metal-organic compounds
catena-Poly[[[aquamanganese(III)]-μ-(E)-5-bromo-N-[2-(5-bromo-2-oxidobenzylideneamino)-4-nitrophenyl]-2-oxidobenzamidato] N,N-dimethylfomamide monosolvate]
aSchool of Chemical Sciences, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia, and bX-ray Crystallography Unit, School of Physics, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia
*Correspondence e-mail: hkfun@usm.my
The 20H10Br2N3O5)(H2O)]·(CH3)2NCHO}n, consists of one MnIII ion, one (E)-5-bromo-N-[2-(5-bromo-2-oxidobenzylideneamino)-4-nitrophenyl]-2-oxidobenzamidate ligand (Schiff base), one water molecule and an N,N-dimethylformamide molecule. The coordination geometry around the MnIII ion is a distorted octahedron, being surrounded by two O and two N atoms from the Schiff base, which are positioned in the equatorial plane. The water molecule and the O atom of the carbonyl group from the adjacent MnIII complex are situated at the axial positions, leading to a polymeric chain along the c axis. In the crystal, the complex and N,N-dimethylformamide molecules are connected via O—H⋯O, C—H⋯O and C—H⋯Br hydrogen bonds, forming a three-dimensional network.
of the title complex, {[Mn(CRelated literature
For details of the coordination chemistry and biological importance of manganese, see: Maneiro et al. (2003); Chandra et al. (2009); Chrisianson & Cox (1999); Ni et al. (2009); Zhang et al. (2005); Huh & Lee (2008); Pastoriza-Santos & Liz-Marzań (2009). For related structures, see: Su & Xu (2005); Ma et al. (2004). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986).
Experimental
Crystal data
|
Refinement
|
Data collection: APEX2 (Bruker, 2009); cell SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009).
Supporting information
10.1107/S1600536812008501/is5080sup1.cif
contains datablocks global, I, an. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536812008501/is5080Isup2.hkl
To the solution of 4-nitrobenzene-1,2-diamine (0.306 g, 2 mmol) in ethanol (30 mL) was added 5-bromo-2-hydroxybenzaldehyde (0.804 g, 4 mmol), after which the colour of solution became orange. The mixture was refluxed with stirring for three hours. On adding manganese(II) chloride (0.395 g, 2 mmol), followed by triethylamine (500 mL, 3.6 mmol), a brown precipitate was formed. The mixture was stirred with reflux for three hours. The precipitate, obtained by filtration, was washed by ethanol (5 mL) and dried, affording the title compound (87.33 % yield). Brown block-shaped single crystals suitable for X-ray ν = 3370 (-OH), 1612 (C═N), 1335 (NO2), 639 (M–N), 480 (M–O) cm-1. Anal. Calcd (found) for [C20H15Br2N3O6Mn].C3H7NO: C 39.50 (39.55), H 2.49 (2.11), N 6.91 (6.55), Mn 9.03 (8.66). MASS Calcd (found) m/z: [605.87 - 2H2O]+ = 569.87 (571.9).
were obtained from DMF: ethanol mixture (2:8) with decomposition pt. >340 °C. IR spectroscopy (KBr):Atoms H1W2 and H2W2 were located from a difference Fourier map and refined freely [O—H = 0.72 (4) and 0.77 (3) Å]. The remaining H atoms were positioned geometrically [C—H = 0.93–0.96 Å] and were refined using a riding model, with Uiso(H) = 1.2 or 1.5 Ueq(C). A rotating group model was applied to the methyl groups. The highest residual electron density peak is located at 0.75 Å from atom Br1 and the deepest hole is located at 0.66 Å from atom Br2.
In recent years, the coordination chemistry of manganese has been intensively studied due to its presence in the active sites of some enzymes that participate in the chemistry of reactive oxygen species, such as the participation of Mn(II) complexes in peroxidase activity (Maneiro et al., 2003), antipathogenic activity (Chandra et al., 2009) and as essential cofactors in metalloenzymes (Chrisianson & Cox, 1999). X-Ray crystallography has shown a quasi- two-coordinate strongly bent geometry with Mn, which has an almost linear geometry with a wide N—Mn—N angle of 176.1° (Ni et al., 2009). Octahedral coordination is completed by N4O2 ligands (Zhang et al., 2005). The reaction system (solvent composition and reaction temperature) may cause dramatic changes in the structures. The preparation of the polymer results in the introduction of guest molecules such as DMF into its empty channels by the use of mixed solvents DMF-EtOH-H2O under hydro(solvo)thermal conditions (Huh & Lee, 2008). The mechanism of oxidation by DMF have been proposed by Pastoriza-Santos & Liz-Marzań (2009). Due to these interesting features, the title compound was synthesized and its
presented here.The
of the title polymeric complex, consisting of one Mn (III) ion, one (E)-5-bromo-N-(2- (5-bromo-2-hydroxybenzylideneamino)-4-nitrophenyl)-2-hydroxybenzamide (Schiff base), one water molecule and a dimethylformamide solvate molecule is shown in Fig. 1. The coordination geometry around Mn (III) is a distorted octahedron, with the Mn (III) ion being surrounded by two O and two N atoms from the Schiff base which are positioned in the equatorial plane. The water molecule and an atom from a carbonyl group are situated in the axial positions. The carbonyl groups bridge the Mn (III) ions, leading to polymeric chains along the c-axis (Fig. 2). The bond lengths are Mn1—O2 = 1.8557 (13); Mn1—O1 = 1.8875 (13); Mn1—N2 = 1.9750 (15); Mn1—N1 = 1.9782 (15); Mn1—O1W =2.2431(15; Mn1—O6 = 2.3448 (14) Å. All bond lengths are in agreement with those in the related structures (Su & Xu, 2005; Ma et al., 2004). In the crystal, (Fig. 3), the complexes are connected with the solvent molecules via O—H···O, C—H···O and C—H···Br hydrogen bonds (Table 1) to form a three-dimensional network.For details of the coordination chemistry and biological importance of manganese, see: Maneiro et al. (2003); Chandra et al. (2009); Chrisianson & Cox (1999); Ni et al. (2009); Zhang et al. (2005); Huh & Lee (2008); Pastoriza-Santos & Liz-Marzań (2009). For related structures, see: Su & Xu (2005); Ma et al. (2004). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986).
