organic compounds
5-(2-Chlorobenzyl)-4,5,6,7-tetrahydrothieno[3,2-c]pyridin-2-yl acetate
aDepartment of Bioengineering, Tianjin Bohai Vocational, and Technical College, Tianjin 300408, People's Republic of China, and bTianjin Institute of Pharmaceutical Research, Tianjin 300193, People's Republic of China
*Correspondence e-mail: jingjing527@sina.com.cn
In the title compound, C16H16ClNO2S, the benzene and thiophene rings make a dihedral angle of 72.60 (4)°. In the crystal, weak C—H⋯O interactions are observed.
Related literature
The title compound is a derivative of the antiplatelet agent clopidogrel [systematic name (+)-(S)-methyl 2-(2-chlorophenyl)-2-(6,7-dihydrothieno[3,2-c]pyridin-5(4H)-yl)acetate]. For background to the bioactivity and applications of clopidogrel, see: Muller et al. (2003); Savi et al. (1994); Sharis et al. (1998). For the synthesis of the title compound, see: Roquettes et al. (1993).
Experimental
Crystal data
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Refinement
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Data collection: CrystalClear (Rigaku/MSC, 2005); cell CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: CrystalStructure (Rigaku/MSC, 2005).
Supporting information
10.1107/S1600536812010045/kp2393sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536812010045/kp2393Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536812010045/kp2393Isup3.cdx
Supporting information file. DOI: 10.1107/S1600536812010045/kp2393Isup4.cml
We used the method of Roquettes et al. (1993) to sythesize the title compound. 8.85 g (0.0316 mol) of 5-(2-chlorobenzyl)-5,6,7,7a-tetrahydro-4H-thieno [3,2-c] pyridine-2-one are dissolved in 120 mL of isopropenyl acetate with 7.8 g (0.0411 mol) of p-toluenesulphonic acid; the medium is stirred at 363 K for 6 h. After cooling to about 293 K, 2 volumes of water are introduced into the medium, the pH is made basic by adding saturated aqueous NaHCO3 solution and the desired product is extracted with ethyl acetate. After removal of the solvent, the oil, dissolved in CH2Cl2, is filtered on silica to give a 68% yield of the target compound. Colourless single crystals were grown from a methanol solution.
All H atoms were positioned geometrically and refined using a riding model, with d(C—H) = 0.95 - 0.99 Å, and Uiso(H) = 1.5 or 1.2Ueq.
Clopidogrel is an oral, thienopyridine class of antiplatelet agent used to inhibit blood clots in coronary artery disease, peripheral vascular disease, and cerebrovascular disease (Muller et al., 2003; Savi et al., 1994; Sharis et al., 1998). The molecular structure of the title compound, a derivative of clopidogrel, is reported here. The thiophene and benzene rings make a dihedral angle of 72.60 (4)°; the tetrahydropyridine ring adopts a half-chair conformation (Fig. 1). In the
the packing is realsied by weak intramolecular C—H···Cl and C—H···N, and intermolecular C—H···O interaction (Table 1).The title compound is a derivative of the antiplatelet agent clopidogrel [systematic name (+)-(S)-methyl 2-(2-chlorophenyl)-2-(6,7-dihydrothieno[3,2-c]pyridin-5(4H)-yl)acetate] . For background to the bioactivity and applications of clopidogrel, see: Muller et al. (2003); Savi et al. (1994); Sharis et al. (1998). For the synthesis of the title compound, see: Roquettes et al. (1993).
