382 (4) | C17—C18 | 1.430 (4) |
N2—C5 | 1.466 (4) | C18—C19 | 1.335 (4) |
N3—C16 | 1.366 (3) | C18—H18 | 0.9300 |
N3—C17 | 1.386 (3) | C19—H19 | 0.9300 |
N3—H3 | 0.8600 | C20—C21 | 1.503 (4) |
N4—C19 | 1.370 (3) | C20—H20A | 0.9700 |
N4—C16 | 1.373 (4) | C20—H20B | 0.9700 |
N4—C20 | 1.469 (3) | C21—C26 | 1.363 (5) |
C2—C3 | 1.440 (4) | C21—C22 | 1.369 (4) |
C3—C4 | 1.328 (4) | C22—C23 | 1.380 (5) |
C3—H3A | 0.9300 | C22—H22 | 0.9300 |
C4—H4 | 0.9300 | C23—C24 | 1.367 (6) |
C5—C6 | 1.503 (4) | C23—H23 | 0.9300 |
C5—H5A | 0.9700 | C24—C25 | 1.371 (5) |
C5—H5B | 0.9700 | C24—C27 | 1.519 (6) |
C6—C7 | 1.355 (5) | C25—C26 | 1.375 (6) |
C6—C11 | 1.366 (4) | C25—H25 | 0.9300 |
C7—C8 | 1.380 (5) | C26—H26 | 0.9300 |
C7—H7 | 0.9300 | C27—C29A | 1.523 (8) |
C8—C9 | 1.359 (5) | C27—C30A | 1.525 (7) |
C8—H8 | 0.9300 | C27—C28B | 1.529 (8) |
C9—C10 | 1.371 (5) | C27—C30B | 1.540 (8) |
C9—C12 | 1.522 (6) | C27—C29B | 1.543 (8) |
C10—C11 | 1.384 (5) | C27—C28A | 1.571 (8) |
C10—H10 | 0.9300 | C28A—H28A | 0.9600 |
C11—H11 | 0.9300 | C28A—H28B | 0.9600 |
C12—C14B | 1.508 (8) | C28A—H28C | 0.9600 |
C12—C15A | 1.519 (8) | C28B—H28D | 0.9600 |
C12—C15B | 1.524 (8) | C28B—H28E | 0.9600 |
C12—C13A | 1.527 (8) | C28B—H28F | 0.9600 |
C12—C14A | 1.545 (8) | C29A—H29A | 0.9600 |
C12—C13B | 1.554 (8) | C29A—H29B | 0.9600 |
C13A—H13A | 0.9600 | C29A—H29C | 0.9600 |
C13A—H13B | 0.9600 | C29B—H29D | 0.9600 |
C13A—H13C | 0.9600 | C29B—H29E | 0.9600 |
C13B—H13D | 0.9600 | C29B—H29F | 0.9600 |
C13B—H13E | 0.9600 | C30A—H30A | 0.9600 |
C13B—H13F | 0.9600 | C30A—H30B | 0.9600 |
C14A—H14A | 0.9600 | C30A—H30C | 0.9600 |
C14A—H14B | 0.9600 | C30B—H30D | 0.9600 |
C14A—H14C | 0.9600 | C30B—H30E | 0.9600 |
C14B—H14D | 0.9600 | C30B—H30F | 0.9600 |
C1—N1—C2 | 128.2 (3) | C12—C15B—H15E | 109.5 |
C1—N1—H1 | 115.9 | H15D—C15B—H15E | 109.5 |
C2—N1—H1 | 115.9 | C12—C15B—H15F | 109.5 |
C4—N2—C1 | 120.7 (2) | H15D—C15B—H15F | 109.5 |
C4—N2—C5 | 120.2 (3) | H15E—C15B—H15F | 109.5 |
C1—N2—C5 | 118.4 (3) | O4—C16—N3 | 122.2 (2) |
C16—N3—C17 | 126.9 (2) | O4—C16—N4 | 122.1 (2) |
C16—N3—H3 | 116.5 | N3—C16—N4 | 115.7 (2) |
C17—N3—H3 | 116.5 | O3—C17—N3 | 119.8 (2) |
C19—N4—C16 | 120.3 (2) | O3—C17—C18 | 126.2 (3) |
C19—N4—C20 | 121.6 (2) | N3—C17—C18 | 113.9 (2) |
C16—N4—C20 | 118.1 (2) | C19—C18—C17 | 119.8 (3) |
O1—C1—N1 | 122.1 (3) | C19—C18—H18 | 120.1 |
O1—C1—N2 | 123.3 (3) | C17—C18—H18 | 120.1 |
N1—C1—N2 | 114.6 (3) | C18—C19—N4 | 123.3 (3) |
O2—C2—N1 | 120.4 (3) | C18—C19—H19 | 118.4 |
O2—C2—C3 | 126.6 (3) | N4—C19—H19 | 118.4 |
N1—C2—C3 | 113.0 (3) | N4—C20—C21 | 112.1 (2) |
C4—C3—C2 | 120.2 (3) | N4—C20—H20A | 109.2 |
C4—C3—H3A | 119.9 | C21—C20—H20A | 109.2 |
C2—C3—H3A | 119.9 | N4—C20—H20B | 109.2 |
C3—C4—N2 | 123.3 (3) | C21—C20—H20B | 109.2 |
C3—C4—H4 | 118.4 | H20A—C20—H20B | 107.9 |
N2—C4—H4 | 118.4 | C26—C21—C22 | 116.7 (3) |
N2—C5—C6 | 115.1 (3) | C26—C21—C20 | 121.8 (3) |
N2—C5—H5A | 108.5 | C22—C21—C20 | 121.5 (3) |
C6—C5—H5A | 108.5 | C21—C22—C23 | 121.4 (4) |
N2—C5—H5B | 108.5 | C21—C22—H22 | 119.3 |
