metal-organic compounds
Bis(guanidinium) tris(pyridine-2,6-dicarboxylato-κ3O2,N,O6)zirconate(II) tetrahydrate
aDepartment of Chemistry, Yazd Branch, Islamic Azad University, Yazd, Iran, bDepartment of Chemistry, Faculty of Science, Khorramabad Branch, Islamic Azad, University, Khorramabad, Iran, and cFaculty of Chemistry, Tarbiat Moallem University, 49 Mofateh Avenue, Tehran, Iran
*Correspondence e-mail: tabatabaee45m@yahoo.com
In the title complex, (CH6N3)2[Zr(C7H3NO4)3]·4H2O, the ZrIV ion lies on a twofold rotation axes and is coordinated by six O and three N atoms of three tridentate pyridine-2,6-dicarboxylate ligands, forming a slightly distorted tricapped trigonal–prismatic geometry. In the crystal, O—H⋯O and N—H⋯O hydrogen bonds link the components into a three-dimensional network.
Related literature
For related structures, see: Aghabozorg et al. (2005); Tabatabaee (2010); Tabatabaee et al. (2009, 2011a,b,c, 2012); Derikvand et al. (2010); Attar Gharamaleki et al. (2009).
Experimental
Crystal data
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Refinement
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Data collection: SMART (Bruker, 1998); cell SAINT (Bruker, 1998); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL, DIAMOND (Brandenburg, 1999) and Mercury (Macrae et al., 2006); software used to prepare material for publication: SHELXTL.
Supporting information
10.1107/S1600536812011439/lh5430sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536812011439/lh5430Isup2.hkl
An aqueous solution of ZrOCl2.8H2O, (161 mg, 0.5 mmol) in water (5 ml) was added to a stirring solution of (20 ml) pyridine-2,6-dicarboxylic acid (176 mg, 1 mmol) and guanidine hydrochloride (95 mg, 1 mmol). The reaction mixture was stirred at 298K for 1 h. Colorless crystals of the title compound were obtained after 4 days by slow evaporation of the solvent at room temperature.
H atoms bonded to C atoms were placed in calculated positions. The H atoms of water molecules and NH2 groups were located in difference Fourier maps and included in 'as found' positions. All hydrogen atoms were refined in isotropic approximatiom in a riding-model approximation with Uiso(H) parameters equal to 1.2 Ueq(C), 1.5 Ueq(O,N).
In recent years, our research group has been interested in the synthesis of proton transfer compounds and study of their behavior with metal ions. We have focused on the proton delivery of polycarboxylic acids. Pyridine-2,6-dicarboxylic acid (pydcH2) is a very important carboxylate derivative and has attracted much interest in coordination chemistry. This is the acid we have utilized widely in our studies (Tabatabaee et al., 2010, 2011a, 2011b, 2011c, 2012; Derikvand et al., 2010; Attar Gharamaleki et al., 2009). In this paper we report the
of the title complex (I). The ZrIV ion lies on a twofold rotation axis. The and the symmetry complete cation is shown in Fig. 1. The ZrIV atom is coordinated by three tridentate pydc ligands forming a slightly distorted tricapped trigonal prismatic environment (Fig. 2). The Zr—N distances and Zr—O distances are consistent with those found in (pydaH)2[Zr(pydc)3].5H2O (Aghabozorg et al., 2005). In the crystal, O—H···O and N—H···O hydrogen bonds (Table 1) link the components into a three-dimensional network (Fig. 3).For related structures, see: Aghabozorg et al. (2005); Tabatabaee et al. (2009, 2010, 2011a,b,c, 2012); Derikvand et al. (2010); Attar Gharamaleki et al. (2009).