Data collection: APEX2 (Bruker, 2009); cell
SAINT (Bruker, 2009); data reduction: SAINT (Bruker, 2009); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).Fig. 1. The asymmetric unit of the title compound, showing 30% probability displacement ellipsoids and the atom-numbering scheme. | |
Fig. 2. : The polymeric chain of the title compound along the c-axis. H atoms and solvent molecules omitted for clarity. | |
Fig. 3. The crystal packing of the title compound, showing a 3D molecular network. |
[Mn(C20H10Br2N3O5)(H2O)]·C3H7NO | F(000) = 1344 |
Mr = 678.18 | Dx = 1.875 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 7902 reflections |
a = 11.0746 (6) Å | θ = 3.2–31.8° |
b = 24.9781 (13) Å | µ = 3.93 mm−1 |
c = 9.5563 (5) Å | T = 100 K |
β = 114.658 (1)° | Block, brown |
V = 2402.4 (2) Å3 | 0.52 × 0.17 × 0.11 mm |
Z = 4 |
Bruker APEXII DUO CCD area-detector diffractometer | 8188 independent reflections |
Radiation source: fine-focus sealed tube | 6617 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.032 |
φ and ω scans | θmax = 31.8°, θmin = 2.6° |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | h = −16→16 |
Tmin = 0.234, Tmax = 0.672 | k = −36→37 |
27005 measured reflections | l = −14→14 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.034 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.085 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.02 | w = 1/[σ2(Fo2) + (0.041P)2 + 1.7977P] where P = (Fo2 + 2Fc2)/3 |
8188 reflections | (Δ/σ)max = 0.003 |
344 parameters | Δρmax = 1.85 e Å−3 |
0 restraints | Δρmin = −0.62 e Å−3 |
[Mn(C20H10Br2N3O5)(H2O)]·C3H7NO | V = 2402.4 (2) Å3 |
Mr = 678.18 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 11.0746 (6) Å | µ = 3.93 mm−1 |
b = 24.9781 (13) Å | T = 100 K |
c = 9.5563 (5) Å | 0.52 × 0.17 × 0.11 mm |
β = 114.658 (1)° |
Bruker APEXII DUO CCD area-detector diffractometer | 8188 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | 6617 reflections with I > 2σ(I) |
Tmin = 0.234, Tmax = 0.672 | Rint = 0.032 |
27005 measured reflections |
R[F2 > 2σ(F2)] = 0.034 | 0 restraints |
wR(F2) = 0.085 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.02 | Δρmax = 1.85 e Å−3 |
8188 reflections | Δρmin = −0.62 e Å−3 |
344 parameters |
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1)K. |
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Mn1 | 0.32207 (3) | 0.285186 (10) | 1.10714 (3) | 0.01283 (6) | |
Br1 | 0.39872 (2) | −0.002567 (8) | 1.29527 (2) | 0.02540 (6) | |
Br2 | 0.00337 (3) | 0.540295 (9) | 0.75613 (3) | 0.03831 (8) | |
O1 | 0.19454 (14) | 0.31410 (5) | 0.92195 (14) | 0.0161 (2) | |
O2 | 0.28189 (14) | 0.21775 (5) | 1.01810 (15) | 0.0162 (3) | |
O3 | 0.65113 (16) | 0.47920 (6) | 1.64497 (17) | 0.0250 (3) | |
O4 | 0.76182 (19) | 0.42584 (7) | 1.83364 (18) | 0.0345 (4) | |
N1 | 0.37015 (15) | 0.35574 (6) | 1.20959 (17) | 0.0132 (3) | |
N2 | 0.44814 (15) | 0.25853 (6) | 1.31031 (17) | 0.0130 (3) | |
