organic compounds
7′-Phenyl-1′,3′,5′,6′,7′,7a'-hexahydrodipiro[acenaphthylene-1,5′-pyrrolo[1,2-c]thiazole-6′,2′′-indane]-2,1′′(1H)-dione
aInstitute for Research in Molecular Medicine, Universiti Sains Malaysia, Minden 11800, Penang, Malaysia, and bSchool of Physics, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia
*Correspondence e-mail: arazaki@usm.my
In the title compound, C31H23NO2S, the pyrrolidine ring adopts an (with the spiro C atom as the flap), while the thiazolidine ring and the two cyclopentane rings adopt twisted conformations. The mean plane through the hexahydropyrrolo[1,2-c]thiazole ring [r.m.s deviation = 0.400 (1) Å] forms dihedral angles of 76.83 (4), 80.70 (5) and 79.00 (4)° with the benzene ring and the mean planes of the dihydroacenaphthylene and the dihydroindene rings, respectively. In the crystal, molecules are linked by C—H⋯O hydrogen bonds into sheets lying parallel to the bc plane. One of the ketone O atoms accepts three such bonds. Weak C—H⋯π interactions are also observed.
Related literature
For related structures, see: Wei et al. (2011a,b, 2012). For ring conformations, see: Cremer & Pople (1975). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2009); cell SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009).
Supporting information
10.1107/S1600536812013293/hb6700sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536812013293/hb6700Isup2.hkl
A mixture of (E)-(2-benzylidene)-2,3-dihydro-1H-indene-1-one (0.001 mol), acenaphthenequinone (0.001 mol) and thiazolidine-4-carboxylic acid (0.002 mol) (1:1:2) were dissolved in methanol (10 ml) and refluxed for 4 h. After completion of the reaction as evident from TLC, the excess solvent was evaporated slowly and the product was separated and recrystallized from methanol to reveal the title compound as yellow crystals.
All H atoms were positioned geometrically (C–H = 0.95 and 1.00 Å) and refined using a riding model with Uiso(H) = 1.2 Ueq(C).
As part of our ongoing search to prepare
with potential antitubercular activity (Wei et al., 2011a,b), we have synthesized the title compound as described below.In the molecular structure (Fig 1), the pyrrolidine ring (N1/C12/C13/C22/C23) is in φ= 68.75 (14)° with atom C13 at the flap]. Meanwhile, the thiazolidine ring and the two cyclopentane rings (S1/N1/C23–C25, C1/C2/C10–C12 & C13–C15/C20/C21) are twisted about C25–S1 bond [puckering parameters, Q= 0.3450 (11) Å and φ= 339.37 (19)°], C12–C1 bond [puckering parameters, Q= 0.1209 (11) Å and φ= 167.0 (5)°] and C13–S14 bond [puckering parameters, Q= 0.2875 (11) Å and φ= 190.5 (2)°], respectively, adopting half-chair conformation. In addition, the dihedral angles between the mean plane through the hexahydropyrrolo [1,2-c]thiazole ring (S1/N1/C12/C13/C22–C25) [r.m.s deviation of 0.400 (1) Å] with the benzene ring (C26–C31) and the mean planes of the dihydroacenaphthylene and the dihydro-indene rings (C1–C10/C12 & C13–C21) are 76.83 (4), 80.70 (5) and 79.00 (4)°, respectively. The bond lengths and angles are within normal ranges and comparable to the related structure (Wei, et al., 2011b; Wei, et al., 2012).
(Cremer & Pople, 1975) [puckering parameters, Q= 0.4480 (11) Å andThe crystal packing is shown in Fig. 2. The molecules are linked into sheets lying parallel to bc-plane via C7—H7A···O2, C4—H4A···O1, C23—H23A···O1 and C31—H31A···O1 (Table 1) hydrogen bonds. The
also features C18—H18A···Cg1 and C25—H25A···Cg2 (Table 1) interactions (Cg1 and Cg2 are the centroids of the C2–C6/C11 and C15–C20 rings, respectively).For related structures, see: Wei et al. (2011a,b, 2012). For ring conformations, see: Cremer & Pople (1975). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986).
