organic compounds
3-Amino-1-(thiophen-2-yl)-9,10-dihydrophenanthrene-2,4-dicarbonitrile
aChemistry Department, Faculty of Science, King Abdulaziz University, PO Box 80203, Jeddah, Saudi Arabia, bThe Center of Excellence for Advanced Materials Research, King Abdulaziz University, Jeddah, PO Box 80203, Saudi Arabia, and cDepartment of Chemistry, University of Malaya, 50603 Kuala Lumpur, Malaysia
*Correspondence e-mail: edward.tiekink@gmail.com
In the title compound, C20H13N3S, the partially saturated ring adopts a twisted half-boat conformation with the methylene C atom closest to the aminobenzene ring lying 0.690 (6) Å out of the plane defined by the five remaining atoms. The dihydrophenanthrene residue has a folded conformation [dihedral angle between the outer benzene rings = 26.27 (18)°]. The thiophen-2-yl ring forms a dihedral angle of 63.76 (19)° with the benzene ring to which it is attached. In the crystal, inversion dimers linked by pairs of N—H⋯N hydrogen bonds generate R22(12) loops. The dimers are linked into layers in the bc plane by weak C—H⋯π interactions. The thiophen-2-yl ring is disordered over two essentially coplanar but opposite orientations in a 0.918 (4):0.082 (4) ratio.
Related literature
For background to the biological activity of related dicarbonitrile compounds, see: Aly et al. (1991); Rostom et al. (2011). For related structures, see: Asiri et al. (2011a,b).
Experimental
Crystal data
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Refinement
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Data collection: CrysAlis PRO (Agilent, 2011); cell CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997) and DIAMOND (Brandenburg, 2006); software used to prepare material for publication: publCIF (Westrip, 2010).
Supporting information
10.1107/S1600536812010033/hb6670sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536812010033/hb6670Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536812010033/hb6670Isup3.cml
A mixture of thiophene-2-cabaldehyde (1.1 g, 10 mmol), 1-tetralone (1.46 g, 10 mmol), malononitrile (0.66 g, 10 mmol) and ammonium acetate (6.2 g, 80 mmol) in absolute ethanol (50 ml) was refluxed for 6 h. The reaction mixture was allowed to cool, and the formed precipitate was filtered, washed with water, dried and recrystallized from ethanol as orange prisms. Yield: 69%. M.pt: 451–453 K.
Carbon-bound H-atoms were placed in calculated positions [C—H = 0.95 to 0.99 Å, Uiso(H) = 1.2Ueq(C)] and were included in the
in the riding model approximation.The amino H-atoms were located in a difference Fourier map, and were refined with a distance restraint of N—H = 0.88±0.01 Å; Uiso were refined.
The thienyl ring is disordered over two positions in a 0.918 (4): 0.082 (4) ratio. The S—C distances were restrained to 1.71±0.01 Å, the formal C—C single-bond distances to 1.42±0.01 Å and the formal C═C double-bond distances to 1.42±0.01 Å. Additionally, the 1,3-related distances were restrained to within 0.01 Å of each other. Because pairs of atoms are close to each other, the Uaniso of the C18' atom were equated to those of the S1 atom (as well as the C19'/C20, C20'/C19' and C18'/S1 pairs). The anisotropic displacement parameters were tightly restrained to be nearly isotropic.
The crystallographic investigation of the title compound, (I), was motivated by reports of the biological activity of related compounds (Aly et al., 1991; Rostom et al., 2011) and allied
investigations (Asiri et al., 2011a; Asiri et al., 2011b).In (I), Fig. 1, the partially saturated ring adopts a twisted half boat conformation with the C2 atom lying 0.690 (6) Å out of the plane defined by the five remaining atoms [r.m.s. deviation = 0.1032 Å; maximum deviations = 0.076 (3) Å for the C9 atom and -0.160 (3) Å for the C10 atom]. The dihedral angle between the adjacent benzene rings = 26.27 (18)° indicating a fold in the molecule. The thiophen-2-yl ring forms a dihedral angle of 63.76 (19)° with the benzene to which it is attached.
In the crystal packing, centrosymmetric aggregates are formed via N—H···N hydrogen bonds leading to 12-membered {···HNC3N}2 synthons, Table 1. These are linked into layers in the bc plane by C—H···π interactions, Fig. 2 and Table 1. These stack along the a axis with no specific interactions between them.
