organic compounds
2-[(E)-(1,10-Phenanthrolin-5-yl)iminomethyl]phenol methanol monosolvate
aInorganic Chemistry Department, Howard University, Washington, DC 20059, USA, bDepartment of Physics, Faculty of Sciences, Erciyes University, 38039 Kayseri, Turkey, cYíldíz Technical University, Faculty of Arts and Sciences, Chemistry Department, 34210 Esenler, Istanbul, Turkey, and dDepartment of Chemistry, Howard University, 525 College Street NW, Washington, DC 20059, USA
*Correspondence e-mail: rbutcher99@yahoo.com
In the title multi-donor Schiff base compound, C19H13N3O·CH3OH, the dihedral angle between the mean planes of the phenanthroline and phenol rings is 59.3 (1)°. The Schiff base molecule is linked to the solvent molecule by an O—H⋯O hydrogen bond. In the crystal, the components are linked by O—H⋯N hydrogen bonds, weak O—H⋯N interactions and π–π stacking interactions [centroid–centroid distances = 3.701 (1) and 3.656 (1) Å].
Related literature
For the role played by 1,10-phenanthroline and its derivatives as molecular scaffolds for supramolecular assemblies, see: Balzani et al. (1996). For the metal-chelating properties of the 1,10-phenanthroline ligand, see: Sammes & Yahioglu (1994). For the photochemical and redox properties of phenanthroline rings, see: Camren et al. (1996); Bolger et al. (1996); Msood & Hodgson (1993). For as oxygen-carriers and as photochromic or thermochromic materials, see: Hobday & Smith (1973); Gul et al. (1986); Can & Bekaroglu (1988); Avciata et al. (1995, 1998); Demirhan et al. (2002). For the synthesis of 5-amino-1,10-phenanthroline, see: Gillard & Hill (1974). For related structures, see: Wu et al. (2011); Fun et al. (2010). For standard bond lengths, see: Allen et al. (1987).
Experimental
Crystal data
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Data collection
Refinement
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Data collection: CrysAlis PRO (Oxford Diffraction, 2007); cell CrysAlis PRO; data reduction: CrysAlis RED (Oxford Diffraction, 2007); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.
Supporting information
10.1107/S1600536812011890/jj2127sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536812011890/jj2127Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536812011890/jj2127Isup3.cml
5-Amino-1,10-phenanthroline (Gillard & Hill, 1974) (1.5 g, 7.69 mmol) in 50 ml absolute methanol was added to salicylaldehyde (0.93 g, 7.69 mmol) dissolved in 20 ml diethylether and 100 ml absolute ethanol. After refluxing this mixture for 4.5 h, the precipitate was filtered off and then washed with water and ether. The product was obtained as a yellow precipitate (70° yield). It was soluble in methanol, ethanol and chloroform. Yield 1.79 g (78%). m.p. 451–453 K; Anal. Calcd. for C19H13N3O.CH3OH (299.32 g/mol) C, 74.24; H, 4.38; N, 14.04. Found: C, 74.86; H, 4.12; N, 14.66.
H atoms were placed in geometrically idealized positions and constrained to ride on their parent atoms with O—H = 0.84 Å, C—H = 0.95–0.98 Å and Uiso(H) = 1.2Ueq(C) or Uiso(H) = 1.5 Ueq(CH3 and O).
1,10-Phenanthroline and its derivatives play important roles as molecular scaffolding for supramolecular assemblies (Balzani et al., 1996). These have played a major role in the development of polypyridyl metal complexes. The metal chelating property of the 1,10-phenanthroline ligand and its derivatives have been utilized in a range of analytical reagents as well as for the development of bioinorganic probes (Sammes & Yahioglu, 1994). The photochemical and redox properties of complexes can be varied systematically through appropriate substitution on the phenanthroline rings (Camren et al., 1996: Bolger et al., 1996: Msood & Hodgson, 1993).