N3 | 0.68440 (17) | 0.43404 (7) | 1.69974 (19) | 0.0196 (3) | |
C1 | 0.15509 (18) | 0.36422 (7) | 0.8920 (2) | 0.0155 (3) | |
C2 | 0.0566 (2) | 0.37633 (8) | 0.7440 (2) | 0.0207 (4) | |
H2 | 0.0211 | 0.3490 | 0.6722 | 0.025* | |
C3 | 0.0124 (2) | 0.42798 (8) | 0.7046 (2) | 0.0239 (4) | |
H3 | −0.0516 | 0.4355 | 0.6063 | 0.029* | |
C4 | 0.0636 (2) | 0.46918 (8) | 0.8124 (3) | 0.0240 (4) | |
C5 | 0.1582 (2) | 0.45925 (8) | 0.9576 (2) | 0.0212 (4) | |
H5 | 0.1906 | 0.4870 | 1.0283 | 0.025* | |
C6 | 0.20647 (19) | 0.40668 (7) | 0.9997 (2) | 0.0163 (3) | |
C7 | 0.30926 (19) | 0.40035 (7) | 1.1515 (2) | 0.0154 (3) | |
H7 | 0.3347 | 0.4306 | 1.2137 | 0.019* | |
C8 | 0.47310 (18) | 0.35266 (7) | 1.36140 (19) | 0.0130 (3) | |
C9 | 0.53061 (18) | 0.39672 (7) | 1.4535 (2) | 0.0149 (3) | |
H9 | 0.5039 | 0.4313 | 1.4178 | 0.018* | |
C10 | 0.62842 (19) | 0.38799 (7) | 1.5994 (2) | 0.0157 (3) | |
C11 | 0.6734 (2) | 0.33696 (8) | 1.6552 (2) | 0.0177 (3) | |
H11 | 0.7412 | 0.3324 | 1.7530 | 0.021* | |
C12 | 0.6157 (2) | 0.29309 (7) | 1.5628 (2) | 0.0169 (3) | |
H12 | 0.6452 | 0.2588 | 1.5986 | 0.020* | |
C13 | 0.51269 (18) | 0.30003 (7) | 1.4150 (2) | 0.0135 (3) | |
C14 | 0.44056 (18) | 0.20846 (7) | 1.3632 (2) | 0.0141 (3) | |
C15 | 0.38604 (18) | 0.16400 (7) | 1.2496 (2) | 0.0142 (3) | |
C16 | 0.41170 (19) | 0.11188 (7) | 1.3105 (2) | 0.0162 (3) | |
H16 | 0.4619 | 0.1069 | 1.4155 | 0.019* | |
C17 | 0.3626 (2) | 0.06804 (7) | 1.2151 (2) | 0.0177 (3) | |
C18 | 0.2833 (2) | 0.07434 (7) | 1.0590 (2) | 0.0182 (3) | |
H18 | 0.2489 | 0.0446 | 0.9964 | 0.022* | |
C19 | 0.25639 (19) | 0.12505 (7) | 0.9983 (2) | 0.0166 (3) | |
H19 | 0.2018 | 0.1294 | 0.8943 | 0.020* | |
C20 | 0.30947 (18) | 0.17067 (7) | 1.0900 (2) | 0.0138 (3) | |
O6 | 0.47681 (14) | 0.19817 (5) | 1.50376 (15) | 0.0162 (3) | |
O1W | 0.15751 (15) | 0.28059 (7) | 1.18541 (18) | 0.0203 (3) | |
O5 | 0.94801 (16) | 0.27762 (6) | 1.48344 (18) | 0.0259 (3) | |
N4 | 0.84158 (18) | 0.32089 (7) | 1.2543 (2) | 0.0202 (3) | |
C21 | 0.9247 (2) | 0.28447 (8) | 1.3460 (3) | 0.0232 (4) | |
H21 | 0.9687 | 0.2625 | 1.3039 | 0.028* | |
C22 | 0.7663 (2) | 0.35587 (9) | 1.3091 (3) | 0.0269 (4) | |
H22A | 0.7843 | 0.3468 | 1.4135 | 0.040* | |
H22B | 0.6731 | 0.3516 | 1.2455 | 0.040* | |
H22C | 0.7915 | 0.3924 | 1.3044 | 0.040* | |
C23 | 0.8221 (2) | 0.32762 (9) | 1.0947 (2) | 0.0250 (4) | |
H23A | 0.8686 | 0.2998 | 1.0680 | 0.037* | |
H23B | 0.8558 | 0.3619 | 1.0826 | 0.037* | |
H23C | 0.7290 | 0.3255 | 1.0285 | 0.037* | |
H1W2 | 0.110 (4) | 0.2602 (15) | 1.142 (4) | 0.051 (11)* | |
H2W2 | 0.180 (3) | 0.2712 (12) | 1.269 (4) | 0.034 (8)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Mn1 | 0.01673 (13) | 0.01111 (12) | 0.00881 (11) | −0.00105 (9) | 0.00349 (10) | −0.00144 (9) |
Br1 | 0.03687 (12) | 0.01250 (9) | 0.02373 (10) | 0.00229 (8) | 0.00957 (9) | 0.00146 (7) |
Br2 | 0.03147 (13) | 0.01713 (10) | 0.04152 (14) | 0.00359 (8) | −0.00934 (10) | 0.00522 (9) |