Data collection: SMART (Bruker, 1998); cell
SAINT (Bruker, 1998); data reduction: SAINT (Bruker, 1998); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008), DIAMOND (Brandenburg, 1999) and Mercury (Macrae et al., 2006); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).Fig. 1. The molecular structure of (I) with ellipsoids drawn at the 50% probability level. The unlabeled atoms are related by the symmetry operator (-x+1, y, -z+1/2). Only the symmetry unique anions and water molecules are shown. | |
Fig. 2. View of the coordination environment of the ZrIV ion. | |
Fig. 3. Part of the crystal structure of (I). The donor to acceptor distances of the hydrogen bonds are shown as dotted lines. |
(CH6N3)2[Zr(C7H3NO4)3]·4H2O | F(000) = 1592 |
Mr = 778.77 | Dx = 1.672 Mg m−3 |
Orthorhombic, Pbcn | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2n 2ab | Cell parameters from 4151 reflections |
a = 17.2444 (9) Å | θ = 2.3–26.0° |
b = 10.8583 (5) Å | µ = 0.45 mm−1 |
c = 16.5268 (8) Å | T = 120 K |
V = 3094.6 (3) Å3 | Prism, colorless |
Z = 4 | 0.17 × 0.15 × 0.07 mm |
Bruker SMART 1000 CCD diffractometer | 4116 independent reflections |
Radiation source: normal-focus sealed tube | 2884 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.068 |
ω scans | θmax = 29.0°, θmin = 2.2° |
Absorption correction: multi-scan (SADABS; Bruker, 1998) | h = −23→23 |
Tmin = 0.884, Tmax = 0.970 | k = −14→14 |
32229 measured reflections | l = −22→22 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.056 | Hydrogen site location: mixed |
wR(F2) = 0.146 | H-atom parameters constrained |
S = 1.07 | w = 1/[σ2(Fo2) + (0.0562P)2 + 8.430P] where P = (Fo2 + 2Fc2)/3 |
4116 reflections | (Δ/σ)max < 0.001 |
223 parameters | Δρmax = 0.87 e Å−3 |
0 restraints | Δρmin = −0.47 e Å−3 |
(CH6N3)2[Zr(C7H3NO4)3]·4H2O | V = 3094.6 (3) Å3 |
Mr = 778.77 | Z = 4 |
Orthorhombic, Pbcn | Mo Kα radiation |
a = 17.2444 (9) Å | µ = 0.45 mm−1 |
b = 10.8583 (5) Å | T = 120 K |
c = 16.5268 (8) Å | 0.17 × 0.15 × 0.07 mm |
Bruker SMART 1000 CCD diffractometer | 4116 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 1998) | 2884 reflections with I > 2σ(I) |
Tmin = 0.884, Tmax = 0.970 | Rint = 0.068 |
32229 measured reflections |
R[F2 > 2σ(F2)] = 0.056 | 0 restraints |
wR(F2) = 0.146 | H-atom parameters constrained |
S = 1.07 | Δρmax = 0.87 e Å−3 |
4116 reflections | Δρmin = −0.47 e Å−3 |