The coordination chemistry of
derived from salicylaldehyde has been the subject of many studies because of their interesting properties; e.g. as oxygen-carriers to mimic some complicated biological systems, as photochromic or thermochromic materials (Hobday & Smith, 1973: Gul et al., 1986: Can & Bekaroglu, 1988: Avciata et al. 1995; Avciata et al. 1998; Demirhan et al. 2002).We report here the synthesis and characterization a new multidonor Schiff base derivative, (I), carrying N3O donor atoms and prepared from the condensation reaction of 5-amino-1,10-phenanthroline with salicylaldehyde.
The title molecule C19H13N3O.CH3OH, crystallized as a methanol monosolvate (Fig. 1). All bond lengths are as expected (Allen et al., 1987) and are comparable to those observed in related structures (Wu et al., 2011; Fun et al., 2010). The molecule is not planar, forming a dihedral angle of 59.3 (1)° between the mean planes of the phenanthroline (N1/N2/C1—C12) and phenol (C14—C19) rings.
In the crystal, O—H···N hydrogen bonds and weak O—H···N intermolecular interactions are observed (Table 1) as well as weak π-π stacking interactions [Cg1···Cg2 (x, 1+y, z) = 3.701 (1) Å and Cg1···Cg3 (x, 1+y,z) = 3.656 (1) Å, where Cg1(N1/C1—C4/C12), Cg2(N2/C7—C11) and Cg3(C4—C7/C11—C12) are the centroids of the phenonthroline ring], (Fig. 2).
For the role played by 1,10-phenanthroline and its derivatives as molecular scaffolds for supramolecular assemblies, see: Balzani et al. (1996). For the metal-chelating properties of the 1,10-phenanthroline ligand, see: Sammes & Yahioglu (1994). For the photochemical and redox properties of phenanthroline rings, see: Camren et al. (1996); Bolger et al. (1996); Msood & Hodgson (1993). For
as oxygen-carriers and as photochromic or thermochromic materials, see: Hobday & Smith (1973); Gul et al. (1986); Can & Bekaroglu (1988); Avciata et al. (1995, 1998); Demirhan et al. (2002). For the synthesis of 5-amino-1,10-phenanthroline, see: Gillard & Hill (1974). For related structures, see: Wu et al. (2011); Fun et al. (2010). For standard bond lengths, see: Allen et al. (1987).Data collection: CrysAlis PRO (Oxford Diffraction, 2007); cell
CrysAlis PRO (Oxford Diffraction, 2007); data reduction: CrysAlis RED (Oxford Diffraction, 2007); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).C19H13N3O·CH4O | F(000) = 348 |
Mr = 331.37 | Dx = 1.365 Mg m−3 |
Monoclinic, Pc | Cu Kα radiation, λ = 1.54184 Å |
Hall symbol: P -2yc | Cell parameters from 1347 reflections |
a = 11.9398 (12) Å | θ = 3.1–75.2° |