O1 | 0.0204 (6) | 0.0140 (6) | 0.0106 (5) | −0.0001 (5) | 0.0030 (5) | −0.0002 (4) |
O2 | 0.0241 (7) | 0.0107 (6) | 0.0119 (5) | −0.0022 (5) | 0.0057 (5) | −0.0014 (4) |
O3 | 0.0333 (8) | 0.0129 (6) | 0.0223 (7) | −0.0034 (6) | 0.0050 (6) | −0.0013 (5) |
O4 | 0.0465 (10) | 0.0217 (7) | 0.0162 (7) | −0.0040 (7) | −0.0059 (7) | −0.0030 (6) |
N1 | 0.0153 (7) | 0.0128 (6) | 0.0105 (6) | −0.0011 (5) | 0.0043 (5) | −0.0012 (5) |
N2 | 0.0158 (7) | 0.0113 (6) | 0.0106 (6) | −0.0006 (5) | 0.0044 (5) | −0.0018 (5) |
N3 | 0.0230 (8) | 0.0168 (7) | 0.0161 (7) | −0.0034 (6) | 0.0052 (6) | −0.0032 (6) |
C1 | 0.0163 (8) | 0.0155 (8) | 0.0132 (7) | −0.0015 (6) | 0.0047 (6) | −0.0003 (6) |
C2 | 0.0209 (9) | 0.0195 (9) | 0.0151 (8) | −0.0017 (7) | 0.0011 (7) | 0.0001 (7) |
C3 | 0.0203 (9) | 0.0212 (9) | 0.0204 (9) | 0.0007 (7) | −0.0013 (8) | 0.0041 (7) |
C4 | 0.0218 (10) | 0.0160 (8) | 0.0261 (10) | 0.0017 (7) | 0.0019 (8) | 0.0038 (7) |
C5 | 0.0193 (9) | 0.0146 (8) | 0.0222 (9) | 0.0002 (7) | 0.0014 (7) | −0.0002 (7) |
C6 | 0.0172 (8) | 0.0150 (8) | 0.0137 (8) | −0.0003 (6) | 0.0034 (7) | −0.0005 (6) |
C7 | 0.0170 (8) | 0.0136 (7) | 0.0143 (8) | 0.0000 (6) | 0.0050 (7) | −0.0012 (6) |
C8 | 0.0138 (8) | 0.0128 (7) | 0.0107 (7) | −0.0004 (6) | 0.0036 (6) | −0.0010 (6) |
C9 | 0.0164 (8) | 0.0137 (7) | 0.0142 (7) | −0.0011 (6) | 0.0059 (6) | −0.0014 (6) |
C10 | 0.0186 (8) | 0.0141 (8) | 0.0129 (7) | −0.0038 (6) | 0.0050 (7) | −0.0043 (6) |
C11 | 0.0195 (9) | 0.0167 (8) | 0.0125 (7) | −0.0011 (7) | 0.0024 (7) | −0.0011 (6) |
C12 | 0.0203 (9) | 0.0137 (8) | 0.0138 (8) | −0.0010 (7) | 0.0044 (7) | −0.0011 (6) |
C13 | 0.0156 (8) | 0.0133 (7) | 0.0115 (7) | −0.0011 (6) | 0.0058 (6) | −0.0019 (6) |
C14 | 0.0150 (8) | 0.0129 (7) | 0.0134 (7) | −0.0003 (6) | 0.0049 (6) | −0.0007 (6) |
C15 | 0.0176 (8) | 0.0135 (7) | 0.0115 (7) | −0.0009 (6) | 0.0059 (6) | −0.0008 (6) |
C16 | 0.0193 (9) | 0.0133 (8) | 0.0152 (8) | 0.0003 (6) | 0.0063 (7) | 0.0003 (6) |
C17 | 0.0215 (9) | 0.0113 (7) | 0.0210 (9) | 0.0007 (7) | 0.0096 (7) | 0.0009 (6) |
C18 | 0.0222 (9) | 0.0134 (8) | 0.0180 (8) | −0.0036 (7) | 0.0075 (7) | −0.0040 (6) |
C19 | 0.0205 (9) | 0.0150 (8) | 0.0126 (7) | −0.0029 (7) | 0.0052 (7) | −0.0030 (6) |
C20 | 0.0165 (8) | 0.0125 (7) | 0.0134 (7) | −0.0007 (6) | 0.0073 (6) | −0.0014 (6) |
O6 | 0.0196 (6) | 0.0164 (6) | 0.0120 (6) | 0.0000 (5) | 0.0058 (5) | 0.0006 (5) |
O1W | 0.0181 (7) | 0.0288 (8) | 0.0123 (6) | −0.0024 (6) | 0.0046 (5) | 0.0010 (6) |
O5 | 0.0249 (8) | 0.0265 (8) | 0.0253 (7) | 0.0055 (6) | 0.0093 (6) | 0.0059 (6) |
N4 | 0.0217 (8) | 0.0207 (8) | 0.0197 (8) | 0.0021 (6) | 0.0099 (7) | 0.0001 (6) |
C21 | 0.0229 (10) | 0.0222 (9) | 0.0262 (10) | 0.0029 (8) | 0.0120 (8) | 0.0009 (8) |
C22 | 0.0294 (11) | 0.0281 (10) | 0.0262 (10) | 0.0088 (9) | 0.0146 (9) | 0.0024 (8) |
C23 | 0.0290 (11) | 0.0268 (10) | 0.0200 (9) | 0.0002 (8) | 0.0110 (8) | 0.0002 (8) |
