organic compounds
Ethyl 7-methyl-3-oxo-5-phenyl-2-(2,4,6-trimethoxybenzylidene)-2,3-dihydro-5H-thiazolo[3,2-a]pyrimidine-6-carboxylate
aDepartment of Chemistry, KNS Institute of Technology, Bangalore 560 064, India, and bDepartment of Chemistry, Dr Ambedkar Institute of Technology, Bangalore 560 056, India
*Correspondence e-mail: bheemarajuv54@gmail.com
In the title compound, C26H26N2O6S, the benzene ring is positioned axially to the thiazolopyrimidine ring and bisects it with a dihedral angle of 80.94 (7)°. The pyrimidine ring adopts a flattened boat conformation. In the crystal, pairs of bifurcated C—H⋯O hydrogen bonds link the molecules into chains along the c axis.
Related literature
For the pharmacological activity of pyrimidine derivatives, see: Alam et al. (2010). For a related see: Chen et al. (2012).
Experimental
Crystal data
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Refinement
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Data collection: SMART (Bruker, 1998); cell SAINT-Plus (Bruker, 1998); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997) and CAMERON (Watkin et al., 1996); software used to prepare material for publication: WinGX (Farrugia, 1999).
Supporting information
10.1107/S1600536812012354/pv2518sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536812012354/pv2518Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536812012354/pv2518Isup3.cml
A mixture of 5-phenyl-6-methyl-2-thioxo-1,2,3,4-tetrahydro -pyrimidine-5-carboxylic acid ethyl ester (0.01 mol, 2.76 g), chloroaceticacid (0.01 mol, 0.94 g), 2,4,6-trimethoxy benzaldehyde (0.01 mol, 1.96 g) and sodium acetate (1.5 g) in a mixture of glacial acetic acid and acetic anhydride (25 ml, 1:1) was refluxed for 8–10 h. The reaction mixture was concentrated and the solid thus obtained was filtered and recrystallized from ethyl acetate to get the title compound (78% yield, mp 427–428 K). The compound was recrystallized by slow evaporation of an ethyl acetate-ethanol (3:2) solution, yielding pale yellow single crystals suitable for X-ray diffraction studies.
The H atoms were placed at calculated positions in the riding model approximation with C—H = 0.93, 0.96 and 0.98 Å for aryl, methyl and methylene H-atoms, respectively, with Uiso(H) = 1.2–1.5Ueq(C).
Pyrimidine derivatives are of interest because of their pharmacological properties (Alam et al., 2010). In the title compound (Fig. 1), the central pyrimidine ring with a chiral C5 atom is significantly puckered and adopts conformation as seen earlier (Chen et al., 2012). The atom C5 deviates from the mean plane formed by the atoms N2/C9/N1/C6/C7 by 0.224 (2) Å, indicating that the conformation of the ring is that of a flattened boat. In the molecule, the fused thiazolopyrimidine ring makes a dihedral angle of 80.94 (7)° with the benzene ring (C11–C16). In the crystal, pairs of C—H···O hydrogen bonds are bifurcated linking the molecules into chains along c-axis (Fig. 2 and Table 1).