b = 4.6680 (5) Å | µ = 0.73 mm−1 |
c = 14.7818 (18) Å | T = 123 K |
β = 101.961 (11)° | Triangular plate, yellow |
V = 805.98 (16) Å3 | 1.15 × 0.84 × 0.06 mm |
Z = 2 |
Oxford Diffraction Gemini-R diffractometer | 1960 independent reflections |
Radiation source: Enhance (Cu) X-ray Source | 1885 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.030 |
Detector resolution: 10.5081 pixels mm-1 | θmax = 75.2°, θmin = 3.1° |
ω scans | h = −13→14 |
Absorption correction: analytical [CrysAlis RED (Oxford Diffraction, 2007), using a multi-faceted crystal model (Clark & Reid, 1995)] | k = −5→5 |
Tmin = 0.505, Tmax = 0.954 | l = −18→12 |
3176 measured reflections |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.039 | H-atom parameters constrained |
wR(F2) = 0.110 | w = 1/[σ2(Fo2) + (0.0747P)2 + 0.0897P] where P = (Fo2 + 2Fc2)/3 |
S = 1.04 | (Δ/σ)max < 0.001 |
1960 reflections | Δρmax = 0.24 e Å−3 |
229 parameters | Δρmin = −0.17 e Å−3 |
2 restraints | Absolute structure: Flack, H. D. (1983). Acta Cryst. A39, 876–881, 303 Friedel pairs |
Primary atom site location: structure-invariant direct methods | Absolute structure parameter: −1.5 (18) |
C19H13N3O·CH4O | V = 805.98 (16) Å3 |
Mr = 331.37 | Z = 2 |
Monoclinic, Pc | Cu Kα radiation |
a = 11.9398 (12) Å | µ = 0.73 mm−1 |
b = 4.6680 (5) Å | T = 123 K |
c = 14.7818 (18) Å | 1.15 × 0.84 × 0.06 mm |
β = 101.961 (11)° |
Oxford Diffraction Gemini-R diffractometer | 1960 independent reflections |
Absorption correction: analytical [CrysAlis RED (Oxford Diffraction, 2007), using a multi-faceted crystal model (Clark & Reid, 1995)] | 1885 reflections with I > 2σ(I) |
Tmin = 0.505, Tmax = 0.954 | Rint = 0.030 |
3176 measured reflections |
R[F2 > 2σ(F2)] = 0.039 | H-atom parameters constrained |
wR(F2) = 0.110 | Δρmax = 0.24 e Å−3 |
S = 1.04 | Δρmin = −0.17 e Å−3 |
1960 reflections | Absolute structure: Flack, H. D. (1983). Acta Cryst. A39, 876–881, 303 Friedel pairs |
229 parameters | Absolute structure parameter: −1.5 (18) |
2 restraints |
Experimental. The crystal was very fragile. On cutting the crystal shattered so an incident collimator of 1.0 mm was used. IR (KBr): 3435(Ar—OH), 3020(Ar), 1616 (C=N—C). 13 C NMR, 167 (C—OH), 165 (C=C—N), 150,152 and 148 (C=N) p.p.m.. LC—MS, m/z (%): 298 (M-1). In the electronic spectrum two band appears at 281 and 340 nm which can be assigned to the π -π * and n-π * transition of C=C and C=N group. The FTIR spectra were obtained on a Perkin Elmer Spectrum One Bv 5.0 spectrophotometer. 