metal-organic compounds
Diaquabis(pyrazine-2-carboxamide-κ2N1,O)cobalt(II) dinitrate
aDepartment of Earth System Sciences, Yonsei University, Seoul 120-749, Republic of Korea
*Correspondence e-mail: YongjaeLee@yonsei.ac.kr
The 5H5N3O)2(H2O)2](NO3)2, contains one half of a CoII cationic unit and a nitrate anion. The entire [Co(C5H5N3O)2(H2O)2]2+ cationic unit is completed by the application of inversion symmetry at the CoII site, generating a six-coordinate distorted octahedral environment for the metal ion. The chelating pyrazine-2-carboxamide molecules are bound to cobalt via N and O atoms, forming a square plane, while the remaining two trans positions in the octahedron are occupied by two coordinated water molecules.
of the title complex, [Co(CRelated literature
For the monodentate coordination mode of the pyrazine-2-carboxamide ligand, see: Azhdari Tehrani et al. (2010); Mir Mohammad Sadegh et al. (2010); Goher & Mautner (1999, 2001). For the chelating bidentate coordination mode, see: Tanase et al. (2008); Prins et al. (2007); Sekisaki (1973). For coordination by pyrazine carboxamide moieties, see: Hausmann & Brooker (2004); Cati & Stoeckli-Evans (2004).
Experimental
Crystal data
|
Refinement
|
Data collection: CrystalClear (Rigaku, 2000); cell CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SIR92 (Altomare et al., 1993); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997); software used to prepare material for publication: WinGX (Farrugia, 1999).
Supporting information
10.1107/S1600536812012573/mw2053sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536812012573/mw2053Isup2.hkl
A solution of pyrazine-2-carboxamide (0.246 g, 2.0 mmol) in ethanol (10 ml) was added to a solution of cobalt(II) nitrate hexahydrate (0.291 g, 1.0 mmol) in water (5 ml) at room temperature. After stirring the resulting solution for 3–4 h, an orange colored solid had formed which was filtered off and dried. Orange crystals of the title complex were obtained by slow evaporation from acetonitrile solution over two weeks.
All non hydrogen atoms were refined anisotropically. The hydrogen atoms of the coordinated water molecules were located from the Fourier difference maps and included as riding contributions with O—H distances set to 0.82 Å with Uiso(H) = 1.2Ueq(O). All other H atoms were positioned geometrically with C–H = 0.93 and N—H = 0.86 Å and constrained to ride on their parent atoms, with Uiso(H) = 1.2Ueq(C,N).
The ligand pyrazine-2-carboxamide can coordinate to a metal center in a monodentate fashion through the pyrazine nitrogen atom which is meta to the carboxamide group. Alternatively, when the ligand uses both the carboxamide oxygen atom and the pyrazine nitrogen atom ortho to it for coordination, a stable five member ring is formed as a result of the ligand coordinating in chelating bidentate fashion.
In the present study we report the synthesis, molecular and
of an octahedral complex of CoII with the pyrazine-2-carboxamide ligand, [Co(C5H5N3O)2(H2O)2](NO3)2. The molecular structure of this complex is shown in Fig. 1. In this complex, the CoII atom lies on a center of inversion and adopts an octahedral geometry. Two pyrazine-2-carboxamide ligand molecules, each coordinating to the CoII center in a chelating bidentate fashion and forming a stable five membered ring, form a square planar arrangement around the metal center. The remaining two trans positions in the octahedron are occupied by two coordinated water molecules. The crystal packing is dominated by O—H···O hydrogen bonding interactions between the complex molecules and the nitrate ions present in the which leads to the formation of a two-dimensional sheet parallel to the bc plane (Fig. 2, Table 1).For the monodentate coordination mode of the pyrazine-2-carboxamide ligand, see: Azhdari Tehrani et al. (2010); Mir Mohammad Sadegh et al. (2010); Goher & Mautner (1999, 2001). For the chelating bidentate coordination mode, see: Tanase et al. (2008); Prins et al. (2007); Sekisaki (1973). For coordination by pyrazine carboxamide moieties, see: Hausmann & Brooker (2004); Cati & Stoeckli-Evans (2004).