223 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Zr1 | 0.5000 | 0.72625 (4) | 0.2500 | 0.01631 (13) | |
O1 | 0.38154 (13) | 0.6592 (2) | 0.28200 (14) | 0.0245 (5) | |
O2 | 0.25204 (15) | 0.6675 (3) | 0.27362 (17) | 0.0349 (6) | |
O3 | 0.54360 (12) | 0.8668 (2) | 0.16530 (13) | 0.0226 (5) | |
O4 | 0.53142 (16) | 1.0370 (2) | 0.09047 (17) | 0.0362 (6) | |
O5 | 0.47334 (14) | 0.6443 (2) | 0.12914 (14) | 0.0236 (5) | |
O6 | 0.42065 (17) | 0.4926 (2) | 0.05627 (15) | 0.0354 (6) | |
N1 | 0.40034 (15) | 0.8418 (2) | 0.18731 (16) | 0.0214 (5) | |
N2 | 0.5000 | 0.5072 (3) | 0.2500 | 0.0171 (7) | |
C1 | 0.32630 (19) | 0.8123 (3) | 0.20019 (19) | 0.0225 (6) | |
C2 | 0.2655 (2) | 0.8764 (3) | 0.1641 (2) | 0.0292 (7) | |
H2A | 0.2131 | 0.8533 | 0.1731 | 0.035* | |
C3 | 0.2842 (2) | 0.9750 (3) | 0.1146 (2) | 0.0295 (7) | |
H3A | 0.2441 | 1.0216 | 0.0898 | 0.035* | |
C4 | 0.3609 (2) | 1.0061 (3) | 0.1010 (2) | 0.0273 (7) | |
H4A | 0.3743 | 1.0733 | 0.0670 | 0.033* | |
C5 | 0.41742 (19) | 0.9359 (3) | 0.13861 (19) | 0.0219 (6) | |
C6 | 0.31649 (18) | 0.7054 (3) | 0.25566 (19) | 0.0218 (6) | |
C7 | 0.50369 (18) | 0.9516 (3) | 0.12932 (18) | 0.0205 (6) | |
C8 | 0.47612 (18) | 0.4462 (3) | 0.18438 (19) | 0.0222 (6) | |
C9 | 0.4742 (2) | 0.3187 (3) | 0.1823 (2) | 0.0273 (7) | |
H9A | 0.4557 | 0.2761 | 0.1360 | 0.033* | |
C10 | 0.5000 | 0.2551 (4) | 0.2500 | 0.0284 (10) | |
H10A | 0.5000 | 0.1676 | 0.2500 | 0.034* | |
C11 | 0.45375 (19) | 0.5307 (3) | 0.1163 (2) | 0.0240 (6) | |
N3 | 0.33875 (17) | 0.4432 (3) | 0.38628 (19) | 0.0312 (7) | |
H3NA | 0.3482 | 0.5016 | 0.3616 | 0.047* | |
H3NB | 0.3752 | 0.4039 | 0.4112 | 0.047* | |
N4 | 0.25724 (18) | 0.3150 (3) | 0.45574 (18) | 0.0314 (7) | |
H4NA | 0.2971 | 0.2749 | 0.4652 | 0.047* | |
H4NB | 0.2158 | 0.2885 | 0.4626 | 0.047* | |
N5 | 0.20814 (17) | 0.4727 (3) | 0.3776 (2) | 0.0364 (8) | |
H5NA | 0.2166 | 0.5344 | 0.3439 | 0.055* | |
H5NB | 0.1654 | 0.4517 | 0.3865 | 0.055* | |
C12 | 0.26720 (19) | 0.4098 (3) | 0.4060 (2) | 0.0268 (7) | |
O1W | 0.39648 (14) | 0.2667 (2) | −0.01609 (15) | 0.0279 (5) | |
H1WA | 0.4195 | 0.2642 | −0.0607 | 0.042* | |
H1WB | 0.4026 | 0.3377 | 0.0100 | 0.042* | |
O2W | 0.58669 (15) | 0.2479 (2) | 0.01935 (16) | 0.0310 (6) | |
H2WA | 0.5768 | 0.2747 | −0.0287 | 0.047* | |
H2WB | 0.5631 | 0.1722 | 0.0319 | 0.047* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Zr1 | 0.0173 (2) | 0.0148 (2) | 0.0169 (2) | 0.000 | −0.00061 (15) | 0.000 |