1H NMR and 13C NMR spectra were recorded on a Varian UNITY INOVA 500 MHz s pectrometer. Mass spectra were measured on a FinniganTM LCQTM Advantage MAX spectrometer. Electronic spectra were obtained on a Agilent 8453 UV-Vis. Spectroscopy System. Elemental analyses were obtained on a Thermo Finnigan Flash EA 112. All other chemicals employed were of the highest grade available. Absorption correction: CrysAlis RED, (Oxford Diffraction, 2007) Analytical numeric absorption correction using a multifaceted crystal model (Clark & Reid, 1995). |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.98484 (16) | 1.4695 (5) | 0.63127 (14) | 0.0337 (4) | |
H1 | 1.0514 | 1.5260 | 0.6545 | 0.051* | |
O1S | 1.18635 (15) | 1.6610 (4) | 0.71862 (14) | 0.0307 (4) | |
H1S | 1.2497 | 1.6321 | 0.7038 | 0.046* | |
N1 | 0.41348 (18) | 0.5215 (5) | 0.70687 (15) | 0.0254 (4) | |
N2 | 0.32594 (18) | 0.8980 (5) | 0.56783 (15) | 0.0268 (4) | |
N3 | 0.70428 (17) | 1.0456 (5) | 0.50248 (15) | 0.0256 (4) | |
C1 | 0.4567 (2) | 0.3337 (6) | 0.77219 (17) | 0.0275 (5) | |
H1A | 0.4061 | 0.2468 | 0.8058 | 0.033* | |
C2 | 0.5729 (2) | 0.2556 (6) | 0.79469 (18) | 0.0291 (5) | |
H2A | 0.5997 | 0.1206 | 0.8424 | 0.035* | |
C3 | 0.6463 (2) | 0.3780 (5) | 0.74647 (18) | 0.0265 (5) | |
H3A | 0.7252 | 0.3282 | 0.7600 | 0.032* | |
C4 | 0.60430 (19) | 0.5796 (5) | 0.67619 (16) | 0.0233 (5) | |
C5 | 0.6784 (2) | 0.7166 (5) | 0.62454 (17) | 0.0237 (5) | |
H5A | 0.7577 | 0.6711 | 0.6372 | 0.028* | |
C6 | 0.63612 (19) | 0.9123 (5) | 0.55719 (16) | 0.0234 (5) | |
C7 | 0.5151 (2) | 0.9788 (5) | 0.53588 (16) | 0.0227 (5) | |
C8 | 0.4682 (2) | 1.1790 (6) | 0.46665 (17) | 0.0258 (5) | |
H8A | 0.5159 | 1.2761 | 0.4326 | 0.031* | |
C9 | 0.3527 (2) | 1.2309 (6) | 0.44944 (19) | 0.0299 (5) | |
H9A | 0.3191 | 1.3639 | 0.4030 | 0.036* | |
C10 | 0.2852 (2) | 1.0854 (6) | 0.50113 (19) | 0.0297 (5) | |
H10A | 0.2052 | 1.1223 | 0.4879 | 0.036* | |
C11 | 0.4404 (2) | 0.8465 (5) | 0.58528 (16) | 0.0233 (5) | |
C12 | 0.48604 (19) | 0.6424 (5) | 0.65842 (16) | 0.0221 (5) | |
C13 | 0.8014 (2) | 1.1466 (6) | 0.54239 (17) | 0.0252 (5) | |
H13A | 0.8229 | 1.1375 | 0.6079 | 0.030* | |
C14 | 0.8805 (2) | 1.2756 (5) | 0.49080 (18) | 0.0258 (5) | |
C15 | 0.9738 (2) | 1.4372 (5) | 0.53890 (18) | 0.0268 (5) | |
C16 | 1.0503 (2) | 1.5581 (6) | 0.4904 (2) | 0.0311 (5) | |
H16A | 1.1138 | 1.6655 | 0.5226 | 0.037* | |
C17 | 1.0351 (2) | 1.5235 (6) | 0.3963 (2) | 0.0358 (6) | |
H17A | 1.0878 | 1.6080 | 0.3641 | 0.043* | |
C18 | 0.9425 (2) | 1.3650 (8) | 0.3476 (2) | 0.0382 (6) | |
H18A | 0.9323 | 1.3405 | 0.2826 | 0.046* | |