Data collection: CrystalClear (Rigaku/MSC, 2005); cell
CrystalClear (Rigaku/MSC, 2005); data reduction: CrystalClear (Rigaku/MSC, 2005); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: CrystalStructure (Rigaku/MSC, 2005).Fig. 1. The molecular structure of (I), with the atom-numbering scheme and 50% probability displacement ellipsoids. |
C16H16ClNO2S | F(000) = 672 |
Mr = 321.81 | Dx = 1.395 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2yn | Cell parameters from 4955 reflections |
a = 14.526 (3) Å | θ = 1.7–27.9° |
b = 6.1065 (12) Å | µ = 0.39 mm−1 |
c = 17.490 (3) Å | T = 113 K |
β = 99.098 (3)° | Prism, colourless |
V = 1532.0 (5) Å3 | 0.20 × 0.18 × 0.10 mm |
Z = 4 |
Rigaku Saturn CCD area-detector diffractometer | 2704 independent reflections |
Radiation source: rotating anode | 2397 reflections with I > 2σ(I) |
Multilayer monochromator | Rint = 0.033 |
Detector resolution: 14.63 pixels mm-1 | θmax = 25.0°, θmin = 1.7° |
ω and φ scans | h = −17→17 |
Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2005) | k = −7→5 |
Tmin = 0.926, Tmax = 0.962 | l = −20→20 |
10686 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.030 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.086 | H-atom parameters constrained |
S = 1.07 | w = 1/[σ2(Fo2) + (0.0514P)2 + 0.2496P] where P = (Fo2 + 2Fc2)/3 |
2704 reflections | (Δ/σ)max = 0.001 |
191 parameters | Δρmax = 0.18 e Å−3 |
0 restraints | Δρmin = −0.31 e Å−3 |
C16H16ClNO2S | V = 1532.0 (5) Å3 |
Mr = 321.81 | Z = 4 |
Monoclinic, P21/n | Mo Kα radiation |
a = 14.526 (3) Å | µ = 0.39 mm−1 |
b = 6.1065 (12) Å | T = 113 K |
c = 17.490 (3) Å | 0.20 × 0.18 × 0.10 mm |
β = 99.098 (3)° |
Rigaku Saturn CCD area-detector diffractometer | 2704 independent reflections |
Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2005) | 2397 reflections with I > 2σ(I) |
Tmin = 0.926, Tmax = 0.962 | Rint = 0.033 |
10686 measured reflections |
R[F2 > 2σ(F2)] = 0.030 | 0 restraints |
wR(F2) = 0.086 | H-atom parameters constrained |
S = 1.07 | Δρmax = 0.18 e Å−3 |
2704 reflections | Δρmin = −0.31 e Å−3 |
191 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Cl1 | 0.64701 (3) | 0.34141 (7) | 0.05214 (2) | 0.03277 (14) | |
S1 | 0.08191 (2) | 0.16665 (6) | 0.14645 (2) | 0.01970 (13) | |
O1 | −0.07808 (8) | −0.0621 (2) | 0.12690 (7) | 0.0350 (3) | |
O2 | 0.03009 (7) | −0.21624 (17) | 0.06530 (6) | 0.0227 (2) | |
N1 | 0.38577 (8) | 0.2952 (2) | 0.15330 (6) | 0.0197 (3) | |
C1 | −0.11190 (11) | −0.4038 (3) | 0.05983 (9) | 0.0262 (4) | |
H1A | −0.1710 | −0.4020 | 0.0802 | 0.039* | |
H1B | −0.0773 | −0.5373 | 0.0771 | 0.039* | |
H1C | −0.1245 | −0.4005 | 0.0031 | 0.039* | |
C2 | −0.05566 (10) | −0.2093 (3) | 0.08876 (8) | 0.0232 (3) | |
C3 | 0.09637 (10) | −0.0575 (2) | 0.08845 (8) | 0.0189 (3) | |
C4 | 0.18265 (10) | −0.0674 (2) | 0.06854 (8) | 0.0192 (3) | |
H4 | 0.2022 | −0.1776 | 0.0362 | 0.023* | |
C5 | 0.24081 (10) | 0.1077 (2) | 0.10193 (7) | 0.0180 (3) | |