For the pharmacological activity of pyrimidine derivatives, see: Alam et al. (2010). For a related
see: Chen et al. (2012).Data collection: SMART (Bruker, 1998); cell
SMART (Bruker, 1998); data reduction: SAINT-Plus (Bruker, 1998); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997) and CAMERON (Watkin et al., 1996); software used to prepare material for publication: WinGX (Farrugia, 1999).C26H26N2O6S | F(000) = 1040 |
Mr = 494.55 | Dx = 1.417 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2yn | Cell parameters from 5055 reflections |
a = 7.5363 (19) Å | θ = 2.2–27.0° |
b = 18.178 (5) Å | µ = 0.19 mm−1 |
c = 16.973 (4) Å | T = 296 K |
β = 94.465 (5)° | Block, yellow |
V = 2318.1 (10) Å3 | 0.18 × 0.16 × 0.16 mm |
Z = 4 |
Bruker SMART APEX CCD detector diffractometer | 5055 independent reflections |
Radiation source: fine-focus sealed tube | 3500 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.052 |
ω scans | θmax = 27.0°, θmin = 2.2° |
Absorption correction: multi-scan (SADABS; Bruker, 1998) | h = −9→6 |
Tmin = 0.967, Tmax = 0.971 | k = −19→23 |
13918 measured reflections | l = −21→20 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.058 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.168 | H-atom parameters constrained |
S = 1.07 | w = 1/[σ2(Fo2) + (0.0854P)2] where P = (Fo2 + 2Fc2)/3 |
5055 reflections | (Δ/σ)max = 0.001 |
321 parameters | Δρmax = 0.59 e Å−3 |
0 restraints | Δρmin = −0.38 e Å−3 |
C26H26N2O6S | V = 2318.1 (10) Å3 |
Mr = 494.55 | Z = 4 |
Monoclinic, P21/n | Mo Kα radiation |
a = 7.5363 (19) Å | µ = 0.19 mm−1 |
b = 18.178 (5) Å | T = 296 K |
c = 16.973 (4) Å | 0.18 × 0.16 × 0.16 mm |
β = 94.465 (5)° |
Bruker SMART APEX CCD detector diffractometer | 5055 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 1998) | 3500 reflections with I > 2σ(I) |
Tmin = 0.967, Tmax = 0.971 | Rint = 0.052 |
13918 measured reflections |
R[F2 > 2σ(F2)] = 0.058 | 0 restraints |
wR(F2) = 0.168 | H-atom parameters constrained |
S = 1.07 | Δρmax = 0.59 e Å−3 |
5055 reflections | Δρmin = −0.38 e Å−3 |
321 parameters |
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
S1 | 0.73105 (9) | 0.14251 (3) | 0.58179 (4) | 0.02186 (19) | |
O5 | −0.0478 (3) | 0.28751 (10) | 0.67802 (11) | 0.0280 (5) | |
O2 | 1.1137 (2) | 0.27911 (9) | 0.35791 (11) | 0.0259 (5) | |
O4 | 1.0502 (2) | 0.09339 (9) | 0.54509 (10) | 0.0250 (4) | |
N1 | 0.4401 (3) | 0.16361 (12) | 0.65853 (12) | 0.0224 (5) | |