C19 | 0.8661 (2) | 1.2446 (6) | 0.39525 (18) | 0.0305 (5) | |
H19A | 0.8027 | 1.1387 | 0.3623 | 0.037* | |
C1S | 1.1695 (2) | 1.9603 (6) | 0.7274 (2) | 0.0368 (6) | |
H1S1 | 1.2045 | 2.0217 | 0.7903 | 0.055* | |
H1S2 | 1.0873 | 2.0020 | 0.7150 | 0.055* | |
H1S3 | 1.2051 | 2.0636 | 0.6829 | 0.055* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0270 (8) | 0.0449 (11) | 0.0295 (9) | −0.0100 (8) | 0.0067 (7) | −0.0060 (8) |
O1S | 0.0226 (8) | 0.0333 (9) | 0.0364 (10) | −0.0025 (7) | 0.0064 (7) | −0.0027 (8) |
N1 | 0.0220 (9) | 0.0255 (10) | 0.0282 (10) | −0.0003 (8) | 0.0040 (8) | −0.0010 (9) |
N2 | 0.0228 (9) | 0.0262 (10) | 0.0310 (11) | 0.0006 (8) | 0.0047 (8) | 0.0015 (8) |
N3 | 0.0223 (10) | 0.0280 (10) | 0.0269 (10) | −0.0002 (8) | 0.0061 (8) | −0.0011 (8) |
C1 | 0.0298 (12) | 0.0264 (12) | 0.0271 (12) | −0.0032 (10) | 0.0081 (10) | 0.0005 (10) |
C2 | 0.0306 (12) | 0.0284 (12) | 0.0262 (12) | −0.0009 (10) | 0.0011 (9) | 0.0011 (9) |
C3 | 0.0243 (11) | 0.0253 (11) | 0.0277 (12) | 0.0021 (9) | 0.0002 (9) | −0.0014 (10) |
C4 | 0.0227 (12) | 0.0209 (10) | 0.0255 (12) | −0.0011 (9) | 0.0029 (9) | −0.0024 (9) |
C5 | 0.0203 (10) | 0.0243 (11) | 0.0260 (11) | 0.0004 (9) | 0.0035 (8) | −0.0032 (9) |
C6 | 0.0236 (11) | 0.0220 (10) | 0.0244 (11) | −0.0013 (9) | 0.0044 (9) | −0.0041 (9) |
C7 | 0.0227 (10) | 0.0212 (10) | 0.0233 (11) | −0.0013 (8) | 0.0025 (9) | −0.0029 (9) |
C8 | 0.0286 (12) | 0.0246 (11) | 0.0242 (11) | −0.0008 (9) | 0.0053 (9) | −0.0010 (9) |
C9 | 0.0309 (13) | 0.0298 (11) | 0.0272 (11) | 0.0032 (10) | 0.0022 (10) | 0.0041 (10) |
C10 | 0.0225 (12) | 0.0290 (12) | 0.0363 (13) | 0.0035 (9) | 0.0032 (10) | 0.0019 (11) |
C11 | 0.0221 (11) | 0.0217 (10) | 0.0250 (11) | −0.0013 (8) | 0.0024 (9) | −0.0033 (9) |
C12 | 0.0206 (10) | 0.0206 (11) | 0.0246 (11) | −0.0011 (8) | 0.0034 (9) | −0.0023 (9) |
C13 | 0.0241 (11) | 0.0259 (11) | 0.0257 (11) | 0.0017 (9) | 0.0057 (8) | 0.0000 (9) |
C14 | 0.0214 (10) | 0.0268 (11) | 0.0294 (12) | 0.0020 (9) | 0.0056 (9) | 0.0022 (10) |
C15 | 0.0222 (10) | 0.0275 (11) | 0.0308 (12) | 0.0021 (9) | 0.0056 (9) | 0.0002 (10) |
C16 | 0.0215 (11) | 0.0326 (13) | 0.0397 (14) | −0.0031 (10) | 0.0072 (10) | 0.0021 (11) |
C17 | 0.0248 (11) | 0.0432 (14) | 0.0417 (15) | 0.0030 (11) | 0.0123 (10) | 0.0150 (12) |
C18 | 0.0313 (13) | 0.0560 (18) | 0.0273 (12) | 0.0040 (12) | 0.0061 (10) | 0.0063 (12) |
C19 | 0.0228 (11) | 0.0403 (14) | 0.0279 (12) | −0.0011 (10) | 0.0039 (9) | 0.0007 (11) |
C1S | 0.0318 (13) | 0.0350 (14) | 0.0451 (16) | −0.0016 (11) | 0.0115 (11) | −0.0054 (12) |