Mn1—O2 | 1.8557 (13) | C9—H9 | 0.9300 |
Mn1—O1 | 1.8875 (13) | C10—C11 | 1.391 (3) |
Mn1—N2 | 1.9750 (15) | C11—C12 | 1.385 (3) |
Mn1—N1 | 1.9782 (15) | C11—H11 | 0.9300 |
Mn1—O1W | 2.2431 (15) | C12—C13 | 1.408 (3) |
Mn1—O6i | 2.3448 (14) | C12—H12 | 0.9300 |
Br1—C17 | 1.8977 (18) | C14—O6 | 1.258 (2) |
Br2—C4 | 1.895 (2) | C14—C15 | 1.493 (2) |
O1—C1 | 1.317 (2) | C15—C16 | 1.406 (2) |
O2—C20 | 1.331 (2) | C15—C20 | 1.412 (2) |
O3—N3 | 1.233 (2) | C16—C17 | 1.383 (3) |
O4—N3 | 1.224 (2) | C16—H16 | 0.9300 |
N1—C7 | 1.301 (2) | C17—C18 | 1.389 (3) |
N1—C8 | 1.425 (2) | C18—C19 | 1.373 (3) |
N2—C14 | 1.365 (2) | C18—H18 | 0.9300 |
N2—C13 | 1.410 (2) | C19—C20 | 1.407 (2) |
N3—C10 | 1.460 (2) | C19—H19 | 0.9300 |
C1—C2 | 1.412 (3) | O6—Mn1ii | 2.3448 (14) |
C1—C6 | 1.421 (3) | O1W—H1W2 | 0.72 (4) |
C2—C3 | 1.375 (3) | O1W—H2W2 | 0.77 (3) |
C2—H2 | 0.9300 | O5—C21 | 1.240 (3) |
C3—C4 | 1.398 (3) | N4—C21 | 1.331 (3) |
C3—H3 | 0.9300 | N4—C22 | 1.448 (3) |
C4—C5 | 1.368 (3) | N4—C23 | 1.458 (3) |
C5—C6 | 1.412 (3) | C21—H21 | 0.9300 |
C5—H5 | 0.9300 | C22—H22A | 0.9600 |
C6—C7 | 1.430 (3) | C22—H22B | 0.9600 |
C7—H7 | 0.9300 | C22—H22C | 0.9600 |
C8—C9 | 1.387 (2) | C23—H23A | 0.9600 |
C8—C13 | 1.413 (2) | C23—H23B | 0.9600 |
C9—C10 | 1.380 (3) | C23—H23C | 0.9600 |
O2—Mn1—O1 | 88.57 (6) | C9—C10—N3 | 118.59 (16) |
O2—Mn1—N2 | 94.63 (6) | C11—C10—N3 | 118.96 (16) |
O1—Mn1—N2 | 175.06 (6) | C12—C11—C10 | 118.98 (17) |
O2—Mn1—N1 | 177.72 (6) | C12—C11—H11 | 120.5 |
O1—Mn1—N1 | 93.71 (6) | C10—C11—H11 | 120.5 |
N2—Mn1—N1 | 83.10 (6) | C11—C12—C13 | 120.50 (17) |
O2—Mn1—O1W | 91.93 (6) | C11—C12—H12 | 119.8 |
O1—Mn1—O1W | 86.45 (6) | C13—C12—H12 | 119.8 |
N2—Mn1—O1W | 89.68 (6) | C12—C13—N2 | 125.44 (16) |
N1—Mn1—O1W | 88.22 (6) | C12—C13—C8 | 118.51 (16) |
O2—Mn1—O6i | 92.60 (5) | N2—C13—C8 | 115.98 (15) |
O1—Mn1—O6i | 85.96 (5) | O6—C14—N2 | 122.76 (16) |
N2—Mn1—O6i | 97.63 (6) | O6—C14—C15 | 118.47 (16) |
N1—Mn1—O6i | 87.56 (6) | N2—C14—C15 | 118.77 (15) |
O1W—Mn1—O6i | 171.06 (5) | C16—C15—C20 | 118.88 (16) |
C1—O1—Mn1 | 128.16 (12) | C16—C15—C14 | 115.91 (15) |
C20—O2—Mn1 | 127.29 (11) | C20—C15—C14 | 125.18 (16) |
C7—N1—C8 | 122.21 (15) | C17—C16—C15 | 120.29 (17) |
C7—N1—Mn1 | 124.56 (13) | C17—C16—H16 | 119.9 |
C8—N1—Mn1 | 113.05 (11) | C15—C16—H16 | 119.9 |
C14—N2—C13 | 120.16 (15) | C16—C17—C18 | 121.12 (17) |
C14—N2—Mn1 | 123.06 (12) | C16—C17—Br1 | 120.75 (15) |
C13—N2—Mn1 | 113.00 (11) | C18—C17—Br1 | 118.11 (14) |
O4—N3—O3 | 123.46 (17) | C19—C18—C17 | 119.14 (17) |
O4—N3—C10 | 118.37 (17) | C19—C18—H18 | 120.4 |
O3—N3—C10 | 118.17 (16) | C17—C18—H18 | 120.4 |
O1—C1—C2 | 117.94 (16) | C18—C19—C20 | 121.56 (17) |
O1—C1—C6 | 123.76 (16) | C18—C19—H19 | 119.2 |
C2—C1—C6 | 118.30 (17) | C20—C19—H19 | 119.2 |
C3—C2—C1 | 120.85 (18) | O2—C20—C19 | 116.61 (16) |
C3—C2—H2 | 119.6 | O2—C20—C15 | 124.49 (16) |
C1—C2—H2 | 119.6 | C19—C20—C15 | 118.89 (16) |