Data collection: CrystalClear (Rigaku, 2000); cell
CrystalClear (Rigaku, 2000); data reduction: CrystalClear (Rigaku, 2000); program(s) used to solve structure: SIR92 (Altomare et al., 1993); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997); software used to prepare material for publication: WinGX (Farrugia, 1999).[Co(C5H5N3O)2(H2O)2](NO3)2 | F(000) = 474 |
Mr = 465.22 | Dx = 1.789 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71069 Å |
Hall symbol: -P 2ybc | Cell parameters from 62 reflections |
a = 10.149 (5) Å | θ = 1.6–30.1° |
b = 6.715 (3) Å | µ = 1.07 mm−1 |
c = 13.080 (5) Å | T = 295 K |
β = 104.397 (4)° | Block, orange |
V = 863.4 (7) Å3 | 0.2 × 0.18 × 0.18 mm |
Z = 2 |
Rigaku R-AXIS IV++ diffractometer | 1958 independent reflections |
Confocal monochromator | 1831 reflections with I > 2σ(I) |
Detector resolution: 10 pixels mm-1 | Rint = 0.023 |
φ scans | θmax = 30.1°, θmin = 1.6° |
Absorption correction: multi-scan (CrystalClear; Rigaku, 2000) | h = −13→14 |
Tmin = 0.815, Tmax = 0.831 | k = −7→9 |
4254 measured reflections | l = −13→18 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.033 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.097 | w = 1/[σ2(Fo2) + (0.0597P)2 + 0.1848P] where P = (Fo2 + 2Fc2)/3 |
S = 1.07 | (Δ/σ)max < 0.001 |
1958 reflections | Δρmax = 0.42 e Å−3 |
140 parameters | Δρmin = −0.55 e Å−3 |
2 restraints | Extinction correction: SHELXL |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.058 (5) |
[Co(C5H5N3O)2(H2O)2](NO3)2 | V = 863.4 (7) Å3 |
Mr = 465.22 | Z = 2 |
Monoclinic, P21/c | Mo Kα radiation |
a = 10.149 (5) Å | µ = 1.07 mm−1 |
b = 6.715 (3) Å | T = 295 K |
c = 13.080 (5) Å | 0.2 × 0.18 × 0.18 mm |
β = 104.397 (4)° |
Rigaku R-AXIS IV++ diffractometer | 1958 independent reflections |
Absorption correction: multi-scan (CrystalClear; Rigaku, 2000) | 1831 reflections with I > 2σ(I) |
Tmin = 0.815, Tmax = 0.831 | Rint = 0.023 |
4254 measured reflections |
R[F2 > 2σ(F2)] = 0.033 | 2 restraints |
wR(F2) = 0.097 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.07 | Δρmax = 0.42 e Å−3 |
1958 reflections | Δρmin = −0.55 e Å−3 |
140 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
C1 | −0.13028 (17) | 0.3679 (3) | 0.37319 (14) | 0.0252 (4) | |
H1 | −0.045 | 0.4279 | 0.3917 | 0.03* | |
C2 | −0.2368 (2) | 0.4620 (3) | 0.30214 (17) | 0.0312 (4) | |
H2 | −0.2209 | 0.5835 | 0.2733 | 0.037* | |
C3 | −0.38018 (17) | 0.2122 (3) | 0.32023 (14) | 0.0265 (4) | |
H3 | −0.4668 | 0.1565 | 0.305 | 0.032* | |
C4 | −0.27504 (15) | 0.1155 (2) | 0.38998 (12) | 0.0187 (3) | |
C5 | −0.28494 (16) | −0.0812 (3) | 0.44282 (13) | 0.0233 (4) | |
N1 | −0.14921 (13) | 0.1933 (2) | 0.41483 (10) | 0.0190 (3) | |
N2 | −0.36101 (16) | 0.3835 (3) | 0.27411 (13) | 0.0328 (4) | |