O1 | 0.0241 (12) | 0.0232 (11) | 0.0261 (11) | −0.0009 (9) | −0.0003 (9) | 0.0031 (9) |
O2 | 0.0217 (12) | 0.0369 (15) | 0.0462 (15) | −0.0031 (11) | 0.0017 (11) | 0.0095 (12) |
O3 | 0.0213 (11) | 0.0233 (11) | 0.0232 (11) | −0.0011 (9) | 0.0001 (9) | 0.0015 (9) |
O4 | 0.0327 (13) | 0.0314 (14) | 0.0444 (15) | −0.0070 (11) | −0.0008 (12) | 0.0144 (12) |
O5 | 0.0280 (11) | 0.0211 (11) | 0.0216 (11) | −0.0035 (9) | −0.0030 (9) | 0.0003 (9) |
O6 | 0.0521 (16) | 0.0249 (12) | 0.0292 (13) | −0.0054 (11) | −0.0141 (12) | −0.0004 (10) |
N1 | 0.0231 (13) | 0.0206 (13) | 0.0205 (13) | −0.0005 (10) | 0.0002 (10) | −0.0013 (10) |
N2 | 0.0149 (15) | 0.0161 (16) | 0.0203 (16) | 0.000 | 0.0013 (13) | 0.000 |
C1 | 0.0236 (15) | 0.0212 (14) | 0.0228 (15) | 0.0026 (12) | −0.0013 (12) | 0.0011 (12) |
C2 | 0.0220 (16) | 0.0310 (18) | 0.0345 (19) | 0.0021 (13) | −0.0010 (14) | 0.0036 (15) |
C3 | 0.0256 (17) | 0.0336 (18) | 0.0294 (17) | 0.0077 (14) | −0.0024 (14) | 0.0045 (15) |
C4 | 0.0311 (17) | 0.0233 (16) | 0.0276 (16) | 0.0032 (13) | −0.0045 (13) | 0.0055 (13) |
C5 | 0.0260 (15) | 0.0163 (14) | 0.0235 (15) | 0.0008 (12) | −0.0029 (12) | −0.0002 (12) |
C6 | 0.0192 (14) | 0.0226 (15) | 0.0235 (15) | −0.0006 (11) | 0.0006 (12) | −0.0015 (12) |
C7 | 0.0258 (15) | 0.0177 (13) | 0.0179 (13) | −0.0029 (12) | −0.0011 (12) | −0.0001 (11) |
C8 | 0.0199 (14) | 0.0238 (16) | 0.0230 (15) | −0.0014 (12) | 0.0018 (11) | −0.0023 (13) |
C9 | 0.0365 (18) | 0.0214 (16) | 0.0239 (16) | −0.0030 (14) | −0.0006 (13) | −0.0025 (13) |
C10 | 0.040 (3) | 0.020 (2) | 0.025 (2) | 0.000 | −0.003 (2) | 0.000 |
C11 | 0.0244 (15) | 0.0240 (16) | 0.0235 (15) | −0.0002 (12) | −0.0027 (12) | −0.0022 (12) |
N3 | 0.0240 (14) | 0.0321 (16) | 0.0375 (17) | −0.0040 (12) | 0.0005 (12) | 0.0113 (13) |
N4 | 0.0269 (15) | 0.0324 (16) | 0.0348 (16) | −0.0033 (12) | 0.0041 (12) | 0.0093 (13) |
N5 | 0.0208 (14) | 0.0441 (19) | 0.0444 (19) | −0.0014 (13) | 0.0018 (13) | 0.0160 (15) |
C12 | 0.0275 (17) | 0.0300 (17) | 0.0228 (16) | −0.0002 (14) | −0.0002 (12) | 0.0000 (13) |
O1W | 0.0299 (12) | 0.0258 (12) | 0.0280 (12) | −0.0058 (10) | 0.0040 (10) | −0.0057 (10) |
O2W | 0.0336 (13) | 0.0273 (12) | 0.0323 (13) | −0.0075 (10) | −0.0053 (11) | 0.0050 (10) |
Zr1—O3 | 2.203 (2) | C3—H3A | 0.9500 |
Zr1—O3i | 2.203 (2) | C4—C5 | 1.384 (4) |
Zr1—O1i | 2.232 (2) | C4—H4A | 0.9500 |