For background to the biological activity of related dicarbonitrile compounds, see: Aly et al. (1991); Rostom et al. (2011). For related structures, see: Asiri et al. (2011a,b).
Data collection: CrysAlis PRO (Agilent, 2011); cell
CrysAlis PRO (Agilent, 2011); data reduction: CrysAlis PRO (Agilent, 2011); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997) and DIAMOND (Brandenburg, 2006); software used to prepare material for publication: publCIF (Westrip, 2010).C20H13N3S | F(000) = 680 |
Mr = 327.39 | Dx = 1.374 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 1132 reflections |
a = 9.7882 (10) Å | θ = 2.7–25.0° |
b = 7.1199 (7) Å | µ = 0.21 mm−1 |
c = 22.746 (3) Å | T = 100 K |
β = 93.171 (11)° | Prism, orange |
V = 1582.8 (3) Å3 | 0.30 × 0.06 × 0.03 mm |
Z = 4 |
Agilent SuperNova Dual diffractometer with an Atlas detector | 2805 independent reflections |
Radiation source: SuperNova (Mo) X-ray Source | 1778 reflections with I > 2σ(I) |
Mirror monochromator | Rint = 0.056 |
Detector resolution: 10.4041 pixels mm-1 | θmax = 25.1°, θmin = 2.7° |
ω scan | h = −9→11 |
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011) | k = −8→6 |
Tmin = 0.940, Tmax = 0.994 | l = −19→27 |
5527 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.066 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.164 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.03 | w = 1/[σ2(Fo2) + (0.0559P)2 + 1.2744P] where P = (Fo2 + 2Fc2)/3 |
2805 reflections | (Δ/σ)max = 0.001 |
236 parameters | Δρmax = 0.67 e Å−3 |
56 restraints | Δρmin = −0.55 e Å−3 |
C20H13N3S | V = 1582.8 (3) Å3 |
Mr = 327.39 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 9.7882 (10) Å | µ = 0.21 mm−1 |
b = 7.1199 (7) Å | T = 100 K |
c = 22.746 (3) Å | 0.30 × 0.06 × 0.03 mm |
β = 93.171 (11)° |
Agilent SuperNova Dual diffractometer with an Atlas detector | 2805 independent reflections |
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011) | 1778 reflections with I > 2σ(I) |
Tmin = 0.940, Tmax = 0.994 | Rint = 0.056 |
5527 measured reflections |
R[F2 > 2σ(F2)] = 0.066 | 56 restraints |
wR(F2) = 0.164 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.03 | Δρmax = 0.67 e Å−3 |
2805 reflections | Δρmin = −0.55 e Å−3 |
236 parameters |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
S1 | 0.98458 (11) | 0.25812 (17) | 0.64193 (6) | 0.0331 (4) | 0.918 (4) |
S1' | 0.976 (2) | 0.275 (3) | 0.5229 (7) | 0.0358 (13) | 0.082 (4) |
N1 | 0.2456 (3) | 0.6816 (5) | 0.61810 (16) | 0.0329 (9) | |
N2 | 0.3958 (3) | 0.3401 (5) | 0.54813 (14) | 0.0213 (7) | |
H1 | 0.402 (4) | 0.236 (3) | 0.5276 (15) | 0.026* | |
H2 | 0.3108 (16) | 0.373 (5) | 0.5535 (17) | 0.026* | |
N3 | 0.6533 (3) | 0.0358 (5) | 0.51041 (15) | 0.0255 (8) | |