C2—C3—C4 | 120.02 (19) | C14—O6—Mn1ii | 116.75 (12) |
C2—C3—H3 | 120.0 | Mn1—O1W—H1W2 | 110 (3) |
C4—C3—H3 | 120.0 | Mn1—O1W—H2W2 | 114 (2) |
C5—C4—C3 | 121.17 (19) | H1W2—O1W—H2W2 | 103 (3) |
C5—C4—Br2 | 119.20 (16) | C21—N4—C22 | 121.24 (18) |
C3—C4—Br2 | 119.63 (16) | C21—N4—C23 | 121.86 (18) |
C4—C5—C6 | 119.77 (18) | C22—N4—C23 | 116.90 (17) |
C4—C5—H5 | 120.1 | O5—C21—N4 | 125.0 (2) |
C6—C5—H5 | 120.1 | O5—C21—H21 | 117.5 |
C5—C6—C1 | 119.88 (17) | N4—C21—H21 | 117.5 |
C5—C6—C7 | 116.01 (16) | N4—C22—H22A | 109.5 |
C1—C6—C7 | 124.10 (17) | N4—C22—H22B | 109.5 |
N1—C7—C6 | 125.38 (17) | H22A—C22—H22B | 109.5 |
N1—C7—H7 | 117.3 | N4—C22—H22C | 109.5 |
C6—C7—H7 | 117.3 | H22A—C22—H22C | 109.5 |
C9—C8—C13 | 121.17 (16) | H22B—C22—H22C | 109.5 |
C9—C8—N1 | 124.31 (16) | N4—C23—H23A | 109.5 |
C13—C8—N1 | 114.51 (15) | N4—C23—H23B | 109.5 |
C10—C9—C8 | 118.35 (17) | H23A—C23—H23B | 109.5 |
C10—C9—H9 | 120.8 | N4—C23—H23C | 109.5 |
C8—C9—H9 | 120.8 | H23A—C23—H23C | 109.5 |
C9—C10—C11 | 122.43 (16) | H23B—C23—H23C | 109.5 |
O2—Mn1—O1—C1 | 175.97 (16) | N1—C8—C9—C10 | 179.15 (17) |
N1—Mn1—O1—C1 | −4.03 (16) | C8—C9—C10—C11 | 1.8 (3) |
O1W—Mn1—O1—C1 | 83.95 (16) | C8—C9—C10—N3 | −176.83 (16) |
O6i—Mn1—O1—C1 | −91.32 (15) | O4—N3—C10—C9 | 173.19 (19) |
O1—Mn1—O2—C20 | −162.27 (15) | O3—N3—C10—C9 | −6.8 (3) |
N2—Mn1—O2—C20 | 13.96 (16) | O4—N3—C10—C11 | −5.5 (3) |
O1W—Mn1—O2—C20 | −75.87 (15) | O3—N3—C10—C11 | 174.50 (18) |
O6i—Mn1—O2—C20 | 111.84 (15) | C9—C10—C11—C12 | −1.8 (3) |
O1—Mn1—N1—C7 | 6.45 (16) | N3—C10—C11—C12 | 176.82 (17) |
N2—Mn1—N1—C7 | −169.77 (16) | C10—C11—C12—C13 | −0.3 (3) |
O1W—Mn1—N1—C7 | −79.88 (15) | C11—C12—C13—N2 | 178.99 (18) |
O6i—Mn1—N1—C7 | 92.24 (15) | C11—C12—C13—C8 | 2.2 (3) |
O1—Mn1—N1—C8 | −178.30 (12) | C14—N2—C13—C12 | 27.2 (3) |
N2—Mn1—N1—C8 | 5.48 (12) | Mn1—N2—C13—C12 | −174.01 (15) |
O1W—Mn1—N1—C8 | 95.38 (12) | C14—N2—C13—C8 | −155.88 (16) |
O6i—Mn1—N1—C8 | −92.51 (12) | Mn1—N2—C13—C8 | 2.9 (2) |
O2—Mn1—N2—C14 | −26.70 (15) | C9—C8—C13—C12 | −2.2 (3) |
N1—Mn1—N2—C14 | 153.46 (15) | N1—C8—C13—C12 | 178.80 (16) |
O1W—Mn1—N2—C14 | 65.22 (14) | C9—C8—C13—N2 | −179.31 (16) |
O6i—Mn1—N2—C14 | −119.95 (14) | N1—C8—C13—N2 | 1.7 (2) |
O2—Mn1—N2—C13 | 175.27 (12) | C13—N2—C14—O6 | 7.6 (3) |
N1—Mn1—N2—C13 | −4.57 (12) | Mn1—N2—C14—O6 | −148.89 (15) |
O1W—Mn1—N2—C13 | −92.82 (13) | C13—N2—C14—C15 | −172.84 (16) |
O6i—Mn1—N2—C13 | 82.02 (12) | Mn1—N2—C14—C15 | 30.6 (2) |
Mn1—O1—C1—C2 | −179.45 (14) | O6—C14—C15—C16 | −16.2 (3) |
Mn1—O1—C1—C6 | 0.9 (3) | N2—C14—C15—C16 | 164.22 (16) |
O1—C1—C2—C3 | −179.07 (19) | O6—C14—C15—C20 | 162.02 (18) |
C6—C1—C2—C3 | 0.6 (3) | N2—C14—C15—C20 | −17.5 (3) |
C1—C2—C3—C4 | −0.9 (3) | C20—C15—C16—C17 | 0.1 (3) |
C2—C3—C4—C5 | 0.3 (4) | C14—C15—C16—C17 | 178.44 (17) |
C2—C3—C4—Br2 | 179.33 (17) | C15—C16—C17—C18 | −2.4 (3) |
C3—C4—C5—C6 | 0.7 (3) | C15—C16—C17—Br1 | 179.05 (14) |