C6—C5—H5B | 108.5 | C23—C22—H22 | 119.3 |
H5A—C5—H5B | 107.5 | C24—C23—C22 | 122.4 (4) |
C7—C6—C11 | 117.1 (3) | C24—C23—H23 | 118.8 |
C7—C6—C5 | 123.1 (3) | C22—C23—H23 | 118.8 |
C11—C6—C5 | 119.7 (3) | C23—C24—C25 | 115.5 (4) |
C6—C7—C8 | 121.0 (4) | C23—C24—C27 | 121.9 (4) |
C6—C7—H7 | 119.5 | C25—C24—C27 | 122.5 (4) |
C8—C7—H7 | 119.5 | C24—C25—C26 | 122.4 (4) |
C9—C8—C7 | 123.0 (4) | C24—C25—H25 | 118.8 |
C9—C8—H8 | 118.5 | C26—C25—H25 | 118.8 |
C7—C8—H8 | 118.5 | C21—C26—C25 | 121.6 (4) |
C8—C9—C10 | 115.5 (4) | C21—C26—H26 | 119.2 |
C8—C9—C12 | 122.8 (4) | C25—C26—H26 | 119.2 |
C10—C9—C12 | 121.7 (4) | C24—C27—C29A | 112.6 (6) |
C9—C10—C11 | 122.0 (3) | C24—C27—C30A | 108.9 (5) |
C9—C10—H10 | 119.0 | C29A—C27—C30A | 112.2 (7) |
C11—C10—H10 | 119.0 | C24—C27—C28B | 115.6 (6) |
C6—C11—C10 | 121.3 (4) | C24—C27—C30B | 107.5 (5) |
C6—C11—H11 | 119.3 | C28B—C27—C30B | 109.1 (6) |
C10—C11—H11 | 119.3 | C24—C27—C29B | 110.3 (5) |
C14B—C12—C9 | 107.9 (5) | C28B—C27—C29B | 106.5 (6) |
C15A—C12—C9 | 111.0 (6) | C30B—C27—C29B | 107.7 (7) |
C14B—C12—C15B | 110.7 (6) | C24—C27—C28A | 107.3 (6) |
C9—C12—C15B | 109.9 (5) | C29A—C27—C28A | 108.5 (6) |
C9—C12—C13A | 113.7 (6) | C30A—C27—C28A | 107.1 (6) |
C15A—C12—C14A | 105.6 (6) | C27—C28A—H28A | 109.5 |
C9—C12—C14A | 112.5 (5) | C27—C28A—H28B | 109.5 |
C13A—C12—C14A | 105.0 (6) | C27—C28A—H28C | 109.5 |
C14B—C12—C13B | 109.0 (6) | C27—C28B—H28D | 109.5 |
C9—C12—C13B | 111.7 (5) | C27—C28B—H28E | 109.5 |
C15B—C12—C13B | 107.7 (6) | H28D—C28B—H28E | 109.5 |
C12—C13A—H13A | 109.5 | C27—C28B—H28F | 109.5 |
C12—C13A—H13B | 109.5 | H28D—C28B—H28F | 109.5 |
C12—C13A—H13C | 109.5 | H28E—C28B—H28F | 109.5 |
C12—C13B—H13D | 109.5 | C27—C29A—H29A | 109.5 |
C12—C13B—H13E | 109.5 | C27—C29A—H29B | 109.5 |
H13D—C13B—H13E | 109.5 | C27—C29A—H29C | 109.5 |
C12—C13B—H13F | 109.5 | C27—C29B—H29D | 109.5 |
H13D—C13B—H13F | 109.5 | C27—C29B—H29E | 109.5 |
H13E—C13B—H13F | 109.5 | H29D—C29B—H29E | 109.5 |
C12—C14A—H14A | 109.5 | C27—C29B—H29F | 109.5 |
C12—C14A—H14B | 109.5 | H29D—C29B—H29F | 109.5 |
C12—C14A—H14C | 109.5 | H29E—C29B—H29F | 109.5 |
C12—C14B—H14D | 109.5 | C27—C30A—H30A | 109.5 |
C12—C14B—H14E | 109.5 | C27—C30A—H30B | 109.5 |
H14D—C14B—H14E | 109.5 | C27—C30A—H30C | 109.5 |
C12—C14B—H14F | 109.5 | C27—C30B—H30D | 109.5 |
H14D—C14B—H14F | 109.5 | C27—C30B—H30E | 109.5 |
H14E—C14B—H14F | 109.5 | H30D—C30B—H30E | 109.5 |
C12—C15A—H15A | 109.5 | C27—C30B—H30F | 109.5 |
C12—C15A—H15B | 109.5 | H30D—C30B—H30F | 109.5 |
C12—C15A—H15C | 109.5 | H30E—C30B—H30F | 109.5 |
C12—C15B—H15D | 109.5 |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O3i | 0.86 | 2.06 | 2.915 (3) | 174 |
N3—H3···O4ii | 0.86 | 2.03 | 2.851 (3) | 160 |
Symmetry codes: (i) −x+1, −y+1, −z+2; (ii) −x+1, −y, −z+1. |
Experimental details
Crystal data | |
Chemical formula | C15H18N2O2 |
Mr | 258.31 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 294 |
a, b, c (Å) | 20.853 (7), 10.013 (4), 13.893 (5) |
β (°) | 94.915 (6) |
V (Å3) | 2890.2 (18) |
Z | 8 |
Radiation type | Mo Kα |
µ (mm−1) | 0.08 |