O1 | 0.6191 (2) | 0.32009 (9) | 0.46396 (11) | 0.0252 (4) | |
O6 | 0.0574 (2) | 0.36348 (10) | 0.58753 (12) | 0.0285 (5) | |
N2 | 0.5119 (3) | 0.25231 (11) | 0.56348 (12) | 0.0209 (5) | |
O3 | 1.5463 (3) | 0.08397 (10) | 0.39073 (11) | 0.0276 (5) | |
C16 | 0.5164 (3) | 0.36754 (14) | 0.69908 (15) | 0.0218 (6) | |
H16 | 0.5270 | 0.3219 | 0.7237 | 0.026* | |
C11 | 0.4425 (3) | 0.37259 (14) | 0.62157 (15) | 0.0195 (6) | |
C6 | 0.2376 (4) | 0.26532 (14) | 0.62849 (15) | 0.0220 (6) | |
C10 | 0.0685 (4) | 0.30403 (14) | 0.63572 (16) | 0.0237 (6) | |
C20 | 1.3047 (4) | 0.08844 (14) | 0.46749 (15) | 0.0221 (6) | |
H20 | 1.3473 | 0.0459 | 0.4929 | 0.027* | |
C9 | 0.5401 (4) | 0.18888 (13) | 0.60625 (15) | 0.0207 (6) | |
C17 | 0.9132 (3) | 0.22160 (13) | 0.46628 (15) | 0.0201 (6) | |
H17 | 0.8968 | 0.2644 | 0.4365 | 0.024* | |
C7 | 0.2822 (4) | 0.20292 (14) | 0.66861 (15) | 0.0221 (6) | |
C2 | 0.7777 (3) | 0.21079 (13) | 0.51239 (15) | 0.0209 (6) | |
C5 | 0.3682 (3) | 0.30400 (13) | 0.57885 (16) | 0.0214 (6) | |
H5 | 0.3062 | 0.3186 | 0.5284 | 0.026* | |
C3 | 0.6336 (4) | 0.26750 (14) | 0.50774 (15) | 0.0218 (6) | |
C18 | 1.0776 (3) | 0.18488 (13) | 0.45027 (15) | 0.0204 (6) | |
C21 | 1.3967 (3) | 0.12094 (14) | 0.40848 (15) | 0.0220 (6) | |
C8 | 0.1730 (4) | 0.16755 (15) | 0.72924 (16) | 0.0288 (7) | |
H8A | 0.1686 | 0.1997 | 0.7739 | 0.043* | |
H8B | 0.2265 | 0.1217 | 0.7460 | 0.043* | |
H8C | 0.0544 | 0.1588 | 0.7063 | 0.043* | |
C19 | 1.1482 (4) | 0.12100 (14) | 0.48744 (14) | 0.0206 (6) | |
C15 | 0.5743 (4) | 0.43039 (14) | 0.73975 (16) | 0.0236 (6) | |
H15 | 0.6251 | 0.4268 | 0.7913 | 0.028* | |
C12 | 0.4283 (4) | 0.44127 (14) | 0.58605 (16) | 0.0242 (6) | |
H12 | 0.3805 | 0.4452 | 0.5340 | 0.029* | |
C22 | 1.3384 (3) | 0.18520 (14) | 0.37125 (15) | 0.0213 (6) | |
H22 | 1.4033 | 0.2070 | 0.3331 | 0.026* | |
C13 | 0.4841 (4) | 0.50407 (14) | 0.62696 (17) | 0.0261 (6) | |
H13 | 0.4728 | 0.5499 | 0.6027 | 0.031* | |
C23 | 1.1808 (4) | 0.21644 (13) | 0.39216 (15) | 0.0216 (6) | |
C25 | 1.6375 (4) | 0.11104 (16) | 0.32485 (17) | 0.0328 (7) | |
H25A | 1.5561 | 0.1127 | 0.2785 | 0.049* | |
H25B | 1.7348 | 0.0789 | 0.3157 | 0.049* | |
H25C | 1.6822 | 0.1596 | 0.3366 | 0.049* | |
C14 | 0.5563 (4) | 0.49832 (14) | 0.70364 (16) | 0.0247 (6) | |
H14 | 0.5934 | 0.5404 | 0.7313 | 0.030* | |
C26 | 1.1201 (4) | 0.03154 (14) | 0.58899 (15) | 0.0255 (6) | |
H26A | 1.1362 | −0.0087 | 0.5536 | 0.038* | |
H26B | 1.0386 | 0.0173 | 0.6270 | 0.038* | |