N3 | −0.40489 (16) | −0.1673 (3) | 0.42833 (14) | 0.0338 (4) | |
H3A | −0.4122 | −0.2795 | 0.4581 | 0.041* | |
H3B | −0.4758 | −0.1112 | 0.3891 | 0.041* | |
N4 | 0.73095 (19) | −0.0030 (2) | 0.13278 (13) | 0.0257 (4) | |
O1 | −0.17918 (12) | −0.1555 (2) | 0.49866 (11) | 0.0307 (3) | |
O2 | 0.67682 (16) | −0.1413 (2) | 0.16811 (14) | 0.0475 (4) | |
O3 | 0.67169 (18) | 0.0854 (3) | 0.05233 (14) | 0.0574 (5) | |
O4 | 0.85161 (15) | 0.0470 (2) | 0.18035 (12) | 0.0361 (3) | |
Co1 | 0 | 0 | 0.5 | 0.01880 (16) | |
O1W | 0.00264 (16) | −0.1345 (2) | 0.35909 (11) | 0.0400 (4) | |
H2W | 0.059 (2) | −0.215 (3) | 0.349 (2) | 0.048* | |
H1W | −0.045 (2) | −0.094 (4) | 0.3028 (11) | 0.048* |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0174 (8) | 0.0248 (9) | 0.0307 (9) | −0.0021 (6) | 0.0005 (7) | 0.0021 (6) |
C2 | 0.0257 (10) | 0.0232 (8) | 0.0405 (11) | 0.0023 (7) | −0.0002 (8) | 0.0086 (8) |
C3 | 0.0129 (8) | 0.0289 (9) | 0.0322 (9) | 0.0019 (6) | −0.0047 (7) | 0.0007 (7) |
C4 | 0.0136 (7) | 0.0203 (8) | 0.0204 (7) | 0.0010 (6) | 0.0008 (6) | −0.0017 (6) |
C5 | 0.0165 (8) | 0.0267 (9) | 0.0240 (8) | −0.0016 (7) | 0.0000 (6) | 0.0020 (6) |
N1 | 0.0124 (6) | 0.0228 (7) | 0.0194 (6) | 0.0017 (5) | −0.0008 (5) | 0.0004 (5) |
N2 | 0.0210 (8) | 0.0292 (8) | 0.0409 (9) | 0.0047 (6) | −0.0061 (7) | 0.0078 (6) |
N3 | 0.0166 (7) | 0.0363 (9) | 0.0426 (9) | −0.0074 (6) | −0.0040 (6) | 0.0115 (7) |
N4 | 0.0229 (9) | 0.0313 (9) | 0.0223 (8) | 0.0009 (5) | 0.0041 (7) | 0.0009 (5) |
O1 | 0.0150 (6) | 0.0337 (7) | 0.0383 (7) | −0.0011 (5) | −0.0027 (5) | 0.0143 (6) |
O2 | 0.0453 (9) | 0.0434 (9) | 0.0557 (10) | −0.0129 (7) | 0.0163 (8) | 0.0063 (7) |
O3 | 0.0407 (9) | 0.0808 (14) | 0.0426 (9) | 0.0083 (9) | −0.0048 (7) | 0.0283 (9) |
O4 | 0.0270 (8) | 0.0405 (8) | 0.0351 (8) | −0.0068 (6) | −0.0031 (6) | 0.0039 (6) |
Co1 | 0.0103 (2) | 0.0237 (2) | 0.0192 (2) | 0.00234 (10) | −0.00225 (14) | 0.00248 (10) |
O1W | 0.0415 (9) | 0.0490 (9) | 0.0237 (7) | 0.0229 (7) | −0.0031 (6) | −0.0045 (6) |
C1—N1 | 1.327 (2) | N3—H3A | 0.86 |
C1—C2 | 1.390 (3) | N3—H3B | 0.86 |
C1—H1 | 0.93 | N4—O2 | 1.226 (2) |
C2—N2 | 1.330 (3) | N4—O3 | 1.227 (2) |
C2—H2 | 0.93 | N4—O4 | 1.273 (2) |
C3—N2 | 1.335 (3) | O1—Co1 | 2.0934 (14) |
C3—C4 | 1.382 (2) | Co1—O1W | 2.0586 (15) |
C3—H3 | 0.93 | Co1—O1Wi | 2.0586 (15) |
C4—N1 | 1.343 (2) | Co1—O1i | 2.0934 (14) |
C4—C5 | 1.505 (2) | Co1—N1i | 2.0931 (14) |
C5—O1 | 1.243 (2) | O1W—H2W | 0.820 (2) |
C5—N3 | 1.318 (2) | O1W—H1W | 0.820 (2) |
N1—Co1 | 2.0931 (14) | ||
N1—C1—C2 | 120.52 (16) | O2—N4—O3 | 121.3 (2) |
N1—C1—H1 | 119.7 | O2—N4—O4 | 118.83 (18) |
C2—C1—H1 | 119.7 | O3—N4—O4 | 119.88 (17) |
N2—C2—C1 | 122.04 (18) | C5—O1—Co1 | 115.20 (11) |
N2—C2—H2 | 119 | O1W—Co1—O1Wi | 180 |
C1—C2—H2 | 119 | O1W—Co1—O1i | 91.24 (7) |
N2—C3—C4 | 121.87 (16) | O1Wi—Co1—O1i | 88.76 (7) |