C1 | 0.7477 (4) | 0.6177 (5) | 0.61652 (16) | 0.0213 (9) | |
C2 | 0.8711 (4) | 0.7249 (5) | 0.64154 (18) | 0.0262 (9) | |
H2A | 0.8904 | 0.8322 | 0.6156 | 0.031* | |
H2B | 0.9523 | 0.6418 | 0.6438 | 0.031* | |
C3 | 0.8422 (4) | 0.7966 (6) | 0.70321 (18) | 0.0329 (11) | |
H3A | 0.8278 | 0.6888 | 0.7297 | 0.039* | |
H3B | 0.9215 | 0.8696 | 0.7196 | 0.039* | |
C4 | 0.7144 (4) | 0.9209 (5) | 0.69949 (19) | 0.0295 (10) | |
C5 | 0.7052 (5) | 1.0784 (6) | 0.73318 (19) | 0.0380 (11) | |
H5 | 0.7768 | 1.1082 | 0.7615 | 0.046* | |
C6 | 0.5919 (4) | 1.1956 (6) | 0.72634 (19) | 0.0329 (11) | |
H6 | 0.5848 | 1.3024 | 0.7510 | 0.040* | |
C7 | 0.4905 (4) | 1.1578 (5) | 0.68423 (18) | 0.0289 (10) | |
H7 | 0.4145 | 1.2402 | 0.6792 | 0.035* | |
C8 | 0.4980 (4) | 0.9990 (5) | 0.64865 (18) | 0.0260 (10) | |
H8 | 0.4288 | 0.9752 | 0.6187 | 0.031* | |
C9 | 0.6089 (4) | 0.8743 (5) | 0.65742 (16) | 0.0221 (9) | |
C10 | 0.6174 (4) | 0.6957 (5) | 0.62403 (16) | 0.0201 (9) | |
C11 | 0.5006 (3) | 0.5995 (5) | 0.60216 (16) | 0.0173 (8) | |
C12 | 0.5094 (4) | 0.4290 (5) | 0.57009 (16) | 0.0184 (8) | |
C13 | 0.6410 (3) | 0.3549 (5) | 0.56377 (16) | 0.0170 (8) | |
C14 | 0.7610 (3) | 0.4495 (5) | 0.58825 (16) | 0.0202 (9) | |
C15 | 0.3602 (4) | 0.6548 (5) | 0.61278 (17) | 0.0237 (9) | |
C16 | 0.6518 (3) | 0.1773 (5) | 0.53443 (16) | 0.0193 (9) | |
C17 | 0.8889 (3) | 0.3421 (4) | 0.58171 (17) | 0.0234 (9) | |
C18 | 0.9449 (5) | 0.2974 (7) | 0.5317 (2) | 0.0358 (13) | 0.918 (4) |
H18 | 0.9073 | 0.3340 | 0.4940 | 0.043* | 0.918 (4) |
C18' | 0.953 (2) | 0.282 (3) | 0.6333 (6) | 0.0331 (4) | 0.08 |
H18' | 0.9194 | 0.3055 | 0.6710 | 0.040* | 0.082 (4) |
C19 | 1.0686 (4) | 0.1878 (6) | 0.5402 (2) | 0.0325 (13) | 0.918 (4) |
H19 | 1.1203 | 0.1430 | 0.5089 | 0.039* | 0.918 (4) |
C19' | 1.0749 (19) | 0.179 (3) | 0.6240 (13) | 0.0361 (13) | 0.082 (4) |
H19' | 1.1321 | 0.1274 | 0.6549 | 0.043* | 0.082 (4) |
C20 | 1.1022 (4) | 0.1564 (6) | 0.5979 (2) | 0.0361 (13) | 0.918 (4) |
H20 | 1.1802 | 0.0875 | 0.6122 | 0.043* | 0.918 (4) |
C20' | 1.1006 (14) | 0.1645 (15) | 0.5660 (15) | 0.0325 (13) | 0.08 |
H20' | 1.1771 | 0.1011 | 0.5514 | 0.039* | 0.082 (4) |
U11 | U22 | U33 | U12 | U13 | U23 | |
S1 | 0.0230 (7) | 0.0336 (7) | 0.0420 (8) | 0.0037 (5) | −0.0030 (5) | 0.0073 (6) |
S1' | 0.021 (3) | 0.045 (3) | 0.043 (3) | 0.005 (2) | 0.015 (2) | −0.020 (2) |
N1 | 0.025 (2) | 0.035 (2) | 0.038 (2) | 0.0062 (16) | 0.0029 (17) | 0.0003 (17) |
N2 | 0.0165 (16) | 0.0228 (17) | 0.0244 (19) | −0.0001 (15) | −0.0003 (14) | −0.0056 (15) |
N3 | 0.0169 (17) | 0.0238 (19) | 0.036 (2) | 0.0003 (14) | 0.0039 (15) | −0.0071 (17) |
C1 | 0.022 (2) | 0.021 (2) | 0.021 (2) | −0.0035 (17) | 0.0023 (16) | 0.0002 (17) |