O1—C15 | 1.353 (3) | C7—C8 | 1.413 (3) |
O1—H1 | 0.8400 | C8—C9 | 1.371 (4) |
O1S—C1S | 1.421 (3) | C8—H8A | 0.9500 |
O1S—H1S | 0.8400 | C9—C10 | 1.396 (4) |
N1—C1 | 1.327 (3) | C9—H9A | 0.9500 |
N1—C12 | 1.356 (3) | C10—H10A | 0.9500 |
N2—C10 | 1.333 (3) | C11—C12 | 1.459 (3) |
N2—C11 | 1.359 (3) | C13—C14 | 1.462 (3) |
N3—C13 | 1.277 (3) | C13—H13A | 0.9500 |
N3—C6 | 1.406 (3) | C14—C19 | 1.395 (4) |
C1—C2 | 1.406 (4) | C14—C15 | 1.410 (3) |
C1—H1A | 0.9500 | C15—C16 | 1.393 (3) |
C2—C3 | 1.365 (4) | C16—C17 | 1.374 (4) |
C2—H2A | 0.9500 | C16—H16A | 0.9500 |
C3—C4 | 1.414 (4) | C17—C18 | 1.399 (4) |
C3—H3A | 0.9500 | C17—H17A | 0.9500 |
C4—C12 | 1.412 (3) | C18—C19 | 1.382 (4) |
C4—C5 | 1.434 (3) | C18—H18A | 0.9500 |
C5—C6 | 1.368 (3) | C19—H19A | 0.9500 |
C5—H5A | 0.9500 | C1S—H1S1 | 0.9800 |
C6—C7 | 1.447 (3) | C1S—H1S2 | 0.9800 |
C7—C11 | 1.407 (3) | C1S—H1S3 | 0.9800 |
C15—O1—H1 | 109.5 | C9—C10—H10A | 118.0 |
C1S—O1S—H1S | 109.5 | N2—C11—C7 | 123.0 (2) |
C1—N1—C12 | 117.7 (2) | N2—C11—C12 | 117.5 (2) |
C10—N2—C11 | 117.1 (2) | C7—C11—C12 | 119.5 (2) |
C13—N3—C6 | 118.4 (2) | N1—C12—C4 | 122.6 (2) |
N1—C1—C2 | 124.0 (2) | N1—C12—C11 | 118.80 (19) |
N1—C1—H1A | 118.0 | C4—C12—C11 | 118.6 (2) |
C2—C1—H1A | 118.0 | N3—C13—C14 | 122.3 (2) |
C3—C2—C1 | 118.5 (2) | N3—C13—H13A | 118.9 |
C3—C2—H2A | 120.8 | C14—C13—H13A | 118.9 |
C1—C2—H2A | 120.8 | C19—C14—C15 | 119.0 (2) |
C2—C3—C4 | 119.6 (2) | C19—C14—C13 | 121.9 (2) |
C2—C3—H3A | 120.2 | C15—C14—C13 | 119.1 (2) |
C4—C3—H3A | 120.2 | O1—C15—C16 | 122.5 (2) |
C12—C4—C3 | 117.6 (2) | O1—C15—C14 | 118.0 (2) |
C12—C4—C5 | 120.8 (2) | C16—C15—C14 | 119.4 (2) |
C3—C4—C5 | 121.6 (2) | C17—C16—C15 | 120.7 (2) |
C6—C5—C4 | 120.6 (2) | C17—C16—H16A | 119.7 |
C6—C5—H5A | 119.7 | C15—C16—H16A | 119.7 |
C4—C5—H5A | 119.7 | C16—C17—C18 | 120.5 (3) |
C5—C6—N3 | 122.9 (2) | C16—C17—H17A | 119.7 |
C5—C6—C7 | 120.2 (2) | C18—C17—H17A | 119.7 |
N3—C6—C7 | 116.8 (2) | C19—C18—C17 | 119.2 (3) |
C11—C7—C8 | 117.9 (2) | C19—C18—H18A | 120.4 |
C11—C7—C6 | 120.3 (2) | C17—C18—H18A | 120.4 |
C8—C7—C6 | 121.8 (2) | C18—C19—C14 | 121.2 (2) |
C9—C8—C7 | 118.9 (2) | C18—C19—H19A | 119.4 |
C9—C8—H8A | 120.5 | C14—C19—H19A | 119.4 |
C7—C8—H8A | 120.5 | O1S—C1S—H1S1 | 109.5 |
C8—C9—C10 | 119.0 (2) | O1S—C1S—H1S2 | 109.5 |
C8—C9—H9A | 120.5 | H1S1—C1S—H1S2 | 109.5 |
C10—C9—H9A | 120.5 | O1S—C1S—H1S3 | 109.5 |
N2—C10—C9 | 124.1 (2) | H1S1—C1S—H1S3 | 109.5 |
N2—C10—H10A | 118.0 | H1S2—C1S—H1S3 | 109.5 |
C12—N1—C1—C2 | 0.7 (4) | C6—C7—C11—C12 | 0.2 (3) |