C6 | 0.34116 (10) | 0.1424 (2) | 0.09400 (8) | 0.0209 (3) | |
H6A | 0.3745 | 0.0004 | 0.0994 | 0.025* | |
H6B | 0.3451 | 0.2017 | 0.0419 | 0.025* | |
C7 | 0.32906 (10) | 0.4937 (3) | 0.15410 (8) | 0.0212 (3) | |
H7A | 0.3132 | 0.5520 | 0.1008 | 0.025* | |
H7B | 0.3651 | 0.6070 | 0.1865 | 0.025* | |
C8 | 0.23974 (10) | 0.4424 (2) | 0.18630 (8) | 0.0205 (3) | |
H8A | 0.2543 | 0.4127 | 0.2426 | 0.025* | |
H8B | 0.1965 | 0.5686 | 0.1782 | 0.025* | |
C9 | 0.19592 (10) | 0.2454 (3) | 0.14461 (8) | 0.0187 (3) | |
C10 | 0.47954 (10) | 0.3512 (2) | 0.13892 (9) | 0.0243 (4) | |
H10A | 0.5017 | 0.4817 | 0.1701 | 0.029* | |
H10B | 0.4764 | 0.3902 | 0.0836 | 0.029* | |
C11 | 0.54919 (10) | 0.1683 (2) | 0.15836 (8) | 0.0199 (3) | |
C12 | 0.54030 (10) | 0.0141 (3) | 0.21553 (8) | 0.0245 (3) | |
H12 | 0.4874 | 0.0207 | 0.2412 | 0.029* | |
C13 | 0.60608 (11) | −0.1481 (3) | 0.23609 (9) | 0.0258 (4) | |
H13 | 0.5982 | −0.2505 | 0.2754 | 0.031* | |
C14 | 0.68378 (11) | −0.1607 (3) | 0.19890 (9) | 0.0264 (4) | |
H14 | 0.7289 | −0.2724 | 0.2125 | 0.032* | |
C15 | 0.69503 (11) | −0.0102 (3) | 0.14218 (8) | 0.0259 (4) | |
H15 | 0.7480 | −0.0172 | 0.1166 | 0.031* | |
C16 | 0.62835 (10) | 0.1509 (2) | 0.12296 (8) | 0.0208 (3) |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cl1 | 0.0313 (2) | 0.0369 (3) | 0.0341 (2) | 0.00271 (18) | 0.01724 (18) | 0.01129 (18) |
S1 | 0.0156 (2) | 0.0234 (2) | 0.0206 (2) | 0.00371 (15) | 0.00426 (15) | −0.00402 (15) |
O1 | 0.0202 (6) | 0.0410 (7) | 0.0459 (7) | −0.0015 (5) | 0.0117 (5) | −0.0193 (6) |
O2 | 0.0158 (5) | 0.0253 (6) | 0.0273 (5) | 0.0010 (4) | 0.0048 (4) | −0.0066 (5) |
N1 | 0.0158 (6) | 0.0185 (6) | 0.0250 (7) | 0.0012 (5) | 0.0039 (5) | 0.0012 (5) |
C1 | 0.0193 (8) | 0.0292 (9) | 0.0295 (8) | −0.0003 (7) | 0.0019 (6) | −0.0017 (7) |
C2 | 0.0144 (7) | 0.0307 (9) | 0.0240 (7) | 0.0029 (7) | 0.0017 (6) | 0.0001 (7) |
C3 | 0.0178 (7) | 0.0210 (8) | 0.0176 (7) | 0.0025 (6) | 0.0014 (5) | −0.0023 (6) |
C4 | 0.0187 (8) | 0.0201 (8) | 0.0189 (7) | 0.0054 (6) | 0.0031 (6) | −0.0010 (6) |
C5 | 0.0177 (7) | 0.0200 (7) | 0.0161 (7) | 0.0043 (6) | 0.0021 (5) | 0.0027 (6) |
C6 | 0.0197 (8) | 0.0215 (8) | 0.0224 (7) | 0.0032 (6) | 0.0061 (6) | 0.0005 (6) |
C7 | 0.0229 (8) | 0.0185 (8) | 0.0223 (7) | 0.0012 (6) | 0.0042 (6) | 0.0007 (6) |
C8 | 0.0206 (8) | 0.0211 (8) | 0.0206 (7) | 0.0024 (6) | 0.0057 (6) | −0.0016 (6) |
C9 | 0.0155 (7) | 0.0226 (8) | 0.0178 (7) | 0.0027 (6) | 0.0028 (5) | 0.0015 (6) |
C10 | 0.0180 (8) | 0.0233 (8) | 0.0325 (8) | −0.0011 (6) | 0.0063 (6) | 0.0047 (7) |
C11 | 0.0166 (7) | 0.0210 (8) | 0.0212 (7) | −0.0030 (6) | 0.0003 (6) | −0.0018 (6) |
C12 | 0.0206 (8) | 0.0282 (9) | 0.0256 (7) | −0.0031 (7) | 0.0069 (6) | 0.0022 (7) |
C13 | 0.0265 (9) | 0.0251 (9) | 0.0251 (8) | −0.0022 (7) | 0.0019 (6) | 0.0048 (7) |
C14 | 0.0219 (8) | 0.0252 (9) | 0.0302 (8) | 0.0046 (7) | −0.0015 (6) | −0.0015 (7) |