C2 | 0.024 (2) | 0.023 (2) | 0.032 (2) | −0.0028 (18) | 0.0044 (18) | −0.0083 (19) |
C3 | 0.032 (2) | 0.035 (2) | 0.031 (3) | −0.005 (2) | −0.0030 (19) | −0.010 (2) |
C4 | 0.034 (2) | 0.021 (2) | 0.032 (3) | −0.0097 (19) | −0.0055 (19) | 0.0035 (19) |
C5 | 0.047 (3) | 0.041 (3) | 0.026 (3) | −0.004 (2) | 0.012 (2) | −0.006 (2) |
C6 | 0.047 (3) | 0.027 (2) | 0.026 (2) | −0.002 (2) | 0.018 (2) | −0.007 (2) |
C7 | 0.040 (2) | 0.020 (2) | 0.029 (2) | 0.0020 (19) | 0.016 (2) | 0.0036 (19) |
C8 | 0.033 (2) | 0.022 (2) | 0.023 (2) | −0.0007 (19) | 0.0085 (18) | −0.0005 (18) |
C9 | 0.030 (2) | 0.0173 (19) | 0.020 (2) | −0.0026 (18) | 0.0090 (17) | 0.0006 (17) |
C10 | 0.023 (2) | 0.019 (2) | 0.018 (2) | −0.0003 (17) | 0.0038 (16) | 0.0037 (16) |
C11 | 0.0177 (19) | 0.0141 (18) | 0.021 (2) | 0.0009 (16) | 0.0038 (16) | 0.0016 (16) |
C12 | 0.021 (2) | 0.0190 (19) | 0.015 (2) | 0.0010 (17) | 0.0041 (16) | 0.0029 (16) |
C13 | 0.0161 (19) | 0.0154 (18) | 0.020 (2) | 0.0000 (16) | 0.0063 (15) | 0.0004 (16) |
C14 | 0.020 (2) | 0.020 (2) | 0.021 (2) | −0.0004 (16) | 0.0051 (16) | 0.0016 (17) |
C15 | 0.032 (2) | 0.018 (2) | 0.020 (2) | −0.0007 (18) | −0.0020 (18) | −0.0004 (17) |
C16 | 0.0144 (19) | 0.022 (2) | 0.021 (2) | −0.0030 (16) | 0.0006 (16) | 0.0018 (18) |
C17 | 0.0176 (19) | 0.023 (2) | 0.030 (2) | −0.0044 (17) | 0.0021 (17) | −0.0049 (18) |
C18 | 0.021 (3) | 0.045 (3) | 0.043 (3) | 0.005 (2) | 0.015 (2) | −0.020 (2) |
C18' | 0.0230 (7) | 0.0336 (7) | 0.0420 (8) | 0.0037 (5) | −0.0030 (5) | 0.0073 (6) |
C19 | 0.011 (2) | 0.033 (2) | 0.053 (3) | 0.0018 (19) | 0.000 (2) | −0.021 (2) |
C19' | 0.018 (2) | 0.027 (2) | 0.064 (4) | 0.0064 (19) | 0.004 (2) | −0.008 (3) |
C20 | 0.018 (2) | 0.027 (2) | 0.064 (4) | 0.0064 (19) | 0.004 (2) | −0.008 (3) |
C20' | 0.011 (2) | 0.033 (2) | 0.053 (3) | 0.0018 (19) | 0.000 (2) | −0.021 (2) |
S1—C17 | 1.723 (4) | C7—C8 | 1.395 (5) |
S1—C20 | 1.727 (5) | C7—H7 | 0.9500 |
S1'—C17 | 1.695 (9) | C8—C9 | 1.408 (5) |
S1'—C20' | 1.713 (10) | C8—H8 | 0.9500 |
N1—C15 | 1.150 (5) | C9—C10 | 1.486 (5) |
N2—C12 | 1.351 (5) | C10—C11 | 1.400 (5) |
N2—H1 | 0.882 (10) | C11—C12 | 1.422 (5) |
N2—H2 | 0.880 (10) | C11—C15 | 1.462 (5) |
N3—C16 | 1.146 (5) | C12—C13 | 1.407 (5) |
C1—C14 | 1.369 (5) | C13—C16 | 1.437 (5) |
C1—C10 | 1.410 (5) | C13—C14 | 1.439 (5) |
C1—C2 | 1.513 (5) | C14—C17 | 1.481 (5) |
C2—C3 | 1.534 (5) | C17—C18 | 1.329 (6) |
C2—H2A | 0.9900 | C17—C18' | 1.367 (9) |
C2—H2B | 0.9900 | C18—C19 | 1.445 (6) |
C3—C4 | 1.531 (6) | C18—H18 | 0.9500 |
C3—H3A | 0.9900 | C18'—C19' | 1.427 (9) |
C3—H3B | 0.9900 | C18'—H18' | 0.9500 |
C4—C5 | 1.364 (6) | C19—C20 | 1.354 (6) |
C4—C9 | 1.408 (5) | C19—H19 | 0.9500 |