Br2—C4—C5—C6 | −178.36 (16) | C16—C17—C18—C19 | 1.7 (3) |
C4—C5—C6—C1 | −1.0 (3) | Br1—C17—C18—C19 | −179.70 (15) |
C4—C5—C6—C7 | 177.4 (2) | C17—C18—C19—C20 | 1.3 (3) |
O1—C1—C6—C5 | −179.99 (18) | Mn1—O2—C20—C19 | 173.51 (13) |
C2—C1—C6—C5 | 0.4 (3) | Mn1—O2—C20—C15 | −5.8 (3) |
O1—C1—C6—C7 | 1.8 (3) | C18—C19—C20—O2 | 177.07 (17) |
C2—C1—C6—C7 | −177.89 (18) | C18—C19—C20—C15 | −3.6 (3) |
C8—N1—C7—C6 | 179.15 (17) | C16—C15—C20—O2 | −177.88 (17) |
Mn1—N1—C7—C6 | −6.0 (3) | C14—C15—C20—O2 | 3.9 (3) |
C5—C6—C7—N1 | −177.16 (19) | C16—C15—C20—C19 | 2.8 (3) |
C1—C6—C7—N1 | 1.2 (3) | C14—C15—C20—C19 | −175.36 (17) |
C7—N1—C8—C9 | −9.0 (3) | N2—C14—O6—Mn1ii | 83.77 (19) |
Mn1—N1—C8—C9 | 175.61 (14) | C15—C14—O6—Mn1ii | −95.75 (17) |
C7—N1—C8—C13 | 169.94 (17) | C22—N4—C21—O5 | −1.6 (3) |
Mn1—N1—C8—C13 | −5.44 (19) | C23—N4—C21—O5 | 178.2 (2) |
C13—C8—C9—C10 | 0.3 (3) |
Symmetry codes: (i) x, −y+1/2, z−1/2; (ii) x, −y+1/2, z+1/2. |
D—H···A | D—H | H···A | D···A | D—H···A |
O1W—H1W2···O5iii | 0.73 (4) | 2.03 (4) | 2.736 (2) | 163 (4) |
O1W—H2W2···O1ii | 0.77 (3) | 2.55 (3) | 3.178 (2) | 140 (3) |
O1W—H2W2···O2ii | 0.77 (3) | 2.19 (3) | 2.890 (2) | 153 (3) |
C2—H2···O5iv | 0.93 | 2.42 | 3.351 (2) | 175 |
C5—H5···O4v | 0.93 | 2.49 | 3.395 (3) | 166 |
C7—H7···O3v | 0.93 | 2.60 | 3.509 (2) | 167 |
C18—H18···Br2vi | 0.93 | 2.83 | 3.449 (2) | 125 |
C23—H23A···O5i | 0.96 | 2.40 | 3.350 (3) | 170 |
Symmetry codes: (i) x, −y+1/2, z−1/2; (ii) x, −y+1/2, z+1/2; (iii) x−1, −y+1/2, z−1/2; (iv) x−1, y, z−1; (v) −x+1, −y+1, −z+3; (vi) −x, y−1/2, −z+3/2. |
Experimental details
Crystal data | |
Chemical formula | [Mn(C20H10Br2N3O5)(H2O)]·C3H7NO |
Mr | 678.18 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 100 |
a, b, c (Å) | 11.0746 (6), 24.9781 (13), 9.5563 (5) |
β (°) | 114.658 (1) |
V (Å3) | 2402.4 (2) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 3.93 |
Crystal size (mm) | 0.52 × 0.17 × 0.11 |
Data collection | |
Diffractometer | Bruker APEXII DUO CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2009) |
Tmin, Tmax | 0.234, 0.672 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 27005, 8188, 6617 |
Rint | 0.032 |
(sin θ/λ)max (Å−1) | 0.742 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.034, 0.085, 1.02 |
No. of reflections | 8188 |
No. of parameters | 344 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 1.85, −0.62 |
Computer programs: APEX2 (Bruker, 2009), SAINT (Bruker, 2009), SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
O1W—H1W2···O5i | 0.73 (4) | 2.03 (4) | 2.736 (2) | 163 (4) |
O1W—H2W2···O1ii | 0.77 (3) | 2.55 (3) | 3.178 (2) | 140 (3) |
O1W—H2W2···O2ii | 0.77 (3) | 2.19 (3) | 2.890 (2) | 153 (3) |
C2—H2···O5iii | 0.93 | 2.42 | 3.351 (2) | 175 |
C5—H5···O4iv | 0.93 | 2.49 | 3.395 (3) | 166 |
C7—H7···O3iv | 0.93 | 2.60 | 3.509 (2) | 167 |
C18—H18···Br2v | 0.93 | 2.83 | 3.449 (2) | 125 |
C23—H23A···O5vi | 0.96 | 2.40 | 3.350 (3) | 170 |