C15 | 0.0199 (8) | 0.0315 (9) | 0.0268 (8) | 0.0018 (7) | 0.0047 (6) | −0.0036 (7) |
C16 | 0.0212 (8) | 0.0227 (8) | 0.0187 (7) | −0.0045 (6) | 0.0038 (6) | −0.0003 (6) |
Cl1—C16 | 1.7515 (15) | C7—C8 | 1.526 (2) |
S1—C9 | 1.7298 (15) | C7—H7A | 0.9900 |
S1—C3 | 1.7362 (14) | C7—H7B | 0.9900 |
O1—C2 | 1.1946 (19) | C8—C9 | 1.496 (2) |
O2—C2 | 1.3722 (17) | C8—H8A | 0.9900 |
O2—C3 | 1.3810 (18) | C8—H8B | 0.9900 |
N1—C10 | 1.4641 (18) | C10—C11 | 1.509 (2) |
N1—C7 | 1.4671 (19) | C10—H10A | 0.9900 |
N1—C6 | 1.4676 (19) | C10—H10B | 0.9900 |
C1—C2 | 1.485 (2) | C11—C16 | 1.393 (2) |
C1—H1A | 0.9800 | C11—C12 | 1.394 (2) |
C1—H1B | 0.9800 | C12—C13 | 1.384 (2) |
C1—H1C | 0.9800 | C12—H12 | 0.9500 |
C3—C4 | 1.354 (2) | C13—C14 | 1.391 (2) |
C4—C5 | 1.429 (2) | C13—H13 | 0.9500 |
C4—H4 | 0.9500 | C14—C15 | 1.381 (2) |
C5—C9 | 1.358 (2) | C14—H14 | 0.9500 |
C5—C6 | 1.501 (2) | C15—C16 | 1.384 (2) |
C6—H6A | 0.9900 | C15—H15 | 0.9500 |
C6—H6B | 0.9900 | ||
C9—S1—C3 | 90.21 (7) | H7A—C7—H7B | 108.1 |
C2—O2—C3 | 120.95 (12) | C9—C8—C7 | 107.84 (12) |
C10—N1—C7 | 110.35 (12) | C9—C8—H8A | 110.1 |
C10—N1—C6 | 110.24 (11) | C7—C8—H8A | 110.1 |
C7—N1—C6 | 110.26 (11) | C9—C8—H8B | 110.1 |
C2—C1—H1A | 109.5 | C7—C8—H8B | 110.1 |
C2—C1—H1B | 109.5 | H8A—C8—H8B | 108.5 |
H1A—C1—H1B | 109.5 | C5—C9—C8 | 124.19 (13) |
C2—C1—H1C | 109.5 | C5—C9—S1 | 112.48 (11) |
H1A—C1—H1C | 109.5 | C8—C9—S1 | 123.33 (11) |
H1B—C1—H1C | 109.5 | N1—C10—C11 | 113.41 (12) |
O1—C2—O2 | 122.06 (14) | N1—C10—H10A | 108.9 |
O1—C2—C1 | 127.46 (14) | C11—C10—H10A | 108.9 |
O2—C2—C1 | 110.48 (13) | N1—C10—H10B | 108.9 |
C4—C3—O2 | 121.60 (13) | C11—C10—H10B | 108.9 |
C4—C3—S1 | 112.82 (11) | H10A—C10—H10B | 107.7 |
O2—C3—S1 | 125.56 (10) | C16—C11—C12 | 116.34 (14) |
C3—C4—C5 | 111.90 (13) | C16—C11—C10 | 121.82 (13) |
C3—C4—H4 | 124.1 | C12—C11—C10 | 121.76 (13) |
C5—C4—H4 | 124.1 | C13—C12—C11 | 122.09 (14) |
C9—C5—C4 | 112.57 (13) | C13—C12—H12 | 119.0 |
C9—C5—C6 | 121.40 (13) | C11—C12—H12 | 119.0 |
C4—C5—C6 | 126.01 (13) | C12—C13—C14 | 119.74 (14) |
N1—C6—C5 | 110.56 (11) | C12—C13—H13 | 120.1 |
N1—C6—H6A | 109.5 | C14—C13—H13 | 120.1 |
C5—C6—H6A | 109.5 | C15—C14—C13 | 119.75 (15) |
N1—C6—H6B | 109.5 | C15—C14—H14 | 120.1 |
C5—C6—H6B | 109.5 | C13—C14—H14 | 120.1 |
H6A—C6—H6B | 108.1 | C14—C15—C16 | 119.31 (14) |
N1—C7—C8 | 110.19 (12) | C14—C15—H15 | 120.3 |
N1—C7—H7A | 109.6 | C16—C15—H15 | 120.3 |
C8—C7—H7A | 109.6 | C15—C16—C11 | 122.76 (14) |
N1—C7—H7B | 109.6 | C15—C16—Cl1 | 117.60 (12) |
C8—C7—H7B | 109.6 | C11—C16—Cl1 | 119.63 (12) |
C3—O2—C2—O1 | 3.4 (2) | C6—C5—C9—S1 | −178.61 (10) |
C3—O2—C2—C1 | −176.85 (12) | C7—C8—C9—C5 | 15.76 (19) |
C2—O2—C3—C4 | 177.09 (13) | C7—C8—C9—S1 | −164.89 (10) |
C2—O2—C3—S1 | −1.09 (19) | C3—S1—C9—C5 | 0.20 (11) |
C9—S1—C3—C4 | −0.86 (11) | C3—S1—C9—C8 | −179.22 (12) |
C9—S1—C3—O2 | 177.46 (12) | C7—N1—C10—C11 | 164.39 (12) |
O2—C3—C4—C5 | −177.12 (12) | C6—N1—C10—C11 | −73.58 (15) |