Data collection: APEX2 (Bruker, 2009); cell
SAINT (Bruker, 2009); data reduction: SAINT (Bruker, 2009); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).Fig. 1. The molecular structure of the title compound, showing 30% probability displacement ellipsoids. | |
Fig. 2. The crystal packing of the title compound. The H atoms not involved in the intermolecular interactions (dashed lines) have been omitted for clarity. |
C31H23NO2S | F(000) = 992 |
Mr = 473.56 | Dx = 1.400 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 9949 reflections |
a = 8.4054 (1) Å | θ = 2.5–35.2° |
b = 11.3716 (1) Å | µ = 0.18 mm−1 |
c = 23.5194 (2) Å | T = 100 K |
β = 92.259 (1)° | Block, yellow |
V = 2246.30 (4) Å3 | 0.30 × 0.18 × 0.16 mm |
Z = 4 |
Bruker SMART APEXII CCD diffractometer | 10047 independent reflections |
Radiation source: fine-focus sealed tube | 7694 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.039 |
φ and ω scans | θmax = 35.3°, θmin = 2.0° |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | h = −13→13 |
Tmin = 0.949, Tmax = 0.972 | k = −18→14 |
39597 measured reflections | l = −38→28 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.051 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.124 | H-atom parameters constrained |
S = 1.03 | w = 1/[σ2(Fo2) + (0.0523P)2 + 0.9508P] where P = (Fo2 + 2Fc2)/3 |
10047 reflections | (Δ/σ)max = 0.001 |
316 parameters | Δρmax = 0.58 e Å−3 |
0 restraints | Δρmin = −0.29 e Å−3 |
C31H23NO2S | V = 2246.30 (4) Å3 |
Mr = 473.56 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 8.4054 (1) Å | µ = 0.18 mm−1 |
b = 11.3716 (1) Å | T = 100 K |
c = 23.5194 (2) Å | 0.30 × 0.18 × 0.16 mm |
β = 92.259 (1)° |
Bruker SMART APEXII CCD diffractometer | 10047 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | 7694 reflections with I > 2σ(I) |
Tmin = 0.949, Tmax = 0.972 | Rint = 0.039 |
39597 measured reflections |
R[F2 > 2σ(F2)] = 0.051 | 0 restraints |
wR(F2) = 0.124 | H-atom parameters constrained |
S = 1.03 | Δρmax = 0.58 e Å−3 |
10047 reflections | Δρmin = −0.29 e Å−3 |
316 parameters |
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
S1 | 0.86000 (4) | 0.42837 (3) | 0.121701 (14) | 0.01913 (7) | |
O1 | 0.48435 (10) | 0.17004 (8) | 0.24386 (3) | 0.01480 (15) | |
O2 | 0.24182 (10) | 0.24847 (8) | 0.04159 (3) | 0.01487 (16) | |
N1 | 0.60468 (11) | 0.35224 (8) | 0.17368 (4) | 0.01107 (16) | |
C1 | 0.49807 (12) | 0.15401 (9) | 0.19309 (4) | 0.01060 (17) | |
C2 | 0.51959 (12) | 0.04064 (9) | 0.16415 (4) | 0.01095 (18) | |
C3 | 0.50561 (13) | −0.07416 (10) | 0.18207 (5) | 0.01361 (19) | |
H3A | 0.4668 | −0.0923 | 0.2184 | 0.016* | |
C4 | 0.55106 (14) | −0.16396 (10) | 0.14435 (5) | 0.0159 (2) | |
H4A | 0.5401 | −0.2437 | 0.1556 | 0.019* | |
C5 | 0.61100 (14) | −0.13945 (10) | 0.09164 (5) | 0.0153 (2) | |
H5A | 0.6423 | −0.2022 | 0.0679 | 0.018* | |
C6 | 0.62624 (13) | −0.02169 (10) | 0.07274 (5) | 0.01244 (18) | |
C7 | 0.68707 (13) | 0.01653 (10) | 0.02044 (5) | 0.0147 (2) | |