H26C | 1.2325 | 0.0444 | 0.6159 | 0.038* | |
C24 | 1.2289 (4) | 0.32127 (14) | 0.31204 (16) | 0.0267 (6) | |
H24A | 1.3356 | 0.3335 | 0.3440 | 0.040* | |
H24B | 1.1695 | 0.3657 | 0.2942 | 0.040* | |
H24C | 1.2587 | 0.2929 | 0.2672 | 0.040* | |
C1 | −0.0260 (4) | 0.48913 (16) | 0.6104 (2) | 0.0390 (8) | |
H1A | 0.0262 | 0.4898 | 0.6638 | 0.059* | |
H1B | −0.1234 | 0.5233 | 0.6052 | 0.059* | |
H1C | 0.0620 | 0.5030 | 0.5752 | 0.059* | |
C4 | −0.0928 (4) | 0.41300 (15) | 0.59001 (19) | 0.0325 (7) | |
H4A | −0.1703 | 0.3963 | 0.6294 | 0.039* | |
H4B | −0.1606 | 0.4136 | 0.5390 | 0.039* |
U11 | U22 | U33 | U12 | U13 | U23 | |
S1 | 0.0216 (4) | 0.0219 (4) | 0.0231 (4) | −0.0004 (3) | 0.0078 (3) | 0.0010 (3) |
O5 | 0.0244 (11) | 0.0318 (11) | 0.0296 (11) | −0.0015 (9) | 0.0135 (9) | −0.0016 (8) |
O2 | 0.0233 (11) | 0.0237 (10) | 0.0322 (11) | 0.0035 (8) | 0.0118 (8) | 0.0075 (8) |
O4 | 0.0284 (11) | 0.0222 (10) | 0.0262 (10) | 0.0018 (8) | 0.0128 (8) | 0.0051 (7) |
N1 | 0.0211 (13) | 0.0240 (11) | 0.0229 (12) | −0.0026 (10) | 0.0072 (10) | −0.0004 (9) |
O1 | 0.0235 (11) | 0.0232 (10) | 0.0299 (11) | 0.0014 (8) | 0.0095 (8) | 0.0031 (8) |
O6 | 0.0181 (10) | 0.0291 (10) | 0.0396 (12) | 0.0037 (8) | 0.0111 (9) | 0.0051 (8) |
N2 | 0.0177 (12) | 0.0211 (11) | 0.0250 (12) | −0.0024 (9) | 0.0081 (9) | −0.0007 (9) |
O3 | 0.0245 (11) | 0.0334 (11) | 0.0265 (10) | 0.0095 (9) | 0.0123 (8) | 0.0050 (8) |
C16 | 0.0200 (14) | 0.0208 (13) | 0.0256 (14) | 0.0003 (11) | 0.0082 (11) | 0.0020 (10) |
C11 | 0.0128 (13) | 0.0232 (13) | 0.0239 (14) | −0.0011 (10) | 0.0098 (11) | −0.0023 (10) |
C6 | 0.0184 (14) | 0.0207 (13) | 0.0275 (14) | −0.0013 (11) | 0.0064 (11) | −0.0046 (11) |
C10 | 0.0211 (15) | 0.0229 (14) | 0.0277 (15) | −0.0056 (11) | 0.0059 (12) | −0.0064 (11) |
C20 | 0.0225 (15) | 0.0243 (13) | 0.0196 (13) | 0.0023 (11) | 0.0016 (11) | 0.0010 (10) |
C9 | 0.0201 (14) | 0.0191 (13) | 0.0232 (14) | −0.0026 (11) | 0.0038 (11) | −0.0048 (10) |
C17 | 0.0221 (15) | 0.0196 (13) | 0.0194 (13) | −0.0020 (11) | 0.0062 (11) | −0.0012 (10) |
C7 | 0.0189 (14) | 0.0244 (14) | 0.0237 (14) | −0.0079 (11) | 0.0065 (11) | −0.0064 (11) |
C2 | 0.0201 (14) | 0.0184 (13) | 0.0246 (14) | −0.0011 (11) | 0.0050 (11) | −0.0018 (10) |
C5 | 0.0159 (14) | 0.0240 (13) | 0.0251 (14) | 0.0008 (11) | 0.0072 (11) | −0.0012 (11) |
C3 | 0.0207 (15) | 0.0243 (14) | 0.0211 (14) | −0.0032 (11) | 0.0066 (11) | −0.0026 (11) |
C18 | 0.0190 (14) | 0.0204 (13) | 0.0227 (14) | −0.0009 (11) | 0.0069 (11) | −0.0019 (10) |