Zr1—O1 | 2.232 (2) | C5—C7 | 1.505 (4) |
Zr1—O5 | 2.234 (2) | C8—C9 | 1.384 (5) |
Zr1—O5i | 2.234 (2) | C8—C11 | 1.503 (5) |
Zr1—N1i | 2.366 (3) | C9—C10 | 1.388 (4) |
Zr1—N1 | 2.366 (3) | C9—H9A | 0.9500 |
Zr1—N2 | 2.378 (4) | C10—C9i | 1.388 (4) |
O1—C6 | 1.304 (4) | C10—H10A | 0.9500 |
O2—C6 | 1.222 (4) | N3—C12 | 1.327 (4) |
O3—C7 | 1.294 (4) | N3—H3NA | 0.7713 |
O4—C7 | 1.225 (4) | N3—H3NB | 0.8647 |
O5—C11 | 1.297 (4) | N4—C12 | 1.329 (4) |
O6—C11 | 1.217 (4) | N4—H4NA | 0.8289 |
N1—C1 | 1.333 (4) | N4—H4NB | 0.7790 |
N1—C5 | 1.334 (4) | N5—C12 | 1.312 (4) |
N2—C8 | 1.336 (4) | N5—H5NA | 0.8832 |
N2—C8i | 1.336 (4) | N5—H5NB | 0.7861 |
C1—C2 | 1.393 (5) | O1W—H1WA | 0.8370 |
C1—C6 | 1.489 (5) | O1W—H1WB | 0.8899 |
C2—C3 | 1.386 (5) | O2W—H2WA | 0.8620 |
C2—H2A | 0.9500 | O2W—H2WB | 0.9408 |
C3—C4 | 1.382 (5) | ||
O3—Zr1—O3i | 92.30 (12) | N1—C1—C6 | 113.2 (3) |
O3—Zr1—O1i | 76.29 (8) | C2—C1—C6 | 124.6 (3) |
O3i—Zr1—O1i | 133.53 (8) | C3—C2—C1 | 117.6 (3) |
O3—Zr1—O1 | 133.53 (8) | C3—C2—H2A | 121.2 |
O3i—Zr1—O1 | 76.29 (8) | C1—C2—H2A | 121.2 |
O1i—Zr1—O1 | 141.94 (12) | C4—C3—C2 | 120.5 (3) |
O3—Zr1—O5 | 77.18 (8) | C4—C3—H3A | 119.8 |
O3i—Zr1—O5 | 140.67 (8) | C2—C3—H3A | 119.8 |
O1i—Zr1—O5 | 81.18 (9) | C3—C4—C5 | 117.8 (3) |
O1—Zr1—O5 | 83.89 (9) | C3—C4—H4A | 121.1 |
O3—Zr1—O5i | 140.67 (8) | C5—C4—H4A | 121.1 |
O3i—Zr1—O5i | 77.18 (8) | N1—C5—C4 | 122.5 (3) |
O1i—Zr1—O5i | 83.89 (9) | N1—C5—C7 | 111.5 (3) |
O1—Zr1—O5i | 81.18 (9) | C4—C5—C7 | 126.0 (3) |
O5—Zr1—O5i | 133.07 (12) | O2—C6—O1 | 124.9 (3) |
O3—Zr1—N1i | 70.31 (8) | O2—C6—C1 | 121.0 (3) |
O3i—Zr1—N1i | 66.58 (8) | O1—C6—C1 | 114.1 (3) |
O1i—Zr1—N1i | 67.17 (9) | O4—C7—O3 | 124.9 (3) |
O1—Zr1—N1i | 137.20 (9) | O4—C7—C5 | 121.7 (3) |
O5—Zr1—N1i | 138.75 (9) | O3—C7—C5 | 113.4 (3) |
O5i—Zr1—N1i | 70.75 (9) | N2—C8—C9 | 121.6 (3) |
O3—Zr1—N1 | 66.58 (8) | N2—C8—C11 | 112.6 (3) |
O3i—Zr1—N1 | 70.31 (8) | C9—C8—C11 | 125.9 (3) |
O1i—Zr1—N1 | 137.20 (9) | C8—C9—C10 | 118.1 (3) |
O1—Zr1—N1 | 67.17 (9) | C8—C9—H9A | 121.0 |
O5—Zr1—N1 | 70.75 (9) | C10—C9—H9A | 121.0 |
O5i—Zr1—N1 | 138.75 (9) | C9—C10—C9i | 120.2 (4) |
N1i—Zr1—N1 | 115.98 (13) | C9—C10—H10A | 119.9 |
O3—Zr1—N2 | 133.85 (6) | C9i—C10—H10A | 119.9 |
O3i—Zr1—N2 | 133.85 (6) | O6—C11—O5 | 125.4 (3) |
O1i—Zr1—N2 | 70.97 (6) | O6—C11—C8 | 121.6 (3) |
O1—Zr1—N2 | 70.97 (6) | O5—C11—C8 | 113.1 (3) |