H7A | 0.7235 | −0.0392 | −0.0062 | 0.018* | |
C8 | 0.69293 (14) | 0.13492 (10) | 0.00849 (5) | 0.0147 (2) | |
H8A | 0.7345 | 0.1592 | −0.0266 | 0.018* | |
C9 | 0.63933 (13) | 0.22232 (10) | 0.04655 (5) | 0.01278 (18) | |
H9A | 0.6441 | 0.3032 | 0.0367 | 0.015* | |
C10 | 0.58047 (12) | 0.18838 (9) | 0.09778 (4) | 0.01008 (17) | |
C11 | 0.57568 (12) | 0.06664 (9) | 0.10990 (4) | 0.01046 (17) | |
C12 | 0.51304 (12) | 0.25553 (9) | 0.14809 (4) | 0.00966 (17) | |
C13 | 0.34938 (12) | 0.32033 (9) | 0.13396 (4) | 0.00936 (17) | |
C14 | 0.25058 (12) | 0.32869 (10) | 0.18797 (4) | 0.01128 (18) | |
H14A | 0.3205 | 0.3309 | 0.2228 | 0.014* | |
H14B | 0.1818 | 0.3994 | 0.1869 | 0.014* | |
C15 | 0.15252 (12) | 0.21773 (10) | 0.18530 (5) | 0.01242 (18) | |
C16 | 0.07876 (14) | 0.15873 (11) | 0.22895 (5) | 0.0173 (2) | |
H16A | 0.0894 | 0.1859 | 0.2671 | 0.021* | |
C17 | −0.01086 (15) | 0.05901 (12) | 0.21539 (6) | 0.0217 (2) | |
H17A | −0.0608 | 0.0174 | 0.2448 | 0.026* | |
C18 | −0.02897 (15) | 0.01885 (12) | 0.15930 (6) | 0.0221 (2) | |
H18A | −0.0930 | −0.0483 | 0.1510 | 0.027* | |
C19 | 0.04614 (14) | 0.07663 (11) | 0.11552 (6) | 0.0176 (2) | |
H19A | 0.0346 | 0.0501 | 0.0773 | 0.021* | |
C20 | 0.13885 (13) | 0.17474 (10) | 0.12972 (5) | 0.01284 (18) | |
C21 | 0.24112 (12) | 0.24687 (9) | 0.09327 (4) | 0.01074 (17) | |
C22 | 0.40993 (12) | 0.43806 (9) | 0.10995 (4) | 0.01032 (17) | |
H22A | 0.4528 | 0.4210 | 0.0717 | 0.012* | |
C23 | 0.55326 (12) | 0.46704 (10) | 0.15034 (5) | 0.01232 (18) | |
H23A | 0.5157 | 0.5170 | 0.1821 | 0.015* | |
C24 | 0.69479 (14) | 0.52975 (11) | 0.12283 (6) | 0.0225 (3) | |
H24A | 0.7256 | 0.6006 | 0.1451 | 0.027* | |
H24B | 0.6638 | 0.5545 | 0.0836 | 0.027* | |
C25 | 0.77507 (13) | 0.34147 (11) | 0.17878 (5) | 0.0159 (2) | |
H25A | 0.8066 | 0.2580 | 0.1753 | 0.019* | |
H25B | 0.8146 | 0.3710 | 0.2163 | 0.019* | |
C26 | 0.28586 (12) | 0.53385 (9) | 0.10170 (4) | 0.01095 (17) | |
C27 | 0.20247 (13) | 0.54334 (10) | 0.04912 (5) | 0.01402 (19) | |
H27A | 0.2268 | 0.4909 | 0.0192 | 0.017* | |
C28 | 0.08491 (14) | 0.62787 (11) | 0.03980 (5) | 0.0170 (2) | |
H28A | 0.0287 | 0.6319 | 0.0040 | 0.020* | |
C29 | 0.04933 (14) | 0.70648 (11) | 0.08275 (5) | 0.0176 (2) | |
H29A | −0.0311 | 0.7643 | 0.0765 | 0.021* | |
C30 | 0.13264 (14) | 0.69968 (10) | 0.13495 (5) | 0.0163 (2) | |
H30A | 0.1102 | 0.7540 | 0.1642 | 0.020* | |
C31 | 0.24880 (13) | 0.61373 (10) | 0.14462 (5) | 0.01328 (19) | |
H31A | 0.3035 | 0.6092 | 0.1807 | 0.016* |
U11 | U22 | U33 | U12 | U13 | U23 | |
S1 | 0.01378 (12) | 0.01626 (14) | 0.02775 (15) | −0.00203 (10) | 0.00564 (10) | 0.00049 (11) |
O1 | 0.0201 (4) | 0.0142 (4) | 0.0101 (3) | 0.0016 (3) | 0.0005 (3) | 0.0002 (3) |
O2 | 0.0185 (4) | 0.0146 (4) | 0.0114 (3) | −0.0002 (3) | −0.0016 (3) | −0.0021 (3) |
N1 | 0.0106 (4) | 0.0089 (4) | 0.0135 (4) | −0.0008 (3) | −0.0017 (3) | −0.0008 (3) |
C1 | 0.0104 (4) | 0.0104 (4) | 0.0110 (4) | 0.0011 (3) | −0.0002 (3) | 0.0010 (3) |