C5—C6 | 1.390 (6) | C19'—C20' | 1.360 (9) |
C5—H5 | 0.9500 | C19'—H19' | 0.9500 |
C6—C7 | 1.367 (6) | C20—H20 | 0.9500 |
C6—H6 | 0.9500 | C20'—H20' | 0.9500 |
C17—S1—C20 | 92.0 (2) | C1—C10—C9 | 118.4 (3) |
C17—S1'—C20' | 93.0 (5) | C10—C11—C12 | 121.9 (3) |
C12—N2—H1 | 121 (2) | C10—C11—C15 | 124.5 (3) |
C12—N2—H2 | 126 (3) | C12—C11—C15 | 113.5 (3) |
H1—N2—H2 | 113 (4) | N2—C12—C13 | 121.8 (3) |
C14—C1—C10 | 120.8 (3) | N2—C12—C11 | 121.2 (3) |
C14—C1—C2 | 121.6 (3) | C13—C12—C11 | 117.0 (3) |
C10—C1—C2 | 117.7 (3) | C12—C13—C16 | 117.9 (3) |
C1—C2—C3 | 109.1 (3) | C12—C13—C14 | 121.2 (3) |
C1—C2—H2A | 109.9 | C16—C13—C14 | 120.9 (3) |
C3—C2—H2A | 109.9 | C1—C14—C13 | 119.6 (3) |
C1—C2—H2B | 109.9 | C1—C14—C17 | 127.0 (3) |
C3—C2—H2B | 109.9 | C13—C14—C17 | 113.3 (3) |
H2A—C2—H2B | 108.3 | N1—C15—C11 | 172.9 (4) |
C4—C3—C2 | 109.5 (3) | N3—C16—C13 | 176.6 (4) |
C4—C3—H3A | 109.8 | C18—C17—C14 | 126.9 (4) |
C2—C3—H3A | 109.8 | C18'—C17—C14 | 115.1 (11) |
C4—C3—H3B | 109.8 | C18'—C17—S1' | 111.3 (7) |
C2—C3—H3B | 109.8 | C14—C17—S1' | 133.6 (8) |
H3A—C3—H3B | 108.2 | C18—C17—S1 | 111.5 (3) |
C5—C4—C9 | 120.4 (4) | C14—C17—S1 | 121.6 (3) |
C5—C4—C3 | 121.6 (4) | C17—C18—C19 | 113.4 (4) |
C9—C4—C3 | 117.9 (4) | C17—C18—H18 | 123.3 |
C4—C5—C6 | 120.5 (4) | C19—C18—H18 | 123.3 |
C4—C5—H5 | 119.7 | C17—C18'—C19' | 112.4 (6) |
C6—C5—H5 | 119.7 | C17—C18'—H18' | 123.8 |
C7—C6—C5 | 120.2 (4) | C19'—C18'—H18' | 123.8 |
C7—C6—H6 | 119.9 | C20—C19—C18 | 112.1 (4) |
C5—C6—H6 | 119.9 | C20—C19—H19 | 124.0 |
C6—C7—C8 | 120.5 (4) | C18—C19—H19 | 124.0 |
C6—C7—H7 | 119.8 | C20'—C19'—C18' | 112.7 (7) |
C8—C7—H7 | 119.8 | C20'—C19'—H19' | 123.7 |
C7—C8—C9 | 119.6 (4) | C18'—C19'—H19' | 123.7 |
C7—C8—H8 | 120.2 | C19—C20—S1 | 111.1 (3) |
C9—C8—H8 | 120.2 | C19—C20—H20 | 124.5 |
C8—C9—C4 | 118.6 (4) | S1—C20—H20 | 124.5 |
C8—C9—C10 | 122.1 (3) | C19'—C20'—S1' | 110.8 (8) |
C4—C9—C10 | 119.3 (3) | C19'—C20'—H20' | 124.6 |
C11—C10—C1 | 119.4 (3) | S1'—C20'—H20' | 124.6 |
C11—C10—C9 | 122.2 (3) | ||
C14—C1—C2—C3 | −135.7 (4) | C2—C1—C14—C13 | −178.3 (3) |
C10—C1—C2—C3 | 43.4 (5) | C10—C1—C14—C17 | −174.1 (3) |
C1—C2—C3—C4 | −58.1 (4) | C2—C1—C14—C17 | 5.0 (6) |
C2—C3—C4—C5 | −142.1 (4) | C12—C13—C14—C1 | −2.2 (5) |
C2—C3—C4—C9 | 34.1 (5) | C16—C13—C14—C1 | −179.3 (3) |
C9—C4—C5—C6 | −0.3 (6) | C12—C13—C14—C17 | 174.9 (3) |
C3—C4—C5—C6 | 175.8 (4) | C16—C13—C14—C17 | −2.2 (5) |
C4—C5—C6—C7 | −2.3 (6) | C1—C14—C17—C18 | −118.5 (4) |
C5—C6—C7—C8 | 1.5 (6) | C13—C14—C17—C18 | 64.6 (3) |
C6—C7—C8—C9 | 1.8 (6) | C1—C14—C17—C18' | 62.6 (12) |
C7—C8—C9—C4 | −4.3 (5) | C13—C14—C17—C18' | −114.3 (11) |
C7—C8—C9—C10 | 175.3 (3) | C1—C14—C17—S1' | −117.4 (11) |
C5—C4—C9—C8 | 3.6 (6) | C13—C14—C17—S1' | 65.7 (11) |