O5—Zr1—N2 | 66.54 (6) | C12—N3—H3NA | 123.4 |
O5i—Zr1—N2 | 66.54 (6) | C12—N3—H3NB | 115.1 |
N1i—Zr1—N2 | 122.01 (6) | H3NA—N3—H3NB | 120.4 |
N1—Zr1—N2 | 122.01 (6) | C12—N4—H4NA | 114.6 |
C6—O1—Zr1 | 125.7 (2) | C12—N4—H4NB | 119.6 |
C7—O3—Zr1 | 127.11 (19) | H4NA—N4—H4NB | 122.8 |
C11—O5—Zr1 | 125.4 (2) | C12—N5—H5NA | 119.5 |
C1—N1—C5 | 119.5 (3) | C12—N5—H5NB | 120.7 |
C1—N1—Zr1 | 119.9 (2) | H5NA—N5—H5NB | 119.5 |
C5—N1—Zr1 | 120.7 (2) | N5—C12—N3 | 119.5 (3) |
C8—N2—C8i | 120.5 (4) | N5—C12—N4 | 121.6 (3) |
C8—N2—Zr1 | 119.8 (2) | N3—C12—N4 | 118.9 (3) |
C8i—N2—Zr1 | 119.8 (2) | H1WA—O1W—H1WB | 113.4 |
N1—C1—C2 | 122.2 (3) | H2WA—O2W—H2WB | 114.3 |
O3—Zr1—O1—C6 | −5.4 (3) | O3—Zr1—N2—C8i | 130.96 (17) |
O3i—Zr1—O1—C6 | 74.6 (2) | O3i—Zr1—N2—C8i | −49.04 (17) |
O1i—Zr1—O1—C6 | −138.4 (3) | O1i—Zr1—N2—C8i | 83.72 (17) |
O5—Zr1—O1—C6 | −71.2 (3) | O1—Zr1—N2—C8i | −96.28 (17) |
O5i—Zr1—O1—C6 | 153.4 (3) | O5—Zr1—N2—C8i | 172.17 (17) |
N1i—Zr1—O1—C6 | 104.6 (3) | O5i—Zr1—N2—C8i | −7.83 (17) |
N1—Zr1—O1—C6 | 0.5 (2) | N1i—Zr1—N2—C8i | 38.12 (17) |
N2—Zr1—O1—C6 | −138.4 (3) | N1—Zr1—N2—C8i | −141.88 (17) |
O3i—Zr1—O3—C7 | −59.3 (2) | C5—N1—C1—C2 | 0.3 (5) |
O1i—Zr1—O3—C7 | 166.3 (3) | Zr1—N1—C1—C2 | −179.3 (2) |
O1—Zr1—O3—C7 | 13.9 (3) | C5—N1—C1—C6 | 179.9 (3) |
O5—Zr1—O3—C7 | 82.4 (2) | Zr1—N1—C1—C6 | 0.4 (4) |
O5i—Zr1—O3—C7 | −131.8 (2) | N1—C1—C2—C3 | −1.2 (5) |
N1i—Zr1—O3—C7 | −123.4 (3) | C6—C1—C2—C3 | 179.2 (3) |
N1—Zr1—O3—C7 | 8.1 (2) | C1—C2—C3—C4 | 1.1 (5) |
N2—Zr1—O3—C7 | 120.7 (2) | C2—C3—C4—C5 | −0.2 (5) |
O3—Zr1—O5—C11 | 166.3 (3) | C1—N1—C5—C4 | 0.7 (5) |
O3i—Zr1—O5—C11 | −116.0 (3) | Zr1—N1—C5—C4 | −179.7 (2) |
O1i—Zr1—O5—C11 | 88.4 (3) | C1—N1—C5—C7 | −177.9 (3) |
O1—Zr1—O5—C11 | −56.4 (3) | Zr1—N1—C5—C7 | 1.7 (3) |
O5i—Zr1—O5—C11 | 15.4 (2) | C3—C4—C5—N1 | −0.7 (5) |
N1i—Zr1—O5—C11 | 127.9 (2) | C3—C4—C5—C7 | 177.7 (3) |
N1—Zr1—O5—C11 | −124.3 (3) | Zr1—O1—C6—O2 | 179.8 (3) |
N2—Zr1—O5—C11 | 15.4 (2) | Zr1—O1—C6—C1 | −0.4 (4) |
O3—Zr1—N1—C1 | 175.0 (3) | N1—C1—C6—O2 | 179.8 (3) |
O3i—Zr1—N1—C1 | −83.4 (2) | C2—C1—C6—O2 | −0.6 (5) |
O1i—Zr1—N1—C1 | 143.0 (2) | N1—C1—C6—O1 | 0.0 (4) |
O1—Zr1—N1—C1 | −0.4 (2) | C2—C1—C6—O1 | 179.7 (3) |
O5—Zr1—N1—C1 | 91.0 (2) | Zr1—O3—C7—O4 | 170.7 (2) |
O5i—Zr1—N1—C1 | −43.3 (3) | Zr1—O3—C7—C5 | −9.9 (4) |
N1i—Zr1—N1—C1 | −133.3 (3) | N1—C5—C7—O4 | −176.1 (3) |
N2—Zr1—N1—C1 | 46.7 (3) | C4—C5—C7—O4 | 5.4 (5) |