C2 | 0.0123 (4) | 0.0094 (4) | 0.0111 (4) | 0.0004 (3) | −0.0002 (3) | 0.0004 (3) |
C3 | 0.0159 (4) | 0.0113 (5) | 0.0136 (4) | −0.0005 (4) | 0.0000 (3) | 0.0014 (4) |
C4 | 0.0202 (5) | 0.0095 (5) | 0.0180 (5) | −0.0007 (4) | 0.0002 (4) | 0.0012 (4) |
C5 | 0.0185 (5) | 0.0104 (5) | 0.0169 (5) | 0.0005 (4) | 0.0000 (4) | −0.0019 (4) |
C6 | 0.0142 (4) | 0.0098 (4) | 0.0133 (4) | 0.0003 (4) | 0.0004 (3) | −0.0017 (3) |
C7 | 0.0168 (5) | 0.0139 (5) | 0.0138 (4) | −0.0009 (4) | 0.0031 (4) | −0.0041 (4) |
C8 | 0.0170 (5) | 0.0149 (5) | 0.0123 (4) | −0.0019 (4) | 0.0041 (4) | −0.0016 (4) |
C9 | 0.0154 (4) | 0.0109 (4) | 0.0123 (4) | −0.0006 (4) | 0.0031 (3) | −0.0001 (3) |
C10 | 0.0106 (4) | 0.0090 (4) | 0.0107 (4) | 0.0006 (3) | 0.0009 (3) | −0.0001 (3) |
C11 | 0.0112 (4) | 0.0087 (4) | 0.0114 (4) | 0.0000 (3) | 0.0004 (3) | −0.0001 (3) |
C12 | 0.0109 (4) | 0.0084 (4) | 0.0097 (4) | −0.0002 (3) | 0.0004 (3) | −0.0001 (3) |
C13 | 0.0098 (4) | 0.0088 (4) | 0.0095 (4) | −0.0005 (3) | 0.0000 (3) | −0.0009 (3) |
C14 | 0.0118 (4) | 0.0108 (4) | 0.0113 (4) | 0.0008 (3) | 0.0020 (3) | −0.0005 (3) |
C15 | 0.0099 (4) | 0.0128 (5) | 0.0146 (4) | 0.0021 (4) | 0.0015 (3) | 0.0024 (4) |
C16 | 0.0146 (5) | 0.0194 (6) | 0.0183 (5) | 0.0016 (4) | 0.0043 (4) | 0.0062 (4) |
C17 | 0.0147 (5) | 0.0195 (6) | 0.0310 (6) | −0.0005 (4) | 0.0044 (4) | 0.0122 (5) |
C18 | 0.0149 (5) | 0.0151 (5) | 0.0362 (7) | −0.0035 (4) | −0.0012 (5) | 0.0064 (5) |
C19 | 0.0148 (5) | 0.0127 (5) | 0.0251 (6) | −0.0027 (4) | −0.0031 (4) | 0.0012 (4) |
C20 | 0.0116 (4) | 0.0112 (5) | 0.0156 (5) | −0.0006 (4) | −0.0007 (3) | 0.0012 (4) |
C21 | 0.0109 (4) | 0.0083 (4) | 0.0128 (4) | 0.0013 (3) | −0.0014 (3) | −0.0006 (3) |
C22 | 0.0116 (4) | 0.0086 (4) | 0.0108 (4) | 0.0000 (3) | 0.0004 (3) | −0.0005 (3) |
C23 | 0.0116 (4) | 0.0083 (4) | 0.0169 (5) | 0.0001 (3) | −0.0016 (3) | −0.0017 (4) |
C24 | 0.0140 (5) | 0.0142 (5) | 0.0390 (7) | −0.0026 (4) | −0.0021 (5) | 0.0093 (5) |
C25 | 0.0122 (4) | 0.0133 (5) | 0.0219 (5) | −0.0007 (4) | −0.0038 (4) | 0.0025 (4) |
C26 | 0.0111 (4) | 0.0092 (4) | 0.0125 (4) | −0.0005 (3) | 0.0003 (3) | 0.0011 (3) |
C27 | 0.0156 (4) | 0.0132 (5) | 0.0132 (4) | −0.0006 (4) | −0.0007 (3) | 0.0019 (4) |
C28 | 0.0153 (5) | 0.0166 (5) | 0.0188 (5) | −0.0007 (4) | −0.0029 (4) | 0.0065 (4) |
C29 | 0.0139 (5) | 0.0131 (5) | 0.0260 (6) | 0.0023 (4) | 0.0018 (4) | 0.0068 (4) |
C30 | 0.0164 (5) | 0.0114 (5) | 0.0215 (5) | 0.0024 (4) | 0.0042 (4) | 0.0004 (4) |
C31 | 0.0147 (4) | 0.0105 (5) | 0.0146 (4) | 0.0013 (4) | 0.0007 (3) | −0.0005 (4) |
S1—C24 | 1.8058 (13) | C14—H14B | 0.9900 |
S1—C25 | 1.8340 (12) | C15—C16 | 1.3923 (15) |
O1—C1 | 1.2178 (12) | C15—C20 | 1.3961 (16) |
O2—C21 | 1.2159 (13) | C16—C17 | 1.3914 (19) |
N1—C25 | 1.4377 (14) | C16—H16A | 0.9500 |
N1—C12 | 1.4589 (14) | C17—C18 | 1.398 (2) |
N1—C23 | 1.4743 (14) | C17—H17A | 0.9500 |
C1—C2 | 1.4724 (15) | C18—C19 | 1.3936 (18) |