N1—C1—C2—C3 | −0.4 (4) | C1—N1—C12—C4 | −1.2 (3) |
C1—C2—C3—C4 | 0.4 (4) | C1—N1—C12—C11 | 179.1 (2) |
C2—C3—C4—C12 | −0.8 (3) | C3—C4—C12—N1 | 1.2 (3) |
C2—C3—C4—C5 | 179.2 (2) | C5—C4—C12—N1 | −178.7 (2) |
C12—C4—C5—C6 | 0.3 (3) | C3—C4—C12—C11 | −179.1 (2) |
C3—C4—C5—C6 | −179.6 (2) | C5—C4—C12—C11 | 1.0 (3) |
C4—C5—C6—N3 | −177.8 (2) | N2—C11—C12—N1 | −2.0 (3) |
C4—C5—C6—C7 | −1.3 (3) | C7—C11—C12—N1 | 178.5 (2) |
C13—N3—C6—C5 | −46.2 (3) | N2—C11—C12—C4 | 178.3 (2) |
C13—N3—C6—C7 | 137.3 (2) | C7—C11—C12—C4 | −1.2 (3) |
C5—C6—C7—C11 | 1.1 (3) | C6—N3—C13—C14 | 176.8 (2) |
N3—C6—C7—C11 | 177.8 (2) | N3—C13—C14—C19 | −13.4 (4) |
C5—C6—C7—C8 | −179.8 (2) | N3—C13—C14—C15 | 166.3 (2) |
N3—C6—C7—C8 | −3.1 (3) | C19—C14—C15—O1 | 178.7 (2) |
C11—C7—C8—C9 | −1.3 (3) | C13—C14—C15—O1 | −1.0 (3) |
C6—C7—C8—C9 | 179.6 (2) | C19—C14—C15—C16 | −1.0 (3) |
C7—C8—C9—C10 | 0.3 (4) | C13—C14—C15—C16 | 179.3 (2) |
C11—N2—C10—C9 | −0.4 (4) | O1—C15—C16—C17 | −179.1 (2) |
C8—C9—C10—N2 | 0.6 (4) | C14—C15—C16—C17 | 0.7 (4) |
C10—N2—C11—C7 | −0.7 (3) | C15—C16—C17—C18 | −0.3 (4) |
C10—N2—C11—C12 | 179.8 (2) | C16—C17—C18—C19 | 0.3 (4) |
C8—C7—C11—N2 | 1.6 (3) | C17—C18—C19—C14 | −0.7 (4) |
C6—C7—C11—N2 | −179.3 (2) | C15—C14—C19—C18 | 1.1 (4) |
C8—C7—C11—C12 | −178.9 (2) | C13—C14—C19—C18 | −179.2 (3) |
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1···O1S | 0.84 | 1.81 | 2.640 (3) | 172 |
O1S—H1S···N1i | 0.84 | 2.01 | 2.829 (3) | 163 |
O1S—H1S···N2i | 0.84 | 2.68 | 3.242 (3) | 126 |
Symmetry code: (i) x+1, y+1, z. |
Experimental details
Crystal data | |
Chemical formula | C19H13N3O·CH4O |
Mr | 331.37 |
Crystal system, space group | Monoclinic, Pc |
Temperature (K) | 123 |
a, b, c (Å) | 11.9398 (12), 4.6680 (5), 14.7818 (18) |
β (°) | 101.961 (11) |
V (Å3) | 805.98 (16) |
Z | 2 |
Radiation type | Cu Kα |
µ (mm−1) | 0.73 |
Crystal size (mm) | 1.15 × 0.84 × 0.06 |
Data collection | |
Diffractometer | Oxford Diffraction Gemini-R |
Absorption correction | Analytical [CrysAlis RED (Oxford Diffraction, 2007), using a multi-faceted crystal model (Clark & Reid, 1995)] |
Tmin, Tmax | 0.505, 0.954 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 3176, 1960, 1885 |
Rint | 0.030 |
(sin θ/λ)max (Å−1) | 0.627 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.039, 0.110, 1.04 |
No. of reflections | 1960 |
No. of parameters | 229 |
No. of restraints | 2 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.24, −0.17 |
Absolute structure | Flack, H. D. (1983). Acta Cryst. A39, 876–881, 303 Friedel pairs |