Crystal size (mm) | 0.40 × 0.28 × 0.20 |
Data collection | |
Diffractometer | Bruker SMART CCD area-detector |
Absorption correction | Multi-scan (SADABS; Bruker, 1999) |
Tmin, Tmax | 0.969, 0.984 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 14804, 5292, 2946 |
Rint | 0.042 |
(sin θ/λ)max (Å−1) | 0.602 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.063, 0.207, 1.02 |
No. of reflections | 5292 |
No. of parameters | 351 |
No. of restraints | 186 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.50, −0.31 |
Computer programs: SMART (Bruker, 1999), SAINT (Bruker, 1999), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O3i | 0.860 | 2.057 | 2.915 (3) | 174 |
N3—H3···O4ii | 0.860 | 2.028 | 2.851 (3) | 160 |
Symmetry codes: (i) −x+1, −y+1, −z+2; (ii) −x+1, −y, −z+1. |
Acknowledgements
This work was supported by the Natural Science Foundation of Henan Province China (grant No. 082300420110) and the Natural Science Foundation of Henan Province Eduation Department, China (grant No. 2007150036).
References
Bruker (1999). SMART, SAINT and SADABS. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Komori, T. & Sanemitsu, Y. (2002). US Patent No. 6 403 534. Google Scholar
Konz, M. J. (1997). US Patent No. 5 683 966. Google Scholar
Li, G.-C., Zhu, Y.-Q., Wang, Y.-F., Liu, W.-M., Song, H.-B. & Yang, H.-Z. (2005). Acta Cryst. E61, o4220–o4221. Web of Science CSD CrossRef IUCr Journals Google Scholar
Radatus, B. K. & Karimian, K. (1993). WO Patent No. 9 300 351. Google Scholar
Reinhard, R., Hamprecht, G., Puhl, M., Sagasser, I., Seitz, W., Zagar, C., Witschel, M. & Landes, A. (2004). WO Patent No. 2 004 007 467. Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Starrett, J. J. E., Mansuri, M. M., Martin, J. C., Fuller, C. E. & Howell, H. G. (1992). US Patent No. 5 130 421. Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Derivatives of pyrimidine-2,4(1H,3H)-dione are very important molecules in biology and have many application in the areas of herbicide (Konz, 1997; Reinhard et al., 2004; Komori and Sanemitsu 2002). Derivatives of pyrimidine-2,4(1H,3H)-dione have also been developed as antiviral agents, shch as AZT which is the most widely used anti-AIDS drug (Radatus & Karimian, 1993) and stavudine which is the most widely used anti-HIV drug (Starrett et al., 1992). In order to discover further biologically active pyrimidine compounds, the title compound, (I), was synthesized and its crystal structure determined (Fig. 1).
In the crystal structure of the title molecule, The asymmetric unit contains two independent molecules, with essentially identical geometries and conformations. The dihedral angles between the benzene rings and the pyrimidine rings in the two molecules are 89.96 (0.11) and 73.91 (0.11)°. The six methyl groups are disordered over two positions, with site-occupancies of 0.545 (4):0.455 (4) and 0.542 (7):0.458 (7) in the two molecules. The crystal structure is stabilized by N—H···O hydrogen bonds. For a crystal structure related to the title compound, see: Li et al. (2005).