C1—C12 | 1.5745 (15) | C18—H18A | 0.9500 |
C2—C3 | 1.3782 (15) | C19—C20 | 1.3939 (16) |
C2—C11 | 1.4090 (14) | C19—H19A | 0.9500 |
C3—C4 | 1.4151 (16) | C20—C21 | 1.4849 (15) |
C3—H3A | 0.9500 | C22—C26 | 1.5152 (15) |
C4—C5 | 1.3849 (16) | C22—C23 | 1.5403 (15) |
C4—H4A | 0.9500 | C22—H22A | 1.0000 |
C5—C6 | 1.4184 (16) | C23—C24 | 1.5502 (16) |
C5—H5A | 0.9500 | C23—H23A | 1.0000 |
C6—C11 | 1.4080 (15) | C24—H24A | 0.9900 |
C6—C7 | 1.4187 (15) | C24—H24B | 0.9900 |
C7—C8 | 1.3766 (17) | C25—H25A | 0.9900 |
C7—H7A | 0.9500 | C25—H25B | 0.9900 |
C8—C9 | 1.4227 (15) | C26—C27 | 1.4014 (15) |
C8—H8A | 0.9500 | C26—C31 | 1.4021 (15) |
C9—C10 | 1.3757 (14) | C27—C28 | 1.3898 (16) |
C9—H9A | 0.9500 | C27—H27A | 0.9500 |
C10—C11 | 1.4142 (15) | C28—C29 | 1.3903 (18) |
C10—C12 | 1.5355 (14) | C28—H28A | 0.9500 |
C12—C13 | 1.5842 (14) | C29—C30 | 1.3914 (18) |
C13—C21 | 1.5405 (15) | C29—H29A | 0.9500 |
C13—C22 | 1.5469 (15) | C30—C31 | 1.3938 (16) |
C13—C14 | 1.5477 (14) | C30—H30A | 0.9500 |
C14—C15 | 1.5071 (16) | C31—H31A | 0.9500 |
C14—H14A | 0.9900 | ||
C24—S1—C25 | 90.66 (6) | C17—C16—H16A | 120.8 |
C25—N1—C12 | 118.57 (9) | C15—C16—H16A | 120.8 |
C25—N1—C23 | 112.52 (9) | C16—C17—C18 | 121.35 (11) |
C12—N1—C23 | 111.82 (8) | C16—C17—H17A | 119.3 |
O1—C1—C2 | 127.04 (10) | C18—C17—H17A | 119.3 |
O1—C1—C12 | 124.22 (10) | C19—C18—C17 | 120.49 (12) |
C2—C1—C12 | 108.47 (8) | C19—C18—H18A | 119.8 |
C3—C2—C11 | 120.75 (10) | C17—C18—H18A | 119.8 |
C3—C2—C1 | 132.42 (10) | C18—C19—C20 | 117.75 (12) |
C11—C2—C1 | 106.65 (9) | C18—C19—H19A | 121.1 |
C2—C3—C4 | 117.61 (10) | C20—C19—H19A | 121.1 |
C2—C3—H3A | 121.2 | C19—C20—C15 | 121.95 (10) |
C4—C3—H3A | 121.2 | C19—C20—C21 | 129.39 (11) |
C5—C4—C3 | 122.18 (11) | C15—C20—C21 | 108.61 (9) |
C5—C4—H4A | 118.9 | O2—C21—C20 | 127.67 (10) |
C3—C4—H4A | 118.9 | O2—C21—C13 | 125.94 (10) |
C4—C5—C6 | 120.74 (10) | C20—C21—C13 | 106.38 (9) |
C4—C5—H5A | 119.6 | C26—C22—C23 | 116.28 (9) |
C6—C5—H5A | 119.6 | C26—C22—C13 | 115.74 (8) |
C11—C6—C5 | 116.48 (10) | C23—C22—C13 | 102.74 (8) |
C11—C6—C7 | 116.58 (10) | C26—C22—H22A | 107.2 |
C5—C6—C7 | 126.94 (10) | C23—C22—H22A | 107.2 |
C8—C7—C6 | 119.58 (10) | C13—C22—H22A | 107.2 |
C8—C7—H7A | 120.2 | N1—C23—C22 | 104.53 (8) |
C6—C7—H7A | 120.2 | N1—C23—C24 | 110.13 (9) |
C7—C8—C9 | 122.68 (10) | C22—C23—C24 | 115.81 (10) |
C7—C8—H8A | 118.7 | N1—C23—H23A | 108.7 |
C9—C8—H8A | 118.7 | C22—C23—H23A | 108.7 |
C10—C9—C8 | 119.27 (10) | C24—C23—H23A | 108.7 |
C10—C9—H9A | 120.4 | C23—C24—S1 | 108.40 (8) |
C8—C9—H9A | 120.4 | C23—C24—H24A | 110.0 |
C9—C10—C11 | 117.72 (9) | S1—C24—H24A | 110.0 |
C9—C10—C12 | 133.78 (10) | C23—C24—H24B | 110.0 |
C11—C10—C12 | 108.49 (8) | S1—C24—H24B | 110.0 |
C6—C11—C2 | 122.16 (10) | H24A—C24—H24B | 108.4 |
C6—C11—C10 | 124.16 (9) | N1—C25—S1 | 107.95 (8) |
C2—C11—C10 | 113.65 (9) | N1—C25—H25A | 110.1 |
N1—C12—C10 | 119.20 (8) | S1—C25—H25A | 110.1 |
N1—C12—C1 | 109.29 (8) | N1—C25—H25B | 110.1 |