C21 | 0.0173 (14) | 0.0273 (14) | 0.0215 (13) | 0.0023 (11) | 0.0029 (11) | −0.0024 (11) |
C8 | 0.0292 (17) | 0.0258 (14) | 0.0334 (16) | −0.0049 (12) | 0.0143 (13) | −0.0007 (12) |
C19 | 0.0215 (14) | 0.0233 (13) | 0.0177 (13) | −0.0036 (11) | 0.0064 (11) | −0.0015 (10) |
C15 | 0.0204 (14) | 0.0284 (14) | 0.0228 (14) | 0.0002 (12) | 0.0060 (11) | −0.0034 (11) |
C12 | 0.0212 (15) | 0.0286 (14) | 0.0234 (14) | 0.0015 (11) | 0.0057 (11) | 0.0042 (11) |
C22 | 0.0173 (14) | 0.0282 (14) | 0.0191 (13) | −0.0023 (11) | 0.0059 (11) | −0.0022 (10) |
C13 | 0.0258 (16) | 0.0161 (13) | 0.0376 (17) | 0.0012 (11) | 0.0095 (13) | 0.0043 (11) |
C23 | 0.0215 (15) | 0.0187 (13) | 0.0252 (14) | −0.0018 (11) | 0.0051 (11) | −0.0014 (10) |
C25 | 0.0297 (17) | 0.0396 (17) | 0.0311 (16) | 0.0119 (14) | 0.0146 (13) | 0.0078 (13) |
C14 | 0.0207 (15) | 0.0222 (14) | 0.0323 (15) | −0.0028 (11) | 0.0096 (12) | −0.0053 (11) |
C26 | 0.0276 (16) | 0.0230 (14) | 0.0265 (15) | 0.0008 (12) | 0.0063 (12) | 0.0031 (11) |
C24 | 0.0296 (16) | 0.0240 (14) | 0.0276 (15) | −0.0031 (12) | 0.0091 (13) | 0.0065 (11) |
C1 | 0.0296 (18) | 0.0357 (17) | 0.053 (2) | 0.0054 (14) | 0.0103 (15) | 0.0013 (15) |
C4 | 0.0186 (15) | 0.0355 (16) | 0.0447 (18) | 0.0046 (13) | 0.0103 (13) | 0.0040 (13) |
S1—C9 | 1.745 (3) | C2—C3 | 1.495 (4) |
S1—C2 | 1.765 (3) | C5—H5 | 0.9800 |
O5—C10 | 1.213 (3) | C18—C19 | 1.406 (4) |
O2—C23 | 1.359 (3) | C18—C23 | 1.423 (3) |
O2—C24 | 1.433 (3) | C21—C22 | 1.383 (4) |
O4—C19 | 1.367 (3) | C8—H8A | 0.9600 |
O4—C26 | 1.427 (3) | C8—H8B | 0.9600 |
N1—C9 | 1.292 (3) | C8—H8C | 0.9600 |
N1—C7 | 1.410 (3) | C15—C14 | 1.381 (4) |
O1—C3 | 1.211 (3) | C15—H15 | 0.9300 |
O6—C10 | 1.354 (3) | C12—C13 | 1.385 (4) |
O6—C4 | 1.449 (3) | C12—H12 | 0.9300 |
N2—C9 | 1.370 (3) | C22—C23 | 1.387 (3) |
N2—C3 | 1.395 (3) | C22—H22 | 0.9300 |
N2—C5 | 1.473 (3) | C13—C14 | 1.375 (4) |
O3—C21 | 1.367 (3) | C13—H13 | 0.9300 |
O3—C25 | 1.443 (3) | C25—H25A | 0.9600 |
C16—C15 | 1.387 (4) | C25—H25B | 0.9600 |
C16—C11 | 1.391 (4) | C25—H25C | 0.9600 |
C16—H16 | 0.9300 | C14—H14 | 0.9300 |
C11—C12 | 1.387 (3) | C26—H26A | 0.9600 |
C11—C5 | 1.527 (3) | C26—H26B | 0.9600 |
C6—C7 | 1.352 (4) | C26—H26C | 0.9600 |
C6—C10 | 1.469 (4) | C24—H24A | 0.9600 |
C6—C5 | 1.517 (3) | C24—H24B | 0.9600 |
C20—C19 | 1.385 (3) | C24—H24C | 0.9600 |
C20—C21 | 1.393 (3) | C1—C4 | 1.504 (4) |
C20—H20 | 0.9300 | C1—H1A | 0.9600 |