Absolute structure parameter | −1.5 (18) |
Computer programs: CrysAlis PRO (Oxford Diffraction, 2007), CrysAlis RED (Oxford Diffraction, 2007), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1···O1S | 0.84 | 1.81 | 2.640 (3) | 171.8 |
O1S—H1S···N1i | 0.84 | 2.01 | 2.829 (3) | 163.2 |
O1S—H1S···N2i | 0.84 | 2.68 | 3.242 (3) | 125.8 |
Symmetry code: (i) x+1, y+1, z. |
Acknowledgements
RJB acknowledges the NSF–MRI program (grant No. CHE-0619278) for funds to purchase the diffractometer.
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
1,10-Phenanthroline and its derivatives play important roles as molecular scaffolding for supramolecular assemblies (Balzani et al., 1996). These have played a major role in the development of polypyridyl metal complexes. The metal chelating property of the 1,10-phenanthroline ligand and its derivatives have been utilized in a range of analytical reagents as well as for the development of bioinorganic probes (Sammes & Yahioglu, 1994). The photochemical and redox properties of complexes can be varied systematically through appropriate substitution on the phenanthroline rings (Camren et al., 1996: Bolger et al., 1996: Msood & Hodgson, 1993).
The coordination chemistry of Schiff bases derived from salicylaldehyde has been the subject of many studies because of their interesting properties; e.g. as oxygen-carriers to mimic some complicated biological systems, as photochromic or thermochromic materials (Hobday & Smith, 1973: Gul et al., 1986: Can & Bekaroglu, 1988: Avciata et al. 1995; Avciata et al. 1998; Demirhan et al. 2002).
We report here the synthesis and characterization a new multidonor Schiff base derivative, (I), carrying N3O donor atoms and prepared from the condensation reaction of 5-amino-1,10-phenanthroline with salicylaldehyde.
The title molecule C19H13N3O.CH3OH, crystallized as a methanol monosolvate (Fig. 1). All bond lengths are as expected (Allen et al., 1987) and are comparable to those observed in related structures (Wu et al., 2011; Fun et al., 2010). The molecule is not planar, forming a dihedral angle of 59.3 (1)° between the mean planes of the phenanthroline (N1/N2/C1—C12) and phenol (C14—C19) rings.
In the crystal, O—H···N hydrogen bonds and weak O—H···N intermolecular interactions are observed (Table 1) as well as weak π-π stacking interactions [Cg1···Cg2 (x, 1+y, z) = 3.701 (1) Å and Cg1···Cg3 (x, 1+y,z) = 3.656 (1) Å, where Cg1(N1/C1—C4/C12), Cg2(N2/C7—C11) and Cg3(C4—C7/C11—C12) are the centroids of the phenonthroline ring], (Fig. 2).