C10—C12—C1 | 101.25 (8) | S1—C25—H25B | 110.1 |
N1—C12—C13 | 100.13 (8) | H25A—C25—H25B | 108.4 |
C10—C12—C13 | 114.42 (8) | C27—C26—C31 | 117.89 (10) |
C1—C12—C13 | 112.98 (8) | C27—C26—C22 | 119.08 (9) |
C21—C13—C22 | 115.93 (8) | C31—C26—C22 | 123.02 (10) |
C21—C13—C14 | 102.72 (8) | C28—C27—C26 | 121.35 (11) |
C22—C13—C14 | 116.20 (8) | C28—C27—H27A | 119.3 |
C21—C13—C12 | 111.40 (8) | C26—C27—H27A | 119.3 |
C22—C13—C12 | 100.58 (8) | C27—C28—C29 | 120.14 (11) |
C14—C13—C12 | 110.24 (8) | C27—C28—H28A | 119.9 |
C15—C14—C13 | 102.98 (8) | C29—C28—H28A | 119.9 |
C15—C14—H14A | 111.2 | C28—C29—C30 | 119.35 (11) |
C13—C14—H14A | 111.2 | C28—C29—H29A | 120.3 |
C15—C14—H14B | 111.2 | C30—C29—H29A | 120.3 |
C13—C14—H14B | 111.2 | C29—C30—C31 | 120.52 (11) |
H14A—C14—H14B | 109.1 | C29—C30—H30A | 119.7 |
C16—C15—C20 | 119.94 (11) | C31—C30—H30A | 119.7 |
C16—C15—C14 | 129.15 (11) | C30—C31—C26 | 120.73 (11) |
C20—C15—C14 | 110.90 (9) | C30—C31—H31A | 119.6 |
C17—C16—C15 | 118.45 (12) | C26—C31—H31A | 119.6 |
O1—C1—C2—C3 | 11.8 (2) | C12—C13—C14—C15 | −90.66 (10) |
C12—C1—C2—C3 | −173.99 (11) | C13—C14—C15—C16 | 158.41 (11) |
O1—C1—C2—C11 | −163.15 (11) | C13—C14—C15—C20 | −22.15 (11) |
C12—C1—C2—C11 | 11.09 (11) | C20—C15—C16—C17 | −1.61 (17) |
C11—C2—C3—C4 | 0.66 (16) | C14—C15—C16—C17 | 177.78 (11) |
C1—C2—C3—C4 | −173.68 (11) | C15—C16—C17—C18 | −0.76 (18) |
C2—C3—C4—C5 | 1.38 (17) | C16—C17—C18—C19 | 1.58 (19) |
C3—C4—C5—C6 | −1.31 (18) | C17—C18—C19—C20 | 0.02 (18) |
C4—C5—C6—C11 | −0.79 (16) | C18—C19—C20—C15 | −2.44 (17) |
C4—C5—C6—C7 | 179.17 (11) | C18—C19—C20—C21 | 174.76 (11) |
C11—C6—C7—C8 | −0.39 (16) | C16—C15—C20—C19 | 3.28 (17) |
C5—C6—C7—C8 | 179.66 (12) | C14—C15—C20—C19 | −176.22 (10) |
C6—C7—C8—C9 | −0.32 (18) | C16—C15—C20—C21 | −174.43 (10) |
C7—C8—C9—C10 | 0.68 (17) | C14—C15—C20—C21 | 6.07 (12) |
C8—C9—C10—C11 | −0.29 (16) | C19—C20—C21—O2 | 15.01 (19) |
C8—C9—C10—C12 | −179.68 (11) | C15—C20—C21—O2 | −167.50 (11) |
C5—C6—C11—C2 | 2.84 (16) | C19—C20—C21—C13 | −164.61 (11) |
C7—C6—C11—C2 | −177.12 (10) | C15—C20—C21—C13 | 12.88 (12) |
C5—C6—C11—C10 | −179.25 (10) | C22—C13—C21—O2 | 26.92 (15) |
C7—C6—C11—C10 | 0.79 (16) | C14—C13—C21—O2 | 154.73 (11) |
C3—C2—C11—C6 | −2.84 (16) | C12—C13—C21—O2 | −87.27 (13) |
C1—C2—C11—C6 | 172.80 (10) | C22—C13—C21—C20 | −153.45 (9) |
C3—C2—C11—C10 | 179.05 (10) | C14—C13—C21—C20 | −25.64 (10) |
C1—C2—C11—C10 | −5.31 (12) | C12—C13—C21—C20 | 92.35 (10) |
C9—C10—C11—C6 | −0.45 (16) | C21—C13—C22—C26 | 70.82 (11) |
C12—C10—C11—C6 | 179.09 (10) | C14—C13—C22—C26 | −49.99 (12) |
C9—C10—C11—C2 | 177.62 (10) | C12—C13—C22—C26 | −168.95 (8) |
C12—C10—C11—C2 | −2.84 (12) | C21—C13—C22—C23 | −161.38 (8) |
C25—N1—C12—C10 | −37.51 (14) | C14—C13—C22—C23 | 77.81 (10) |
C23—N1—C12—C10 | 95.94 (11) | C12—C13—C22—C23 | −41.15 (9) |
C25—N1—C12—C1 | 78.11 (11) | C25—N1—C23—C22 | 140.45 (9) |
C23—N1—C12—C1 | −148.44 (8) | C12—N1—C23—C22 | 4.10 (11) |