O3—Zr1—N1—C5 | −4.5 (2) | N1—C5—C7—O3 | 4.5 (4) |
O3i—Zr1—N1—C5 | 97.1 (2) | C4—C5—C7—O3 | −174.0 (3) |
O1i—Zr1—N1—C5 | −36.6 (3) | C8i—N2—C8—C9 | 0.9 (2) |
O1—Zr1—N1—C5 | −180.0 (3) | Zr1—N2—C8—C9 | −179.1 (2) |
O5—Zr1—N1—C5 | −88.5 (2) | C8i—N2—C8—C11 | −178.4 (3) |
O5i—Zr1—N1—C5 | 137.1 (2) | Zr1—N2—C8—C11 | 1.6 (3) |
N1i—Zr1—N1—C5 | 47.2 (2) | N2—C8—C9—C10 | −1.8 (5) |
N2—Zr1—N1—C5 | −132.8 (2) | C11—C8—C9—C10 | 177.4 (3) |
O3—Zr1—N2—C8 | −49.04 (17) | C8—C9—C10—C9i | 0.9 (2) |
O3i—Zr1—N2—C8 | 130.96 (17) | Zr1—O5—C11—O6 | 160.2 (3) |
O1i—Zr1—N2—C8 | −96.28 (17) | Zr1—O5—C11—C8 | −19.8 (4) |
O1—Zr1—N2—C8 | 83.72 (17) | N2—C8—C11—O6 | −169.6 (3) |
O5—Zr1—N2—C8 | −7.83 (17) | C9—C8—C11—O6 | 11.1 (5) |
O5i—Zr1—N2—C8 | 172.17 (17) | N2—C8—C11—O5 | 10.4 (4) |
N1i—Zr1—N2—C8 | −141.88 (17) | C9—C8—C11—O5 | −168.9 (3) |
N1—Zr1—N2—C8 | 38.12 (17) |
Symmetry code: (i) −x+1, y, −z+1/2. |
D—H···A | D—H | H···A | D···A | D—H···A |
N3—H3NA···O1 | 0.77 | 2.23 | 3.003 (4) | 175 |
N3—H3NB···O2Wi | 0.86 | 2.15 | 2.930 (4) | 150 |
N4—H4NA···O2Wi | 0.83 | 2.04 | 2.818 (4) | 156 |
N4—H4NB···O1Wii | 0.78 | 2.06 | 2.834 (4) | 175 |
N5—H5NA···O2 | 0.88 | 1.95 | 2.828 (4) | 171 |
N5—H5NB···O3iii | 0.79 | 2.45 | 3.143 (4) | 148 |
N5—H5NB···O4iii | 0.79 | 2.52 | 3.171 (4) | 141 |
O1W—H1WA···O3iv | 0.84 | 2.33 | 3.041 (3) | 143 |
O1W—H1WA···O5iv | 0.84 | 2.38 | 3.076 (3) | 140 |
O1W—H1WB···O6 | 0.89 | 1.87 | 2.761 (3) | 175 |
O2W—H2WA···O5iv | 0.86 | 2.07 | 2.909 (3) | 165 |
O2W—H2WA···O6iv | 0.86 | 2.57 | 3.085 (3) | 119 |
O2W—H2WB···O4v | 0.94 | 1.84 | 2.745 (3) | 160 |
Symmetry codes: (i) −x+1, y, −z+1/2; (ii) −x+1/2, −y+1/2, z+1/2; (iii) x−1/2, y−1/2, −z+1/2; (iv) −x+1, −y+1, −z; (v) x, y−1, z. |
Experimental details
Crystal data | |
Chemical formula | (CH6N3)2[Zr(C7H3NO4)3]·4H2O |
Mr | 778.77 |
Crystal system, space group | Orthorhombic, Pbcn |
Temperature (K) | 120 |
a, b, c (Å) | 17.2444 (9), 10.8583 (5), 16.5268 (8) |
V (Å3) | 3094.6 (3) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.45 |
Crystal size (mm) | 0.17 × 0.15 × 0.07 |
Data collection | |
Diffractometer | Bruker SMART 1000 CCD |
Absorption correction | Multi-scan (SADABS; Bruker, 1998) |
Tmin, Tmax | 0.884, 0.970 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 32229, 4116, 2884 |
Rint | 0.068 |
(sin θ/λ)max (Å−1) | 0.682 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.056, 0.146, 1.07 |