C3—C4—C9—C8 | −172.7 (4) | C1—C14—C17—S1 | 61.6 (4) |
C5—C4—C9—C10 | −176.1 (4) | C13—C14—C17—S1 | −115.3 (3) |
C3—C4—C9—C10 | 7.6 (5) | C20'—S1'—C17—C18 | −173 (8) |
C14—C1—C10—C11 | −0.1 (5) | C20'—S1'—C17—C18' | 0.1 (3) |
C2—C1—C10—C11 | −179.2 (3) | C20'—S1'—C17—C14 | −179.92 (19) |
C14—C1—C10—C9 | 177.3 (3) | C20'—S1'—C17—S1 | 1.0 (10) |
C2—C1—C10—C9 | −1.8 (5) | C20—S1—C17—C18 | −0.9 (2) |
C8—C9—C10—C11 | −28.0 (6) | C20—S1—C17—C18' | 171 (9) |
C4—C9—C10—C11 | 151.7 (4) | C20—S1—C17—C14 | 178.99 (15) |
C8—C9—C10—C1 | 154.7 (4) | C20—S1—C17—S1' | −1.8 (8) |
C4—C9—C10—C1 | −25.6 (5) | C18'—C17—C18—C19 | 0.2 (14) |
C1—C10—C11—C12 | −3.0 (5) | C14—C17—C18—C19 | −178.7 (2) |
C9—C10—C11—C12 | 179.8 (3) | S1'—C17—C18—C19 | 8 (7) |
C1—C10—C11—C15 | 172.9 (3) | S1—C17—C18—C19 | 1.2 (3) |
C9—C10—C11—C15 | −4.3 (6) | C18—C17—C18'—C19' | 1.0 (12) |
C10—C11—C12—N2 | −178.5 (3) | C14—C17—C18'—C19' | 180.0 (3) |
C15—C11—C12—N2 | 5.2 (5) | S1'—C17—C18'—C19' | 0.0 (3) |
C10—C11—C12—C13 | 3.3 (5) | S1—C17—C18'—C19' | −8 (9) |
C15—C11—C12—C13 | −173.0 (3) | C17—C18—C19—C20 | −1.0 (4) |
N2—C12—C13—C16 | −1.7 (5) | C17—C18'—C19'—C20' | −0.1 (5) |
C11—C12—C13—C16 | 176.5 (3) | C18—C19—C20—S1 | 0.2 (4) |
N2—C12—C13—C14 | −178.9 (3) | C17—S1—C20—C19 | 0.4 (3) |
C11—C12—C13—C14 | −0.7 (5) | C18'—C19'—C20'—S1' | 0.1 (6) |
C10—C1—C14—C13 | 2.6 (6) | C17—S1'—C20'—C19' | −0.1 (5) |
Cg1 is the centroid of the C4–C9 ring. |
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H1···N3i | 0.88 (3) | 2.18 (3) | 3.016 (5) | 160 (3) |
C6—H6···Cg1ii | 0.95 | 2.85 | 3.660 (5) | 144 |
Symmetry codes: (i) −x+1, −y, −z+1; (ii) −x+1, y+1/2, −z+3/2. |
Experimental details
Crystal data | |
Chemical formula | C20H13N3S |
Mr | 327.39 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 100 |
a, b, c (Å) | 9.7882 (10), 7.1199 (7), 22.746 (3) |
β (°) | 93.171 (11) |
V (Å3) | 1582.8 (3) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.21 |
Crystal size (mm) | 0.30 × 0.06 × 0.03 |
Data collection | |
Diffractometer | Agilent SuperNova Dual diffractometer with an Atlas detector |
Absorption correction | Multi-scan (CrysAlis PRO; Agilent, 2011) |
Tmin, Tmax | 0.940, 0.994 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 5527, 2805, 1778 |
Rint | 0.056 |
(sin θ/λ)max (Å−1) | 0.596 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.066, 0.164, 1.03 |
No. of reflections | 2805 |
No. of parameters | 236 |
No. of restraints | 56 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.67, −0.55 |
Computer programs: CrysAlis PRO (Agilent, 2011), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 (Farrugia, 1997) and DIAMOND (Brandenburg, 2006), publCIF (Westrip, 2010).