C25—N1—C12—C13 | −163.03 (9) | C25—N1—C23—C24 | 15.42 (13) |
C23—N1—C12—C13 | −29.58 (10) | C12—N1—C23—C24 | −120.94 (10) |
C9—C10—C12—N1 | −51.77 (16) | C26—C22—C23—N1 | 151.58 (9) |
C11—C10—C12—N1 | 128.81 (10) | C13—C22—C23—N1 | 24.12 (10) |
C9—C10—C12—C1 | −171.57 (12) | C26—C22—C23—C24 | −87.07 (12) |
C11—C10—C12—C1 | 9.00 (10) | C13—C22—C23—C24 | 145.48 (9) |
C9—C10—C12—C13 | 66.60 (15) | N1—C23—C24—S1 | 7.73 (12) |
C11—C10—C12—C13 | −112.83 (10) | C22—C23—C24—S1 | −110.57 (10) |
O1—C1—C12—N1 | 35.65 (13) | C25—S1—C24—C23 | −21.26 (10) |
C2—C1—C12—N1 | −138.80 (9) | C12—N1—C25—S1 | 101.83 (9) |
O1—C1—C12—C10 | 162.27 (10) | C23—N1—C25—S1 | −31.32 (11) |
C2—C1—C12—C10 | −12.17 (10) | C24—S1—C25—N1 | 30.36 (9) |
O1—C1—C12—C13 | −74.89 (13) | C23—C22—C26—C27 | 147.99 (10) |
C2—C1—C12—C13 | 110.66 (9) | C13—C22—C26—C27 | −91.27 (12) |
N1—C12—C13—C21 | 166.23 (8) | C23—C22—C26—C31 | −32.59 (14) |
C10—C12—C13—C21 | 37.52 (11) | C13—C22—C26—C31 | 88.14 (12) |
C1—C12—C13—C21 | −77.65 (10) | C31—C26—C27—C28 | −0.97 (16) |
N1—C12—C13—C22 | 42.79 (9) | C22—C26—C27—C28 | 178.47 (10) |
C10—C12—C13—C22 | −85.92 (10) | C26—C27—C28—C29 | 0.96 (17) |
C1—C12—C13—C22 | 158.92 (8) | C27—C28—C29—C30 | 0.09 (17) |
N1—C12—C13—C14 | −80.40 (9) | C28—C29—C30—C31 | −1.11 (17) |
C10—C12—C13—C14 | 150.88 (9) | C29—C30—C31—C26 | 1.10 (17) |
C1—C12—C13—C14 | 35.72 (11) | C27—C26—C31—C30 | −0.06 (16) |
C21—C13—C14—C15 | 28.15 (10) | C22—C26—C31—C30 | −179.48 (10) |
C22—C13—C14—C15 | 155.79 (9) |
Cg1 and Cg2 are the centroids of the C2–C6/C11 and C15–C20 rings, respectively. |
D—H···A | D—H | H···A | D···A | D—H···A |
C4—H4A···O1i | 0.95 | 2.58 | 3.2598 (14) | 129 |
C23—H23A···O1ii | 1.00 | 2.46 | 3.4180 (14) | 160 |
C31—H31A···O1ii | 0.95 | 2.56 | 3.4434 (14) | 155 |
C7—H7A···O2iii | 0.95 | 2.54 | 3.4111 (14) | 152 |
C18—H18A···Cg1iv | 0.95 | 2.91 | 3.5502 (14) | 126 |
C25—H25A···Cg2v | 0.99 | 2.68 | 3.5182 (13) | 142 |
Symmetry codes: (i) −x+1, y−1/2, −z+1/2; (ii) −x+1, y+1/2, −z+1/2; (iii) −x+1, −y, −z; (iv) x−1, y, z; (v) x+1, y, z. |
Experimental details
Crystal data | |
Chemical formula | C31H23NO2S |
Mr | 473.56 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 100 |
a, b, c (Å) | 8.4054 (1), 11.3716 (1), 23.5194 (2) |
β (°) | 92.259 (1) |
V (Å3) | 2246.30 (4) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.18 |
Crystal size (mm) | 0.30 × 0.18 × 0.16 |
Data collection | |
Diffractometer | Bruker SMART APEXII CCD |
Absorption correction | Multi-scan (SADABS; Bruker, 2009) |
Tmin, Tmax | 0.949, 0.972 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 39597, 10047, 7694 |
Rint | 0.039 |
(sin θ/λ)max (Å−1) | 0.813 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.051, 0.124, 1.03 |
No. of reflections | 10047 |
No. of parameters | 316 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.58, −0.29 |
Computer programs: APEX2 (Bruker, 2009), SAINT (Bruker, 2009), SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).