S1—C3—C4—C5 | 1.27 (15) | N1—C10—C11—C16 | 154.60 (13) |
C3—C4—C5—C9 | −1.12 (17) | N1—C10—C11—C12 | −28.7 (2) |
C3—C4—C5—C6 | 177.91 (13) | C16—C11—C12—C13 | −0.2 (2) |
C10—N1—C6—C5 | −172.40 (12) | C10—C11—C12—C13 | −177.04 (14) |
C7—N1—C6—C5 | −50.32 (15) | C11—C12—C13—C14 | −0.3 (2) |
C9—C5—C6—N1 | 15.88 (18) | C12—C13—C14—C15 | 0.5 (2) |
C4—C5—C6—N1 | −163.07 (12) | C13—C14—C15—C16 | −0.2 (2) |
C10—N1—C7—C8 | −167.59 (12) | C14—C15—C16—C11 | −0.2 (2) |
C6—N1—C7—C8 | 70.39 (14) | C14—C15—C16—Cl1 | 178.66 (11) |
N1—C7—C8—C9 | −49.62 (14) | C12—C11—C16—C15 | 0.5 (2) |
C4—C5—C9—C8 | 179.88 (12) | C10—C11—C16—C15 | 177.29 (14) |
C6—C5—C9—C8 | 0.8 (2) | C12—C11—C16—Cl1 | −178.42 (11) |
C4—C5—C9—S1 | 0.47 (16) | C10—C11—C16—Cl1 | −1.6 (2) |
D—H···A | D—H | H···A | D···A | D—H···A |
C10—H10B···Cl1 | 0.99 | 2.64 | 3.0648 (16) | 106 |
C12—H12···N1 | 0.95 | 2.58 | 2.898 (2) | 100 |
C15—H15···O1i | 0.95 | 2.52 | 3.364 (2) | 148 |
Symmetry code: (i) x+1, y, z. |
Experimental details
Crystal data | |
Chemical formula | C16H16ClNO2S |
Mr | 321.81 |
Crystal system, space group | Monoclinic, P21/n |
Temperature (K) | 113 |
a, b, c (Å) | 14.526 (3), 6.1065 (12), 17.490 (3) |
β (°) | 99.098 (3) |
V (Å3) | 1532.0 (5) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.39 |
Crystal size (mm) | 0.20 × 0.18 × 0.10 |
Data collection | |
Diffractometer | Rigaku Saturn CCD area-detector |
Absorption correction | Multi-scan (CrystalClear; Rigaku/MSC, 2005) |
Tmin, Tmax | 0.926, 0.962 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 10686, 2704, 2397 |
Rint | 0.033 |
(sin θ/λ)max (Å−1) | 0.595 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.030, 0.086, 1.07 |
No. of reflections | 2704 |
No. of parameters | 191 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.18, −0.31 |
Computer programs: CrystalClear (Rigaku/MSC, 2005), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008), CrystalStructure (Rigaku/MSC, 2005).
D—H···A | D—H | H···A | D···A | D—H···A |
C15—H15···O1i | 0.95 | 2.52 | 3.364 (2) | 148.1 |
Symmetry code: (i) x+1, y, z. |
Acknowledgements
The authors thank Mr Hai-Bin Song at Nankai University for the X-ray crystallographic determination and helpful suggestions.
References
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Clopidogrel is an oral, thienopyridine class of antiplatelet agent used to inhibit blood clots in coronary artery disease, peripheral vascular disease, and cerebrovascular disease (Muller et al., 2003; Savi et al., 1994; Sharis et al., 1998). The molecular structure of the title compound, a derivative of clopidogrel, is reported here. The thiophene and benzene rings make a dihedral angle of 72.60 (4)°; the tetrahydropyridine ring adopts a half-chair conformation (Fig. 1). In the crystal structure, the packing is realsied by weak intramolecular C—H···Cl and C—H···N, and intermolecular C—H···O interaction (Table 1).