No. of reflections | 4116 |
No. of parameters | 223 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.87, −0.47 |
Computer programs: SMART (Bruker, 1998), SAINT (Bruker, 1998), SHELXTL (Sheldrick, 2008), DIAMOND (Brandenburg, 1999) and Mercury (Macrae et al., 2006).
D—H···A | D—H | H···A | D···A | D—H···A |
N3—H3NA···O1 | 0.77 | 2.23 | 3.003 (4) | 175 |
N3—H3NB···O2Wi | 0.86 | 2.15 | 2.930 (4) | 150 |
N4—H4NA···O2Wi | 0.83 | 2.04 | 2.818 (4) | 156 |
N4—H4NB···O1Wii | 0.78 | 2.06 | 2.834 (4) | 175 |
N5—H5NA···O2 | 0.88 | 1.95 | 2.828 (4) | 171 |
N5—H5NB···O3iii | 0.79 | 2.45 | 3.143 (4) | 148 |
N5—H5NB···O4iii | 0.79 | 2.52 | 3.171 (4) | 141 |
O1W—H1WA···O3iv | 0.84 | 2.33 | 3.041 (3) | 143 |
O1W—H1WA···O5iv | 0.84 | 2.38 | 3.076 (3) | 140 |
O1W—H1WB···O6 | 0.89 | 1.87 | 2.761 (3) | 175 |
O2W—H2WA···O5iv | 0.86 | 2.07 | 2.909 (3) | 165 |
O2W—H2WA···O6iv | 0.86 | 2.57 | 3.085 (3) | 119 |
O2W—H2WB···O4v | 0.94 | 1.84 | 2.745 (3) | 160 |
Symmetry codes: (i) −x+1, y, −z+1/2; (ii) −x+1/2, −y+1/2, z+1/2; (iii) x−1/2, y−1/2, −z+1/2; (iv) −x+1, −y+1, −z; (v) x, y−1, z. |
Acknowledgements
The authors wish to express their deepest appreciation to the late Professor Dr. H Aghabozorg who has inspired, advised and assisted during this study.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
In recent years, our research group has been interested in the synthesis of proton transfer compounds and study of their behavior with metal ions. We have focused on the proton delivery of polycarboxylic acids. Pyridine-2,6-dicarboxylic acid (pydcH2) is a very important carboxylate derivative and has attracted much interest in coordination chemistry. This is the acid we have utilized widely in our studies (Tabatabaee et al., 2010, 2011a, 2011b, 2011c, 2012; Derikvand et al., 2010; Attar Gharamaleki et al., 2009). In this paper we report the crystal structure of the title complex (I). The ZrIV ion lies on a twofold rotation axis. The asymmetric unit and the symmetry complete cation is shown in Fig. 1. The ZrIV atom is coordinated by three tridentate pydc ligands forming a slightly distorted tricapped trigonal prismatic environment (Fig. 2). The Zr—N distances and Zr—O distances are consistent with those found in (pydaH)2[Zr(pydc)3].5H2O (Aghabozorg et al., 2005). In the crystal, O—H···O and N—H···O hydrogen bonds (Table 1) link the components into a three-dimensional network (Fig. 3).