N2—C3—H3 | 119.1 | O1W—Co1—O1 | 88.76 (7) |
C4—C3—H3 | 119.1 | O1Wi—Co1—O1 | 91.24 (7) |
N1—C4—C3 | 120.57 (15) | O1i—Co1—O1 | 180 |
N1—C4—C5 | 113.48 (13) | O1W—Co1—N1 | 87.95 (6) |
C3—C4—C5 | 125.94 (15) | O1Wi—Co1—N1 | 92.05 (6) |
O1—C5—N3 | 122.68 (17) | O1i—Co1—N1 | 101.95 (6) |
O1—C5—C4 | 118.41 (14) | O1—Co1—N1 | 78.05 (6) |
N3—C5—C4 | 118.91 (15) | O1W—Co1—N1i | 92.05 (6) |
C1—N1—C4 | 118.09 (14) | O1Wi—Co1—N1i | 87.95 (6) |
C1—N1—Co1 | 127.39 (11) | O1i—Co1—N1i | 78.05 (6) |
C4—N1—Co1 | 113.95 (11) | O1—Co1—N1i | 101.95 (6) |
C2—N2—C3 | 116.81 (16) | N1—Co1—N1i | 180 |
C5—N3—H3A | 120 | Co1—O1W—H2W | 127 (2) |
C5—N3—H3B | 120 | Co1—O1W—H1W | 122 (2) |
H3A—N3—H3B | 120 | H2W—O1W—H1W | 110 (3) |
N1—C1—C2—N2 | 0.8 (3) | N3—C5—O1—Co1 | 175.70 (14) |
N2—C3—C4—N1 | 0.9 (3) | C4—C5—O1—Co1 | −4.4 (2) |
N2—C3—C4—C5 | −177.61 (17) | C5—O1—Co1—O1W | −81.16 (14) |
N1—C4—C5—O1 | −3.1 (2) | C5—O1—Co1—O1Wi | 98.84 (14) |
C3—C4—C5—O1 | 175.52 (17) | C5—O1—Co1—N1 | 7.01 (13) |
N1—C4—C5—N3 | 176.79 (15) | C5—O1—Co1—N1i | −172.99 (13) |
C3—C4—C5—N3 | −4.6 (3) | C1—N1—Co1—O1W | −90.46 (15) |
C2—C1—N1—C4 | −2.9 (2) | C4—N1—Co1—O1W | 80.57 (12) |
C2—C1—N1—Co1 | 167.77 (14) | C1—N1—Co1—O1Wi | 89.54 (15) |
C3—C4—N1—C1 | 2.1 (2) | C4—N1—Co1—O1Wi | −99.43 (12) |
C5—C4—N1—C1 | −179.19 (14) | C1—N1—Co1—O1i | 0.38 (15) |
C3—C4—N1—Co1 | −169.81 (13) | C4—N1—Co1—O1i | 171.41 (11) |
C5—C4—N1—Co1 | 8.89 (17) | C1—N1—Co1—O1 | −179.62 (15) |
C1—C2—N2—C3 | 2.2 (3) | C4—N1—Co1—O1 | −8.60 (11) |
C4—C3—N2—C2 | −3.0 (3) |
Symmetry code: (i) −x, −y, −z+1. |
D—H···A | D—H | H···A | D···A | D—H···A |
O1W—H1W···O4ii | 0.82 (1) | 1.93 (1) | 2.742 (2) | 170 (3) |
O1W—H2W···O4iii | 0.82 (1) | 1.92 (1) | 2.722 (2) | 164 (3) |
Symmetry codes: (ii) x−1, y, z; (iii) −x+1, y−1/2, −z+1/2. |
Experimental details
Crystal data | |
Chemical formula | [Co(C5H5N3O)2(H2O)2](NO3)2 |
Mr | 465.22 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 295 |
a, b, c (Å) | 10.149 (5), 6.715 (3), 13.080 (5) |
β (°) | 104.397 (4) |
V (Å3) | 863.4 (7) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 1.07 |
Crystal size (mm) | 0.2 × 0.18 × 0.18 |
Data collection | |
Diffractometer | Rigaku R-AXIS IV++ |
Absorption correction | Multi-scan (CrystalClear; Rigaku, 2000) |
Tmin, Tmax | 0.815, 0.831 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 4254, 1958, 1831 |
Rint | 0.023 |
(sin θ/λ)max (Å−1) | 0.705 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.033, 0.097, 1.07 |
No. of reflections | 1958 |
No. of parameters | 140 |
No. of restraints | 2 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.42, −0.55 |
Computer programs: CrystalClear (Rigaku, 2000), SIR92 (Altomare et al., 1993), SHELXL97 (Sheldrick, 2008), ORTEP-3 (Farrugia, 1997), WinGX (Farrugia, 1999).