C17—C2 | 1.348 (3) | C1—H1B | 0.9600 |
C17—C18 | 1.451 (3) | C1—H1C | 0.9600 |
C17—H17 | 0.9300 | C4—H4A | 0.9700 |
C7—C8 | 1.511 (3) | C4—H4B | 0.9700 |
C9—S1—C2 | 91.72 (12) | C7—C8—H8C | 109.5 |
C23—O2—C24 | 117.4 (2) | H8A—C8—H8C | 109.5 |
C19—O4—C26 | 117.7 (2) | H8B—C8—H8C | 109.5 |
C9—N1—C7 | 116.5 (2) | O4—C19—C20 | 122.4 (2) |
C10—O6—C4 | 119.3 (2) | O4—C19—C18 | 114.7 (2) |
C9—N2—C3 | 116.3 (2) | C20—C19—C18 | 122.9 (2) |
C9—N2—C5 | 121.9 (2) | C14—C15—C16 | 120.0 (3) |
C3—N2—C5 | 121.7 (2) | C14—C15—H15 | 120.0 |
C21—O3—C25 | 117.0 (2) | C16—C15—H15 | 120.0 |
C15—C16—C11 | 120.2 (2) | C13—C12—C11 | 120.9 (3) |
C15—C16—H16 | 119.9 | C13—C12—H12 | 119.5 |
C11—C16—H16 | 119.9 | C11—C12—H12 | 119.5 |
C12—C11—C16 | 118.8 (2) | C21—C22—C23 | 118.5 (2) |
C12—C11—C5 | 121.0 (2) | C21—C22—H22 | 120.8 |
C16—C11—C5 | 120.0 (2) | C23—C22—H22 | 120.8 |
C7—C6—C10 | 122.9 (2) | C14—C13—C12 | 119.6 (2) |
C7—C6—C5 | 121.5 (2) | C14—C13—H13 | 120.2 |
C10—C6—C5 | 115.4 (2) | C12—C13—H13 | 120.2 |
O5—C10—O6 | 122.8 (2) | O2—C23—C22 | 122.1 (2) |
O5—C10—C6 | 127.0 (3) | O2—C23—C18 | 115.4 (2) |
O6—C10—C6 | 110.2 (2) | C22—C23—C18 | 122.5 (2) |
C19—C20—C21 | 118.4 (2) | O3—C25—H25A | 109.5 |
C19—C20—H20 | 120.8 | O3—C25—H25B | 109.5 |
C21—C20—H20 | 120.8 | H25A—C25—H25B | 109.5 |
N1—C9—N2 | 126.0 (2) | O3—C25—H25C | 109.5 |
N1—C9—S1 | 121.8 (2) | H25A—C25—H25C | 109.5 |
N2—C9—S1 | 112.16 (18) | H25B—C25—H25C | 109.5 |
C2—C17—C18 | 137.5 (2) | C13—C14—C15 | 120.4 (2) |
C2—C17—H17 | 111.2 | C13—C14—H14 | 119.8 |
C18—C17—H17 | 111.2 | C15—C14—H14 | 119.8 |
C6—C7—N1 | 122.9 (2) | O4—C26—H26A | 109.5 |
C6—C7—C8 | 124.9 (2) | O4—C26—H26B | 109.5 |
N1—C7—C8 | 112.1 (2) | H26A—C26—H26B | 109.5 |
C17—C2—C3 | 116.7 (2) | O4—C26—H26C | 109.5 |
C17—C2—S1 | 133.6 (2) | H26A—C26—H26C | 109.5 |
C3—C2—S1 | 109.77 (18) | H26B—C26—H26C | 109.5 |
N2—C5—C6 | 108.7 (2) | O2—C24—H24A | 109.5 |
N2—C5—C11 | 110.9 (2) | O2—C24—H24B | 109.5 |
C6—C5—C11 | 110.2 (2) | H24A—C24—H24B | 109.5 |
N2—C5—H5 | 109.0 | O2—C24—H24C | 109.5 |
C6—C5—H5 | 109.0 | H24A—C24—H24C | 109.5 |
C11—C5—H5 | 109.0 | H24B—C24—H24C | 109.5 |
O1—C3—N2 | 122.7 (2) | C4—C1—H1A | 109.5 |
O1—C3—C2 | 127.4 (2) | C4—C1—H1B | 109.5 |
N2—C3—C2 | 109.9 (2) | H1A—C1—H1B | 109.5 |
C19—C18—C23 | 115.8 (2) | C4—C1—H1C | 109.5 |
C19—C18—C17 | 126.5 (2) | H1A—C1—H1C | 109.5 |
C23—C18—C17 | 117.7 (2) | H1B—C1—H1C | 109.5 |
O3—C21—C22 | 123.6 (2) | O6—C4—C1 | 109.3 (2) |
O3—C21—C20 | 114.5 (2) | O6—C4—H4A | 109.8 |