Cg1 is the centroid of the C4–C9 ring. |
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H1···N3i | 0.88 (3) | 2.18 (3) | 3.016 (5) | 160 (3) |
C6—H6···Cg1ii | 0.95 | 2.85 | 3.660 (5) | 144 |
Symmetry codes: (i) −x+1, −y, −z+1; (ii) −x+1, y+1/2, −z+3/2. |
Footnotes
‡Additional correspondence author, e-mail: aasiri2@kau.edu.sa.
Acknowledgements
The authors are grateful to the Center of Excellence for Advanced Materials Research and the Chemistry Department at King Abdulaziz University for providing the research facilities. We also thank the Ministry of Higher Education (Malaysia) for funding structural studies through the High-Impact Research scheme (UM.C/HIR/MOHE/SC/12).
References
Agilent (2011). CrysAlis PRO. Agilent Technologies, Yarnton, England. Google Scholar
Aly, A. S., El-Ezabawy, S. R. & Abdel-Fattah, A. M. (1991). Egypt. J. Pharm. Sci. 32, 827–834. CAS Google Scholar
Asiri, A. M., Al-Youbi, A. O., Faidallah, H. M., Ng, S. W. & Tiekink, E. R. T. (2011a). Acta Cryst. E67, o2438. Web of Science CSD CrossRef IUCr Journals Google Scholar
Asiri, A. M., Al-Youbi, A. O., Faidallah, H. M., Ng, S. W. & Tiekink, E. R. T. (2011b). Acta Cryst. E67, o2449. Web of Science CSD CrossRef IUCr Journals Google Scholar
Brandenburg, K. (2006). DIAMOND. Crystal Impact GbR, Bonn, Germany. Google Scholar
Farrugia, L. J. (1997). J. Appl. Cryst. 30, 565. CrossRef IUCr Journals Google Scholar
Rostom, S. A. F., Faidallah, S. M. & Al Saadi, M. S. (2011). Med. Chem. Res. 20, 1260–1272. Web of Science CrossRef CAS Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Westrip, S. P. (2010). J. Appl. Cryst. 43, 920–925. Web of Science CrossRef CAS IUCr Journals Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
The crystallographic investigation of the title compound, (I), was motivated by reports of the biological activity of related compounds (Aly et al., 1991; Rostom et al., 2011) and allied crystal structure investigations (Asiri et al., 2011a; Asiri et al., 2011b).
In (I), Fig. 1, the partially saturated ring adopts a twisted half boat conformation with the C2 atom lying 0.690 (6) Å out of the plane defined by the five remaining atoms [r.m.s. deviation = 0.1032 Å; maximum deviations = 0.076 (3) Å for the C9 atom and -0.160 (3) Å for the C10 atom]. The dihedral angle between the adjacent benzene rings = 26.27 (18)° indicating a fold in the molecule. The thiophen-2-yl ring forms a dihedral angle of 63.76 (19)° with the benzene to which it is attached.
In the crystal packing, centrosymmetric aggregates are formed via N—H···N hydrogen bonds leading to 12-membered {···HNC3N}2 synthons, Table 1. These are linked into layers in the bc plane by C—H···π interactions, Fig. 2 and Table 1. These stack along the a axis with no specific interactions between them.