Cg1 and Cg2 are the centroids of the C2–C6/C11 and C15–C20 rings, respectively. |
D—H···A | D—H | H···A | D···A | D—H···A |
C4—H4A···O1i | 0.95 | 2.58 | 3.2598 (14) | 129 |
C23—H23A···O1ii | 1.00 | 2.46 | 3.4180 (14) | 160 |
C31—H31A···O1ii | 0.95 | 2.56 | 3.4434 (14) | 155 |
C7—H7A···O2iii | 0.95 | 2.54 | 3.4111 (14) | 152 |
C18—H18A···Cg1iv | 0.95 | 2.91 | 3.5502 (14) | 126 |
C25—H25A···Cg2v | 0.99 | 2.68 | 3.5182 (13) | 142 |
Symmetry codes: (i) −x+1, y−1/2, −z+1/2; (ii) −x+1, y+1/2, −z+1/2; (iii) −x+1, −y, −z; (iv) x−1, y, z; (v) x+1, y, z. |
Footnotes
‡Thomson Reuters ResearcherID: A-5599-2009.
Acknowledgements
The authors wish to express their thanks to the Pharmacogenetic and Novel Therapeutic Research, Institute for Research in Molecular Medicine, Universiti Sains Malysia, Penang and the Malaysian Goverment for the Research University grant Nos. 1001/PSK/8620012 and 1001/PFIZIK/811151 and also providing research facilities.
References
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Cremer, D. & Pople, J. A. (1975). J. Am. Chem. Soc. 97, 1354–1358. CrossRef CAS Web of Science Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
As part of our ongoing search to prepare heterocyclic compounds with potential antitubercular activity (Wei et al., 2011a,b), we have synthesized the title compound as described below.
In the molecular structure (Fig 1), the pyrrolidine ring (N1/C12/C13/C22/C23) is in envelope conformation (Cremer & Pople, 1975) [puckering parameters, Q= 0.4480 (11) Å and φ= 68.75 (14)° with atom C13 at the flap]. Meanwhile, the thiazolidine ring and the two cyclopentane rings (S1/N1/C23–C25, C1/C2/C10–C12 & C13–C15/C20/C21) are twisted about C25–S1 bond [puckering parameters, Q= 0.3450 (11) Å and φ= 339.37 (19)°], C12–C1 bond [puckering parameters, Q= 0.1209 (11) Å and φ= 167.0 (5)°] and C13–S14 bond [puckering parameters, Q= 0.2875 (11) Å and φ= 190.5 (2)°], respectively, adopting half-chair conformation. In addition, the dihedral angles between the mean plane through the hexahydropyrrolo [1,2-c]thiazole ring (S1/N1/C12/C13/C22–C25) [r.m.s deviation of 0.400 (1) Å] with the benzene ring (C26–C31) and the mean planes of the dihydroacenaphthylene and the dihydro-indene rings (C1–C10/C12 & C13–C21) are 76.83 (4), 80.70 (5) and 79.00 (4)°, respectively. The bond lengths and angles are within normal ranges and comparable to the related structure (Wei, et al., 2011b; Wei, et al., 2012).
The crystal packing is shown in Fig. 2. The molecules are linked into sheets lying parallel to bc-plane via C7—H7A···O2, C4—H4A···O1, C23—H23A···O1 and C31—H31A···O1 (Table 1) hydrogen bonds. The crystal structure also features C18—H18A···Cg1 and C25—H25A···Cg2 (Table 1) interactions (Cg1 and Cg2 are the centroids of the C2–C6/C11 and C15–C20 rings, respectively).