C22—C21—C20 | 121.9 (2) | C1—C4—H4A | 109.8 |
C7—C8—H8A | 109.5 | O6—C4—H4B | 109.8 |
C7—C8—H8B | 109.5 | C1—C4—H4B | 109.8 |
H8A—C8—H8B | 109.5 | H4A—C4—H4B | 108.3 |
C15—C16—C11—C12 | 0.1 (4) | C5—N2—C3—O1 | −6.9 (4) |
C15—C16—C11—C5 | −176.1 (2) | C9—N2—C3—C2 | −3.8 (3) |
C4—O6—C10—O5 | 4.6 (4) | C5—N2—C3—C2 | 172.4 (2) |
C4—O6—C10—C6 | −175.1 (2) | C17—C2—C3—O1 | 4.5 (4) |
C7—C6—C10—O5 | 1.9 (4) | S1—C2—C3—O1 | −176.6 (2) |
C5—C6—C10—O5 | −172.4 (3) | C17—C2—C3—N2 | −174.8 (2) |
C7—C6—C10—O6 | −178.4 (2) | S1—C2—C3—N2 | 4.1 (3) |
C5—C6—C10—O6 | 7.3 (3) | C2—C17—C18—C19 | −3.3 (5) |
C7—N1—C9—N2 | 4.1 (4) | C2—C17—C18—C23 | 177.7 (3) |
C7—N1—C9—S1 | −175.11 (18) | C25—O3—C21—C22 | −5.5 (4) |
C3—N2—C9—N1 | −177.5 (2) | C25—O3—C21—C20 | 174.1 (2) |
C5—N2—C9—N1 | 6.3 (4) | C19—C20—C21—O3 | −178.0 (2) |
C3—N2—C9—S1 | 1.8 (3) | C19—C20—C21—C22 | 1.7 (4) |
C5—N2—C9—S1 | −174.44 (18) | C26—O4—C19—C20 | 4.1 (4) |
C2—S1—C9—N1 | 180.0 (2) | C26—O4—C19—C18 | −175.8 (2) |
C2—S1—C9—N2 | 0.7 (2) | C21—C20—C19—O4 | −179.4 (2) |
C10—C6—C7—N1 | 176.5 (2) | C21—C20—C19—C18 | 0.6 (4) |
C5—C6—C7—N1 | −9.6 (4) | C23—C18—C19—O4 | 177.6 (2) |
C10—C6—C7—C8 | −4.2 (4) | C17—C18—C19—O4 | −1.4 (4) |
C5—C6—C7—C8 | 169.8 (2) | C23—C18—C19—C20 | −2.4 (4) |
C9—N1—C7—C6 | −2.2 (4) | C17—C18—C19—C20 | 178.6 (2) |
C9—N1—C7—C8 | 178.3 (2) | C11—C16—C15—C14 | 0.9 (4) |
C18—C17—C2—C3 | 179.5 (3) | C16—C11—C12—C13 | −0.8 (4) |
C18—C17—C2—S1 | 0.9 (5) | C5—C11—C12—C13 | 175.3 (2) |
C9—S1—C2—C17 | 175.9 (3) | O3—C21—C22—C23 | 177.6 (2) |
C9—S1—C2—C3 | −2.7 (2) | C20—C21—C22—C23 | −1.9 (4) |
C9—N2—C5—C6 | −15.9 (3) | C11—C12—C13—C14 | 0.6 (4) |
C3—N2—C5—C6 | 168.1 (2) | C24—O2—C23—C22 | −13.5 (4) |
C9—N2—C5—C11 | 105.4 (3) | C24—O2—C23—C18 | 167.1 (2) |
C3—N2—C5—C11 | −70.6 (3) | C21—C22—C23—O2 | −179.4 (2) |
C7—C6—C5—N2 | 17.4 (3) | C21—C22—C23—C18 | 0.0 (4) |
C10—C6—C5—N2 | −168.2 (2) | C19—C18—C23—O2 | −178.5 (2) |
C7—C6—C5—C11 | −104.3 (3) | C17—C18—C23—O2 | 0.6 (3) |
C10—C6—C5—C11 | 70.0 (3) | C19—C18—C23—C22 | 2.0 (4) |
C12—C11—C5—N2 | 115.6 (3) | C17—C18—C23—C22 | −178.8 (2) |
C16—C11—C5—N2 | −68.3 (3) | C12—C13—C14—C15 | 0.3 (4) |
C12—C11—C5—C6 | −123.9 (3) | C16—C15—C14—C13 | −1.1 (4) |
C16—C11—C5—C6 | 52.1 (3) | C10—O6—C4—C1 | 121.5 (3) |
C9—N2—C3—O1 | 176.8 (2) |
D—H···A | D—H | H···A | D···A | D—H···A |
C24—H24C···O5i | 0.96 | 2.63 | 3.537 (3) | 158 |
C25—H25A···O5i | 0.96 | 2.57 | 3.319 (3) | 135 |
Symmetry code: (i) x+3/2, −y+1/2, z−1/2. |