Symmetry codes: (i) x−1, −y+1/2, z−1/2; (ii) x, −y+1/2, z+1/2; (iii) x−1, y, z−1; (iv) −x+1, −y+1, −z+3; (v) −x, y−1/2, −z+3/2; (vi) x, −y+1/2, z−1/2. |
Footnotes
‡Thomson Reuters ResearcherID: A-3561-2009.
Acknowledgements
AMF, TSG and HO thank the Malaysian Government and Universiti Sains Malaysia (USM) for the RU research grant (1001/PKIMIA/815002). AMF thanks Naser Taha and Hema for their help. HKF and MH thanks the Malaysian Government and USM for the Research University Grant No. 1001/PFIZIK/811160. MH also thanks USM for a post-doctoral research fellowship.
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
In recent years, the coordination chemistry of manganese has been intensively studied due to its presence in the active sites of some enzymes that participate in the chemistry of reactive oxygen species, such as the participation of Mn(II) complexes in peroxidase activity (Maneiro et al., 2003), antipathogenic activity (Chandra et al., 2009) and as essential cofactors in metalloenzymes (Chrisianson & Cox, 1999). X-Ray crystallography has shown a quasi- two-coordinate strongly bent geometry with Mn, which has an almost linear geometry with a wide N—Mn—N angle of 176.1° (Ni et al., 2009). Octahedral coordination is completed by N4O2 ligands (Zhang et al., 2005). The reaction system (solvent composition and reaction temperature) may cause dramatic changes in the structures. The preparation of the polymer results in the introduction of guest molecules such as DMF into its empty channels by the use of mixed solvents DMF-EtOH-H2O under hydro(solvo)thermal conditions (Huh & Lee, 2008). The mechanism of oxidation by DMF have been proposed by Pastoriza-Santos & Liz-Marzań (2009). Due to these interesting features, the title compound was synthesized and its crystal structure presented here.
The asymmetric unit of the title polymeric complex, consisting of one Mn (III) ion, one (E)-5-bromo-N-(2- (5-bromo-2-hydroxybenzylideneamino)-4-nitrophenyl)-2-hydroxybenzamide (Schiff base), one water molecule and a dimethylformamide solvate molecule is shown in Fig. 1. The coordination geometry around Mn (III) is a distorted octahedron, with the Mn (III) ion being surrounded by two O and two N atoms from the Schiff base which are positioned in the equatorial plane. The water molecule and an atom from a carbonyl group are situated in the axial positions. The carbonyl groups bridge the Mn (III) ions, leading to polymeric chains along the c-axis (Fig. 2). The bond lengths are Mn1—O2 = 1.8557 (13); Mn1—O1 = 1.8875 (13); Mn1—N2 = 1.9750 (15); Mn1—N1 = 1.9782 (15); Mn1—O1W =2.2431(15; Mn1—O6 = 2.3448 (14) Å. All bond lengths are in agreement with those in the related structures (Su & Xu, 2005; Ma et al., 2004). In the crystal, (Fig. 3), the complexes are connected with the solvent molecules via O—H···O, C—H···O and C—H···Br hydrogen bonds (Table 1) to form a three-dimensional network.