D—H···A | D—H | H···A | D···A | D—H···A |
O1W—H1W···O4i | 0.820 (2) | 1.931 (6) | 2.742 (2) | 170 (3) |
O1W—H2W···O4ii | 0.820 (2) | 1.924 (8) | 2.722 (2) | 164 (3) |
Symmetry codes: (i) x−1, y, z; (ii) −x+1, y−1/2, −z+1/2. |
Acknowledgements
APSP and YL are thankful to the Industry Academic Cooperation Foundation (IACF), Yonsei University, Seoul, Korea, for financial support. YL is also thankful for the support by the Global Research Laboratory program of the Korean Ministry of Education, Science and Technology, which contributed for the installation of VariMAX/R-Axis IV++/DAC XRD system used in this study.
References
Altomare, A., Cascarano, G., Giacovazzo, C. & Guagliardi, A. (1993). J. Appl. Cryst. 26, 343–350. CrossRef Web of Science IUCr Journals Google Scholar
Azhdari Tehrani, A., Mir Mohammad Sadegh, B. & Khavasi, H. R. (2010). Acta Cryst. E66, m261. Web of Science CSD CrossRef IUCr Journals Google Scholar
Cati, D. S. & Stoeckli-Evans, H. (2004). Acta Cryst. E60, m177–m179. Web of Science CSD CrossRef IUCr Journals Google Scholar
Farrugia, L. J. (1997). J. Appl. Cryst. 30, 565. CrossRef IUCr Journals Google Scholar
Farrugia, L. J. (1999). J. Appl. Cryst. 32, 837–838. CrossRef CAS IUCr Journals Google Scholar
Goher, M. A. S. & Mautner, F. A. (1999). J. Chem. Soc. Dalton Trans. pp. 1535–1536. Web of Science CSD CrossRef Google Scholar
Goher, M. A. S. & Mautner, F. A. (2001). J. Coord. Chem. 53, 79–89. Web of Science CrossRef CAS Google Scholar
Hausmann, J. & Brooker, S. (2004). Chem. Commun. pp. 1530–1531. Web of Science CSD CrossRef Google Scholar
Mir Mohammad Sadegh, B., Azhdari Tehrani, A. & Khavasi, H. R. (2010). Acta Cryst. E66, m158. Web of Science CSD CrossRef IUCr Journals Google Scholar
Prins, F., Pasca, E., de Jongh, L. J., Kooijman, H., Spek, A. L. & Tanase, S. (2007). Angew. Chem. Int. Ed. 46, 6081–6084. Web of Science CSD CrossRef CAS Google Scholar
Rigaku (2000). CrystalClear. Rigaku Corporation, Tokyo, Japan. Google Scholar
Sekisaki, M. (1973). Acta Cryst. B29, 327–331. CSD CrossRef IUCr Journals Web of Science Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Tanase, S., Evangelisti, M., de Jongh, L. J., Smits, J. M. M. & de Gelder, R. (2008). Inorg. Chim. Acta, 361, 3548–3554. Web of Science CSD CrossRef CAS Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
The ligand pyrazine-2-carboxamide can coordinate to a metal center in a monodentate fashion through the pyrazine nitrogen atom which is meta to the carboxamide group. Alternatively, when the ligand uses both the carboxamide oxygen atom and the pyrazine nitrogen atom ortho to it for coordination, a stable five member ring is formed as a result of the ligand coordinating in chelating bidentate fashion.
In the present study we report the synthesis, molecular and crystal structure of an octahedral complex of CoII with the pyrazine-2-carboxamide ligand, [Co(C5H5N3O)2(H2O)2](NO3)2. The molecular structure of this complex is shown in Fig. 1. In this complex, the CoII atom lies on a center of inversion and adopts an octahedral geometry. Two pyrazine-2-carboxamide ligand molecules, each coordinating to the CoII center in a chelating bidentate fashion and forming a stable five membered ring, form a square planar arrangement around the metal center. The remaining two trans positions in the octahedron are occupied by two coordinated water molecules. The crystal packing is dominated by O—H···O hydrogen bonding interactions between the complex molecules and the nitrate ions present in the crystal lattice which leads to the formation of a two-dimensional sheet parallel to the bc plane (Fig. 2, Table 1).