Experimental details
Crystal data | |
Chemical formula | C26H26N2O6S |
Mr | 494.55 |
Crystal system, space group | Monoclinic, P21/n |
Temperature (K) | 296 |
a, b, c (Å) | 7.5363 (19), 18.178 (5), 16.973 (4) |
β (°) | 94.465 (5) |
V (Å3) | 2318.1 (10) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.19 |
Crystal size (mm) | 0.18 × 0.16 × 0.16 |
Data collection | |
Diffractometer | Bruker SMART APEX CCD detector |
Absorption correction | Multi-scan (SADABS; Bruker, 1998) |
Tmin, Tmax | 0.967, 0.971 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 13918, 5055, 3500 |
Rint | 0.052 |
(sin θ/λ)max (Å−1) | 0.639 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.058, 0.168, 1.07 |
No. of reflections | 5055 |
No. of parameters | 321 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.59, −0.38 |
Computer programs: SMART (Bruker, 1998), SAINT-Plus (Bruker, 1998), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 (Farrugia, 1997) and CAMERON (Watkin et al., 1996), WinGX (Farrugia, 1999).
D—H···A | D—H | H···A | D···A | D—H···A |
C24—H24C···O5i | 0.96 | 2.627 | 3.537 (3) | 158 |
C25—H25A···O5i | 0.96 | 2.570 | 3.319 (3) | 135 |
Symmetry code: (i) x+3/2, −y+1/2, z−1/2. |
Acknowledgements
NAB is grateful to KNS Institute of Technology for the encouragement and Rayalaseema University, Kurnool, India, for the data collection facility.
References
Alam, O., Khan, S. A., Siddiqui, N. & Ahsan, W. (2010). Med. Chem. Res. 19, 1245–1258. Web of Science CrossRef CAS Google Scholar
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Chen, X.-Y., Wang, H.-C., Zhang, Q., Song, Z.-J. & Zheng, F.-Y. (2012). Acta Cryst. E68, o127. Web of Science CSD CrossRef IUCr Journals Google Scholar
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Pyrimidine derivatives are of interest because of their pharmacological properties (Alam et al., 2010). In the title compound (Fig. 1), the central pyrimidine ring with a chiral C5 atom is significantly puckered and adopts conformation as seen earlier (Chen et al., 2012). The atom C5 deviates from the mean plane formed by the atoms N2/C9/N1/C6/C7 by 0.224 (2) Å, indicating that the conformation of the ring is that of a flattened boat. In the molecule, the fused thiazolopyrimidine ring makes a dihedral angle of 80.94 (7)° with the benzene ring (C11–C16). In the crystal, pairs of C—H···O hydrogen bonds are bifurcated linking the molecules into chains along c-axis (Fig. 2 and Table 1).